Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHL02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112805384-1922154 4_F2_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112805384-1922154 4_F2_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121801883-1879633 15G09_rep_B_Cilnidipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121801883-1879633 15G09_rep_B_Cilnidipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121209870-1879368 14G05_rep_D_Clonixin_Lysinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121209870-1879368 14G05_rep_D_Clonixin_Lysinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122811815-1880100 15B10_rep_D_Phentermine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122811815-1880100 15B10_rep_D_Phentermine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101710933-1869587 07C11_rep_C_Cyclizine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101710933-1869587 07C11_rep_C_Cyclizine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_53.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2E09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/eno_P3D2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024989 (eno_P3D2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112753149-1874236 11C04_rep_A_Sulfamonomethoxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112753149-1874236 11C04_rep_A_Sulfamonomethoxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170209_065ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/2a/540b9ff1cfa277f4771677e10a0eed/input_file/MMW3_20170209_065ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124903775-1876759 12E04_rep_C_Xamoterol_hemifumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124903775-1876759 12E04_rep_C_Xamoterol_hemifumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B22_id_MSn_positive.mzML at line 21
index 471 is out of bounds for axis 0 with size 471
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122740414-1867571 05A05_rep_A_Phenylpropanolamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122740414-1867571 05A05_rep_A_Phenylpropanolamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L21_id_MSn_positive.mzML at line 21
index 517 is out of bounds for axis 0 with size 517
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151152489-1924787 3_D8_SNF3_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151152489-1924787 3_D8_SNF3_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P24_id.mzML at line 21
index 491 is out of bounds for axis 0 with size 491
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101208779-1869346 07B06_rep_B_Terconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101208779-1869346 07B06_rep_B_Terconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153116434-1577236 Batch3_SKMES1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170125_036EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/f4/581f3e3b354378bf8f00519ca80d32/input_file/QC_20170125_036EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151343485-1924883 4_G3_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151343485-1924883 4_G3_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083442/ccms_peak/mzXMLs/181220_COM14_TCH1516_RPMI_New_Column/mzxml/+COM14_Samp08_TP4_BC4_01_19089.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000083442/ccms_peak/mzXMLs/181220_COM14_TCH1516_RPMI_New_Column/mzxml/+COM14_Samp08_TP4_BC4_01_19089.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113107217-1874382 11G01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113107217-1874382 11G01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112529709-1922017 4_A10_GPR1_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112529709-1922017 4_A10_GPR1_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/blank_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P10_id.mzML at line 21
index 578 is out of bounds for axis 0 with size 578
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_E2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_91.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125826214-1877186 13D04_rep_A_Ribavirinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125826214-1877186 13D04_rep_A_Ribavirinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28022021_Batch02_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102006435-1869730 07B07_rep_D_Tiaprofenic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102006435-1869730 07B07_rep_D_Tiaprofenic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/345.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/933.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093207868-1879187 14E09_rep_C_(+,-)-Synephrineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093207868-1879187 14E09_rep_C_(+,-)-Synephrineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A5_id_negative_20230130220140.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153638612-1868708 06D08_rep_C_Digoxina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153638612-1868708 06D08_rep_C_Digoxina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Sanguibacter_sp__BM5A020.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124836349-1862676 03A06_rep_B_Ethosuximidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124836349-1862676 03A06_rep_B_Ethosuximidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_18111330_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GC5_01_17166.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111942294-1872595 10A09_rep_C_Sulfadimethoxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111942294-1872595 10A09_rep_C_Sulfadimethoxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111951285-1921723 2_G7_GAP1_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111951285-1921723 2_G7_GAP1_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_D10_id_MSn_negative.mzML at line 21
index 318 is out of bounds for axis 0 with size 318
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190201014812.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100314982-1868920 06D05_rep_D_Cefadroxilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100314982-1868920 06D05_rep_D_Cefadroxilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101733871-1869606 07G08_rep_C_Molsidomineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101733871-1869606 07G08_rep_C_Molsidomineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/316.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G4_id_MSn_positive.mzML at line 21
index 424 is out of bounds for axis 0 with size 424
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100627136-1869073 07D03_rep_A_Iohexola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100627136-1869073 07D03_rep_A_Iohexola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I18_id_MSn_negative.mzML at line 21
index 320 is out of bounds for axis 0 with size 320
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153947265-1577657 Batch6_HL60_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/002_Soil_10mMExtra_1_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM6A010.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111452859-1871504 10D03_rep_B_Phenazopyridine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111452859-1871504 10D03_rep_B_Phenazopyridine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N13_id_MSn_negative.mzML at line 21
index 361 is out of bounds for axis 0 with size 361
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_69.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_cc4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample044.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_G6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GF4_01_17209.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007656_032118-1Thr3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_G5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_A2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095269/raw/HILIC_neg/240418_M255_01_HILIC_neg_S_aur_4_2.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_84.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210313_LKM_mb_rapid_no_beads_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130205015-1877352 13E07_rep_B_Darunavirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130205015-1877352 13E07_rep_B_Darunavirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125556296-1877070 12D02_rep_D_(+)-Isoproterenol_(+)-bitartrate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125556296-1877070 12D02_rep_D_(+)-Isoproterenol_(+)-bitartrate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_217.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223502970-1870154 01A06_rep_B_Atracurium besylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223502970-1870154 01A06_rep_B_Atracurium besylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124233421-1876487 08C03_rep_D_Camylofine_chlorhydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124233421-1876487 08C03_rep_D_Camylofine_chlorhydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_59.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_59.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200723486-1881602 16H10_rep_A_Desonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200723486-1881602 16H10_rep_A_Desonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ccmD_P3A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (ccmD_P3A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152342882-1576865 Batch1_HCC70_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/814.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_56_NOR_54.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_56_NOR_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113935602-1922714 3_C7_STE2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113935602-1922714 3_C7_STE2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223218612-1870029 01D04_rep_B_Diprophyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223218612-1870029 01D04_rep_B_Diprophyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P18_id.mzML at line 21
index 546 is out of bounds for axis 0 with size 546
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B11_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124652595-1876692 09G07_rep_A_Chlorcyclizine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124652595-1876692 09G07_rep_A_Chlorcyclizine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121239567-1879390 14B07_rep_D_Trifluridinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121239567-1879390 14B07_rep_D_Trifluridinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2C02Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1204.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1204.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyuA_P3G2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (hyuA_P3G2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202214065-1878272 10C09_rep_A_Monensin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202214065-1878272 10C09_rep_A_Monensin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD6_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130337932-1877424 13B01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130337932-1877424 13B01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111847393-1921669 2_E1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111847393-1921669 2_E1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111349216-1871455 10C06_rep_B_Spiramycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111349216-1871455 10C06_rep_B_Spiramycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_RBC3_POS.mzXML at line 689
attributes construct error, line 38, column 72 (Person4_RBC3_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150718779-1924551 2_F5_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150718779-1924551 2_F5_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084762/ccms_peak/AHU125.mzML at line 689
Premature end of data in tag binary line 29345, line 29345, column 32046 (AHU125.mzML, line 29345)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ03281572.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224240907-1870507 01D06_rep_D_Dapsonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224240907-1870507 01D06_rep_D_Dapsonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201107760-1881767 16H03_rep_B_Pemetrexed_disodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201107760-1881767 16H03_rep_B_Pemetrexed_disodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1583.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1583.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092853424-1879037 14F05_rep_C_Sulfadoxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092853424-1879037 14F05_rep_C_Sulfadoxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151019143-1865074 02C05_rep_D_Famotidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151019143-1865074 02C05_rep_D_Famotidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223531577-1870176 01B06_rep_B_Heptaminol hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223531577-1870176 01B06_rep_B_Heptaminol hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170209_052ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b7/d64b21c1196490ff5ce568e1198b12/input_file/SH10_20170209_052ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200957173-1877721 09G11_rep_B_Doxofyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200957173-1877721 09G11_rep_B_Doxofyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/659.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222800620-1869835 01E06_rep_A_Naproxena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222800620-1869835 01E06_rep_A_Naproxena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD4_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HaCaT_2_RESV_0uM_POS.mzXML at line 689
attributes construct error, line 38, column 81 (HaCaT_2_RESV_0uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152734340-1577055 Batch2_NCIH838_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153357470-1577366 Batch5_EBC1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130429045-1877464 13A06_rep_B_Floxuridineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130429045-1877464 13A06_rep_B_Floxuridineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223548396-1870189 01E04_rep_C_Betazole hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223548396-1870189 01E04_rep_C_Betazole hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201216_LKM_Hydrophilic_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_83.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_83.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210324_AD_11.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_55.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_A5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124024641-1876384 08E07_rep_D_Rimantadine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124024641-1876384 08E07_rep_D_Rimantadine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control170_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control170_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151411178-1576400 Batch6_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150814118-1864977 02F10_rep_D_Cefotaxime sodium saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150814118-1864977 02F10_rep_D_Cefotaxime sodium saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100734438-1869128 07E01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100734438-1869128 07E01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_09_dorsal_skin_control_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_09_dorsal_skin_control_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD2_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150952705-1924684 2_E1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150952705-1924684 2_E1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150605518-1924488 1_E3_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150605518-1924488 1_E3_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2G007.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113955456-1874767 11B08_rep_D_Deflazacortb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113955456-1874767 11B08_rep_D_Deflazacortb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130037059-1863262 04B08_rep_A_Retinoic_acid_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130037059-1863262 04B08_rep_A_Retinoic_acid_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101714613-1869590 07G10_rep_C_Trimetazidine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101714613-1869590 07G10_rep_C_Trimetazidine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_06_CNR_25.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_06_CNR_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxA_#5_P4H12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (lpxA_#5_P4H12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-071.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-071.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uxuB_P5E11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (uxuB_P5E11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/10 Sept 2021/converted/210916_tanaka13.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_A11_id_negative.mzML at line 21
index 224 is out of bounds for axis 0 with size 224
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7G01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153618854-1577482 Batch4_977_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (14).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114428777-1874989 12B04_rep_A_Felbinacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114428777-1874989 12B04_rep_A_Felbinacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike5_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_11P_A7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180414_ES_H3K_batch7_repC_77.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B15_id_MSn_positive.mzML at line 21
index 709 is out of bounds for axis 0 with size 709
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gpsA_P3F3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (gpsA_P3F3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_sp__WIAI05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JVE1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151932751-1576667 Batch1_HCC1143_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114124164-1922810 4_H10_STE2_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114124164-1922810 4_H10_STE2_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dgt_P3D2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (dgt_P3D2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A12_id_MSn_positive_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_E9_id_positive.mzML at line 21
index 327 is out of bounds for axis 0 with size 327
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S106.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S106.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_E8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/428.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_02062001_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113811810-1922640 3_H5_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113811810-1922640 3_H5_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/670.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_90.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009639_IBD200_E18_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123000441-1867683 05H10_rep_B_Prochlorperazine_dimaleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123000441-1867683 05H10_rep_B_Prochlorperazine_dimaleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEE2_50EV_RA6_01_22597.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153506227-1577422 Batch4_SW1573_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L7_id_negative.mzML at line 21
index 248 is out of bounds for axis 0 with size 248
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123401408-1876078 08G06_rep_B_Cytarabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123401408-1876078 08G06_rep_B_Cytarabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124642442-1862585 03B02_rep_B_Tranexamic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124642442-1862585 03B02_rep_B_Tranexamic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD1_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M6_id_MSn_positive.mzML at line 21
index 558 is out of bounds for axis 0 with size 558
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/453.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092306782-1878767 14G02_rep_A_Perindoprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092306782-1878767 14G02_rep_A_Perindoprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_87.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007488_031618-Unst2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_C9_id_negative.mzML at line 21
index 316 is out of bounds for axis 0 with size 316
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc054_neg.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc054_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122614075-1880008 15C04_rep_D_Cefdinira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122614075-1880008 15C04_rep_D_Cefdinira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lsrG_#1_P4D4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (lsrG_#1_P4D4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112108258-1921789 2_E4_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112108258-1921789 2_E4_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113731586-1922605 3_H2_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113731586-1922605 3_H2_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122445040-1879939 15A03_rep_C_Anastrozoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122445040-1879939 15A03_rep_C_Anastrozoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122816920-1880104 15E11_rep_D_Tulobuterola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122816920-1880104 15E11_rep_D_Tulobuterola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201311984-1881860 16A04_rep_B_Trimebutineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201311984-1881860 16A04_rep_B_Trimebutineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case253_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case253_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080611.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNX435_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100428066-1868978 06E02_rep_D_Estradiol-17_betab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100428066-1868978 06E02_rep_D_Estradiol-17_betab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125334512-1862915 03A04_rep_C_Chlorzoxazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125334512-1862915 03A04_rep_C_Chlorzoxazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100709509-1869108 07H02_rep_A_Hexetidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100709509-1869108 07H02_rep_A_Hexetidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_E9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/038_CRa_H9M5_M470_L14_K3_high_pos.mzXML at line 689
Premature end of data in tag peaks line 20179, line 20183, column 56823 (038_CRa_H9M5_M470_L14_K3_high_pos.mzXML, line 20183)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlB2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlB2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C11_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD6_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD6_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_163.mzXML at line 689
Premature end of data in tag msRun line 5, line 17759, column 1 (20121114_163.mzXML, line 17759)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_E9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150419111-1924398 1_A7_RGT2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150419111-1924398 1_A7_RGT2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112107183-1873047 10G05_rep_C_Bendroflumethiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112107183-1873047 10G05_rep_C_Bendroflumethiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125426690-1877002 12H03_rep_D_Toremifeneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125426690-1877002 12H03_rep_D_Toremifeneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201143942-1881794 16C08_rep_B_Algestone_acetophenideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201143942-1881794 16C08_rep_B_Algestone_acetophenideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET95.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET95.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_A12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151200081-1576291 Batch5_SHP77_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114914714-1875212 12A05_rep_B_Megluminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114914714-1875212 12A05_rep_B_Megluminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tktB_P5F7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (tktB_P5F7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Serratia_liquefaciens_P47_02.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD3_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_35.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_35.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J13_id_MSn_negative.mzML at line 21
index 325 is out of bounds for axis 0 with size 325
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111837125-1872063 10D02_rep_C_Terazosin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111837125-1872063 10D02_rep_C_Terazosin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GB2_01_16918.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30095 - GI-16-418.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ4_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121637070-1867040 04E02_rep_B_Fludrocortisone_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121637070-1867040 04E02_rep_B_Fludrocortisone_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2C06P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101224854-1869359 07A09_rep_B_Dosulepin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101224854-1869359 07A09_rep_B_Dosulepin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_106.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_106.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150847557-1865003 02A03_rep_D_Fulvestrantb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150847557-1865003 02A03_rep_D_Fulvestrantb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1360.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1360.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152058406-1867979 05H10_rep_C_Prochlorperazine_dimaleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152058406-1867979 05H10_rep_C_Prochlorperazine_dimaleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1426.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1426.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122126807-1879788 15H11_rep_B_Hexachlorophenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122126807-1879788 15H11_rep_B_Hexachlorophenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/133-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152033657-1576715 Batch1A_UMUC3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_68_CNR_15.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_68_CNR_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/7.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L1_id.mzML at line 21
index 525 is out of bounds for axis 0 with size 525
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/381.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114450761-1875007 12A02_rep_A_Niacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114450761-1875007 12A02_rep_A_Niacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yfeW_#1_P4B8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (yfeW_#1_P4B8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224335110-1870550 01G10_rep_D_Acebutolol hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224335110-1870550 01G10_rep_D_Acebutolol hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD1_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GH6_01_16999.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200954763-1881713 16F11_rep_B_Ritonavira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200954763-1881713 16F11_rep_B_Ritonavira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223817073-2227650 PAT48.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ddpF_#5_P4A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (ddpF_#5_P4A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhtC_P3B7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (rhtC_P3B7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151631250-1576516 Batch7_HCC38_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202443251-1878390 10C02_rep_A_Nadidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202443251-1878390 10C02_rep_A_Nadidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122117282-1879781 15F09_rep_B_Telmisartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122117282-1879781 15F09_rep_B_Telmisartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S2cells_3_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114310213-1922905 4_A9_STE2_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114310213-1922905 4_A9_STE2_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ2_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B6_id_MSn_positive.mzML at line 21
index 708 is out of bounds for axis 0 with size 708
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N7_id_MSn_negative.mzML at line 21
index 342 is out of bounds for axis 0 with size 342
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210328_AD_93.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153445330-1577405 Batch4_SW780_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/1.2_DMSO.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201930712-1882146 16B09_rep_D_Altrenogestb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201930712-1882146 16B09_rep_D_Altrenogestb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122455695-1867438 04F04_rep_D_Glafenine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122455695-1867438 04F04_rep_D_Glafenine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D11_id_MSn_positive.mzML at line 21
index 401 is out of bounds for axis 0 with size 401
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113525790-1874551 11F08_rep_C_(+)_-Levobunolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113525790-1874551 11F08_rep_C_(+)_-Levobunolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_120_3C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gatC_P3G8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (gatC_P3G8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111928217-1872584 10F02_rep_C_Alclometasone_dipropionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111928217-1872584 10F02_rep_C_Alclometasone_dipropionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_Zk4678.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113527420-1922498 2_G4_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113527420-1922498 2_G4_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Blank_pesticide_170402164556.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093102012-1879134 14G06_rep_C_Verteporfina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093102012-1879134 14G06_rep_C_Verteporfina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153709225-1577524 Batch4_ASPC1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223328658-1870082 01F03_rep_B_Carbamazepineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223328658-1870082 01F03_rep_B_Carbamazepineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case116_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case116_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153254582-1577315 Batch4_NCIH2286_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152018371-1576703 Batch1_HCC1143_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125018800-1862758 03A08_rep_C_Riluzole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125018800-1862758 03A08_rep_C_Riluzole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152101366-1576737 Batch1_HCC38_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114917254-1875214 12G01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114917254-1875214 12G01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/837.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_C2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hycG_P4A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (hycG_P4A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_036EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/02/29a6261d5a3a7d2a576f3e607286d1/input_file/QC_20170209_036EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113139157-1874407 11F09_rep_B_Doxazosin_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113139157-1874407 11F09_rep_B_Doxazosin_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHD07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078960/ccms_peak/SoceGT47-Pmix_SPL-P124-6+5_RA4_01_20450.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153410847-1577377 Batch4_NCIH2286_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123510510-1876134 08E09_rep_B_Oxibendazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123510510-1876134 08E09_rep_B_Oxibendazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_B3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ptsG_#1_P4D3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (ptsG_#1_P4D3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_1_male_2022_1017_Michael_neg-0.0019.mzML at line 689
Premature end of data in tag binary line 22771, line 22771, column 2336558 (2_1_male_2022_1017_Michael_neg-0.0019.mzML, line 22771)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151828164-1576613 Batch3_NCIH2228_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_C12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130349631-1877433 13B11_rep_B_Piribedil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130349631-1877433 13B11_rep_B_Piribedil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153525900-1868649 06H01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153525900-1868649 06H01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD3_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125745472-1863120 04C05_rep_A_Dyclonine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125745472-1863120 04C05_rep_A_Dyclonine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1273.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1273.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L10 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/018_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Blank_2_B-A1_1_5499.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000093474/peak/Classical_POS_GUADUA/G2_inactive/LuisCarlos_17G_DDA_POS.mzML at line 21
index 18976 is out of bounds for axis 0 with size 154
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007498_031618-Unst6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125439625-1862968 03C10_rep_D_Aminopurine,_6-benzyla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125439625-1862968 03C10_rep_D_Aminopurine,_6-benzyla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cusC_#4_P4E7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (cusC_#4_P4E7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Column2_test_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_A9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K14_id_negative.mzML at line 21
index 245 is out of bounds for axis 0 with size 245
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092818458-1879009 14C02_rep_B_Phensuximideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092818458-1879009 14C02_rep_B_Phensuximideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_HT_042_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_66.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_17111316_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_A7_id_negative.mzML at line 21
index 238 is out of bounds for axis 0 with size 238
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S25_0123_190124030701.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rbsC_#1_P4A8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (rbsC_#1_P4A8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlC1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlC1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD2_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112303210-1873620 10F02_rep_D_Alclometasone_dipropionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112303210-1873620 10F02_rep_D_Alclometasone_dipropionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-faux.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nepI_#1_P5F4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (nepI_#1_P5F4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124713749-1876709 09C01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124713749-1876709 09C01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C10_id_MSn_positive.mzML at line 21
index 456 is out of bounds for axis 0 with size 456
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNH099_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112737389-1922129 4_B10_GPR1_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112737389-1922129 4_B10_GPR1_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152448461-1576917 Batch2_BT20_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111606359-1871560 10D02_rep_B_Terazosin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111606359-1871560 10D02_rep_B_Terazosin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM5D002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ddlA_#2_P4A3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ddlA_#2_P4A3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/266.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150644025-1924521 2_F10_RGT2_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150644025-1924521 2_F10_RGT2_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/454.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075103.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112619339-1922060 4_B7_GPR1_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112619339-1922060 4_B7_GPR1_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30147 - GI-17-123.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E3_id.mzML at line 21
index 546 is out of bounds for axis 0 with size 546
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/158-4_MsMs_25min_20eV_GE6_01_4136.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153210104-1577279 Batch4_DMS114_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130123487-1863301 04D10_rep_A_Methylprednisolone,_6-alphab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130123487-1863301 04D10_rep_A_Methylprednisolone,_6-alphab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GG11_01_16872.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153946035-1577656 Batch6_HL60_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample058.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009442_IBD200_E6_A7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124233073-1862271 03A10_rep_A_Hydralazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124233073-1862271 03A10_rep_A_Hydralazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_G4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153728429-1577540 Batch4_NCIH1048_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00077438.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121618945-1867026 04H07_rep_B_Glibenclamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121618945-1867026 04H07_rep_B_Glibenclamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/646.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151834226-1576618 Batch7_NCIH1693_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223621044-1870214 01H04_rep_C_Sulindacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223621044-1870214 01H04_rep_C_Sulindacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_120.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_120.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080705/ccms_peak/RAW/SILAC 9h.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151958256-1867930 05F07_rep_C_Clofaziminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151958256-1867930 05F07_rep_C_Clofaziminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_A6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201538516-1881967 16E01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201538516-1881967 16E01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082718/ccms_peak/peak/ST000666/EX00376-lipidomics/Raw data/NEG/20141119_Test.mzXML at line 689
Extra content at the end of the document, line 40419, column 1 (20141119_Test.mzXML, line 40419)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111829528-1872057 10H03_rep_C_Propidium_iodideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111829528-1872057 10H03_rep_C_Propidium_iodideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081530/raw/blank2_pos_91_01_5572.mzML at line 689
Premature end of data in tag index line 138137, line 138138, column 1 (blank2_pos_91_01_5572.mzML, line 138138)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/158-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150020352-1864131 02G07_rep_B_Tamoxifen citratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150020352-1864131 02G07_rep_B_Tamoxifen citratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/393.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0031_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0031_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222846936-1869870 01G09_rep_A_Isoxsuprine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222846936-1869870 01G09_rep_A_Isoxsuprine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uxaC_#2_P4H8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (uxaC_#2_P4H8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_F8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_080b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100651881-1869093 07G03_rep_A_Probenecida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100651881-1869093 07G03_rep_A_Probenecida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123427486-1876099 08A01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123427486-1876099 08A01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/DEX-plasma-VLDL-24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F4_id_MSn_positive.mzML at line 21
index 690 is out of bounds for axis 0 with size 690
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_F1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122207232-1867302 04D05_rep_D_Prednisolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122207232-1867302 04D05_rep_D_Prednisolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8H12_160605171607.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GB9_01_16798.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/355.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB1C14.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122935568-1867663 05E02_rep_B_Bambuterol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122935568-1867663 05E02_rep_B_Bambuterol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/408.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_117.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_C12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111533581-1871535 10H04_rep_B_Cloperastine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111533581-1871535 10H04_rep_B_Cloperastine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30063 - GI-14-071.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201228522-1877831 09B10_rep_B_6-Furfurylaminopurineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201228522-1877831 09B10_rep_B_6-Furfurylaminopurineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223003866-1869928 01C07_rep_A_Cimetidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223003866-1869928 01C07_rep_A_Cimetidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092157678-1878712 14E06_rep_A_Topiramatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092157678-1878712 14E06_rep_A_Topiramatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_49.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153319158-1577335 Batch5_HDQP1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123147297-1875970 08E01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123147297-1875970 08E01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_2_B_rep_4_B-B9_1_5523.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153658422-1577515 Batch5_HCT15_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092153/peak/Sample0008.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113158314-1874422 11B01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113158314-1874422 11B01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223934016-2227717 PAT50.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/139-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201538960-1877969 09C11_rep_C_Irsogladine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201538960-1877969 09C11_rep_C_Irsogladine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115040762-1875282 12C04_rep_B_Diloxanide_furoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115040762-1875282 12C04_rep_B_Diloxanide_furoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091936018-1878603 13B10_rep_D_Ozagrel_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091936018-1878603 13B10_rep_D_Ozagrel_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/434.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087354/raw/190814_Serin_WP3.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD6_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample172_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202337326-1878338 10G06_rep_A_Dicumarola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202337326-1878338 10G06_rep_A_Dicumarola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET45.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET45.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_234.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170209_039ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c7/40bd8a7425078c5b8ff7afbc6f40b2/input_file/SH10_20170209_039ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075326.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170209_025ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e2/60c7731d35c5e6d88aa862b591e7fe/input_file/MMW4_20170209_025ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153148682-1577262 Batch3_KNS62_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E6_id_MSn_positive.mzML at line 21
index 407 is out of bounds for axis 0 with size 407
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gcvP_P3B6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (gcvP_P3B6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201724226-1882047 16F02_rep_C_Irbesartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201724226-1882047 16F02_rep_C_Irbesartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113224693-1922339 1_F7_IZH2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113224693-1922339 1_F7_IZH2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G11_id_negative.mzML at line 21
index 242 is out of bounds for axis 0 with size 242
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121609834-1879547 15B10_rep_A_Phentermine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121609834-1879547 15B10_rep_A_Phentermine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170209_014ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/f9/9ae97e6913740f5e5b20436f9af91f/input_file/SH7_20170209_014ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaG_P4A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (waaG_P4A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/379.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201216_LKM_700nm_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210119_LKM_yeast_nBut_5to1_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/188-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000088261/raw/210916_tanaka01.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091701467-1878480 13C06_rep_D_Guaiacola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091701467-1878480 13C06_rep_D_Guaiacola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/h2mb4p_ispH_P3B8_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (h2mb4p_ispH_P3B8_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G8_id_MSn_negative.mzML at line 21
index 303 is out of bounds for axis 0 with size 303
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100714254-1869112 07A04_rep_A_Rofecoxibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100714254-1869112 07A04_rep_A_Rofecoxibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152938315-1577160 Batch3_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3A05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152517426-1576941 Batch1_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_120_2A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4H12_160601060334.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603154003959-1577671 Batch6_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113515840-1922488 2_C5_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113515840-1922488 2_C5_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121828554-1867128 04F08_rep_C_Benzydamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121828554-1867128 04F08_rep_C_Benzydamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153428143-1577391 Batch4_NCIH1666_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_05_840_prot_15_IMS_20Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121346024-1866909 04B04_rep_B_Norethindroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121346024-1866909 04B04_rep_B_Norethindroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_84.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123152811-1867768 05C11_rep_B_Clozapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123152811-1867768 05C11_rep_B_Clozapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122433516-1879930 15G02_rep_C_Gatifloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122433516-1879930 15G02_rep_C_Gatifloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124047596-1876402 08F07_rep_D_Demecarium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124047596-1876402 08F07_rep_D_Demecarium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/scpA_P3B6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (scpA_P3B6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_faux.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_066EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/26/744c8b24d848e590ce839dd558b0a2/input_file/QC_20170207_066EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_121.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152918188-1577143 Batch3_A498_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S05_0126_190128221242.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L6_id_negative.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case76_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case76_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD2_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122608879-1880004 15G07_rep_D_Montelukasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122608879-1880004 15G07_rep_D_Montelukasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/exbB_P3H12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (exbB_P3H12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dadA_#1_P4E9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (dadA_#1_P4E9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/058_60.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/006_Ammonia_Day2_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201217668-1877823 09E04_rep_B_Pempidine_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201217668-1877823 09E04_rep_B_Pempidine_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085693/ccms_peak/MRM-validation cohort/BC MRM 8th batch.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124248250-1876499 08G08_rep_D_Folic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124248250-1876499 08G08_rep_D_Folic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113412363-1922433 2_H8_IZH2_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113412363-1922433 2_H8_IZH2_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170209_055ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/22/329c38205ecc0e51d0dcc015de9e54/input_file/SH10_20170209_055ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170209_031ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/39/00861830c2d3094782d0ce9a10e3fd/input_file/MMW6_20170209_031ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_C12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180914_ES_H3K_batch2_repC_24.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_C4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_C4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202208776-1882269 16E05_rep_D_Benzoxiquinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202208776-1882269 16E05_rep_D_Benzoxiquinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-067.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-067.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/idnO_#1_P4D3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (idnO_#1_P4D3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113323021-1874490 11D04_rep_B_Ifosfamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113323021-1874490 11D04_rep_B_Ifosfamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223832752-2227664 PAT33.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cmtA_P3A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024913 (cmtA_P3A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100425562-1868976 06H04_rep_D_Cefotetanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100425562-1868976 06H04_rep_D_Cefotetanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Bacillus_subtilis_3610_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113202826-1922320 1_C3_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113202826-1922320 1_C3_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122739153-1867570 05A05_rep_A_Phenylpropanolamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122739153-1867570 05A05_rep_A_Phenylpropanolamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD4_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007578_031718-5CRP6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/biotin_neg.mzXML at line 689
Premature end of data in tag peaks line 7487, line 7491, column 81386 (biotin_neg.mzXML, line 7491)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201755289-1882071 16F09_rep_C_Valdecoxiba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201755289-1882071 16F09_rep_C_Valdecoxiba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/srlB_P4D12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (srlB_P4D12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113533718-1922503 2_G8_IZH2_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113533718-1922503 2_G8_IZH2_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083989/updates/2019-07-18_Tongchai_9989dd7a/raw/180323_PMA_TS_BM_R_12_A_neg.mzXML at line 88
Invalid base64-encoded string: number of data characters (9961) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/216.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P12_id_MSn_negative.mzML at line 21
index 361 is out of bounds for axis 0 with size 361
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D22_id_negative.mzML at line 21
index 269 is out of bounds for axis 0 with size 269
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152530525-1576952 Batch1_CALU1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ilvA_#1_P4G12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (ilvA_#1_P4G12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control36_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control36_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130426232-1877462 13E01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130426232-1877462 13E01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125702543-1863084 03F09_rep_D_Fenbufena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125702543-1863084 03F09_rep_D_Fenbufena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112255581-1921882 3_E2_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112255581-1921882 3_E2_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaG_P4A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (waaG_P4A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_G6_id_positive.mzML at line 21
index 348 is out of bounds for axis 0 with size 348
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/612.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arnE_P3A4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (arnE_P3A4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150922976-1924658 2_F4_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150922976-1924658 2_F4_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_18072701_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_C7_id_MSn_positive_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_rerun_E6_BE6_01_12042.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1151.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S25_0124_190125000850.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202415389-1878368 10H03_rep_A_Propidium_iodidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202415389-1878368 10H03_rep_A_Propidium_iodidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092601251-1878903 14H08_rep_B_Azaperoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092601251-1878903 14H08_rep_B_Azaperoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d1_292_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 30736, column 1 (SysVirol_IFT001_1918_d1_292_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 30736)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H21_id_negative.mzML at line 21
index 263 is out of bounds for axis 0 with size 263
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122122770-1879785 15A11_rep_B_Estradiol_Valerateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122122770-1879785 15A11_rep_B_Estradiol_Valerateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/204-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_plasma_1h_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer3_plasma_1h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151007653-1865065 02H03_rep_D_Chloroxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151007653-1865065 02H03_rep_D_Chloroxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control134_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control134_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/moeB_#1_P4F1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (moeB_#1_P4F1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_C3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150402720-1864782 02B05_rep_C_Azathioprinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150402720-1864782 02B05_rep_C_Azathioprinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151316093-1576354 Batch7_CHAGOK1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B17_id_MSn_positive.mzML at line 21
index 607 is out of bounds for axis 0 with size 607
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/001_FC_1_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/SP418.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112519440-1922008 3_B5_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112519440-1922008 3_B5_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_B9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control96_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control96_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B01Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/689.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151655923-1576537 Batch7_SF295_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_19032111_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD4_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD5_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD5_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113104613-1874380 11B02_rep_B_Auranofina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113104613-1874380 11B02_rep_B_Auranofina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080071/ccms_peak/Dataset 1/Positive3/._NZ Lichen_P_2_lichen_06_F 3_BC9_01_25212.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224327646-1870544 01B07_rep_D_Sulfathiazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224327646-1870544 01B07_rep_D_Sulfathiazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-011.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-011.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153529599-1577441 Batch4_SW1573_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125458322-1877026 12G02_rep_D_Pentetic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125458322-1877026 12G02_rep_D_Pentetic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201900995-1878121 09D04_rep_D_Opipramol_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201900995-1878121 09D04_rep_D_Opipramol_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_G5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090549/updates/2023-02-07_bsedio_eb5d1a0f/peak/Madidi_mzXML/MDP0620.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC12.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Erwinia_billingiae_MS2C06Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153552368-1868670 06C10_rep_C_Valacyclovir_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153552368-1868670 06C10_rep_C_Valacyclovir_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_48.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111844958-1921667 2_C3_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111844958-1921667 2_C3_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122518442-1879965 15C06_rep_C_Celecoxibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122518442-1879965 15C06_rep_C_Celecoxibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112607402-1922050 4_A5_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112607402-1922050 4_A5_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD2_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122117921-1867262 04D11_rep_D_Quinidine_hydrochloride_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122117921-1867262 04D11_rep_D_Quinidine_hydrochloride_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113604642-1922530 2_A10_IZH2_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113604642-1922530 2_A10_IZH2_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223053920-1869965 01F05_rep_A_Mefenamic acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223053920-1869965 01F05_rep_A_Mefenamic acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GE7_01_11691.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113808822-1874681 11H04_rep_C_Theophylline_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113808822-1874681 11H04_rep_C_Theophylline_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091643568-1878466 13B09_rep_D_Memantine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091643568-1878466 13B09_rep_D_Memantine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/17_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122708375-1867545 05E02_rep_A_Bambuterol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122708375-1867545 05E02_rep_A_Bambuterol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111800271-1872034 10G08_rep_C_Merbromina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111800271-1872034 10G08_rep_C_Merbromina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D20_id_MSn_positive.mzML at line 21
index 381 is out of bounds for axis 0 with size 381
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N1_id_negative.mzML at line 21
index 276 is out of bounds for axis 0 with size 276
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124427356-1862362 03F03_rep_A_Pyrantel_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124427356-1862362 03F03_rep_A_Pyrantel_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152255591-1868070 05A05_rep_D_Phenylpropanolamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152255591-1868070 05A05_rep_D_Phenylpropanolamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152537765-1576958 Batch1_HCC1143_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/psuT_P4H8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (psuT_P4H8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122543858-1867477 05F10_rep_A_Nefazodone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122543858-1867477 05F10_rep_A_Nefazodone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_3_P_rep_2_B-C5_1_5844.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153653588-1577511 Batch4_RT4_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_04_blood_RESV_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_04_blood_RESV_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.alb_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123535343-1876154 08H02_rep_C_Alendronate_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123535343-1876154 08H02_rep_C_Alendronate_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYH003B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_12_blood_RESV_skin_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_12_blood_RESV_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_117a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample079_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/674.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_A5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1450.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1450.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201209318-1881813 16D05_rep_B_Perospironea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201209318-1881813 16D05_rep_B_Perospironea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control232_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control232_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sdaC_P3C5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (sdaC_P3C5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case131_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case131_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_F7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoL_#2_P3G1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (nuoL_#2_P3G1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201039755-1877752 09A04_rep_B_Flunisolidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201039755-1877752 09A04_rep_B_Flunisolidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/allD_P5F4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (allD_P5F4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaL_P4B8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (waaL_P4B8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/010_CRa_H9M5_M470_L03_K3_high_pos.mzXML at line 689
Premature end of data in tag peaks line 16284, line 16288, column 28141 (010_CRa_H9M5_M470_L03_K3_high_pos.mzXML, line 16288)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5D03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gabT_P3A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (gabT_P3A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control45_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control45_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121359867-1866919 04H03_rep_B_Flunarizine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121359867-1866919 04H03_rep_B_Flunarizine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/anhm_anmK_P3B1_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024911 (anhm_anmK_P3B1_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/4.4_4OI.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D10_id_MSn_negative.mzML at line 21
index 311 is out of bounds for axis 0 with size 311
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114044780-1874807 11E04_rep_D_Nafcillin_sodium_salt_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114044780-1874807 11E04_rep_D_Nafcillin_sodium_salt_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_H1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B13Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152906476-1577133 Batch3_EPLC272H_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417111344.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sufA_P4B6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (sufA_P4B6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_2_B_rep_2_B-D5_1_5854.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_6_Liver_HO_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 86 (Mouse_6_Liver_HO_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123305170-1876032 08H02_rep_B_Alendronate_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123305170-1876032 08H02_rep_B_Alendronate_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR331_5h1b.mzML at line 689
Opening and ending tag mismatch: binary line 98470 and scanWindow, line 98471, column 30 (pBpumR331_5h1b.mzML, line 98471)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike3_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metE_#3_P6A8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (metE_#3_P6A8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BMD5007.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/adeQ_#4_P4C8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (adeQ_#4_P4C8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GC5_01_16808.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C22_id_MSn_negative.mzML at line 21
index 303 is out of bounds for axis 0 with size 303
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152824305-1577097 Batch3_RERFLCA1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GE10_01_16841.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170207_034EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/4e/51cc13deb0e42af0855474c37e6947/input_file/MMW3_20170207_034EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153434211-1868608 06F04_rep_C_Calcipotrienea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153434211-1868608 06F04_rep_C_Calcipotrienea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112203526-1921837 3_E10_GPR1_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112203526-1921837 3_E10_GPR1_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD6_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mglB_P4A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (mglB_P4A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112541149-1922027 4_H2_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112541149-1922027 4_H2_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNT302_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-113_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112327166-1873639 10D02_rep_D_Terazosin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112327166-1873639 10D02_rep_D_Terazosin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/proA_P3E9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (proA_P3E9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/imp_purA_P3D4_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024911 (imp_purA_P3D4_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153807826-1577573 Batch6_NCIH82_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F22_id_MSn_positive.mzML at line 21
index 704 is out of bounds for axis 0 with size 704
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4A01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aspA_#1_P3G10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (aspA_#1_P3G10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111437109-1921068 1_G7_GAP1_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111437109-1921068 1_G7_GAP1_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1035.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122347525-1867383 04B08_rep_D_Retinoic_acid_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122347525-1867383 04B08_rep_D_Retinoic_acid_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202330943-1878333 10H01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202330943-1878333 10H01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152655979-1577023 Batch2_PC3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_19071524_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Blank_pesticide_170403234424.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_25.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_25.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113516951-1922489 2_C5_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113516951-1922489 2_C5_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_61_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_61_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR13h2b.mzML at line 689
Opening and ending tag mismatch: binary line 174904 and spectrum, line 174935, column 20 (pBpumR13h2b.mzML, line 174935)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_A11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_sp_EB1D001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201131826-1877790 09C09_rep_B_Acitretina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201131826-1877790 09C09_rep_B_Acitretina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G2_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C16_id_MSn_positive.mzML at line 21
index 468 is out of bounds for axis 0 with size 468
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/blank_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224235842-1870503 01H05_rep_D_Amitryptiline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224235842-1870503 01H05_rep_D_Amitryptiline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200932979-1881697 16F05_rep_A_Histamine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200932979-1881697 16F05_rep_A_Histamine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_172.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/223.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125451796-1877021 12E01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125451796-1877021 12E01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A19_id_negative.mzML at line 21
index 253 is out of bounds for axis 0 with size 253
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153504966-1577421 Batch4_SW1573_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J10_id_MSn_negative.mzML at line 21
index 343 is out of bounds for axis 0 with size 343
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122254758-1867340 04D04_rep_D_Cortisonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122254758-1867340 04D04_rep_D_Cortisonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170207_065EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/43/f3d9d7d12236dc921d82e58b8de670/input_file/MMW6_20170207_065EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113529638-1922500 2_E3_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113529638-1922500 2_E3_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201909055-1882129 16H02_rep_D_Cisatracurium_besylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201909055-1882129 16H02_rep_D_Cisatracurium_besylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_E4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152519851-1576943 Batch1_NCIH1299_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223815892-2227649 PAT48.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201035567-1881743 16D07_rep_B_Fenoldopama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201035567-1881743 16D07_rep_B_Fenoldopama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121908259-1879683 15A07_rep_B_Clavulanate_potassium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121908259-1879683 15A07_rep_B_Clavulanate_potassium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081208/ccms_peak/Blank_20151020.mzXML at line 689
Premature end of data in tag peaks line 8775, line 8775, column 54395 (Blank_20151020.mzXML, line 8775)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hD1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hD1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_117.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/447.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150140524-1864674 02C07_rep_B_Nicorandila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150140524-1864674 02C07_rep_B_Nicorandila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152510167-1576935 Batch2_OVCAR4_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100313657-1868919 06D05_rep_D_Cefadroxila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100313657-1868919 06D05_rep_D_Cefadroxila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081039/ccms_peak/raw/MTBLS293/mtab_R1_Dyhram_2014_1017_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GB4_01_16920.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_E10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/273.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H21_id_MSn_negative.mzML at line 21
index 338 is out of bounds for axis 0 with size 338
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_C5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150835912-1864994 02D02_rep_D_Naloxone hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150835912-1864994 02D02_rep_D_Naloxone hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_78.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aceA_P3F2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (aceA_P3F2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_125.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124635984-1862580 03G05_rep_B_Oxymetazoline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124635984-1862580 03G05_rep_B_Oxymetazoline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201750855-1878068 09C09_rep_D_Acitretina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201750855-1878068 09C09_rep_D_Acitretina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d1_285_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 28745, column 1 (SysVirol_IFL001_Cal04RG_d1_285_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 28745)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potI_P3D3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (potI_P3D3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101403463-1869438 07C07_rep_C_Sisomicin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101403463-1869438 07C07_rep_C_Sisomicin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_G11_id_negative.mzML at line 21
index 251 is out of bounds for axis 0 with size 251
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC03_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145609505-1863930 02G05_rep_A_Loperamide hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145609505-1863930 02G05_rep_A_Loperamide hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_28_NOR_52.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_28_NOR_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153014554-1868407 06B02_rep_A_Androsteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153014554-1868407 06B02_rep_A_Androsteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C10_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydcT_#2_P4A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (ydcT_#2_P4A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151930209-1576665 Batch7_NCIH510_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202420690-1878372 10E04_rep_A_Meclofenoxate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202420690-1878372 10E04_rep_A_Meclofenoxate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112705507-1874198 11C11_rep_A_Ethaverine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112705507-1874198 11C11_rep_A_Ethaverine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_E9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101508052-1869489 07G06_rep_C_Tetramisole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101508052-1869489 07G06_rep_C_Tetramisole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/190-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD6_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152845387-1577115 Batch3_SKLU1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P14_id_MSn_positive.mzML at line 21
index 543 is out of bounds for axis 0 with size 543
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ3_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A23_id.mzML at line 21
index 508 is out of bounds for axis 0 with size 508
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/16032021_Batch06_QC_ 5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD2_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD2_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_24.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_24.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yeiR_P3D5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (yeiR_P3D5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G13P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR231_5h2a.mzML at line 689
Opening and ending tag mismatch: spectrum line 35624 and scanWindow, line 35630, column 30 (pBlateR231_5h2a.mzML, line 35630)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike4_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_G7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/041_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/726.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000088889/ccms_peak/hmmm_t15_biomassextract_062021/QE_062521_CLCpos.mzML at line 689
attributes construct error, line 397201, column 123 (QE_062521_CLCpos.mzML, line 397201)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202145309-1878249 09C03_rep_D_D,L-Penicillamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202145309-1878249 09C03_rep_D_D,L-Penicillamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124405776-1862345 03G10_rep_A_Nefopam_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124405776-1862345 03G10_rep_A_Nefopam_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080615.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/001_Soil_WaterExtra_3_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample071.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100424283-1868975 06H04_rep_D_Cefotetana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100424283-1868975 06H04_rep_D_Cefotetana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBmegR231_5h1b.mzML at line 689
Opening and ending tag mismatch: binary line 16358 and binaryDataArray, line 16362, column 31 (pBmegR231_5h1b.mzML, line 16362)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114651248-1875098 12B11_rep_B_Methylatropine_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114651248-1875098 12B11_rep_B_Methylatropine_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075705.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES222_3.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control163_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control163_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153547628-1577456 Batch5_HCT15_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30245 - GI-18-114.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152131874-1868006 05H01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152131874-1868006 05H01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5D06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100421694-1868973 06F01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100421694-1868973 06F01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_11_RIN_47.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_11_RIN_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_09.mzXML at line 689
Premature end of data in tag peaks line 21663, line 21667, column 3651 (20121114_09.mzXML, line 21667)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD2_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113843131-1874709 11G08_rep_D_Paromomycin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113843131-1874709 11G08_rep_D_Paromomycin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dhaL_P3G4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (dhaL_P3G4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/abgA_#1_P5D5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (abgA_#1_P5D5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/24_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152542691-1576962 Batch2_OVCAR3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/226.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-blank4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113317128-1922384 1_C9_IZH2_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113317128-1922384 1_C9_IZH2_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ7_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_70_AC+_50.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125214057-1862850 03H08_rep_C_Ofloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125214057-1862850 03H08_rep_C_Ofloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152844227-1577114 Batch3_SKLU1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075351.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_MICU_103_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122021988-1879739 15A10_rep_B_Rifaximinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122021988-1879739 15A10_rep_B_Rifaximinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S01_0126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152433385-1868144 05B09_rep_D_N6-methyladenosinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152433385-1868144 05B09_rep_D_N6-methyladenosinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150627738-1924507 2_G9_RGT2_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150627738-1924507 2_G9_RGT2_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153728429-1577540 Batch4_NCIH1048_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202543297-1878437 10E11_rep_A_Isopropamide_iodideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202543297-1878437 10E11_rep_A_Isopropamide_iodideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNY228_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5C10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ahpC_#1_P4H4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (ahpC_#1_P4H4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/397.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112136288-1921813 2_B8_GAP1_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112136288-1921813 2_B8_GAP1_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4F09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_A12_id_positive.mzML at line 21
index 426 is out of bounds for axis 0 with size 426
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153510541-1868637 06G05_rep_C_Quetiapine_hemifumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153510541-1868637 06G05_rep_C_Quetiapine_hemifumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/847.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_CABIN_sample05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093038244-1879116 14D01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093038244-1879116 14D01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124357716-1876556 09A05_rep_A_N-Acetyl-DL-homocysteine_Thiolactonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124357716-1876556 09A05_rep_A_N-Acetyl-DL-homocysteine_Thiolactonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_35_AC+_15.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152303485-1868076 05D01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152303485-1868076 05D01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hycE_P3B11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (hycE_P3B11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD4_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-035_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3A03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_48.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A12_id_MSn_negative.mzML at line 21
index 225 is out of bounds for axis 0 with size 225
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125524569-1877046 12F10_rep_D_Iodipamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125524569-1877046 12F10_rep_D_Iodipamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/447.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150634597-1924513 2_A9_RGT2_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150634597-1924513 2_A9_RGT2_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/62-4_MsMs_25min_20eV_GE2_01_4120.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_dilute_190201041743.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_22.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_22.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112101259-1921783 2_A9_GAP1_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112101259-1921783 2_A9_GAP1_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G8_id_MSn_positive.mzML at line 21
index 422 is out of bounds for axis 0 with size 422
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220312_LKM_adipocytes_37C_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C19_id_MSn_negative.mzML at line 21
index 320 is out of bounds for axis 0 with size 320
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_B7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122246826-1879849 15D09_rep_C_Granisetronb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122246826-1879849 15D09_rep_C_Granisetronb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114037855-1922769 3_C4_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114037855-1922769 3_C4_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122555154-1867486 05E09_rep_A_Bepridil_hydrochloride_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122555154-1867486 05E09_rep_A_Bepridil_hydrochloride_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_D7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/blank_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_A4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_15_male_2022_1017_Michael_neg-0.0035.mzML at line 689
Premature end of data in tag binary line 20073, line 20073, column 154786 (2_15_male_2022_1017_Michael_neg-0.0035.mzML, line 20073)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201503683-1877945 09B04_rep_C_Mepenzolate_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201503683-1877945 09B04_rep_C_Mepenzolate_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180414_ES_H3K_batch7_repC_82.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114327574-1874939 12G09_rep_A_Timolol_maleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114327574-1874939 12G09_rep_A_Timolol_maleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170125_025EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/5c/0fabb2e27f513ab5fc7c0d963d6dfc/input_file/MMW4_20170125_025EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150422684-1924401 1_E2_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150422684-1924401 1_E2_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD6_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151536331-1576470 Batch7_CORL88_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/10 Sept 2021/converted/210916_tanaka01.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/304.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1452.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1452.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A24_id_negative.mzML at line 21
index 281 is out of bounds for axis 0 with size 281
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_090b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD3_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_G4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200608314-1881546 16B11_rep_A_Estramustineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200608314-1881546 16B11_rep_A_Estramustineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151237825-1924826 3_F11_SNF3_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151237825-1924826 3_F11_SNF3_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/HFS_vehicle_T24_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GG9_01_11728.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GA7_01_16780.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210115_AD_30.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_042ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/60/129eefa72118bacaf8417c1db7cb17/input_file/QC_20170127_042ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101232306-1869365 07G04_rep_B_Betahistine_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101232306-1869365 07G04_rep_B_Betahistine_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130234806-1877375 13B05_rep_B_Pronethalol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130234806-1877375 13B05_rep_B_Pronethalol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190317254-1889784 Na.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150955070-1924686 2_E8_RGT2_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150955070-1924686 2_E8_RGT2_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_H9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_H9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample107_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007567_031718-5CRP1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glnA_#3_P5H6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (glnA_#3_P5H6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112541275-1874131 10D07_rep_D_Diethylstilbestrolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112541275-1874131 10D07_rep_D_Diethylstilbestrolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-046_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152339222-1576862 Batch1_HCC70_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170209_068ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/11/d10f57759b65195848fccaf61aa7f3/input_file/MMW5_20170209_068ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/364.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153206773-1868492 06D02_rep_B_Pefloxacinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153206773-1868492 06D02_rep_B_Pefloxacinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_165.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151407787-1924904 4_F4_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151407787-1924904 4_F4_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081039/ccms_peak/raw/MTBLS293/mtab_R1_Dyhram_2014_1017_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1787.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1787.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Blank_1_B-A1_1_5626.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_C2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybjI_#3_P4B3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (ybjI_#3_P4B3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ12151465.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cynS_P5D1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (cynS_P5D1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_20_Blood_EtOH_control_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_20_Blood_EtOH_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093211575-1879190 14B07_rep_C_Trifluridinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093211575-1879190 14B07_rep_C_Trifluridinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_E5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074330.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpMat3_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165717276-2227470 PAT47.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100800884-1869149 07A08_rep_A_Daunorubicin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100800884-1869149 07A08_rep_A_Daunorubicin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_G3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample049.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130051259-1863274 04B05_rep_A_Nortriptyline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130051259-1863274 04B05_rep_A_Nortriptyline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C3_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152105366-1576740 Batch1_HCC38_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113227363-1874445 11C10_rep_B_Dimethadioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113227363-1874445 11C10_rep_B_Dimethadioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GG6_01_11549.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202442105-1878389 10H05_rep_A_Eucatropine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202442105-1878389 10H05_rep_A_Eucatropine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-19d-1.mzXML at line 689
Premature end of data in tag peaks line 1309, line 1313, column 3575 (YnYn-19d-1.mzXML, line 1313)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A24_id_negative.mzML at line 21
index 263 is out of bounds for axis 0 with size 263
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124206336-1876465 08D04_rep_D_Zaleplonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124206336-1876465 08D04_rep_D_Zaleplonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153936539-1577648 Batch6_SF539_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_67.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-6-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_G5_id_negative.mzML at line 21
index 253 is out of bounds for axis 0 with size 253
Error processing file: /data/datasets/server/MassIVE/MSV000085122/peak/29.mzXML at line 88
Invalid base64-encoded string: number of data characters (126457) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-070_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GC5_01_11652.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114159969-1874868 11B11_rep_D_Aminophyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114159969-1874868 11B11_rep_D_Aminophyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/codB_#1_P4C7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (codB_#1_P4C7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD2_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092624311-1878921 14C11_rep_B_Vorinostatb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092624311-1878921 14C11_rep_B_Vorinostatb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100202381-1868863 06A03_rep_D_Haloprogina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100202381-1868863 06A03_rep_D_Haloprogina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_71_RIN_15.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_71_RIN_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123034875-1867707 05F04_rep_B_Amethopterin_(R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123034875-1867707 05F04_rep_B_Amethopterin_(R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_G8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210325_AD_58.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145828262-1864042 02E07_rep_A_Mefloquine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145828262-1864042 02E07_rep_A_Mefloquine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121012564-1879280 14E10_rep_D_(S)-(-)-Cycloserinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121012564-1879280 14E10_rep_D_(S)-(-)-Cycloserinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C3_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152102661-1576738 Batch1_HCC38_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dosC_P4D6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (dosC_P4D6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130650170-1877575 13E06_rep_C_Apramycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130650170-1877575 13E06_rep_C_Apramycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111542592-1871542 10B11_rep_B_Ebselenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111542592-1871542 10B11_rep_B_Ebselenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202523970-1878422 10B02_rep_A_Sulfaquinoxaline_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202523970-1878422 10B02_rep_A_Sulfaquinoxaline_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12only_Replicate1_Level1_MSMS_pos.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_sample12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180418_ES_H3K_batch6_repB_94.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125714585-1863094 03E11_rep_D_Fenbendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125714585-1863094 03E11_rep_D_Fenbendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_96.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_96.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_03_blood_control_oral_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_03_blood_control_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125331440-1876960 12F07_rep_D_Bephenium_hydroxynaphthoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125331440-1876960 12F07_rep_D_Bephenium_hydroxynaphthoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150059234-1864161 02G06_rep_B_Chlortetracycline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150059234-1864161 02G06_rep_B_Chlortetracycline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_med (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R37_5h2a.mzML at line 689
Opening and ending tag mismatch: scanList line 73684 and binaryDataArray, line 73701, column 31 (pBlichMO17R37_5h2a.mzML, line 73701)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124739176-1862630 03E06_rep_B_Tolfenamic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124739176-1862630 03E06_rep_B_Tolfenamic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151912518-1576650 Batch7_NCIH510_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I8_id_MSn_positive.mzML at line 21
index 730 is out of bounds for axis 0 with size 730
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frmB_#3_P4G4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (frmB_#3_P4G4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102053922-1869769 07H04_rep_D_Pentamidine_isethionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102053922-1869769 07H04_rep_D_Pentamidine_isethionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101259645-1869387 07A11_rep_B_Iobenguane_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101259645-1869387 07A11_rep_B_Iobenguane_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081807/raw/VM67.mzXML at line 689
Extra content at the end of the document, line 5961, column 1 (VM67.mzXML, line 5961)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180501_ES_H3K_batch4_repD_57.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078932/ccms_peak/141031_CAICE_C18_709_20uL.mzXML at line 689
Premature end of data in tag peaks line 6782, line 6782, column 8074 (141031_CAICE_C18_709_20uL.mzXML, line 6782)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHA001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B8_id_negative.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202056232-1878211 09A01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202056232-1878211 09A01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5H09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yrbG_P4G11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (yrbG_P4G11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample30n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_G3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc052_pos.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc052_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190124034016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092221/ccms_peak/LuxWater_2019-2022/2022/Mar_end/22-04168_NEG.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_F2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B10_id_MSn_positive.mzML at line 21
index 478 is out of bounds for axis 0 with size 478
Error processing file: /data/datasets/server/MassIVE/MSV000095620/peak/mzML/BB109BHD10_S.mzML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (BB109BHD10_S.mzML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151615796-1576503 Batch7_SN12C_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150927621-1865034 02G06_rep_D_Chlortetracycline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150927621-1865034 02G06_rep_D_Chlortetracycline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124535831-1876633 09F05_rep_A_Sulfamerazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124535831-1876633 09F05_rep_A_Sulfamerazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_C2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113849619-1922673 3_B11_STE2_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113849619-1922673 3_B11_STE2_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mpl_#1_P4B6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (mpl_#1_P4B6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_133_2B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201549775-1877977 09C09_rep_C_Acitretinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201549775-1877977 09C09_rep_C_Acitretinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112004093-1921734 2_D8_GAP1_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112004093-1921734 2_D8_GAP1_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153747670-1577556 Batch6_HCC1806_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ6_6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151627271-1925017 4_G5_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151627271-1925017 4_G5_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D6_id_MSn_positive.mzML at line 21
index 690 is out of bounds for axis 0 with size 690
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_133_3B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223657842-1870242 01A04_rep_C_Acetazolamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223657842-1870242 01A04_rep_C_Acetazolamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/38-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-118_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgm_#3_P5C8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (pgm_#3_P5C8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/244.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125850578-1877205 13F03_rep_A_Trapidila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125850578-1877205 13F03_rep_A_Trapidila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201912452-1878130 09F09_rep_D_Tetrahydrozoline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201912452-1878130 09F09_rep_D_Tetrahydrozoline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112319595-1873633 10C04_rep_D_Medrysonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112319595-1873633 10C04_rep_D_Medrysonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113043445-1922251 1_B2_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113043445-1922251 1_B2_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124249625-1862284 03B02_rep_A_Tranexamic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124249625-1862284 03B02_rep_A_Tranexamic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121457790-1866963 04E04_rep_B_Homochlorcyclizine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121457790-1866963 04E04_rep_B_Homochlorcyclizine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/178_139.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122245573-1879848 15D09_rep_C_Granisetrona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122245573-1879848 15D09_rep_C_Granisetrona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124629744-1876674 09D06_rep_A_Oxacillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124629744-1876674 09D06_rep_A_Oxacillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E17_id_MSn_negative.mzML at line 21
index 302 is out of bounds for axis 0 with size 302
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/24 Sept 2021 - Copy/convert/210924_05.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_G10_id_positive.mzML at line 21
index 348 is out of bounds for axis 0 with size 348
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153901000-1577618 Batch7_MIAPACA2_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121530884-1879517 15E03_rep_A_Cyclophosphamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121530884-1879517 15E03_rep_A_Cyclophosphamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151048533-1865097 02F02_rep_D_Glipizideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151048533-1865097 02F02_rep_D_Glipizideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088790/raw/AFN07.mzXML at line 689
Specification mandates value for attribute centroiR, line 650838, column 19 (AFN07.mzXML, line 650838)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113629001-1874601 11D02_rep_C_Butacaineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113629001-1874601 11D02_rep_C_Butacaineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112119962-1873057 10E03_rep_C_Sulfapyridineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112119962-1873057 10E03_rep_C_Sulfapyridineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152317962-1576845 Batch1_NCIH1703_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152831293-1577103 Batch3_HT1197_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125340622-1862920 03C03_rep_D_Levamisole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125340622-1862920 03C03_rep_D_Levamisole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092153/peak/Sample0011.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152445980-1576915 Batch2_MDAMB468_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_19073146_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person29_RBC_elder_POS.mzXML at line 689
attributes construct error, line 41, column 81 (Person29_RBC_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G10_id_MSn_negative.mzML at line 21
index 356 is out of bounds for axis 0 with size 356
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/CORN_AAD2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpF_P3B11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (glpF_P3B11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223827203-2227659 PAT45.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165823048-2227530 Healthy4.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/534-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GD6_01_16949.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122927304-1875859 08E05_rep_A_Butenafine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122927304-1875859 08E05_rep_A_Butenafine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpMat3_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152054874-1576732 Batch1_NCIH2030_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/424.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8F06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample040.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170127_041ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/7b/d2d87ba85b34dfa29c9f50de10d7a9/input_file/SH7_20170127_041ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124236822-1862274 03D04_rep_A_Oxolinic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124236822-1862274 03D04_rep_A_Oxolinic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_148.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_135.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD6_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I1_id_negative.mzML at line 21
index 255 is out of bounds for axis 0 with size 255
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_0126_190127174818.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-028_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_64_RIN_40.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_64_RIN_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152459386-1576926 Batch1_HCC1143_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093127483-1879154 14D04_rep_C_Bethanechol_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093127483-1879154 14D04_rep_C_Bethanechol_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/246.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafTreatedB1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafTreatedB1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J19_id_MSn_positive.mzML at line 21
index 705 is out of bounds for axis 0 with size 705
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152158230-1576782 Batch1_NCIH1703_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JVE2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD6_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121739730-1879616 15B01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121739730-1879616 15B01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125046254-1876836 12G01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125046254-1876836 12G01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHF09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121325767-1879424 15C04_rep_A_Cefdinira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121325767-1879424 15C04_rep_A_Cefdinira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD2_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J4_id_MSn_negative.mzML at line 21
index 357 is out of bounds for axis 0 with size 357
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/292.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ6_6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151222025-1576309 Batch5_NCIH2135_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114206385-1922848 4_G3_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114206385-1922848 4_G3_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086335/ccms_peak/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Brancos/BD_13766.mzML at line 689
Extra content at the end of the document, line 50546, column 1 (BD_13766.mzML, line 50546)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_C4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124353973-1876553 09B01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124353973-1876553 09B01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151419614-1576407 Batch7_HARA_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_76.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 Column1_test_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cbdA_P3C6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (cbdA_P3C6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_RBC_24h_POS.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer1_RBC_24h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/610.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151146992-1576280 Batch5_LUDLU1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample016.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151451390-1924941 4_A9_SNF3_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151451390-1924941 4_A9_SNF3_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person03_blood_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 101 (Person03_blood_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J5_id.mzML at line 21
index 563 is out of bounds for axis 0 with size 563
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152910022-1577136 Batch5_NCIH3255_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_48.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101432157-1869461 07F09_rep_C_Phenindionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101432157-1869461 07F09_rep_C_Phenindionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bioF_P3D9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024991 (bioF_P3D9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B6_id.mzML at line 21
index 597 is out of bounds for axis 0 with size 597
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/858.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153358695-1577367 Batch5_EBC1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_F5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A15_id_MSn_positive.mzML at line 21
index 428 is out of bounds for axis 0 with size 428
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113732711-1922606 3_A3_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113732711-1922606 3_A3_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_sample12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_56.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081119/ccms_peak/Beers19_ms2ldaPLUS/POSmode/Beer_multibeers_14_fullscan3.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G23_id.mzML at line 21
index 595 is out of bounds for axis 0 with size 595
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2A06P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210330_AD_32.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1560.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1560.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/936-sma.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mscS_P3H6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (mscS_P3H6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101315961-1869400 07H01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101315961-1869400 07H01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1C03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223855345-1870333 01G06_rep_C_Diphenhydramine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223855345-1870333 01G06_rep_C_Diphenhydramine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153734305-1577545 Batch6_NCIH526_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201716652-1878042 09G09_rep_C_Benzethonium_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201716652-1878042 09G09_rep_C_Benzethonium_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/486-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ddpB_P3D5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (ddpB_P3D5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemD_P3H1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (hemD_P3H1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L79.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L79.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101732644-1869605 07G08_rep_C_Molsidominea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101732644-1869605 07G08_rep_C_Molsidominea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoN_P3H5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (nuoN_P3H5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111702303-1871603 10B05_rep_B_Flumethasonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111702303-1871603 10B05_rep_B_Flumethasonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlB1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlB1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L18_id_MSn_negative.mzML at line 21
index 299 is out of bounds for axis 0 with size 299
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_global_HFD21_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000081118/ccms_peak/Beers19_ms2ldaPLUS/NEGmode/Beer_multibeers_9_fullscan2.mzXML at line 689
Premature end of data in tag peaks line 25346, line 25350, column 665 (Beer_multibeers_9_fullscan2.mzXML, line 25350)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD2_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A23_id.mzML at line 21
index 627 is out of bounds for axis 0 with size 627
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/apt_#2_P4A4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (apt_#2_P4A4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnL_P4E8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (phnL_P4E8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/929.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130900969-1877680 13B06_rep_C_Naftopidil_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130900969-1877680 13B06_rep_C_Naftopidil_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_B11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_B11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_46_CNR_49.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_46_CNR_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaA_P3B4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (waaA_P3B4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152608183-1576983 Batch2_OVCAR4_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_G4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093112276-1879142 14C01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093112276-1879142 14C01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223724163-1870262 01D11_rep_C_Niclosamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223724163-1870262 01D11_rep_C_Niclosamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S119.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S119.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H4_id_MSn_negative.mzML at line 21
index 352 is out of bounds for axis 0 with size 352
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122309010-1879866 15E09_rep_C_Clarithromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122309010-1879866 15E09_rep_C_Clarithromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121519000-1879508 15E05_rep_A_Ethinylestradiola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121519000-1879508 15E05_rep_A_Ethinylestradiola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088606/ccms_peak/210116_AR_10_43_F09_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/154-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_247.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153519470-1868644 06E10_rep_C_Pilocarpine_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153519470-1868644 06E10_rep_C_Pilocarpine_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD1_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102136877-1869804 07A02_rep_D_Serotonin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102136877-1869804 07A02_rep_D_Serotonin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_15_Dorsal_skin_CMC_control_POS.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_15_Dorsal_skin_CMC_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw2_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/amtB_#2_P5A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (amtB_#2_P5A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222903010-1869882 01D11_rep_A_Niclosamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222903010-1869882 01D11_rep_A_Niclosamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_115.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_115.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151542282-1576475 Batch7_SN12C_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-cc4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H20_id.mzML at line 21
index 538 is out of bounds for axis 0 with size 538
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_rerun_H6_01_11785.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Micromonospora_sp_BM6C002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152308702-1868080 05E05_rep_D_Metergolinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152308702-1868080 05E05_rep_D_Metergolinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114419895-1874982 12B09_rep_A_Dioxybenzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114419895-1874982 12B09_rep_A_Dioxybenzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glnH_#3_P4G6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (glnH_#3_P4G6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180412_ES_H3K_batch7_repB_86.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD2_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151528604-1924970 4_D7_SNF3_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151528604-1924970 4_D7_SNF3_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151022900-1924710 3_G1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151022900-1924710 3_G1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_sample04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET89.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET89.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089590/ccms_peak/Sample/GN-01-G.mzML at line 689
Specification mandates value for attribute accessigTDZ9rGZFGQPVC, line 469165, column 52 (GN-01-G.mzML, line 469165)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112907904-1874295 11H06_rep_A_Reserpineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112907904-1874295 11H06_rep_A_Reserpineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D16_id_MSn_negative.mzML at line 21
index 334 is out of bounds for axis 0 with size 334
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEP2_30EV_RA6_01_22522.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150226469-1864709 02F09_rep_B_Terfenadineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150226469-1864709 02F09_rep_B_Terfenadineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153054946-1577219 Batch3_SKMES1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H20_id_MSn_positive.mzML at line 21
index 407 is out of bounds for axis 0 with size 407
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purE_P4E11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (purE_P4E11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_C13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1126.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153604763-1868680 06C05_rep_C_Cephalosporanic_acid,_7-aminoa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153604763-1868680 06C05_rep_C_Cephalosporanic_acid,_7-aminoa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GG7_01_17103.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130024345-1863252 04C11_rep_A_Fendiline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130024345-1863252 04C11_rep_A_Fendiline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/209-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_12_P3A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (ctrl_12_P3A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152840699-1577111 Batch3_A549_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125425369-1877001 12H03_rep_D_Toremifenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125425369-1877001 12H03_rep_D_Toremifenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/923.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112429926-1921965 3_F10_GPR1_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112429926-1921965 3_F10_GPR1_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201855792-1878117 09H06_rep_D_Sulfachloropyridazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201855792-1878117 09H06_rep_D_Sulfachloropyridazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151914903-1576652 Batch5_COLO205_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O14_id_MSn_positive.mzML at line 21
index 375 is out of bounds for axis 0 with size 375
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glxK_P4H10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (glxK_P4H10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_phospho_HFD15_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR17_5h2a.mzML at line 689
Specification mandates value for attribute unitAJ6BP8iegT, line 99157, column 113 (pBlateR17_5h2a.mzML, line 99157)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M22_id.mzML at line 21
index 544 is out of bounds for axis 0 with size 544
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153300733-1577320 Batch4_NCIH2009_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201557440-1877983 09F03_rep_C_Citalopram_Hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201557440-1877983 09F03_rep_C_Citalopram_Hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2A08P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152249066-1868065 05D08_rep_D_Amoxicillinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152249066-1868065 05D08_rep_D_Amoxicillinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc4 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123701463-1876222 08F06_rep_C_(-)-Emtricitabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123701463-1876222 08F06_rep_C_(-)-Emtricitabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3T5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3T5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201943655-1882156 16E07_rep_D_Enalaprilat_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201943655-1882156 16E07_rep_D_Enalaprilat_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET69.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET69.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_CABIN_sample05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNB091_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hB3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hB3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152921517-1868367 06G06_rep_A_Tosufloxacin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152921517-1868367 06G06_rep_A_Tosufloxacin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_ISP2_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_dilute_190131174628.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wzzB_P3E2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (wzzB_P3E2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_37.mzXML at line 689
Premature end of data in tag peaks line 19232, line 19236, column 15939 (20121114_37.mzXML, line 19236)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD5_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNT371_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/manX_#1_P4F12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (manX_#1_P4F12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC08.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125757496-1877164 13B08_rep_A_Zardaverineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125757496-1877164 13B08_rep_A_Zardaverineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R37_5h3a.mzML at line 2644
'name'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122103993-1879771 15C07_rep_B_Candesartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122103993-1879771 15C07_rep_B_Candesartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daidzein_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150248633-1864726 02D08_rep_B_Chlorpheniramine maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150248633-1864726 02D08_rep_B_Chlorpheniramine maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD5_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/631.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223955557-1870379 01F08_rep_C_Benoxinate hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223955557-1870379 01F08_rep_C_Benoxinate hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150632593-1864898 02C04_rep_C_Cyproheptadine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150632593-1864898 02C04_rep_C_Cyproheptadine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12only_Replicate1_Level1_MSMS_neg.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101648835-1869569 07A10_rep_C_Ceftazidime_pentahydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101648835-1869569 07A10_rep_C_Ceftazidime_pentahydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_C4_id_MSn_positive_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007488_031618-Unst2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123300795-1867823 05E07_rep_B_Ambroxol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123300795-1867823 05E07_rep_B_Ambroxol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_087b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D2_id_MSn_negative.mzML at line 21
index 302 is out of bounds for axis 0 with size 302
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LIM2_50EV_RA8_01_22540.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O11_id_MSn_positive.mzML at line 21
index 731 is out of bounds for axis 0 with size 731
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093476/raw/051322_HG_SIWANGANG_415_A1_DDA3.mzXML at line 689
Premature end of data in tag peaks line 7315, line 7319, column 18126 (051322_HG_SIWANGANG_415_A1_DDA3.mzXML, line 7319)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_21_Blood_EtOH_control_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_21_Blood_EtOH_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD6_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153112712-1577233 Batch3_SU8686_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123842170-1876302 08D11_rep_C_Zopiclonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123842170-1876302 08D11_rep_C_Zopiclonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122340091-1867377 04E11_rep_D_Sulfinpyrazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122340091-1867377 04E11_rep_D_Sulfinpyrazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124457750-1862386 03D01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124457750-1862386 03D01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007492_031618-Unst3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202006712-1878172 09E10_rep_D_Butylscopolammonium_(n-)_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202006712-1878172 09E10_rep_D_Butylscopolammonium_(n-)_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151659453-1576540 Batch7_7860_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151700914-1576541 Batch7_7860_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122233845-1879839 15C10_rep_C_Vardenafilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122233845-1879839 15C10_rep_C_Vardenafilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123314276-1867834 05A05_rep_B_Phenylpropanolamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123314276-1867834 05A05_rep_B_Phenylpropanolamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ12041433.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202226559-1878282 10H07_rep_A_Lithocholic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202226559-1878282 10H07_rep_A_Lithocholic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122312105-1867354 04G07_rep_D_Clemastine_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122312105-1867354 04G07_rep_D_Clemastine_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_rerun_E8_BE8_01_12050.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5E07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_76.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152145536-1576772 Batch2_NCIH2170_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125049177-1862782 03H05_rep_C_Chlorphensin_carbamatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125049177-1862782 03H05_rep_C_Chlorphensin_carbamatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-cc7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092503517-1878858 14A03_rep_B_Tridihexethyl_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092503517-1878858 14A03_rep_B_Tridihexethyl_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101033378-1869270 07D01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101033378-1869270 07D01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_C10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/25aics_purB_P4B7_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 634, column 10029919 (25aics_purB_P4B7_Aquity_pos.mzXML, line 634)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mngB_P6C4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (mngB_P6C4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200620395-1881555 16A04_rep_A_Trimebutinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200620395-1881555 16A04_rep_A_Trimebutinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080949/ccms_peak/peaks/3injections_inj2_NEG.mzXML at line 689
attributes construct error, line 41, column 76 (3injections_inj2_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBsubR37_5h3a.mzML at line 689
Opening and ending tag mismatch: binary line 28276 and binaryDataArray, line 28278, column 31 (pBsubR37_5h3a.mzML, line 28278)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA23.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ1_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_G9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_38.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_38.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ12151476.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201814626-1878086 09B05_rep_D_Benfotiaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201814626-1878086 09B05_rep_D_Benfotiaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145555675-1863919 02C11_rep_A_Oxandrolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145555675-1863919 02C11_rep_A_Oxandrolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P17_id_MSn_positive.mzML at line 21
index 766 is out of bounds for axis 0 with size 766
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_86.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-039_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_102b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_060ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ff/a51d0a21b753396c11987a1ee57037/input_file/QC_20170209_060ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151729877-1925070 4_C4_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151729877-1925070 4_C4_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113007587-1922224 1_C5_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113007587-1922224 1_C5_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114528030-1875035 12D10_rep_A_Bacitracinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114528030-1875035 12D10_rep_A_Bacitracinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/362.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/286.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152525587-1868184 05F05_rep_D_Methylergometrine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152525587-1868184 05F05_rep_D_Methylergometrine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124825693-1876731 12G05_rep_C_Phenoxybenzamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124825693-1876731 12G05_rep_C_Phenoxybenzamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/041_CRa_H9M5_M470_Blank_10_low_pos.mzXML at line 689
Premature end of data in tag peaks line 17652, line 17656, column 11768 (041_CRa_H9M5_M470_Blank_10_low_pos.mzXML, line 17656)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_76.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201305236-1881855 16D02_rep_B_Aminacrinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201305236-1881855 16D02_rep_B_Aminacrinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151813818-1576601 Batch4_HPAC_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD6_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_aqueous_longstudy_230215_179.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GD10_01_17187.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122447736-1879941 15E03_rep_C_Cyclophosphamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122447736-1879941 15E03_rep_C_Cyclophosphamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N14_id.mzML at line 21
index 518 is out of bounds for axis 0 with size 518
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130703898-1877586 13D04_rep_C_Ribavirinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130703898-1877586 13D04_rep_C_Ribavirinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082692/ccms_peak/ST000665/EX00348-lipidomics/Raw data/POS/Pooled.mzXML at line 88
Invalid base64-encoded string: number of data characters (13893) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151424364-1576411 Batch7_CORL23_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_A12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_C9_id_positive.mzML at line 21
index 318 is out of bounds for axis 0 with size 318
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190124130431.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201913780-1878131 09F09_rep_D_Tetrahydrozoline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201913780-1878131 09F09_rep_D_Tetrahydrozoline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E12_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_A_6.mzXML at line 689
Premature end of data in tag peaks line 2020, line 2024, column 7657 (L_A_6.mzXML, line 2024)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114317879-1922912 4_C5_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114317879-1922912 4_C5_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_2_B_rep_3_B-C1_1_5524.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person10_RBC_elder_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Person10_RBC_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1144.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153557383-1868674 06A04_rep_C_Thyroxine_(L)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153557383-1868674 06A04_rep_C_Thyroxine_(L)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121818970-1879646 15F08_rep_B_Vecuronium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121818970-1879646 15F08_rep_B_Vecuronium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glcD_P4D3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (glcD_P4D3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET58.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET58.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152918188-1577143 Batch3_A498_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152255069-1576827 Batch2_BT20_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J23_id.mzML at line 21
index 516 is out of bounds for axis 0 with size 516
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223116086-1869982 01D03_rep_A_Epirizoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223116086-1869982 01D03_rep_A_Epirizoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201750134-1882067 16A10_rep_C_Ubenimexa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201750134-1882067 16A10_rep_C_Ubenimexa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.gris_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_16_P4A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024900 (ctrl_16_P4A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBmegR17_5h1a.mzML at line 689
error parsing attribute name, line 125998, column 25 (pBmegR17_5h1a.mzML, line 125998)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201339664-1881881 16B04_rep_B_Rizatriptan_benzoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201339664-1881881 16B04_rep_B_Rizatriptan_benzoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ackA_#1_P4C11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (ackA_#1_P4C11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/HFS_vehicle_T0_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125734606-1863111 04A04_rep_A_Bufexamacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125734606-1863111 04A04_rep_A_Bufexamacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200950776-1881710 16F06_rep_A_Rasagilineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200950776-1881710 16F06_rep_A_Rasagilineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_A9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_A2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30141 - GI-16-551.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_08P_A7_id_positive.mzML at line 21
index 394 is out of bounds for axis 0 with size 394
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114139261-1874851 11B03_rep_D_Cromolyn_disodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114139261-1874851 11B03_rep_D_Cromolyn_disodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009424_IBD200_E5_A9.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2A09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L12_id_MSn_positive.mzML at line 21
index 699 is out of bounds for axis 0 with size 699
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc066_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc066_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007676_032118-1CRP3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A2_id_negative.mzML at line 21
index 244 is out of bounds for axis 0 with size 244
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151352720-1924891 4_A2_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151352720-1924891 4_A2_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control92_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control92_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O5_id_MSn_negative.mzML at line 21
index 338 is out of bounds for axis 0 with size 338
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075314.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113908046-1874729 11A11_rep_D_Sulconazole_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113908046-1874729 11A11_rep_D_Sulconazole_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNT372_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112537671-1922024 4_E5_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112537671-1922024 4_E5_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A3_id_MSn_positive.mzML at line 21
index 564 is out of bounds for axis 0 with size 564
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111842639-1921665 2_G5_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111842639-1921665 2_G5_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C6_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113708425-1874633 11A06_rep_C_Piromidic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113708425-1874633 11A06_rep_C_Piromidic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc1_T24_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_2_P_rep_3_B-A9_1_5513.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121935818-1867181 04D05_rep_C_Prednisoloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121935818-1867181 04D05_rep_C_Prednisoloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153100916-1868441 06C08_rep_B_Dibenzepine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153100916-1868441 06C08_rep_B_Dibenzepine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150503150-1864829 02A10_rep_C_Busulfanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150503150-1864829 02A10_rep_C_Busulfanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_89.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125430677-1877005 12B08_rep_D_Pipemidic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125430677-1877005 12B08_rep_D_Pipemidic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD5_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD3_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113853011-1874717 11G06_rep_D_Simvastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113853011-1874717 11G06_rep_D_Simvastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150745091-1924574 2_B5_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150745091-1924574 2_B5_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_H12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_H12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153036046-1577205 Batch3_NCIH460DNP53_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151603936-1576493 Batch7_CAL51_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125129491-1862814 03D01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125129491-1862814 03D01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112448518-1921981 3_G1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112448518-1921981 3_G1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_C7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G10_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD1_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201015290-1877734 09H03_rep_B_Benzocainea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201015290-1877734 09H03_rep_B_Benzocainea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2A07P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S05_0124_190125052433.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211005_LKM_beads_mb_silica700_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET94.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET94.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ3_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N6_id_negative.mzML at line 21
index 274 is out of bounds for axis 0 with size 274
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G18_id_MSn_negative.mzML at line 21
index 336 is out of bounds for axis 0 with size 336
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092317007-1878775 14G09_rep_A_Mephenytoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092317007-1878775 14G09_rep_A_Mephenytoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cueO_P3B9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (cueO_P3B9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_27_NOR_54.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_27_NOR_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample228_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI1b_1_23_1_892.mzML at line 689
Premature end of data in tag binary line 4663539, line 4663539, column 358051 (50130_microPOTS_Rat_Brain_ROI1b_1_23_1_892.mzML, line 4663539)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151950181-1576681 Batch1_HCC1806_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153641715-1577501 Batch4_NCIH1563_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151918433-1576655 Batch5_COLO205_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/171-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082793/ccms_peak/raw/MTBLS227/37382-A04-2.mzXML at line 689
Invalid character: Char 0x0 out of allowed range
, line 697, column 1 (37382-A04-2.mzXML, line 697)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-150_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130355012-1877437 13A10_rep_B_Darifenacin_hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130355012-1877437 13A10_rep_B_Darifenacin_hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124114173-1876423 08F11_rep_D_Acamprosate_calciumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124114173-1876423 08F11_rep_D_Acamprosate_calciumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078960/ccms_peak/Soce38-Hmix_SPL-6+5+4_RA1_01_20436.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124311722-1876518 08C02_rep_D_Reboxetine_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124311722-1876518 08C02_rep_D_Reboxetine_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control240_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control240_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092540272-1878887 14E09_rep_B_(+,-)-Synephrineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092540272-1878887 14E09_rep_B_(+,-)-Synephrineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B4_id_MSn_negative.mzML at line 21
index 271 is out of bounds for axis 0 with size 271
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K11_id.mzML at line 21
index 485 is out of bounds for axis 0 with size 485
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/copA_#1_P5G4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (copA_#1_P5G4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_A7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112547748-1874136 11E03_rep_A_Trimeprazine_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112547748-1874136 11E03_rep_A_Trimeprazine_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike3_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control173_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control173_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152921806-1577146 Batch3_HT1376_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223935605-1870364 01H09_rep_C_Thioridazine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223935605-1870364 01H09_rep_C_Thioridazine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097681/peak/amino acids/030521-b1-QC2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101948008-1869715 07D08_rep_D_Nystatinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101948008-1869715 07D08_rep_D_Nystatinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122257234-1867342 04H02_rep_D_Ifenprodil_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122257234-1867342 04H02_rep_D_Ifenprodil_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A14_id_MSn_negative.mzML at line 21
index 255 is out of bounds for axis 0 with size 255
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152524708-1576947 Batch2_LOXIMVI_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_90.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alsK_P6E11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (alsK_P6E11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151032545-1924718 3_B4_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151032545-1924718 3_B4_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD1_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092348900-1878800 14B03_rep_A_Iopanoic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092348900-1878800 14B03_rep_A_Iopanoic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_sample02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample231_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_GP25.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/leuE_P3E2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (leuE_P3E2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fepA_P4E8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (fepA_P4E8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_qc_low.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_116.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200706035-1881589 16B06_rep_A_Pantoprazole_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200706035-1881589 16B06_rep_A_Pantoprazole_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088017/ccms_peak/12299-WT1-15_Treffon.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_131.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA12.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/271.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100857744-1869194 07A06_rep_A_Cefaclor_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100857744-1869194 07A06_rep_A_Cefaclor_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_5_B_rep_4_B-E1_1_5672.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201623255-1878002 09B03_rep_C_Picrotoxinina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201623255-1878002 09B03_rep_C_Picrotoxinina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample073_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_A5_id_positive.mzML at line 21
index 318 is out of bounds for axis 0 with size 318
Error processing file: /data/datasets/server/MassIVE/MSV000080965/ccms_peak/ME3152111.mzML at line 689
Specification mandates value for attribute binary, line 15048, column 39 (ME3152111.mzML, line 15048)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201415936-1881908 16B02_rep_C_Ipriflavoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201415936-1881908 16B02_rep_C_Ipriflavoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_C6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gntP_P3G5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (gntP_P3G5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G5_id_MSn_negative.mzML at line 21
index 537 is out of bounds for axis 0 with size 537
Error processing file: /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_3mM_D_AC_AS_Neg.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_3mM_D_AC_AS_Neg.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122827134-1880112 15G06_rep_D_Racepinephrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122827134-1880112 15G06_rep_D_Racepinephrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125626982-1877094 12D05_rep_D_Estroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125626982-1877094 12D05_rep_D_Estroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C21_id_MSn_negative.mzML at line 21
index 294 is out of bounds for axis 0 with size 294
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/araF_P3F4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (araF_P3F4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/106-4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/34-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/985.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201528360-1881960 16D11_rep_C_Phenprobamateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201528360-1881960 16D11_rep_C_Phenprobamateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123355140-1876073 08F08_rep_B_Quipazine_dimaleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123355140-1876073 08F08_rep_B_Quipazine_dimaleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-3-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210325_AD_22.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113559867-1874578 11B08_rep_C_Deflazacorta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113559867-1874578 11B08_rep_C_Deflazacorta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101822417-1869646 07B04_rep_D_Omeprazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101822417-1869646 07B04_rep_D_Omeprazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNH099_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nagA_P3A3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (nagA_P3A3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152553077-1868205 05E09_rep_D_Bepridil_hydrochloride_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152553077-1868205 05E09_rep_D_Bepridil_hydrochloride_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/266.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I11_id_MSn_negative.mzML at line 21
index 341 is out of bounds for axis 0 with size 341
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170125_057EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/fe/d798658a3f549a973cb25a859777e4/input_file/SH7_20170125_057EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092211865-1878724 14A09_rep_A_Piperacetazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092211865-1878724 14A09_rep_A_Piperacetazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc014_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Controlcc014_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30124 - GI-16-041.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087808/raw/RIGHT_SSL_EI_sleep_STER_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1622.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1622.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121936413-1879704 15D02_rep_B_5-fluorouracila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121936413-1879704 15D02_rep_B_5-fluorouracila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113214781-1874435 11B03_rep_B_Cromolyn_disodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113214781-1874435 11B03_rep_B_Cromolyn_disodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_133_1C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_81.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121320942-1866890 04A07_rep_B_Pinacidila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121320942-1866890 04A07_rep_B_Pinacidila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD2_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/484-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD2_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/Alb-PDI-plasma-7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_251.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124607101-1862557 03G08_rep_B_Clemizole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124607101-1862557 03G08_rep_B_Clemizole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124324607-1862312 03D07_rep_A_Pentoxifyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124324607-1862312 03D07_rep_A_Pentoxifyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/GNPS-Nudibranch/converted coba2/200609_sample_43.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_sample11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223047084-1869960 01G10_rep_A_Acebutolol hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223047084-1869960 01G10_rep_A_Acebutolol hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_259.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2F02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124759985-1862647 03D09_rep_B_Salbutamolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124759985-1862647 03D09_rep_B_Salbutamolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125609547-1863041 03A05_rep_D_Ornidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125609547-1863041 03A05_rep_D_Ornidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124649962-1876690 09F04_rep_A_Promazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124649962-1876690 09F04_rep_A_Promazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0037_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpH_P4F6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (atpH_P4F6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_120_1B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130659021-1877582 13H05_rep_C_Pancuronium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130659021-1877582 13H05_rep_C_Pancuronium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8B04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152615432-1576989 Batch1_CALU6_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_SERUM_V8_SSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007605_031718-buffer ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_E9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090775/peak/converties targeted/SAE5c-t.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_15102011_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GD10_01_11677.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD5_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fadD_P3H8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (fadD_P3H8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnN_P4E7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (phnN_P4E7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124344517-1862328 03D08_rep_A_Metaraminol_bitartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124344517-1862328 03D08_rep_A_Metaraminol_bitartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_C5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150729978-1924561 2_A3_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150729978-1924561 2_A3_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123205239-1867778 05F06_rep_B_Methiothepin_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123205239-1867778 05F06_rep_B_Methiothepin_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122726037-1875764 08G04_rep_A_Pyridoxine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122726037-1875764 08G04_rep_A_Pyridoxine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153331927-1868559 06F07_rep_B_Meclocycline_sulfosalicylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153331927-1868559 06F07_rep_B_Meclocycline_sulfosalicylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112412778-1921950 3_A2_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112412778-1921950 3_A2_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200751259-1881622 16B02_rep_A_Ipriflavoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200751259-1881622 16B02_rep_A_Ipriflavoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224108936-1870435 01H09_rep_D_Thioridazine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224108936-1870435 01H09_rep_D_Thioridazine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHI04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_L19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_C4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111459292-1871509 10E01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111459292-1871509 10E01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124828845-1862670 03F09_rep_B_Fenbufena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124828845-1862670 03F09_rep_B_Fenbufena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210328_AD_21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153423107-1577387 Batch5_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151909760-1867891 05C09_rep_C_Chlorprothixene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151909760-1867891 05C09_rep_C_Chlorprothixene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28022021_Batch02_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaB_P4B9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (waaB_P4B9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112740776-1874226 11C07_rep_A_Oxalamine_citrate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112740776-1874226 11C07_rep_A_Oxalamine_citrate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1708.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1708.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/002_Soil_10mMExtra_3_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_12_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/L1cells_3_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125901018-1863183 04E06_rep_A_Chenodiolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125901018-1863183 04E06_rep_A_Chenodiolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224340143-1870554 01A05_rep_D_Metformin hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224340143-1870554 01A05_rep_D_Metformin hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125509861-1877035 12F01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125509861-1877035 12F01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153317913-1577334 Batch5_HDQP1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170207_015EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/6f/2f924c0ba5b5f0b59f319286275ece/input_file/SH9_20170207_015EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control152_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control152_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150409144-1864787 02G01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150409144-1864787 02G01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_M17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125218191-1876904 12C01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125218191-1876904 12C01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153206313-1577276 Batch5_NCIH727_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD6_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N9_id_negative.mzML at line 21
index 270 is out of bounds for axis 0 with size 270
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD4_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114224223-1922864 4_H3_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114224223-1922864 4_H3_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153530861-1577442 Batch4_977_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/blank_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mngA_P4F3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (mngA_P4F3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlC2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlC2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125922981-1877230 13B10_rep_A_Ozagrel_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125922981-1877230 13B10_rep_A_Ozagrel_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C20_id_MSn_negative.mzML at line 21
index 307 is out of bounds for axis 0 with size 307
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_64.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100823911-1869167 07H08_rep_A_Dirithromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100823911-1869167 07H08_rep_A_Dirithromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_E2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122027676-1867222 04H06_rep_C_Minocycline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122027676-1867222 04H06_rep_C_Minocycline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHL25.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009582_IBD200_E14_B12.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wecA_P3C11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (wecA_P3C11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L24_id.mzML at line 21
index 544 is out of bounds for axis 0 with size 544
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151524626-1924967 4_B8_SNF3_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151524626-1924967 4_B8_SNF3_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_H7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S2cells_clear_3_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170209_061ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/22/c1002fc9cfbb9cf027f4574d1d53e9/input_file/MMW4_20170209_061ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_091a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1146.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152816808-1868316 06F03_rep_A_Stanozolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152816808-1868316 06F03_rep_A_Stanozolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223908155-2227694 Healthy8.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125815291-1863145 04B10_rep_A_Ethacrynic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125815291-1863145 04B10_rep_A_Ethacrynic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/scpC_P3F5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (scpC_P3F5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151338736-1576373 Batch6_SR8714_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150843663-1865000 02A02_rep_D_Metronidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150843663-1865000 02A02_rep_D_Metronidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151846562-1867873 05D09_rep_C_Pemirolast_potassiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151846562-1867873 05D09_rep_C_Pemirolast_potassiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_75.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_75.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H4_id.mzML at line 21
index 552 is out of bounds for axis 0 with size 552
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/blank_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD1_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person29_blood_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 83 (Person29_blood_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151556675-1576487 Batch7_MIAPACA2_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112950237-1922210 1_H3_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112950237-1922210 1_H3_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yihO_P3D1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (yihO_P3D1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125036479-1862772 03H10_rep_C_Orphenadrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125036479-1862772 03H10_rep_C_Orphenadrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_87.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dsbG_P3F9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (dsbG_P3F9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150822498-1924606 2_E3_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150822498-1924606 2_E3_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N5_id_MSn_positive.mzML at line 21
index 363 is out of bounds for axis 0 with size 363
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/blank_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_2_B_rep_1_B-C6_1_5845.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/774.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100803308-1869151 07B09_rep_A_Artemisinina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100803308-1869151 07B09_rep_A_Artemisinina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092531396-1878880 14G01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092531396-1878880 14G01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_Plasma3_NEG.mzXML at line 689
attributes construct error, line 38, column 75 (Person4_Plasma3_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112350309-1921930 3_D8_GPR1_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112350309-1921930 3_D8_GPR1_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_global_LFD24_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_1_P_rep_4_B-C4_1_5656.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD1_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_C11_id_positive.mzML at line 21
index 321 is out of bounds for axis 0 with size 321
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/21_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample052.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201031570-1877746 09G01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201031570-1877746 09G01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/MS2/MC_MS_Pos_MS_1_2_3_4 Reps/DataMC_MS_Pos_1_2_3_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/MS2/MC_MS_Pos_MS_1_2_3_4 Reps/DataMC_MS_Pos_1_2_3_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122912721-1880148 15H10_rep_D_Acetylsalicylic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122912721-1880148 15H10_rep_D_Acetylsalicylic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/947.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GC6_01_11653.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNT360_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAI02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5B12_160601232642.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_99.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_99.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/954.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/973.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/819.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152444073-1868152 05G01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152444073-1868152 05G01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151606336-1576495 Batch7_NCIH226_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00072393.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153737923-1577548 Batch6_HL60_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113721185-1922596 3_F9_STE2_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113721185-1922596 3_F9_STE2_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114620583-1875074 12G02_rep_A_Pentetic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114620583-1875074 12G02_rep_A_Pentetic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafTreatedA3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafTreatedA3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ12151444.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112122531-1873540 10C01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112122531-1873540 10C01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_115_3A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122025161-1867220 04G02_rep_C_Lisinoprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122025161-1867220 04G02_rep_C_Lisinoprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150306179-1864739 02G09_rep_B_Canrenoic acid potassium saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150306179-1864739 02G09_rep_B_Canrenoic acid potassium saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130842318-1877665 13E08_rep_C_Fursultiamine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130842318-1877665 13E08_rep_C_Fursultiamine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121856754-1867150 04E02_rep_C_Fludrocortisone_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121856754-1867150 04E02_rep_C_Fludrocortisone_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092648284-1878940 14D08_rep_B_Formestanea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092648284-1878940 14D08_rep_B_Formestanea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/srlA_#1_P4D7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (srlA_#1_P4D7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GH2_01_11748.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113552398-1874572 11G09_rep_C_Acetaminophena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113552398-1874572 11G09_rep_C_Acetaminophena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F3_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_DPKS_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aldA_P4C2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (aldA_P4C2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114234556-1874896 11E09_rep_D_Iodixanola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114234556-1874896 11E09_rep_D_Iodixanola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120927663-1879246 14F05_rep_D_Sulfadoxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120927663-1879246 14F05_rep_D_Sulfadoxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_A2_id_negative.mzML at line 21
index 130 is out of bounds for axis 0 with size 130
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223023323-1869942 01C02_rep_A_Sulfaphenazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223023323-1869942 01C02_rep_A_Sulfaphenazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_084b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153808361-1868780 06D10_rep_C_Carbimazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153808361-1868780 06D10_rep_C_Carbimazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_67.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H12_id_MSn_negative.mzML at line 21
index 344 is out of bounds for axis 0 with size 344
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125633330-1863060 03A09_rep_D_Nitrofurantoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125633330-1863060 03A09_rep_D_Nitrofurantoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114855086-1875196 12G06_rep_B_Salmeterola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114855086-1875196 12G06_rep_B_Salmeterola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121035556-1879297 14H03_rep_D_Procarbazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121035556-1879297 14H03_rep_D_Procarbazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111622144-1871572 10C09_rep_B_Monensin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111622144-1871572 10C09_rep_B_Monensin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123311340-1876037 08B08_rep_B_Escitalopram_oxalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123311340-1876037 08B08_rep_B_Escitalopram_oxalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150954648-1865055 02C08_rep_D_Pioglitazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150954648-1865055 02C08_rep_D_Pioglitazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124744022-1862634 03C09_rep_B_Pentolinium_bitartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124744022-1862634 03C09_rep_B_Pentolinium_bitartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201024566-1877741 09E05_rep_B_Mirabegronb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201024566-1877741 09E05_rep_B_Mirabegronb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113348150-1874510 11E08_rep_B_(-)_-Levobunolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113348150-1874510 11E08_rep_B_(-)_-Levobunolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2C08P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dut_P3G3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (dut_P3G3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/001_Nitrate_Day9_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201333798-1877879 09F05_rep_C_Sulfamerazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201333798-1877879 09F05_rep_C_Sulfamerazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_E8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ompG_P5A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (ompG_P5A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5A06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125635894-1863062 03F01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125635894-1863062 03F01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113318299-1922385 1_C9_IZH2_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113318299-1922385 1_C9_IZH2_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR131_5h2a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 33365, column 1169 (pBlateR131_5h2a.mzML, line 33365)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114312760-1874927 12G03_rep_A_Bretylium_tosylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114312760-1874927 12G03_rep_A_Bretylium_tosylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200920925-1881688 16F02_rep_A_Irbesartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200920925-1881688 16F02_rep_A_Irbesartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_19032901_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153458784-1577416 Batch5_HCT116_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/001_Soil_WaterExtra_1_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_203.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151320847-1576358 Batch6_NCIH1838_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_F7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_18091336_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092223395-1878733 14A10_rep_A_Oxyphenbutazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092223395-1878733 14A10_rep_A_Oxyphenbutazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_73.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151634304-1925023 4_F2_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151634304-1925023 4_F2_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/004_Nitrate_Day2_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/speF_P3F4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (speF_P3F4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GF5_01_17087.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152320353-1576847 Batch2_NCIH226_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BMD5007.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudB_P4H7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (nudB_P4H7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D3_id_MSn_positive.mzML at line 21
index 397 is out of bounds for axis 0 with size 397
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V7_LH_PSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201508066-1881947 16F04_rep_C_Terbinafinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201508066-1881947 16F04_rep_C_Terbinafinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/TAA040_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1D02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153506750-1868634 06B03_rep_C_Amifostinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153506750-1868634 06B03_rep_C_Amifostinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_E4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR224h3a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 18396, column 9833 (pBpumR224h3a.mzML, line 18396)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_rerun_E1_01_11764.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GH10_01_11571.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074316.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082718/ccms_peak/ST000666/EX00376-lipidomics/Raw data/NEG/20141119_Test.mzXML at line 689
Extra content at the end of the document, line 40419, column 1 (20141119_Test.mzXML, line 40419)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD3_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAJ15.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_C5_id_positive.mzML at line 21
index 313 is out of bounds for axis 0 with size 313
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201157288-1881804 16C07_rep_B_Avobenzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201157288-1881804 16C07_rep_B_Avobenzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GE7_01_17198.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/006_Ammonia_Day17_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121042017-1879302 14A04_rep_D_Penbutolol_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121042017-1879302 14A04_rep_D_Penbutolol_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1F12_160526053518.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_0124_190125082717.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_C11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124151482-1876453 08A07_rep_D_Eserine_hemisulfate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124151482-1876453 08A07_rep_D_Eserine_hemisulfate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_E4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/16032021_Batch06_QC_ 5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/pap_cysH_P5G11_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024914 (pap_cysH_P5G11_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_B2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145649491-1863962 02G01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145649491-1863962 02G01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145931603-1864093 02F05_rep_B_Diltiazem hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145931603-1864093 02F05_rep_B_Diltiazem hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_102.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_102.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152442172-1576912 Batch1_HCC1806_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150504473-1864830 02H09_rep_C_Neomycin sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150504473-1864830 02H09_rep_C_Neomycin sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123655015-1876217 08B11_rep_C_Argatrobanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123655015-1876217 08B11_rep_C_Argatrobanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/109_96.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153538203-1577448 Batch5_HT29_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124859564-1876756 12H02_rep_C_Crotamitona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124859564-1876756 12H02_rep_C_Crotamitona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125006650-1862748 03G01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125006650-1862748 03G01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121656136-1867055 04C01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121656136-1867055 04C01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH68.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111852514-1872075 10B11_rep_C_Ebselenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111852514-1872075 10B11_rep_C_Ebselenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152710159-1577035 Batch2_LOXIMVI_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114003995-1874774 11B04_rep_D_Bucladesine_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114003995-1874774 11B04_rep_D_Bucladesine_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_RBC_0h_NEG.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer2_RBC_0h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/36-4_Ms_25min__GE4_01_4169.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6E05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET63.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET63.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125210380-1862847 03F06_rep_C_Mefexamide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125210380-1862847 03F06_rep_C_Mefexamide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_E9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122118673-1879782 15B05_rep_B_Anethole-trithionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122118673-1879782 15B05_rep_B_Anethole-trithionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_08P_C5_id_positive.mzML at line 21
index 369 is out of bounds for axis 0 with size 369
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNT360_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180420_ES_H3K_batch6_repC_96.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_105.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/16032021_Batch06_QC_ 4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092558704-1878901 14H02_rep_B_Mecamylamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092558704-1878901 14H02_rep_B_Mecamylamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152945383-1577166 Batch3_T24_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/12_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152247468-1576821 Batch2_NCIH441_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153220132-1577287 Batch4_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111503230-1871512 10E06_rep_B_Ethoxyquinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111503230-1871512 10E06_rep_B_Ethoxyquinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153314225-1577331 Batch3_KNS62_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6D04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD6_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/686.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078891/ccms_peak/massive_cyanos/EH_2014_07_14_WT+N2.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152511621-1868173 05G10_rep_D_Ketoconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152511621-1868173 05G10_rep_D_Ketoconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_5_B_rep_2_B-C1_1_5839.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_3_B-A2_1_5817.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B04P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170125_038EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/03/8407c9e569d29973b71cb4012aae09/input_file/SH10_20170125_038EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125605893-1863038 03F03_rep_D_Pyrantel_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125605893-1863038 03F03_rep_D_Pyrantel_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152755929-1577073 Batch1_769P_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224237112-1870504 01H05_rep_D_Amitryptiline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224237112-1870504 01H05_rep_D_Amitryptiline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124741575-1862632 03B10_rep_B_Phenformin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124741575-1862632 03B10_rep_B_Phenformin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Aeromonas_salmonicida_EB1K004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114621875-1875075 12G02_rep_A_Pentetic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114621875-1875075 12G02_rep_A_Pentetic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_A2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fdnI_P3A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (fdnI_P3A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122832288-1880116 15A03_rep_D_Anastrozolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122832288-1880116 15A03_rep_D_Anastrozolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091628776-1878455 13E09_rep_D_Gabexate_mesilateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091628776-1878455 13E09_rep_D_Gabexate_mesilateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151530295-1924971 4_C9_SNF3_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151530295-1924971 4_C9_SNF3_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123640098-1876205 08F04_rep_C_Diosminb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123640098-1876205 08F04_rep_C_Diosminb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample086.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088438/updates/2021-12-07_gbass_63710cd1/raw/timsconvert_test_2021DEC07/ms1/meoh_9_1_1205.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202046632-1882205 16A09_rep_D_Enrofloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202046632-1882205 16A09_rep_D_Enrofloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/grcA_P3E7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (grcA_P3E7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223856590-2227685 PAT48.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHL10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125200129-1876890 12D07_rep_C_Nitrendipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125200129-1876890 12D07_rep_C_Nitrendipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1039.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/livJ_P3H8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (livJ_P3H8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_A21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_18092931_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152919016-1868365 06G11_rep_A_Ceforanideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152919016-1868365 06G11_rep_A_Ceforanideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180702_ES_H3K_batch9_repB_132.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A7_id.mzML at line 21
index 576 is out of bounds for axis 0 with size 576
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202313238-1878319 10G04_rep_A_Clofibric_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202313238-1878319 10G04_rep_A_Clofibric_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417142025.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125824839-1877185 13D04_rep_A_Ribavirina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125824839-1877185 13D04_rep_A_Ribavirina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate26/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125630972-1877097 12A05_rep_D_Megluminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125630972-1877097 12A05_rep_D_Megluminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151200653-1924794 3_F5_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151200653-1924794 3_F5_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111612122-1921535 1_C11_GAP1_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111612122-1921535 1_C11_GAP1_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210308_AD_36.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130434211-1877468 13A04_rep_B_Enilconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130434211-1877468 13A04_rep_B_Enilconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112836142-1874270 11E06_rep_A_Amiprilose_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112836142-1874270 11E06_rep_A_Amiprilose_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153007178-1868402 06C06_rep_A_Chicago_sky_blue_6Ba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153007178-1868402 06C06_rep_A_Chicago_sky_blue_6Ba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121648815-1867049 04H01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121648815-1867049 04H01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_RBC_24h_NEG.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer1_RBC_24h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dgt_P3D2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024989 (dgt_P3D2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223348386-1870097 01B03_rep_B_Benzonatatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223348386-1870097 01B03_rep_B_Benzonatatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096497/peak/20200912_ProgressCurveAnalysis_Eda_set4_eff11_t5_rep2.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000096497/peak/20200912_ProgressCurveAnalysis_Eda_set4_eff11_t5_rep2.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/Alb-PDI-liver-42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114244280-1874904 12H03_rep_A_Toremifenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114244280-1874904 12H03_rep_A_Toremifenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_E7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/psuK_P4H7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (psuK_P4H7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151706788-1576546 Batch4_HPAC_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argT_P4C2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (argT_P4C2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112532345-1874124 10E10_rep_D_Sulfametera.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112532345-1874124 10E10_rep_D_Sulfametera.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD3_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_221.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V7_LH_PSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180628_ES_H3K_bacth8_repC_113.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170207_062EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/26/14f320e3e135b1ec03f1310c581540/input_file/SH8_20170207_062EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/galK_#4_P4D9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (galK_#4_P4D9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201313195-1881861 16D09_rep_B_Diatrizoic_acid_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201313195-1881861 16D09_rep_B_Diatrizoic_acid_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152001777-1576690 Batch1_HCC1806_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151442148-1576426 Batch7_CORL88_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150856102-1924635 2_H7_RGT2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150856102-1924635 2_H7_RGT2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7A03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ1_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201207911-1881812 16F09_rep_B_Valdecoxibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201207911-1881812 16F09_rep_B_Valdecoxibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151138173-1576273 Batch5_PC14PE6_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_07_dorsal_skin_control_skin_POS.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_07_dorsal_skin_control_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/948.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202250811-1878301 10B07_rep_A_Cefazolin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202250811-1878301 10B07_rep_A_Cefazolin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125839488-1863165 04H07_rep_A_Glibenclamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125839488-1863165 04H07_rep_A_Glibenclamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223545832-1870187 01B10_rep_B_Captoprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223545832-1870187 01B10_rep_B_Captoprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mhpF_P6B10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (mhpF_P6B10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122205068-1879817 15G09_rep_C_Cilnidipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122205068-1879817 15G09_rep_C_Cilnidipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091922030-1878592 13C04_rep_D_Dimaprit_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091922030-1878592 13C04_rep_D_Dimaprit_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150833020-1924615 2_D11_RGT2_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150833020-1924615 2_D11_RGT2_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_H11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_H11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075238.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170209_046ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/61/4ed6cc50168e5c96cfaf6116657a7a/input_file/MMW5_20170209_046ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_G6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kbaY_P4G6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (kbaY_P4G6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201503548-1881944 16F07_rep_C_Flumethasone_pivalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201503548-1881944 16F07_rep_C_Flumethasone_pivalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/20_D24062013T2111_1399CBU_0003_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075942.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V1_EDTAk2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150409724-1924390 1_E7_RGT2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150409724-1924390 1_E7_RGT2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD5_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152400437-1576879 Batch1_NCIH1993_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200841568-1881659 16A09_rep_A_Enrofloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200841568-1881659 16A09_rep_A_Enrofloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153812574-1577577 Batch6_SF539_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_ES11.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114526662-1875034 12D10_rep_A_Bacitracina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114526662-1875034 12D10_rep_A_Bacitracina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_1_P_rep_1_B-C9_1_5661.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092259/ccms_peak/Sample0011.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114115915-1874832 11D03_rep_D_Cefoxitin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114115915-1874832 11D03_rep_D_Cefoxitin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potE_#1_P4H5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (potE_#1_P4H5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210313_LKM_mb_rapid_beads_30min_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyaB_P5C11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (hyaB_P5C11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET62.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET62.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153856189-1577614 Batch7_EKVX_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114041039-1874804 11F10_rep_D_Fluvastatin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114041039-1874804 11F10_rep_D_Fluvastatin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_A6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_120_2B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_97.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124435517-1876587 09C05_rep_A_Loratadineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124435517-1876587 09C05_rep_A_Loratadineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/62-4_MsMs_25min_30eV_GE2_01_4122.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223221292-1870031 01D08_rep_B_Pyrimethaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223221292-1870031 01D08_rep_B_Pyrimethaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007490_031618-Unst2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dapB_P5G7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (dapB_P5G7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007494_031618-Unst4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control57_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control57_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yfdR_#3_P4E1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (yfdR_#3_P4E1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_94.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113915480-1874735 11H09_rep_D_Ioversolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113915480-1874735 11H09_rep_D_Ioversolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ccmC_P3B1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (ccmC_P3B1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201206537-1877815 09C04_rep_B_Zileutonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201206537-1877815 09C04_rep_B_Zileutonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165910342-2227574 PAT50.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201852563-1882116 16F09_rep_D_Valdecoxibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201852563-1882116 16F09_rep_D_Valdecoxibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C24_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample117.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-049.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-049.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_19090114_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C10_id_MSn_positive.mzML at line 21
index 703 is out of bounds for axis 0 with size 703
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124407485-1876564 09B06_rep_A_Halcinonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124407485-1876564 09B06_rep_A_Halcinonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00077330.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151215893-1576304 Batch5_NCIH345_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152937102-1577159 Batch3_T24_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD6_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/clsB_P4H1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (clsB_P4H1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081749.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123614555-1876185 08H11_rep_C_Sertindoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123614555-1876185 08H11_rep_C_Sertindoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091954022-1878617 13F03_rep_D_Trapidilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091954022-1878617 13F03_rep_D_Trapidilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample144.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1095-A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121302651-1879407 14C08_rep_D_Ticarcillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121302651-1879407 14C08_rep_D_Ticarcillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3C03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GF11_01_17216.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150303516-1864737 02H03_rep_B_Chloroxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150303516-1864737 02H03_rep_B_Chloroxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083442/ccms_peak/mzXMLs/181223_COM11_LAC_RPMI_New_Column/mzxml/+COM11_Samp04_TP6_GD6_01_19297.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000083442/ccms_peak/mzXMLs/181223_COM11_LAC_RPMI_New_Column/mzxml/+COM11_Samp04_TP6_GD6_01_19297.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_D1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122902423-1880140 15A09_rep_D_Mepivacaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122902423-1880140 15A09_rep_D_Mepivacaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153317913-1577334 Batch5_HDQP1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lysC_P3D6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (lysC_P3D6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Blank_pesticide_170403003932.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bcp_P3A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (bcp_P3A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc059_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc059_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/emodin_neg.mzXML at line 689
Premature end of data in tag peaks line 7287, line 7291, column 73192 (emodin_neg.mzXML, line 7291)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101730229-1869603 07A09_rep_C_Dosulepin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101730229-1869603 07A09_rep_C_Dosulepin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092047465-1878658 14H07_rep_A_Dorzolamide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092047465-1878658 14H07_rep_A_Dorzolamide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L74.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L74.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_F7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_119b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113626999-1922549 2_H11_IZH2_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113626999-1922549 2_H11_IZH2_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E21_id_negative.mzML at line 21
index 268 is out of bounds for axis 0 with size 268
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GC9_01_16941.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_115_2B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114345896-1874954 12F06_rep_A_(-)-MK_801_hydrogen_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114345896-1874954 12F06_rep_A_(-)-MK_801_hydrogen_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153717362-1577531 Batch4_977_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202601537-1878451 10D06_rep_A_Piperacillin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202601537-1878451 10D06_rep_A_Piperacillin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_male_2022_1017_Michael_neg-0016.mzML at line 689
Premature end of data in tag binary line 32427, line 32427, column 72785 (pooled_male_2022_1017_Michael_neg-0016.mzML, line 32427)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152851501-1868343 06D05_rep_A_Cefadroxilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152851501-1868343 06D05_rep_A_Cefadroxilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_E4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153331499-1577345 Batch4_NCIH1793_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30079 - GI-14-881.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C8_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-076_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/792.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200928881-1881694 16A11_rep_A_Troxipideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200928881-1881694 16A11_rep_A_Troxipideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222927730-1869901 01H06_rep_A_Adiphenine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222927730-1869901 01H06_rep_A_Adiphenine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151444522-1576428 Batch6_MOLT4_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130303177-1877397 13B02_rep_B_Remoxipride_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130303177-1877397 13B02_rep_B_Remoxipride_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153410847-1577377 Batch4_NCIH2286_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_75.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_75.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fpr_#1_P4D8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (fpr_#1_P4D8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152156962-1576781 Batch1_NCIH1703_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD2_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike2_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207133008281-1733937 1fb Wound5D 1 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/zntA_P3G1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (zntA_P3G1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121305628-1879409 15E06_rep_A_Fluocinolone_acetonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121305628-1879409 15E06_rep_A_Fluocinolone_acetonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124417205-1876572 09H03_rep_A_Benzocainea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124417205-1876572 09H03_rep_A_Benzocainea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_A45M_pos_IMS1_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_115_2B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp2/20180309173110177-1989058 skin 5db.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_77.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087069/ccms_peak/BRB Liquid Convert pos/BBR_R140000_N70_I10e6_E30_pos_06292020.mzML at line 689
Premature end of data in tag binary line 77596, line 77596, column 250758 (BBR_R140000_N70_I10e6_E30_pos_06292020.mzML, line 77596)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114001556-1874772 11C03_rep_D_Clidinium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114001556-1874772 11C03_rep_D_Clidinium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125403976-1876985 12E10_rep_D_Ketorolac_tromethaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125403976-1876985 12E10_rep_D_Ketorolac_tromethaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/523-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101257218-1869385 07E03_rep_B_Thiostreptona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101257218-1869385 07E03_rep_B_Thiostreptona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STY1_30EV_RA2_01_22638.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130343186-1877428 13H10_rep_B_Levocabastine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130343186-1877428 13H10_rep_B_Levocabastine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD4_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B5_id_MSn_positive.mzML at line 21
index 479 is out of bounds for axis 0 with size 479
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1585.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1585.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_F8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike2_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d1_293_lipid__Neg_17Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 37773, column 1 (SysVirol_IFL001_1918_d1_293_lipid__Neg_17Sep13_13-07-01.mzXML, line 37773)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_H7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C21_id_MSn_negative.mzML at line 21
index 317 is out of bounds for axis 0 with size 317
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/427.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090213/ccms_peak/9March2022_001_Blank MeOH_neg .mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/psuG_P3E9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (psuG_P3E9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_113.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151322038-1576359 Batch6_NCIH1838_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/naringenin.mzXML at line 689
Premature end of data in tag peaks line 18647, line 18651, column 32236 (naringenin.mzXML, line 18651)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153724780-1577537 Batch4_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S107.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S107.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100444930-1868991 06B03_rep_D_Amifostinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100444930-1868991 06B03_rep_D_Amifostinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092228484-1878737 14B05_rep_A_Levopropoxyphene_napsylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092228484-1878737 14B05_rep_A_Levopropoxyphene_napsylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_16061440_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fadJ_#2_P5A3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (fadJ_#2_P5A3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GF4_01_11530.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123058836-1867725 05C10_rep_B_Ritodrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123058836-1867725 05C10_rep_B_Ritodrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_89.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A7_id_MSn_positive.mzML at line 21
index 669 is out of bounds for axis 0 with size 669
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114222009-1922862 4_B11_STE2_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114222009-1922862 4_B11_STE2_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145836852-1864049 02G06_rep_A_Chlortetracycline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145836852-1864049 02G06_rep_A_Chlortetracycline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1153.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130229817-1877371 13A07_rep_B_Sotalol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130229817-1877371 13A07_rep_B_Sotalol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample113_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample25n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125804557-1863136 04G11_rep_A_Mebeverine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125804557-1863136 04G11_rep_A_Mebeverine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121003058-1879273 14G04_rep_D_4-aminosalicylic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121003058-1879273 14G04_rep_D_4-aminosalicylic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mglA_P3C4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (mglA_P3C4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/827.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201220_LKM_5to1_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHF02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GB1_01_11630.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ1_6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152115329-1576748 Batch1A_UMUC3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_74.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111418978-1921053 1_H5_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111418978-1921053 1_H5_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/369.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M15_id_MSn_positive.mzML at line 21
index 466 is out of bounds for axis 0 with size 466
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100155728-1868858 06C11_rep_D_Cisaprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100155728-1868858 06C11_rep_D_Cisaprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GE10_01_17078.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/A1/CNS654_A1_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112230526-1921860 3_E5_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112230526-1921860 3_E5_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_47_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_47_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/R24_II_ESI+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153251261-1868527 06F06_rep_B_Mebhydroline_1,5-naphtalenedisulfonateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153251261-1868527 06F06_rep_B_Mebhydroline_1,5-naphtalenedisulfonateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007498_031618-Unst6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B21_id_negative.mzML at line 21
index 262 is out of bounds for axis 0 with size 262
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GG7_01_11726.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H22_id_negative.mzML at line 21
index 251 is out of bounds for axis 0 with size 251
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_C3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1210.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1210.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123236102-1867803 05G05_rep_B_Probucolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123236102-1867803 05G05_rep_B_Probucolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114213924-1874879 11F04_rep_D_Liothyronineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114213924-1874879 11F04_rep_D_Liothyronineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD2_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_B4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_030ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/6b/b270dd4e017e8e1b8c971fc902f84d/input_file/QC_20170127_030ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150841061-1864998 02F07_rep_D_Astemizolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150841061-1864998 02F07_rep_D_Astemizolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glf_#1_P3F7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (glf_#1_P3F7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170127_053ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/62/4ec19b1bac8f58f4b55db0fc87c571/input_file/SH8_20170127_053ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8B07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111555679-1871552 10A07_rep_B_Mephentermine_hemisulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111555679-1871552 10A07_rep_B_Mephentermine_hemisulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083383/updates/2019-10-30_allegraaron_e0b9cac9/other/allegraaron/hui_fe_and_zn/Hui_N1.mzXML at line 689
Premature end of data in tag peaks line 3981, line 3985, column 115916 (Hui_N1.mzXML, line 3985)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET48.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET48.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A7Bs10mm_black_P1-A-8_01_23059.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1E08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009602_IBD200_E16_A1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD2_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case15_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case15_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101628320-1869552 07C02_rep_C_Vigabatrin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101628320-1869552 07C02_rep_C_Vigabatrin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-038.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-038.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090268/ccms_peak/Microbial Reference Database/Salinispora_MSV000078836/Y498-3-Bu.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000090268/ccms_peak/Microbial Reference Database/Salinispora_MSV000078836/Y498-3-Bu.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151300612-1924846 3_C8_SNF3_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151300612-1924846 3_C8_SNF3_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190117_ES_H3K_batch14_repA_208.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122804181-1867591 05H08_rep_A_Clomiphene_citrate_(Z,E)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122804181-1867591 05H08_rep_A_Clomiphene_citrate_(Z,E)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111829836-1921654 2_H8_GAP1_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111829836-1921654 2_H8_GAP1_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GG9_01_17228.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8C11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/560-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122200031-1879813 15D11_rep_C_Lamotrigineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122200031-1879813 15D11_rep_C_Lamotrigineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151538721-1576472 Batch7_HARA_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_C8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B06P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151129210-1576266 Batch5_SBC5_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_SERUM_V2_CAT.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201215_LKM_NoBeads_nBut_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092513493-1878866 14H04_rep_B_Viomycin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092513493-1878866 14H04_rep_B_Viomycin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092630461-1878926 14D02_rep_B_Imidureaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092630461-1878926 14D02_rep_B_Imidureaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD1_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153101379-1577224 Batch3_SKMEL5_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/344.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/089_82.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151410019-1576399 Batch6_MOLT4_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151545900-1576478 Batch7_HCC38_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151548290-1924984 4_F7_SNF3_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151548290-1924984 4_F7_SNF3_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150410325-1864788 02H01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150410325-1864788 02H01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control242_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control242_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_19032901_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/225.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD5_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/420.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124722959-1862617 03A10_rep_B_Hydralazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124722959-1862617 03A10_rep_B_Hydralazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3D05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114723649-1875123 12H02_rep_B_Crotamitonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114723649-1875123 12H02_rep_B_Crotamitonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_24_Dorsal_skin_EtOH_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_24_Dorsal_skin_EtOH_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_E10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100504871-1869007 06A02_rep_D_Testosterone_propionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100504871-1869007 06A02_rep_D_Testosterone_propionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121443530-1879483 15H03_rep_A_Moxifloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121443530-1879483 15H03_rep_A_Moxifloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_sample03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/461-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hinT_#2_P6F9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (hinT_#2_P6F9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091755748-1878523 13F08_rep_D_Etilefrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091755748-1878523 13F08_rep_D_Etilefrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145845592-1864056 02H04_rep_A_Didanosineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145845592-1864056 02H04_rep_A_Didanosineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_C10_id_positive.mzML at line 21
index 315 is out of bounds for axis 0 with size 315
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrdA_P4B12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (nrdA_P4B12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_blank_25.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_blank_25.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007681_032118-1CRP6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-060.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-060.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152707788-1577033 Batch2_NCIH292_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/615.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person2_WBC_POS.mzXML at line 689
attributes construct error, line 38, column 71 (Person2_WBC_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_48.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_213.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control185_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control185_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151843817-1576626 Batch7_NCIH2444_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHF14.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNS335_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121414767-1866930 04B08_rep_B_Retinoic_acid_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121414767-1866930 04B08_rep_B_Retinoic_acid_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_RBC2_NEG.mzXML at line 689
attributes construct error, line 38, column 72 (Person4_RBC2_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D4_id_MSn_positive.mzML at line 21
index 697 is out of bounds for axis 0 with size 697
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ynfG_P4B2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (ynfG_P4B2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151653547-1576535 Batch7_SKMES1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112459205-1874098 10G04_rep_D_Clofibric_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112459205-1874098 10G04_rep_D_Clofibric_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD129_P2-A-4_02_2657.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw5_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H11_id_MSn_negative.mzML at line 21
index 338 is out of bounds for axis 0 with size 338
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151733078-1576568 Batch4_DMS53_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/232.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/583.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_95.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_95.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112313144-1873628 10C05_rep_D_Flunixin_meglumineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112313144-1873628 10C05_rep_D_Flunixin_meglumineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/116.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/otsB_#1_P4B2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (otsB_#1_P4B2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122808049-1880097 15F06_rep_D_Losartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122808049-1880097 15F06_rep_D_Losartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123041934-1867712 05B05_rep_B_Sulfisoxazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123041934-1867712 05B05_rep_B_Sulfisoxazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/751.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ5_2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O22_id_MSn_positive.mzML at line 21
index 693 is out of bounds for axis 0 with size 693
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151721869-1925063 4_E11_SNF3_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151721869-1925063 4_E11_SNF3_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092050199-1878660 14G08_rep_A_Ramiprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092050199-1878660 14G08_rep_A_Ramiprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153451720-1868622 06H07_rep_C_Primaquine_diphosphatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153451720-1868622 06H07_rep_C_Primaquine_diphosphatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_154.mzXML at line 689
Premature end of data in tag peaks line 22666, line 22670, column 3655 (20121114_154.mzXML, line 22670)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223753797-1870285 01G09_rep_C_Isoxsuprine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223753797-1870285 01G09_rep_C_Isoxsuprine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152817201-1577091 Batch3_A498_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153412035-1577378 Batch4_NCIH1651_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/50-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G14_id_MSn_positive.mzML at line 21
index 426 is out of bounds for axis 0 with size 426
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_B5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpBud2_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GF5_01_16968.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD3_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAJ14.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092627/ccms_peak/Raw_Spectrum_Files/ALZ_CBM_P_E3E3_AD_31Jan18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_C2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150638094-1924516 2_C2_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150638094-1924516 2_C2_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_15102011_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/6.4_4OI _VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113335252-1922400 2_H5_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113335252-1922400 2_H5_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Hymenobacter_LYG014A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5A018.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/srlQ_P5E6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (srlQ_P5E6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/chbG_#1_P4G8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (chbG_#1_P4G8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G03Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113116218-1874389 11G03_rep_B_Raloxifene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113116218-1874389 11G03_rep_B_Raloxifene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/PYURF interactome/PYURF_CA3_CEV_07122029.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113730467-1922604 3_H2_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113730467-1922604 3_H2_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086252/ccms_peak/PF077_pos/200728_LQ_PPF077_446043Z01_D9_pos.mzML at line 689
Extra content at the end of the document, line 643239, column 1 (200728_LQ_PPF077_446043Z01_D9_pos.mzML, line 643239)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L58cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L58cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122828386-1867610 05F03_rep_A_Debrisoquin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122828386-1867610 05F03_rep_A_Debrisoquin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S104.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S104.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165928804-2227591 Healthy6.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpB_P5A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (glpB_P5A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STE1_30EV_RA2_01_22711.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD3_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_02_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_02_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pncC_P3H10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (pncC_P3H10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_11_P4A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (ctrl_11_P4A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_19040322_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/15.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control36_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control36_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100405425-1868960 06C01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100405425-1868960 06C01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A11_id.mzML at line 21
index 532 is out of bounds for axis 0 with size 532
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113055626-1874373 11D05_rep_B_Novobiocin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113055626-1874373 11D05_rep_B_Novobiocin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223930504-1870360 01H01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223930504-1870360 01H01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case225_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case225_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GB11_01_11643.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114414085-1922962 4_E3_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114414085-1922962 4_E3_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample083_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223917327-1870350 01A07_rep_C_Isoflupredone acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223917327-1870350 01A07_rep_C_Isoflupredone acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151255541-1576337 Batch5_PC14PE6_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_54_RIN_54.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_54_RIN_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/udk_P4D11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (udk_P4D11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30068 - GI-14-450.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_17_CNR_30.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_17_CNR_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case94_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case94_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086335/raw/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Arroz - MSConvert/21Apos.mzML at line 689
Opening and ending tag mismatch: binaryDataArray line 47478 and binary, line 47483, column 2504 (21Apos.mzML, line 47483)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112631447-1922071 4_A8_GPR1_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112631447-1922071 4_A8_GPR1_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_4_B-A2_1_5631.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180412_ES_H3K_batch7_repB_80.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nfsB_#1_P5C9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (nfsB_#1_P5C9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121444864-1879484 15C10_rep_A_Vardenafila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121444864-1879484 15C10_rep_A_Vardenafila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_0124_190125090031.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152745368-1868292 06D02_rep_A_Pefloxacinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152745368-1868292 06D02_rep_A_Pefloxacinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_sample02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201039481-1881746 16A07_rep_B_Amlexanoxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201039481-1881746 16A07_rep_B_Amlexanoxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30146 - GI-16-739.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114837465-1875182 12C06_rep_B_Urapidil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114837465-1875182 12C06_rep_B_Urapidil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K19_id_MSn_negative.mzML at line 21
index 359 is out of bounds for axis 0 with size 359
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152902953-1577130 Batch5_NCIH2347_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_16061440_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111439873-1871494 10H07_rep_B_Lithocholic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111439873-1871494 10H07_rep_B_Lithocholic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/btuR_#1_P3H7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (btuR_#1_P3H7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_97.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_97.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125813251-1877176 13G03_rep_A_Nifekalantb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125813251-1877176 13G03_rep_A_Nifekalantb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H9_id_MSn_positive.mzML at line 21
index 578 is out of bounds for axis 0 with size 578
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-015.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-015.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121024457-1879289 14B01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121024457-1879289 14B01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125936969-1877241 13A02_rep_A_Denatonium_benzoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125936969-1877241 13A02_rep_A_Denatonium_benzoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125655609-1877116 13B03_rep_A_THIP_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125655609-1877116 13B03_rep_A_THIP_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_ehigh (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GG11_01_17107.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yliI_P4D7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (yliI_P4D7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114022598-1922756 3_H11_STE2_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114022598-1922756 3_H11_STE2_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00072679.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092221/ccms_peak/LuxWater_2019-2022/2020/Oct/LUX_SW_OCT_06538_pos.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample062.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152725859-1577048 Batch3_KP4_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/4-guanidinobutanoic_acid_neg.mzXML at line 689
Premature end of data in tag peaks line 10447, line 10451, column 15852 (4-guanidinobutanoic_acid_neg.mzXML, line 10451)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122908697-1875844 08D06_rep_A_Exemestanea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122908697-1875844 08D06_rep_A_Exemestanea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130202448-1877350 13F03_rep_B_Trapidilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130202448-1877350 13F03_rep_B_Trapidilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_132.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_RBC_4h_POS.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer1_RBC_4h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009664_IBD200_E10_A12.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124551865-1862545 03D03_rep_B_Thalidomideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124551865-1862545 03D03_rep_B_Thalidomideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152713779-1577038 Batch2_LOXIMVI_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122509452-1879958 15E10_rep_C_Tripelennamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122509452-1879958 15E10_rep_C_Tripelennamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S49.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S49.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101045844-1869280 07B08_rep_B_Vancomycin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101045844-1869280 07B08_rep_B_Vancomycin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K12_id.mzML at line 21
index 605 is out of bounds for axis 0 with size 605
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/003_CRa_H9M5_M470_Pool_02_low_neg.mzXML at line 689
Premature end of data in tag peaks line 27969, line 27973, column 11767 (003_CRa_H9M5_M470_Pool_02_low_neg.mzXML, line 27973)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control178_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control178_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152005686-1576693 Batch1A_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153709225-1577524 Batch4_ASPC1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_C8_id_positive.mzML at line 21
index 323 is out of bounds for axis 0 with size 323
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223823643-1870308 01D03_rep_C_Epirizoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223823643-1870308 01D03_rep_C_Epirizoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_91.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_1_Dorsal_skin_HO_control_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_1_Dorsal_skin_HO_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151030113-1924716 3_G9_SNF3_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151030113-1924716 3_G9_SNF3_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/784.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152405598-1576883 Batch2_NCIH596_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223842567-1870323 01F05_rep_C_Mefenamic acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223842567-1870323 01F05_rep_C_Mefenamic acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122645800-1880033 15A11_rep_D_Estradiol_Valerateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122645800-1880033 15A11_rep_D_Estradiol_Valerateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200833262-1881653 16F09_rep_A_Valdecoxiba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200833262-1881653 16F09_rep_A_Valdecoxiba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dacD_P3C10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (dacD_P3C10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150551528-1924476 1_E10_RGT2_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150551528-1924476 1_E10_RGT2_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/779.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/052_53.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/FAMEs_C4-C30_2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223118843-1869984 01B01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223118843-1869984 01B01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120921106-1879241 14D06_rep_D_(R)-Propranolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120921106-1879241 14D06_rep_D_(R)-Propranolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079773/ccms_peak/Body16_Swabs/C05_Swab_2012_016_8_C.mzXML at line 689
Opening and ending tag mismatch: peaks line 67645 and scan, line 67662, column 12 (C05_Swab_2012_016_8_C.mzXML, line 67662)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_41_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_41_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sufE_P4C12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (sufE_P4C12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112300215-1921886 3_B2_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112300215-1921886 3_B2_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_blank_22.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_blank_22.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201135968-1877793 09H10_rep_B_Cephalothin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201135968-1877793 09H10_rep_B_Cephalothin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-033_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J9_id_MSn_negative.mzML at line 21
index 328 is out of bounds for axis 0 with size 328
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125206721-1862844 03E02_rep_C_Ranitidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125206721-1862844 03E02_rep_C_Ranitidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dxs_P3B9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (dxs_P3B9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112448073-1874089 10B05_rep_D_Flumethasoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112448073-1874089 10B05_rep_D_Flumethasoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/653.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125632037-1863059 03F02_rep_D_Piroxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125632037-1863059 03F02_rep_D_Piroxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123107760-1875938 08E07_rep_A_Rimantadine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123107760-1875938 08E07_rep_A_Rimantadine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_dilute_190131195925.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K7_id.mzML at line 21
index 489 is out of bounds for axis 0 with size 489
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/201-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E9_id_MSn_negative.mzML at line 21
index 351 is out of bounds for axis 0 with size 351
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B19_id.mzML at line 21
index 538 is out of bounds for axis 0 with size 538
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153638031-1577498 Batch4_SW780_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlB3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlB3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_A2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165834985-2227541 Healthy5.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078960/ccms_peak/SoceGT47-Pmix_SPL-P124-6+5+4_RA4_01_20449.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_242.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD6_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/384.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190108_ES_H3K_batch12_repA_177.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082692/ccms_peak/ST000665/EX00348-lipidomics/Raw data/NEG/Test.mzXML at line 689
Extra content at the end of the document, line 68470, column 1 (Test.mzXML, line 68470)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2A10P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C10_repl4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_G8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091657774-1878477 13A05_rep_D_Methacycline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091657774-1878477 13A05_rep_D_Methacycline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LIM1_50EV_RA6_01_22677.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD3_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S05_dilute_190201032753.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151929942-1867907 05D06_rep_C_Hycanthoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151929942-1867907 05D06_rep_C_Hycanthoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/moaA_P5C1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (moaA_P5C1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150825609-1864986 02G08_rep_D_Nicergolinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150825609-1864986 02G08_rep_D_Nicergolinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-063_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/115.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD3_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223439606-1870136 01H05_rep_B_Amitryptiline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223439606-1870136 01H05_rep_B_Amitryptiline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O16_id_MSn_negative.mzML at line 21
index 363 is out of bounds for axis 0 with size 363
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D10_id_MSn_negative.mzML at line 21
index 332 is out of bounds for axis 0 with size 332
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125033942-1862770 03G02_rep_C_Norfloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125033942-1862770 03G02_rep_C_Norfloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_blank_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J20_id_MSn_positive.mzML at line 21
index 511 is out of bounds for axis 0 with size 511
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_E6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152309049-1576838 Batch2_NCIH522_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D6_id_MSn_positive.mzML at line 21
index 685 is out of bounds for axis 0 with size 685
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153350235-1577360 Batch5_SW620_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112708147-1922103 4_E4_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112708147-1922103 4_E4_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125919241-1877227 13D09_rep_A_Zuclopenthixol_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125919241-1877227 13D09_rep_A_Zuclopenthixol_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075317.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150518402-1864841 02H02_rep_C_Erythromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150518402-1864841 02H02_rep_C_Erythromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C5_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H4_id_MSn_positive.mzML at line 21
index 503 is out of bounds for axis 0 with size 503
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093033660-1879113 14F01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093033660-1879113 14F01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123306434-1876033 08H02_rep_B_Alendronate_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123306434-1876033 08H02_rep_B_Alendronate_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_cell lysate/mzML/Vector_DMSO_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F6_id_MSn_positive.mzML at line 21
index 597 is out of bounds for axis 0 with size 597
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151144618-1865141 02B01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151144618-1865141 02B01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223033858-1869950 01D08_rep_A_Pyrimethamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223033858-1869950 01D08_rep_A_Pyrimethamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H7_id_MSn_positive.mzML at line 21
index 471 is out of bounds for axis 0 with size 471
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/598.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121351119-1879443 15G01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121351119-1879443 15G01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person3_RBC_NEG.mzXML at line 689
attributes construct error, line 38, column 71 (Person3_RBC_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153516933-1868642 06G11_rep_C_Ceforanidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153516933-1868642 06G11_rep_C_Ceforanidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Bosea_LYD010.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100420329-1868972 06C03_rep_D_Zotepineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100420329-1868972 06C03_rep_D_Zotepineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113310553-1874480 11F03_rep_B_Nylidrina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113310553-1874480 11F03_rep_B_Nylidrina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153855036-1577613 Batch6_NCIH1299_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086335/ccms_peak/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/BD - MSConvert/18BDpos.mzML at line 689
Extra content at the end of the document, line 50859, column 1 (18BDpos.mzML, line 50859)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_G5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_blood_1h_POS.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer2_blood_1h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28022021_Batch02_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_130b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079484/ccms_peak/21b.mzXML at line 689
Premature end of data in tag msRun line 5, line 2518, column 1 (21b.mzXML, line 2518)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151922020-1576658 Batch7_NCIH209_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180907_ES_H3K_batch1B_repA_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125023940-1862762 03G04_rep_C_Xylometazoline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125023940-1862762 03G04_rep_C_Xylometazoline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222908350-1869886 01B02_rep_A_Meticraneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222908350-1869886 01B02_rep_A_Meticraneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124422476-1862358 03E11_rep_A_Fenbendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124422476-1862358 03E11_rep_A_Fenbendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124617345-1862565 03A07_rep_B_Mafenide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124617345-1862565 03A07_rep_B_Mafenide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/218.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125705915-1877124 13E08_rep_A_Fursultiamine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125705915-1877124 13E08_rep_A_Fursultiamine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/005_Urea_Day11_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/303.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample223.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152159523-1576783 Batch1_NCIH1703_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151507598-1576447 Batch6_CALU3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130851010-1877672 13D05_rep_C_Cyclopenthiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130851010-1877672 13D05_rep_C_Cyclopenthiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152304829-1868077 05D01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152304829-1868077 05D01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_A12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_P_E3E3_AD_IMS_13Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153653489-1868720 06A11_rep_C_Amphotericin_Ba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153653489-1868720 06A11_rep_C_Amphotericin_Ba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_11P_A10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LIM1_40EV_RA6_01_22676.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atoD_#1_P4C1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (atoD_#1_P4C1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_103a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121734639-1879612 15D01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121734639-1879612 15D01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_UC_021_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sdhD_#3_P3B11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (sdhD_#3_P3B11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V5_LH_PSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_D5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_E7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_B1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G11_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/699.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B8_id_MSn_negative.mzML at line 21
index 252 is out of bounds for axis 0 with size 252
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150112048-1864171 02D06_rep_B_Haloperidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150112048-1864171 02D06_rep_B_Haloperidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H4_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_11_leg_muscle_RESV_skin_POS.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_11_leg_muscle_RESV_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S05_0124_190125020513.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100544699-1869039 07A03_rep_A_Cefotiam_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100544699-1869039 07A03_rep_A_Cefotiam_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_G7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202241994-1878294 10A01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202241994-1878294 10A01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122617333-1867504 05H05_rep_A_Kanamycin_A_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122617333-1867504 05H05_rep_A_Kanamycin_A_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D22_id_MSn_negative.mzML at line 21
index 308 is out of bounds for axis 0 with size 308
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/coaE_P4G4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (coaE_P4G4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151307647-1576347 Batch7_CHAGOK1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-047_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111923101-1872580 10E10_rep_C_Sulfameterb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111923101-1872580 10E10_rep_C_Sulfameterb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200914131-1881683 16G08_rep_A_Risedronic_acid_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200914131-1881683 16G08_rep_A_Risedronic_acid_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111740348-1871633 10F08_rep_C_Alexidine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111740348-1871633 10F08_rep_C_Alexidine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152802314-1868305 06A03_rep_A_Haloproginb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152802314-1868305 06A03_rep_A_Haloproginb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ4_3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153713857-1577528 Batch4_NCIH1666_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_E3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C5_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089848/ccms_peak/Round 3/20210617_nja0922_MGx_H20190756_FungalCrudeExtract_NRRL420_Oats.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000089848/ccms_peak/Round 3/20210617_nja0922_MGx_H20190756_FungalCrudeExtract_NRRL420_Oats.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD3_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152246201-1576820 Batch2_NCIH441_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150403941-1864783 02B05_rep_C_Azathioprineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150403941-1864783 02B05_rep_C_Azathioprineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/QC_mix.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_125.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_125.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201531105-1877963 09C05_rep_C_Loratadineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201531105-1877963 09C05_rep_C_Loratadineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124948027-1862733 03G05_rep_C_Oxymetazoline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124948027-1862733 03G05_rep_C_Oxymetazoline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151413585-1576402 Batch7_CHAGOK1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/406.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_Blood3_NEG.mzXML at line 689
attributes construct error, line 38, column 74 (Person4_Blood3_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_44_NOR_49.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_44_NOR_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130016800-1863246 04B01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130016800-1863246 04B01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111843715-1872068 10B08_rep_C_Trimetozinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111843715-1872068 10B08_rep_C_Trimetozinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample210.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223413256-1870116 01D07_rep_B_Troleandomycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223413256-1870116 01D07_rep_B_Troleandomycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/059_61.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_71_NOR_50.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_71_NOR_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/metL_metK_P5D10_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (metL_metK_P5D10_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145627076-1863944 02E09_rep_A_Spironolactoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145627076-1863944 02E09_rep_A_Spironolactoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHE03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1K015.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125105721-1876850 12F04_rep_C_Primidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125105721-1876850 12F04_rep_C_Primidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152632797-1868236 06D08_rep_A_Digoxina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152632797-1868236 06D08_rep_A_Digoxina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F2_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095538/raw/3dhq_12C_CE10_msAG222_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024767 (3dhq_12C_CE10_msAG222_Aquity_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ycjU_P3A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ycjU_P3A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H3_id_negative.mzML at line 21
index 257 is out of bounds for axis 0 with size 257
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mpaA_#1_P4E7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (mpaA_#1_P4E7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223306711-1870065 01D02_rep_B_Chloramphenicola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223306711-1870065 01D02_rep_B_Chloramphenicola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/QC_group2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GA1_01_16767.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223847606-1870327 01H03_rep_C_Imipramine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223847606-1870327 01H03_rep_C_Imipramine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125354077-1862931 03C09_rep_D_Pentolinium_bitartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125354077-1862931 03C09_rep_D_Pentolinium_bitartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_P_E2E3_AD_02Feb18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124008211-1876371 08G01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124008211-1876371 08G01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170127_056ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/78/b097d2e4a00f5b76a1d9e3cc06e11e/input_file/MMW5_20170127_056ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112357111-1874048 10F11_rep_D_Cinoxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112357111-1874048 10F11_rep_D_Cinoxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/049_51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223601336-1870199 01G07_rep_C_Minaprine dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223601336-1870199 01G07_rep_C_Minaprine dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIAG06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122010219-1879730 15E03_rep_B_Cyclophosphamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122010219-1879730 15E03_rep_B_Cyclophosphamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/adk_P4B3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (adk_P4B3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113123864-1922286 1_E2_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113123864-1922286 1_E2_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153207558-1577277 Batch5_NCIH727_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F20_id_negative.mzML at line 21
index 239 is out of bounds for axis 0 with size 239
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD3_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/46-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112311886-1873627 10C05_rep_D_Flunixin_megluminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112311886-1873627 10C05_rep_D_Flunixin_megluminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180914_ES_H3K_batch2_repC_18.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101833791-1869655 07H01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101833791-1869655 07H01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-qc_med.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hD1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hD1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD5_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/11_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpBud3_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151604917-1924998 4_D5_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151604917-1924998 4_D5_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153518487-1577432 Batch4_977_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hmp_#1_P4H6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (hmp_#1_P4H6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Serratia_liquefaciens_P27.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2C08P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_19032901_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/621.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113045819-1922253 1_H5_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113045819-1922253 1_H5_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nagE_#1_P4A4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (nagE_#1_P4A4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121714719-1867070 04H10_rep_C_Clofilium_tosylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121714719-1867070 04H10_rep_C_Clofilium_tosylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2C07P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150910165-1924647 2_F8_RGT2_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150910165-1924647 2_F8_RGT2_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130050002-1863273 04E09_rep_A_Spiperoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130050002-1863273 04E09_rep_A_Spiperoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3A12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122719587-1880059 15G03_rep_D_Bosentanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122719587-1880059 15G03_rep_D_Bosentanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_blood_24h_POS.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer2_blood_24h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000081039/ccms_peak/raw/MTBLS293/mtab_R1_Dyhram_2014_1017_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7D01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150736753-1864948 02E06_rep_C_Perphenazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150736753-1864948 02E06_rep_C_Perphenazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/117.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/adhP_P3A5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (adhP_P3A5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybdG_P4G8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ybdG_P4G8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_D5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170127_040ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ee/67dc5bcbf6389206c735923ec56c90/input_file/SH10_20170127_040ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122835914-1880119 15F08_rep_D_Vecuronium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122835914-1880119 15F08_rep_D_Vecuronium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD5_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172651254-1889908 stda.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223530374-1870175 01B06_rep_B_Heptaminol hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223530374-1870175 01B06_rep_B_Heptaminol hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_GP24.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222751473-1869828 01F08_rep_A_Benoxinate hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222751473-1869828 01F08_rep_A_Benoxinate hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fldA_P3A3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (fldA_P3A3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/iscA_#1_P5F5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (iscA_#1_P5F5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dxr_P4F5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (dxr_P4F5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100416573-1868969 06E01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100416573-1868969 06E01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person27_RBC_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 81 (Person27_RBC_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kch_P3E10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (kch_P3E10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092040955-1878653 14H11_rep_A_Nadifloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092040955-1878653 14H11_rep_A_Nadifloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/03_D24062013T1259_1399CBU_01QC_A3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case161_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case161_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150245425-1924320 1_A9_RGT2_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150245425-1924320 1_A9_RGT2_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N19_id_MSn_negative.mzML at line 21
index 372 is out of bounds for axis 0 with size 372
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_C4_id_positive.mzML at line 21
index 325 is out of bounds for axis 0 with size 325
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092034456-1878648 14F06_rep_A_Cyclopentolate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092034456-1878648 14F06_rep_A_Cyclopentolate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAJ02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/melA_#1_P4B11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (melA_#1_P4B11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_184.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_184.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170127_065ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/90/6c6355dd2e47d72288d54ebd9cf445/input_file/MMW6_20170127_065ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417142025.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G8_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122917343-1875851 08C05_rep_A_Yohimbine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122917343-1875851 08C05_rep_A_Yohimbine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_90.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_90.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A3Pa5mm_black_P1-B-3_01_23067.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125717612-1877133 13H03_rep_A_Articaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125717612-1877133 13H03_rep_A_Articaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_19032901_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111826914-1872055 10E01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111826914-1872055 10E01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125245643-1876925 12B05_rep_D_Butylparabena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125245643-1876925 12B05_rep_D_Butylparabena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101312087-1869397 07F10_rep_B_Thiocolchicosidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101312087-1869397 07F10_rep_B_Thiocolchicosidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30253 - GI-19-002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111922192-1921698 2_F11_GAP1_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111922192-1921698 2_F11_GAP1_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yehX_P5G3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (yehX_P5G3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F7_id.mzML at line 21
index 587 is out of bounds for axis 0 with size 587
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-145_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hcaC_P6A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (hcaC_P6A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/430.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223631596-1870222 01C03_rep_C_Panthenol (D)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223631596-1870222 01C03_rep_C_Panthenol (D)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122744355-1875778 08A08_rep_A_Itraconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122744355-1875778 08A08_rep_A_Itraconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/357.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/TAA204_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7B05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw_Baseline_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120926370-1879245 14F03_rep_D_Ranolazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120926370-1879245 14F03_rep_D_Ranolazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5A02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_C1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_6_Liver_HO_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 86 (Mouse_6_Liver_HO_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/5_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_global_LFD5_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_C4_id_positive.mzML at line 21
index 349 is out of bounds for axis 0 with size 349
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/050_52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122232541-1867322 04G05_rep_D_Econazole_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122232541-1867322 04G05_rep_D_Econazole_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_120_1A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_59.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2F07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_155.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092153/peak/Sample0009.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121803221-1879634 15F05_rep_B_Ibudilasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121803221-1879634 15F05_rep_B_Ibudilasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GC10_01_16813.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170125_007EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/dd/6184162fe9f1dabdc7f37123fb64ff/input_file/QC_20170125_007EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B11Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ10061432.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170125_013EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ef/3a74865b148a0a858ac98a6cdb81b7/input_file/SH10_20170125_013EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2A07Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I13_id.mzML at line 21
index 537 is out of bounds for axis 0 with size 537
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw3_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/69-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152427307-1576900 Batch1_NCIH1437_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125618380-1863048 03C02_rep_D_Ampyronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125618380-1863048 03C02_rep_D_Ampyronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B12Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101132418-1869317 07H08_rep_B_Dirithromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101132418-1869317 07H08_rep_B_Dirithromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/637.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_24_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_24_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (11).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1132.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1132.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7E08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_HT_009_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_2_male_2022_1017_Michael_neg-0.0020.mzML at line 689
Premature end of data in tag binary line 22201, line 22201, column 1594476 (2_2_male_2022_1017_Michael_neg-0.0020.mzML, line 22201)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/903.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_C7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009608_IBD200_E16_A7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-CCM-PA-QC-16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113406694-1922428 2_C9_IZH2_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113406694-1922428 2_C9_IZH2_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124210498-1862253 03B03_rep_A_Etofyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124210498-1862253 03B03_rep_A_Etofyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_E11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1017.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_A7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_F9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/011_20uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150418024706.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223949346-2227730 PAT45.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122158690-1879812 15D11_rep_C_Lamotriginea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122158690-1879812 15D11_rep_C_Lamotriginea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/plsX_#2_P5C2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (plsX_#2_P5C2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET91.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET91.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_105a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224049565-1870420 01C09_rep_D_Ethambutol dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224049565-1870420 01C09_rep_D_Ethambutol dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123627156-1876195 08A03_rep_C_Mevastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123627156-1876195 08A03_rep_C_Mevastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112735081-1922127 4_C8_GPR1_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112735081-1922127 4_C8_GPR1_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007662_032118-1Thr6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYD005.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/14_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190109_ES_H3K_batch12_repB_174.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yihP_#1_P4D2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (yihP_#1_P4D2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152057472-1576734 Batch1_NCIH1975_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223314488-1870071 01A04_rep_B_Acetazolamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223314488-1870071 01A04_rep_B_Acetazolamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_E7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_E7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/659.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30132 - GI-16-336.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR231_5h2a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 203791, column 5193 (pBpumR231_5h2a.mzML, line 203791)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K7_id_negative.mzML at line 21
index 235 is out of bounds for axis 0 with size 235
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114254506-1922891 4_H2_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114254506-1922891 4_H2_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007648_032118-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090773/peak/B2_EC_P_NEG_QC_Cond_MSMS_AutoMSMS_10eV_1.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000090773/peak/B2_EC_P_NEG_QC_Cond_MSMS_AutoMSMS_10eV_1.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ5_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122433556-1867420 04A02_rep_D_Mexiletine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122433556-1867420 04A02_rep_D_Mexiletine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case81_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case81_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201051584-1881755 16A01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201051584-1881755 16A01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I8_id.mzML at line 21
index 518 is out of bounds for axis 0 with size 518
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mhpC_P3H11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (mhpC_P3H11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112235126-1921864 3_H5_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112235126-1921864 3_H5_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153322787-1577338 Batch5_NCIH1650_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_O3_id_MSn_negative.mzML at line 21
index 395 is out of bounds for axis 0 with size 395
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_G9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_E6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224326345-1870543 01B07_rep_D_Sulfathiazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224326345-1870543 01B07_rep_D_Sulfathiazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ10071403.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114815743-1875164 12B01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114815743-1875164 12B01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151334280-1924875 3_C5_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151334280-1924875 3_C5_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_elow (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121410869-1866927 04H02_rep_B_Ifenprodil_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121410869-1866927 04H02_rep_B_Ifenprodil_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dcyD_#3_P4G11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (dcyD_#3_P4G11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw5_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122138158-1867279 04G10_rep_D_Amodiaquin_dihydrochloride_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122138158-1867279 04G10_rep_D_Amodiaquin_dihydrochloride_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD6_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD6_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092151303-1878707 14A06_rep_A_Sertaconazole_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092151303-1878707 14A06_rep_A_Sertaconazole_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_E2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_blank_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d8_287_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 58456, column 1 (SysVirol_IFT001_Cal04RG_d8_287_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 58456)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113101928-1922267 1_A10_IZH2_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113101928-1922267 1_A10_IZH2_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person17_plasma_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person17_plasma_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165757665-2227507 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_C5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C1_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_E12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/katG_P3C10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (katG_P3C10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1G05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150647527-1924524 2_C1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150647527-1924524 2_C1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD5_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121711797-1879595 15D05_rep_A_Ambrisentanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121711797-1879595 15D05_rep_A_Ambrisentanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007514_031618-0.01Thr4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control91_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control91_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113519503-1874546 11C10_rep_C_Dimethadionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113519503-1874546 11C10_rep_C_Dimethadionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190122_ES_H3K_batch15_repA_124.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tdcD_#1_P4B8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (tdcD_#1_P4B8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNQ525_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uxaC_#2_P4H8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (uxaC_#2_P4H8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112335889-1874031 10A04_rep_D_Phenethicillin_potassium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112335889-1874031 10A04_rep_D_Phenethicillin_potassium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210112_AD_51.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNP082_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dctA_#3_P6H11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (dctA_#3_P6H11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007703_032218-5CRP6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152725977-1868277 06C05_rep_A_Cephalosporanic_acid,_7-aminob.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152725977-1868277 06C05_rep_A_Cephalosporanic_acid,_7-aminob.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gpt_P3C9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (gpt_P3C9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_01_liver_control_oral_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_01_liver_control_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114208680-1922850 4_C11_STE2_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114208680-1922850 4_C11_STE2_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092640799-1878934 14A01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092640799-1878934 14A01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_E9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124558290-1862550 03E02_rep_B_Ranitidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124558290-1862550 03E02_rep_B_Ranitidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007526_031618-1Thr1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc2_T0_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_115_1C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201219017-1877824 09H09_rep_B_Fluorometholonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201219017-1877824 09H09_rep_B_Fluorometholonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L62cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L62cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153916509-1577631 Batch7_NCIH441_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152330453-1576855 Batch1_LK2_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114104809-1874823 11H01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114104809-1874823 11H01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_mock_d1_290_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag peaks line 31675, line 31679, column 3565 (SysVirol_IFT001_mock_d1_290_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 31679)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/002_Urea_Day14_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K6_id_MSn_positive.mzML at line 21
index 522 is out of bounds for axis 0 with size 522
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101940682-1869709 07G03_rep_D_Probenecida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101940682-1869709 07G03_rep_D_Probenecida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A16_id_negative.mzML at line 21
index 247 is out of bounds for axis 0 with size 247
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150604890-1864877 02A07_rep_C_Acyclovirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150604890-1864877 02A07_rep_C_Acyclovirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/TM-plasma-VLDL-12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybhA_P3F5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ybhA_P3F5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201321014-1881867 16B10_rep_B_Felbamatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201321014-1881867 16B10_rep_B_Felbamatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample167.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153554847-1868672 06G09_rep_C_Neostigmine_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153554847-1868672 06G09_rep_C_Neostigmine_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201109998-1877774 09F11_rep_B_Cefmetazole_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201109998-1877774 09F11_rep_B_Cefmetazole_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/30_D25062013T0200_1399CBU_0006_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8D08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case183_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case183_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122844085-1867622 05E03_rep_A_Betamethasonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122844085-1867622 05E03_rep_A_Betamethasonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1455.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1455.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152216262-1868040 05G02_rep_D_Lidoflazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152216262-1868040 05G02_rep_D_Lidoflazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123147677-1867764 05A06_rep_B_Ascorbic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123147677-1867764 05A06_rep_B_Ascorbic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101221132-1869356 07B05_rep_B_Propylthiouracilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101221132-1869356 07B05_rep_B_Propylthiouracilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201352910-1877893 09E02_rep_C_Pranoprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201352910-1877893 09E02_rep_C_Pranoprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125211535-1862848 03G06_rep_C_Nifenazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125211535-1862848 03G06_rep_C_Nifenazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152343091-1868106 05F01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152343091-1868106 05F01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ampD_P3F11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ampD_P3F11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaY_#1_P5E6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (waaY_#1_P5E6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-23d.mzXML at line 689
Premature end of data in tag peaks line 948, line 952, column 7674 (YnYn-23d.mzXML, line 952)
Error processing file: /data/datasets/server/MassIVE/MSV000080071/ccms_peak/Dataset 1/Positive1/._NZ Lichen_P_1_lichen_04_F 2_GB8_01_24918.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151750944-1576582 Batch3_5637_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114139765-1922824 4_B1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114139765-1922824 4_B1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152514264-1868175 05H03_rep_D_Ketanserin_tartrate_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152514264-1868175 05H03_rep_D_Ketanserin_tartrate_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_C8_id_positive.mzML at line 21
index 312 is out of bounds for axis 0 with size 312
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124201476-1876461 08D02_rep_D_Emedastineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124201476-1876461 08D02_rep_D_Emedastineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151226815-1576313 Batch5_NCIH2135_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD5_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD2_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_G8_id_negative.mzML at line 21
index 270 is out of bounds for axis 0 with size 270
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_02_dorsal_skin_control_oral_POS.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_02_dorsal_skin_control_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/444.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113351890-1874513 11F06_rep_B_Beclomethasone_dipropionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113351890-1874513 11F06_rep_B_Beclomethasone_dipropionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysZ_#3_P5C6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (cysZ_#3_P5C6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated8hA2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated8hA2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxP_P3C12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (lpxP_P3C12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153253318-1577314 Batch4_NCIH2286_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudF_P3G11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (nudF_P3G11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152728287-1577050 Batch1_HCC15_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/002_Urea_Day9_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112229827-1873593 10D08_rep_D_Chlorotrianisenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112229827-1873593 10D08_rep_D_Chlorotrianisenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/03_D24062013T1259_1399CBU_01QC_A3.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150440107-1864811 02H10_rep_C_Dihydrostreptomycin sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150440107-1864811 02H10_rep_C_Dihydrostreptomycin sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_N14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087572/raw/mzML/NEG_MSMS_mzML/DOM_Interlab-LC-MS_Lab20_PPL-blank_Neg_MS2.mzML at line 689
Premature end of data in tag indexedmzML line 2, line 198679, column 1 (DOM_Interlab-LC-MS_Lab20_PPL-blank_Neg_MS2.mzML, line 198679)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/005_1020_3_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/642.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ribA_P4F6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ribA_P4F6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/20221212_carryover_test_noISTD_PLASMA_sample03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mdh_P5G7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (mdh_P5G7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std c 003a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bioH_#1_P4C9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (bioH_#1_P4C9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pyrI_P4D12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (pyrI_P4D12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1217.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1217.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113135324-1874404 11G08_rep_B_Paromomycin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113135324-1874404 11G08_rep_B_Paromomycin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151410019-1576399 Batch6_MOLT4_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094202/ccms_peak/3DMM_pos_raw/Plate1and2/P2_H3.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114618042-1875072 12D11_rep_A_L(-)-vesamicol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114618042-1875072 12D11_rep_A_L(-)-vesamicol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100317441-1868922 06D11_rep_D_Epiandrosteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100317441-1868922 06D11_rep_D_Epiandrosteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/691.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_C11_id_positive.mzML at line 21
index 338 is out of bounds for axis 0 with size 338
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_11P_A4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_18072701_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28022021_Batch02_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092731620-1878973 14B06_rep_B_Piperidolate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092731620-1878973 14B06_rep_B_Piperidolate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nupG_P4C12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (nupG_P4C12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/MS2/SCSS_4 REPS POS_NEG_COMPLETE/SC_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/MS2/SCSS_4 REPS POS_NEG_COMPLETE/SC_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100840263-1869180 07G10_rep_A_Trimetazidine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100840263-1869180 07G10_rep_A_Trimetazidine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123020268-1867697 05G10_rep_B_Ketoconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123020268-1867697 05G10_rep_B_Ketoconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI6_5_7_1_876.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dadA_#1_P4E9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (dadA_#1_P4E9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122649447-1867530 05D11_rep_A_Droperidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122649447-1867530 05D11_rep_A_Droperidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083203.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/360.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/568-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151458769-1576440 Batch6_CALU3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_115a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR17_5h3a.mzML at line 689
Opening and ending tag mismatch: binary line 129346 and binaryDataArray, line 129350, column 31 (pBlateR17_5h3a.mzML, line 129350)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201451340-1881935 16E09_rep_C_Homoveratrylaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201451340-1881935 16E09_rep_C_Homoveratrylaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/16_D24062013T1915_1399CBU_0015_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145723873-1863990 02F11_rep_A_Tetracycline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145723873-1863990 02F11_rep_A_Tetracycline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0035_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170127_044ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/76/9fee15c2c394b774f92e4f61cf6a52/input_file/SH9_20170127_044ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purU_#1_P5B10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (purU_#1_P5B10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_11_Liver_Ma_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 87 (Mouse_11_Liver_Ma_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/201901027_ES_H3K_batch15B_repB_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1101.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Methylobacterium_LYG013A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A4_id_MSn_positive.mzML at line 21
index 568 is out of bounds for axis 0 with size 568
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28022021_Batch02_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112238866-1873600 10G10_rep_D_Drofenine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112238866-1873600 10G10_rep_D_Drofenine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223643465-1870231 01G02_rep_C_Morantel tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223643465-1870231 01G02_rep_C_Morantel tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/262.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201411881-1881905 16A07_rep_C_Amlexanoxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201411881-1881905 16A07_rep_C_Amlexanoxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_10_P3A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (ctrl_10_P3A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009581_IBD200_E14_A11.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150158840-1864688 02C06_rep_B_Danazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150158840-1864688 02C06_rep_B_Danazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNS580_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM6C006.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/462-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202004315-1878170 09D07_rep_D_Beta-Escina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202004315-1878170 09D07_rep_D_Beta-Escina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113657058-1874624 11H01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113657058-1874624 11H01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_CABIN_sample07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_15_P4A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (ctrl_15_P4A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1K010.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165724808-2227477 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079679/ccms_peak/SputumvsFood/240_FF6_pH8_BB4_01_18600.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7G08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F3_id_MSn_negative.mzML at line 21
index 321 is out of bounds for axis 0 with size 321
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151249583-1576332 Batch5_HCC1187_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlB3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlB3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ09151420.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/moaD_#1_P4H1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (moaD_#1_P4H1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152945383-1577166 Batch3_T24_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152802996-1577079 Batch3_EPLC272H_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153200009-1577271 Batch3_KU1919_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150831888-1924614 2_F1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150831888-1924614 2_F1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122059993-1879768 15E01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122059993-1879768 15E01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1148.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_11_liver_RESV_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_11_liver_RESV_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151319661-1576357 Batch7_HOP62_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fadB_P6B9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (fadB_P6B9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151123624-1576262 Batch5_SHP77_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_E5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/other/GNPS00004 MSMS-Chooser Template - MSMS-Chooser Submission.tsv at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBmegR23h1b.mzML at line 689
Opening and ending tag mismatch: binary line 249550 and spectrum, line 249600, column 20 (pBmegR23h1b.mzML, line 249600)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike3_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100715529-1869113 07F01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100715529-1869113 07F01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153525873-1577438 Batch5_HCT116_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152646452-1577015 Batch1_NCIH1395_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_127.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_E3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/plsB_P3B12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (plsB_P3B12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R124h1a.mzML at line 689
Opening and ending tag mismatch: binary line 124400 and scanWindow, line 124401, column 30 (pBlichMO17R124h1a.mzML, line 124401)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170127_029ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/3c/64bd0af107d421b0bd640f09ca9ce6/input_file/MMW3_20170127_029ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L4_id_MSn_positive.mzML at line 21
index 754 is out of bounds for axis 0 with size 754
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153613548-1868687 06F10_rep_C_Butalbitalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153613548-1868687 06F10_rep_C_Butalbitalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std b 100a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD2_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145732496-1863997 02G07_rep_A_Tamoxifen citratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145732496-1863997 02G07_rep_A_Tamoxifen citratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151219585-1576307 Batch5_NCIH1755_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thrC_#3_P4F8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (thrC_#3_P4F8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/361.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N18_id.mzML at line 21
index 519 is out of bounds for axis 0 with size 519
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD5_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092411239-1878817 14H01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092411239-1878817 14H01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152001777-1576690 Batch1_HCC1806_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_17111316_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_131_3B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125010036-1876809 12D11_rep_C_L(-)-vesamicol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125010036-1876809 12D11_rep_C_L(-)-vesamicol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114952967-1875243 12A11_rep_B_Esmolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114952967-1875243 12A11_rep_B_Esmolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123712585-1876231 08G10_rep_C_Aniracetamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123712585-1876231 08G10_rep_C_Aniracetamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G5_id_MSn_positive.mzML at line 21
index 549 is out of bounds for axis 0 with size 549
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OAW5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151739123-1576573 Batch7_RXF393_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ubiF_P4E8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ubiF_P4E8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101321009-1869404 07H09_rep_B_Gliclazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101321009-1869404 07H09_rep_B_Gliclazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151411202-1924907 4_E7_SNF3_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151411202-1924907 4_E7_SNF3_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIAI07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125629514-1863057 03A08_rep_D_Riluzole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125629514-1863057 03A08_rep_D_Riluzole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narU_#2_P4E3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (narU_#2_P4E3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201700541-1878030 09D08_rep_C_Thiamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201700541-1878030 09D08_rep_C_Thiamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H20_id_negative.mzML at line 21
index 255 is out of bounds for axis 0 with size 255
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113750314-1922621 3_H1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113750314-1922621 3_H1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201045220-1877756 09F06_rep_B_Venlafaxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201045220-1877756 09F06_rep_B_Venlafaxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_42.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_42.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093140/raw/210225_M138_01_Teil2_HILIC_pos_387.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD4_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNQ865_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlD3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlD3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112349765-1874042 10B06_rep_D_Flecainide_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112349765-1874042 10B06_rep_D_Flecainide_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxT_P5E7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (lpxT_P5E7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151256046-1924842 3_H1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151256046-1924842 3_H1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223301382-1870061 01C09_rep_B_Ethambutol dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223301382-1870061 01C09_rep_B_Ethambutol dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223615636-1870210 01C08_rep_C_Doxylamine succinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223615636-1870210 01C08_rep_C_Doxylamine succinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100826512-1869169 07G11_rep_A_Parthenolidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100826512-1869169 07G11_rep_A_Parthenolidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/472-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample002_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_F4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD2_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ2_7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gpr_P3G11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (gpr_P3G11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170127_028ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/04/a2ebe5819b386ebe9e7b0c5684e4f8/input_file/SH10_20170127_028ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG009B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1083.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223932912-2227716 Healthy3.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/3_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151618266-1576505 Batch7_7860_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121120442-1879331 14E09_rep_D_(+,-)-Synephrineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121120442-1879331 14E09_rep_D_(+,-)-Synephrineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082735/ccms_peak/ST000664/EX00347-lipidomics/Raw data/NEG/BATCH1/20150318_Test.mzXML at line 689
Specification mandates value for attribute precur, line 1691, column 30 (20150318_Test.mzXML, line 1691)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124014562-1876376 08C10_rep_D_Azelastine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124014562-1876376 08C10_rep_D_Azelastine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_16_male_2022_1017_Michael_neg-0.0036.mzML at line 689
Premature end of data in tag binary line 20073, line 20073, column 1821539 (2_16_male_2022_1017_Michael_neg-0.0036.mzML, line 20073)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113442381-1922459 2_H9_IZH2_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113442381-1922459 2_H9_IZH2_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151305226-1576345 Batch6_NCIH1155_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102044153-1869761 07C07_rep_D_Sisomicin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102044153-1869761 07C07_rep_D_Sisomicin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ykgG_#1_P4C2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (ykgG_#1_P4C2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_139.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_G5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/006_Soil_500mMIntra_1_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cydX_P3D10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (cydX_P3D10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F8_id.mzML at line 21
index 541 is out of bounds for axis 0 with size 541
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125728903-1877142 13D07_rep_A_Prothionamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125728903-1877142 13D07_rep_A_Prothionamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079130/ccms_peak/AIN Coral TNF Experiment mzXML/AIN261_RF9_01_2111.mzXML at line 689
Premature end of data in tag peaks line 116, line 116, column 7095 (AIN261_RF9_01_2111.mzXML, line 116)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_G2_id_negative.mzML at line 21
index 199 is out of bounds for axis 0 with size 199
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101012263-1869253 07H04_rep_B_Pentamidine_isethionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101012263-1869253 07H04_rep_B_Pentamidine_isethionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092932480-1879068 14E04_rep_C_Isosorbide_mononitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092932480-1879068 14E04_rep_C_Isosorbide_mononitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151432633-1576418 Batch6_HCC1937_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125040316-1862775 03H06_rep_C_Carmofurb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125040316-1862775 03H06_rep_C_Carmofurb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112613660-1922055 4_C1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112613660-1922055 4_C1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_HT_061_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_DPKS_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101715758-1869591 07G03_rep_C_Probenecida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101715758-1869591 07G03_rep_C_Probenecida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_10_Dorsal_skin_Ma_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 93 (Mouse_10_Dorsal_skin_Ma_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fucK_#3_P5D9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (fucK_#3_P5D9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_blank_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121904377-1867156 04G11_rep_C_Mebeverine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121904377-1867156 04G11_rep_C_Mebeverine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L4_id_MSn_positive.mzML at line 21
index 542 is out of bounds for axis 0 with size 542
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122319154-1867360 04A01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122319154-1867360 04A01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR231_5h2a.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113841664-1922666 3_F3_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113841664-1922666 3_F3_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113911078-1922692 3_B8_STE2_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113911078-1922692 3_B8_STE2_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111601759-1921526 1_H1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111601759-1921526 1_H1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4T5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4T5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170207_057EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/04/99a5c0f032aefed53d45cd4a2f824d/input_file/MMW6_20170207_057EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_RBC_4h_POS.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer2_RBC_4h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130251340-1877388 13C06_rep_B_Guaiacolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130251340-1877388 13C06_rep_B_Guaiacolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089617/ccms_peak/HR_Treatment_Replicate2_20210103034635.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170127_069ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/d5/252acf88ee88c0cde01a0b171c677c/input_file/MMW6_20170127_069ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYD021.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202349937-1878348 10C07_rep_A_Glycopyrrolatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202349937-1878348 10C07_rep_A_Glycopyrrolatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L59cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L59cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124600150-1876651 09C03_rep_A_D,L-Penicillamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124600150-1876651 09C03_rep_A_D,L-Penicillamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112025062-1873014 10F11_rep_C_Cinoxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112025062-1873014 10F11_rep_C_Cinoxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/5.5_ITA _VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_008ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/df/2c914bb3af738f47e2c3499cba61a2/input_file/QC_20170209_008ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125750978-1877159 13D10_rep_A_Proguanil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125750978-1877159 13D10_rep_A_Proguanil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F3_id.mzML at line 21
index 557 is out of bounds for axis 0 with size 557
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122705584-1880048 15B07_rep_D_Caffeinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122705584-1880048 15B07_rep_D_Caffeinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170209_067ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a6/c4854eb9f1302d19e69353b4702c15/input_file/SH8_20170209_067ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU49.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD1_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yibQ_#1_P5E9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (yibQ_#1_P5E9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/znuB_#3_P4H8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (znuB_#3_P4H8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_D3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_A5_id_negative.mzML at line 21
index 186 is out of bounds for axis 0 with size 186
Error processing file: /data/datasets/server/MassIVE/MSV000082098/raw/DC AcOEt pos.mzML at line 689
Premature end of data in tag binary line 288, line 288, column 24062 (DC AcOEt pos.mzML, line 288)
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ10081451.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122809819-1875798 08B07_rep_A_Acetopromazine_maleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122809819-1875798 08B07_rep_A_Acetopromazine_maleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Pseudomonas_sp_P13_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122809337-1880098 15D06_rep_D_Triclosana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122809337-1880098 15D06_rep_D_Triclosana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114251196-1922888 4_G11_STE2_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114251196-1922888 4_G11_STE2_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/53-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_115.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHJ03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202429385-1878379 10C05_rep_A_Flunixin_meglumineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202429385-1878379 10C05_rep_A_Flunixin_meglumineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d3_281_lipid__Neg_17Sep13_13-07-01.mzXML at line 689
Premature end of data in tag peaks line 42227, line 42231, column 3565 (SysVirol_IFL001_1918_d3_281_lipid__Neg_17Sep13_13-07-01.mzXML, line 42231)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine7cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine7cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD2_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metA_#1_P4D11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (metA_#1_P4D11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_LCT22.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165839299-2227545 PAT37.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111742518-1921613 1_G5_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111742518-1921613 1_G5_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009505_IBD200_E10_A1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113709784-1874634 11G02_rep_C_Gabapentina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113709784-1874634 11G02_rep_C_Gabapentina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-cc6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/BUD2_50EV_RA5_01_22588.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GH11_01_17122.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_F8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113334136-1922399 2_A9_IZH2_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113334136-1922399 2_A9_IZH2_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_D7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152231210-1576808 Batch2_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_259.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H7_id_MSn_negative.mzML at line 21
index 294 is out of bounds for axis 0 with size 294
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124003154-1876367 08G11_rep_D_Dimethisoquin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124003154-1876367 08G11_rep_D_Dimethisoquin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBsubR131_5h3b.mzML at line 689
error parsing attribute name, line 154949, column 27 (pBsubR131_5h3b.mzML, line 154949)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153210435-1868495 06D04_rep_B_Cyanocobalaminb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153210435-1868495 06D04_rep_B_Cyanocobalaminb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092927530-1879064 14A07_rep_C_Repaglinidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092927530-1879064 14A07_rep_C_Repaglinidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpBud2_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_C3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145856928-1864065 02A09_rep_A_Amidopyrinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145856928-1864065 02A09_rep_A_Amidopyrinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202448387-1878394 10E09_rep_A_Vidarabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202448387-1878394 10E09_rep_A_Vidarabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_78.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_374.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J16_id_MSn_negative.mzML at line 21
index 336 is out of bounds for axis 0 with size 336
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200719272-1881599 16B01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200719272-1881599 16B01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122653231-1867533 05A07_rep_A_Methyldopa_(L,-)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122653231-1867533 05A07_rep_A_Methyldopa_(L,-)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152139252-1576767 Batch2_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A20_id_MSn_negative_20240406184606.mzML at line 21
index 253 is out of bounds for axis 0 with size 253
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GA6_01_17014.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/626.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130805032-1877635 13C05_rep_C_Oxfendazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130805032-1877635 13C05_rep_C_Oxfendazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/559-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J3_id_MSn_positive.mzML at line 21
index 689 is out of bounds for axis 0 with size 689
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gsiB_P4A12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (gsiB_P4A12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092134477-1878694 14D11_rep_A_Methiazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092134477-1878694 14D11_rep_A_Methiazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224314212-1870533 01E08_rep_D_Ticlopidine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224314212-1870533 01E08_rep_D_Ticlopidine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2B09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_111.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124511408-1862396 03A01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124511408-1862396 03A01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I12_id_MSn_negative.mzML at line 21
index 304 is out of bounds for axis 0 with size 304
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201648664-1878021 09C10_rep_C_Zonisamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201648664-1878021 09C10_rep_C_Zonisamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4H09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/D-altrose_neg.mzXML at line 689
Premature end of data in tag peaks line 7567, line 7571, column 7663 (D-altrose_neg.mzXML, line 7571)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/853.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_160.mzXML at line 689
Premature end of data in tag msRun line 5, line 20649, column 1 (20121114_160.mzXML, line 20649)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d3_275_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 38970, column 1 (SysVirol_IFT001_Cal04RG_d3_275_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 38970)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GA9_01_11456.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1786.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1786.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124850243-1862687 03H04_rep_B_Hyoscyamine_(L)_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124850243-1862687 03H04_rep_B_Hyoscyamine_(L)_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD3_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD3_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114135335-1922820 4_C3_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114135335-1922820 4_C3_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122423640-1867412 04D09_rep_D_Cinnarizinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122423640-1867412 04D09_rep_D_Cinnarizinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfI_P3H5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (hyfI_P3H5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007654_032118-1Thr2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201727103-1878050 09E07_rep_C_Tigecyclinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201727103-1878050 09E07_rep_C_Tigecyclinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_E5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D11_id_MSn_negative.mzML at line 21
index 326 is out of bounds for axis 0 with size 326
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152351601-1576872 Batch2_NCIH460_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_02_leg_skin_control_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_02_leg_skin_control_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aceB_P3H9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (aceB_P3H9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rutC_#1_P5H9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (rutC_#1_P5H9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/341.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET27.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET27.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092721441-1878965 14A04_rep_B_Penbutolol_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092721441-1878965 14A04_rep_B_Penbutolol_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/869.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_17_AC+_47.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151913451-1867894 05H02_rep_C_Terbutaline_hemisulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151913451-1867894 05H02_rep_C_Terbutaline_hemisulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Acido_24295_A1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145826995-1864041 02E07_rep_A_Mefloquine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145826995-1864041 02E07_rep_A_Mefloquine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113523188-1874549 11B10_rep_C_Moxalactam_disodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113523188-1874549 11B10_rep_C_Moxalactam_disodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/795.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GG11_01_11730.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153147446-1577261 Batch4_NCIH2286_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121557387-1867009 04B02_rep_B_Chlorothiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121557387-1867009 04B02_rep_B_Chlorothiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1127.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1127.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_H8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082718/ccms_peak/ST000666/EX00376-lipidomics/Raw data/POS/20141119_Authentic.mzXML at line 689
Specification mandates value for attribute rete, line 31419, column 19 (20141119_Authentic.mzXML, line 31419)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113520399-1922492 2_F7_IZH2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113520399-1922492 2_F7_IZH2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_05_AC+_25.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H5_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190125154303.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/cal_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111439545-1921070 1_C1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111439545-1921070 1_C1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNH287_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132939398-1733915 1pool Wound5D 1 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111416469-1921051 1_H4_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111416469-1921051 1_H4_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_24_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_24_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-048_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike4_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_17111316_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_5_40x_2022_1006_Michael_pos-0.0023.mzML at line 689
Premature end of data in tag binary line 3117, line 3117, column 879768 (1_5_40x_2022_1006_Michael_pos-0.0023.mzML, line 3117)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH60.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G09P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlA1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlA1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000087772/raw/190516_LP_JH_Blank6_pos.mzML at line 689
Extra content at the end of the document, line 278304, column 1 (190516_LP_JH_Blank6_pos.mzML, line 278304)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-7-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153156212-1577268 Batch4_DMS114_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200544108-1881528 16A01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200544108-1881528 16A01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201111859-1881770 16G06_rep_B_Ampiroxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201111859-1881770 16G06_rep_B_Ampiroxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153641715-1577501 Batch4_NCIH1563_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GF10_01_11538.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130746696-1877620 13H08_rep_C_Zalcitabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130746696-1877620 13H08_rep_C_Zalcitabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/temp/SYL-TSQ-13-06-21_L78cbz.mzXML at line 689
Premature end of data in tag msRun line 5, line 568501, column 1 (SYL-TSQ-13-06-21_L78cbz.mzXML, line 568501)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_89.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_89.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_224.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/155_124.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_0126_190128213927.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_2_B_rep_4_B-B6_1_5835.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD120_P1-F-4_02_2612.mzML at line 255
Error -3 while decompressing data: incorrect data check
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151035979-1865087 02C02_rep_D_R(-) Apomorphine hydrochloride hemihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151035979-1865087 02C02_rep_D_R(-) Apomorphine hydrochloride hemihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170125_029EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/cf/c8a5af989cf3390eb3adf05042e75e/input_file/SH7_20170125_029EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P20_id_MSn_negative.mzML at line 21
index 327 is out of bounds for axis 0 with size 327
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E6_id_MSn_positive.mzML at line 21
index 726 is out of bounds for axis 0 with size 726
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/CORN_AD5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A5_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET71.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET71.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170209_055ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/76/d7e68914408286014f59309f80419e/input_file/SH10_20170209_055ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122939329-1867666 05A11_rep_B_Bisoprolol_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122939329-1867666 05A11_rep_B_Bisoprolol_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121641022-1867043 04G05_rep_B_Econazole_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121641022-1867043 04G05_rep_B_Econazole_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151445398-1924936 4_F11_SNF3_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151445398-1924936 4_F11_SNF3_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123234739-1876008 08D04_rep_B_Zaleplona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123234739-1876008 08D04_rep_B_Zaleplona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/TAA040_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_61.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K20_id.mzML at line 21
index 517 is out of bounds for axis 0 with size 517
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control31_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control31_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150225146-1864708 02F09_rep_B_Terfenadinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150225146-1864708 02F09_rep_B_Terfenadinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_75.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD2_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0007_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152914685-1577140 Batch5_HOP92_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152705570-1868261 06E09_rep_A_Hydroxytacrine_maleate_(R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152705570-1868261 06E09_rep_A_Hydroxytacrine_maleate_(R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GA10_01_11457.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151046619-1924730 3_D4_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151046619-1924730 3_D4_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122718284-1880058 15G03_rep_D_Bosentana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122718284-1880058 15G03_rep_D_Bosentana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/idi_#2_P5E6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (idi_#2_P5E6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/011_20uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/panF_#1_P3G3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (panF_#1_P3G3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_256.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152500608-1576927 Batch1_HCC1143_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100728244-1869123 07F06_rep_A_Methoxamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100728244-1869123 07F06_rep_A_Methoxamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152847730-1577117 Batch3_ACHN_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170127_044ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a3/f52098d6d412f91ad1812e6bce0e94/input_file/SH9_20170127_044ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113251990-1874465 11A04_rep_B_Pyrithyldioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113251990-1874465 11A04_rep_B_Pyrithyldioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_214.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122457895-1879949 15B06_rep_C_Amcinonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122457895-1879949 15B06_rep_C_Amcinonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample019_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152532951-1576954 Batch2_RERFLCSQ1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_B5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_18111330_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094151/raw/Bruker QTof micrOTOF QII d7-d28_mzML/Sugarcane3.mzML at line 689
Extra content at the end of the document, line 67600, column 7 (Sugarcane3.mzML, line 67600)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ubiG_#1_P5F10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (ubiG_#1_P5F10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097681/peak/amino acids/030521-b1-OV-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125059298-1862790 03A10_rep_C_Hydralazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125059298-1862790 03A10_rep_C_Hydralazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125646889-1863071 03B03_rep_D_Etofyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125646889-1863071 03B03_rep_D_Etofyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101631971-1869555 07B11_rep_C_Ethamivana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101631971-1869555 07B11_rep_C_Ethamivana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate30/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_04_157_prot_47_IMS_9Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control167_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control167_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/csdA_P3D6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (csdA_P3D6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_A6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH65.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_17091608_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152820598-1868319 06G09_rep_A_Neostigmine_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152820598-1868319 06G09_rep_A_Neostigmine_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113746148-1874663 11A09_rep_C_Furazolidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113746148-1874663 11A09_rep_C_Furazolidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR324h1a.mzML at line 689
expected '>', line 75169, column 23 (pBlateR324h1a.mzML, line 75169)
Error processing file: /data/datasets/server/MassIVE/MSV000090213/ccms_peak/18March2022_004_VH WD Trang 10x_pos  3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/blank_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/809.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152727086-1577049 Batch3_KP4_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/204.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_494_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112236281-1873598 10B10_rep_D_Levonordefrinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112236281-1873598 10B10_rep_D_Levonordefrinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case1_pos.mzXML at line 689
attributes construct error, line 37, column 67 (Case1_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_73_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_73_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124939148-1862726 03C09_rep_C_Pentolinium_bitartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124939148-1862726 03C09_rep_C_Pentolinium_bitartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD3_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C20_id.mzML at line 21
index 513 is out of bounds for axis 0 with size 513
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122620425-1880013 15E02_rep_D_Clofibrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122620425-1880013 15E02_rep_D_Clofibrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092960/raw/HILIC_plusDDA/HILIC/20221111-JC-471_HILIC_121_01.mzML at line 689
Invalid character: Char 0x0 out of allowed range
, line 22237, column 34381 (20221111-JC-471_HILIC_121_01.mzML, line 22237)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A10_id_MSn_negative.mzML at line 21
index 274 is out of bounds for axis 0 with size 274
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152047349-1576726 Batch1_UMUC3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD6_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.ros_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113122737-1874394 11C03_rep_B_Clidinium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113122737-1874394 11C03_rep_B_Clidinium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122918186-1867649 05D01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122918186-1867649 05D01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124402637-1876560 09A06_rep_A_Flurandrenolidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124402637-1876560 09A06_rep_A_Flurandrenolidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ppx_P4C5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (ppx_P4C5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190118_ES_H3K_batch14_repB_213.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112543443-1922029 4_G4_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112543443-1922029 4_G4_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091941198-1878607 13G08_rep_D_Tocainide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091941198-1878607 13G08_rep_D_Tocainide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person21_plasma_youth_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person21_plasma_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dgkA_P4E6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (dgkA_P4E6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122331359-1867370 04C02_rep_D_Ethisteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122331359-1867370 04C02_rep_D_Ethisteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170127_028ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/48/1dd31798d2ef600a545a18f6ce8c8b/input_file/SH10_20170127_028ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130844646-1877667 13F03_rep_C_Trapidila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130844646-1877667 13F03_rep_C_Trapidila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/003_Ammonia_Day14_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170127_055ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/76/9232991c95bbcdcf6aff34e35ca4dc/input_file/MMW3_20170127_055ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201833113-1878100 09A08_rep_D_Rebamipidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201833113-1878100 09A08_rep_D_Rebamipidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123831057-1876293 08F01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123831057-1876293 08F01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122003984-1879725 15B10_rep_B_Phentermine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122003984-1879725 15B10_rep_B_Phentermine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/dxyl5p_dxr_P4F5_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (dxyl5p_dxr_P4F5_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201220_LKM_20to1_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_60.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151557730-1924992 4_B1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151557730-1924992 4_B1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150316562-1864747 02E07_rep_B_Mefloquine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150316562-1864747 02E07_rep_B_Mefloquine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P11_id.mzML at line 21
index 548 is out of bounds for axis 0 with size 548
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113326647-1874493 11E03_rep_B_Trimeprazine_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113326647-1874493 11E03_rep_B_Trimeprazine_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007523_031618-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH18.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170125_020EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ec/5385019aabfc8769b42f0fe6cbe811/input_file/MMW5_20170125_020EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_161.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_161.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Cupriavidus_pauculus_MSL_348.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_123.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150218754-1864703 02E10_rep_B_Pirenzepine dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150218754-1864703 02E10_rep_B_Pirenzepine dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151647595-1576530 Batch7_NCIH441_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_160.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD2_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hD1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hD1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6D01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisG_#1_P5A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (hisG_#1_P5A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223514731-1870163 01D09_rep_B_Hexamethonium dibromide dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223514731-1870163 01D09_rep_B_Hexamethonium dibromide dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150240870-1924316 1_H11_RGT2_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150240870-1924316 1_H11_RGT2_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007555_031618-1CRP4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-105_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1K020.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM5A002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082793/ccms_peak/raw/MTBLS227/37382-B08-1.mzXML at line 88
Invalid base64-encoded string: number of data characters (316393) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I5_id_MSn_negative.mzML at line 21
index 354 is out of bounds for axis 0 with size 354
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150552072-1864867 02D07_rep_C_Naltrexone hydrochloride dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150552072-1864867 02D07_rep_C_Naltrexone hydrochloride dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151819809-1576606 Batch7_UACC257_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlB3a.mzXML at line 689
expected '>', line 718, column 11 (ExtraControlB3a.mzXML, line 718)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_C12_id_positive.mzML at line 21
index 324 is out of bounds for axis 0 with size 324
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151635375-1925024 4_F2_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151635375-1925024 4_F2_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153816942-1868787 06F07_rep_C_Meclocycline_sulfosalicylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153816942-1868787 06F07_rep_C_Meclocycline_sulfosalicylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.MG1_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_65_CNR_49.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_65_CNR_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201218_LKM_no_wash_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125553559-1877068 12H10_rep_D_Proparacaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125553559-1877068 12H10_rep_D_Proparacaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112216264-1873582 10B03_rep_D_Streptozotocinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112216264-1873582 10B03_rep_D_Streptozotocinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/preA_P3G6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (preA_P3G6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/011_20uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150418024706.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121304824-1866878 04A08_rep_B_Albendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121304824-1866878 04A08_rep_B_Albendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123013318-1867692 05H04_rep_B_Hemicholinium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123013318-1867692 05H04_rep_B_Hemicholinium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200741534-1881615 16D07_rep_A_Fenoldopama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200741534-1881615 16D07_rep_A_Fenoldopama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152431035-1576903 Batch2_NCIH2170_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223308023-1870066 01D02_rep_B_Chloramphenicolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223308023-1870066 01D02_rep_B_Chloramphenicolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114305675-1922901 4_G8_STE2_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114305675-1922901 4_G8_STE2_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_B12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093042679-1879119 14H11_rep_C_Nadifloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093042679-1879119 14H11_rep_C_Nadifloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113846926-1874712 11F11_rep_D_Methylhydantoin-5-(L)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113846926-1874712 11F11_rep_D_Methylhydantoin-5-(L)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_E8_id_positive.mzML at line 21
index 380 is out of bounds for axis 0 with size 380
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cydC_#3_P6C5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (cydC_#3_P6C5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123416269-1876090 08C04_rep_B_Papaverine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123416269-1876090 08C04_rep_B_Papaverine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153657217-1577514 Batch5_HCT15_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112420724-1921957 3_D10_GPR1_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112420724-1921957 3_D10_GPR1_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112415731-1874063 10F09_rep_D_Proadifen_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112415731-1874063 10F09_rep_D_Proadifen_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C8_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_112b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113642359-1922562 2_A11_IZH2_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113642359-1922562 2_A11_IZH2_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202204814-1882266 16G10_rep_D_Oxymetholoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202204814-1882266 16G10_rep_D_Oxymetholoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165806364-2227515 PAT45.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151705285-1925049 4_A4_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151705285-1925049 4_A4_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/A1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1K008.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/185-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample024_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_E6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075115.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gatA_P4D2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (gatA_P4D2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_G8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person2_Blood_POS.mzXML at line 689
attributes construct error, line 38, column 73 (Person2_Blood_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EBM010B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L8 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112112986-1921793 2_D3_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112112986-1921793 2_D3_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0008_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-035_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111846179-1921668 2_E1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111846179-1921668 2_E1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111523646-1921493 1_F11_GAP1_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111523646-1921493 1_F11_GAP1_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_F3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A11_id.mzML at line 21
index 541 is out of bounds for axis 0 with size 541
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009523_IBD200_E11_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121620124-1879555 15D04_rep_A_Mitotaneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121620124-1879555 15D04_rep_A_Mitotaneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009502_IBD200_E9_B12.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1845.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1845.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_1_B_rep_1_B-D2_1_5850.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample127_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0031_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_93.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_A11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_G4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fumA_#2_P4A2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (fumA_#2_P4A2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD4_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/003_Soil_500mMExtra_3_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rutA_P3F7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (rutA_P3F7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122655578-1867535 05G08_rep_A_Carbetapentane_citrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122655578-1867535 05G08_rep_A_Carbetapentane_citrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092230977-1878739 14H02_rep_A_Mecamylamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092230977-1878739 14H02_rep_A_Mecamylamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153414557-1577380 Batch5_NCIH1650_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD5_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_C3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pta_P3C2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (pta_P3C2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nadA_P4E2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (nadA_P4E2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_E2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151817359-1576604 Batch4_HS578T_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130357462-1877439 13B03_rep_B_THIP_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130357462-1877439 13B03_rep_B_THIP_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control151_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control151_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/001_Nitrate_Day4_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151814938-1576602 Batch3_PANC1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130106739-1863287 04C07_rep_A_Disopyramideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130106739-1863287 04C07_rep_A_Disopyramideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092723990-1878967 14B07_rep_B_Trifluridineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092723990-1878967 14B07_rep_B_Trifluridineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/411.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114926812-1875222 12D09_rep_B_Nimodipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114926812-1875222 12D09_rep_B_Nimodipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_F4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/2.2_VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150348577-1924372 1_D7_RGT2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150348577-1924372 1_D7_RGT2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201621858-1882000 16B03_rep_C_Ezetimibeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201621858-1882000 16B03_rep_C_Ezetimibeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202013067-1878177 09C05_rep_D_Loratadineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202013067-1878177 09C05_rep_D_Loratadineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152342882-1576865 Batch1_HCC70_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085507/ccms_peak/raw/F20200310sunr_COVID_b1_32.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (F20200310sunr_COVID_b1_32.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C10_id_MSn_negative.mzML at line 21
index 326 is out of bounds for axis 0 with size 326
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224341423-1870555 01E06_rep_D_Naproxena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224341423-1870555 01E06_rep_D_Naproxena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR231_5h3a.mzML at line 689
Specification mandates value for attribute cvRDlhyLQ7aKi0M, line 175035, column 35 (pBlateR231_5h3a.mzML, line 175035)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124518756-1862402 03A08_rep_A_Riluzole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124518756-1862402 03A08_rep_A_Riluzole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_H6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/27_D25062013T0033_1399CBU_0001_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Blank_pesticide_170404035601.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-012_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/428.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/002_Urea_Day14_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130447004-1877478 13F04_rep_B_Deptropine_citrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130447004-1877478 13F04_rep_B_Deptropine_citrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1084.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Blank_2_B-A1_1_5627.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1315.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1315.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009751_IBD200_E22_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/953-B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_22.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_22.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD4_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114103545-1874822 11H01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114103545-1874822 11H01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/872.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112723779-1922117 4_C2_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112723779-1922117 4_C2_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V7_LH.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemE_P3B3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (hemE_P3B3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121054015-1879311 14H11_rep_D_Nadifloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121054015-1879311 14H11_rep_D_Nadifloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101853802-1869671 07B02_rep_D_Metixene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101853802-1869671 07B02_rep_D_Metixene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_A2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152243643-1576818 Batch1_LK2_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET122.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET122.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122918629-1875852 08E08_rep_A_Eburnamonine_(-)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122918629-1875852 08E08_rep_A_Eburnamonine_(-)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172644461-1889903 Nb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122937805-1875867 08C07_rep_A_Alfacalcidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122937805-1875867 08C07_rep_A_Alfacalcidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_55.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrdG_P3B6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (nrdG_P3B6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_73.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121715696-1879598 15G02_rep_A_Gatifloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121715696-1879598 15G02_rep_A_Gatifloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092703235-1878951 14B04_rep_B_Pivmecillinam_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092703235-1878951 14B04_rep_B_Pivmecillinam_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_E7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210115_AD_78.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153843187-1577603 Batch6_NCIH526_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_G3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI1b_4_26_1_895.mzML at line 689
Premature end of data in tag binary line 4776682, line 4776682, column 323902 (50130_microPOTS_Rat_Brain_ROI1b_4_26_1_895.mzML, line 4776682)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153128723-1577246 Batch4_MDAMB435S_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122914471-1867646 05B11_rep_B_Domperidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122914471-1867646 05B11_rep_B_Domperidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/900.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207133002414-1733933 1pool Skin 3 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpd_P3B1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (lpd_P3B1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yahA_P3B1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (yahA_P3B1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_22_Liver_EtOH_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_22_Liver_EtOH_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Serratia_liquefaciens_P27_02.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_B8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165813183-2227521 PAT46.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_060ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/3a/e5d4b78ee6d7274a88d3a5b57adb92/input_file/QC_20170127_060ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081759.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_42_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_42_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202005601-1882173 16H08_rep_D_Triclabendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202005601-1882173 16H08_rep_D_Triclabendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/113.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087069/raw/BRB Liquid Convert pos/BBR_R17500_N70_I10e4_E10_pos_06292020.mzML at line 689
Premature end of data in tag binary line 220181, line 220181, column 238421 (BBR_R17500_N70_I10e4_E10_pos_06292020.mzML, line 220181)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112347190-1874040 10G07_rep_D_Methimazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112347190-1874040 10G07_rep_D_Methimazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C18_id.mzML at line 21
index 534 is out of bounds for axis 0 with size 534
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170209_041ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ca/15990970bb50b98de962024d89104f/input_file/MMW5_20170209_041ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_04_273_prot_24_IMS_12Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153656936-1868723 06B07_rep_C_Bacampicillin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153656936-1868723 06B07_rep_C_Bacampicillin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET77.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET77.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample095_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170209_044ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/82/9c038f10ba5778050b59c3ac3b4e23/input_file/MMW3_20170209_044ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093144629-1879168 14D06_rep_C_(R)-Propranolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093144629-1879168 14D06_rep_C_(R)-Propranolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201401167-1881897 16E08_rep_B_Pregabalina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201401167-1881897 16E08_rep_B_Pregabalina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yeeO_P3D12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (yeeO_P3D12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8E12_160605082430.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N19_id_MSn_positive.mzML at line 21
index 670 is out of bounds for axis 0 with size 670
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_E10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_E10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_49.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124335791-1862321 03G03_rep_A_Antimycin_Aa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124335791-1862321 03G03_rep_A_Antimycin_Aa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151848443-1576630 Batch7_M14_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151308779-1576348 Batch7_SNB75_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MIXEE_20170125_071EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/cd/675ec8a1cdbe6d3028dbd549033408/input_file/MIXEE_20170125_071EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N20.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150524774-1864846 02D05_rep_C_Ampicillin trihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150524774-1864846 02D05_rep_C_Ampicillin trihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152628571-1577000 Batch2_NCIH647_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S128.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S128.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample205_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083772/peak/181217StromDOM_mzXMLfiles/12_S2-DOM-1-Fri-low_A.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151735502-1576570 Batch4_DU145_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007698_032218-5CRP4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201436875-1881924 16D02_rep_C_Aminacrineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201436875-1881924 16D02_rep_C_Aminacrineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/164_128.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc053_pos.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc053_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_E4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150953883-1924685 2_E8_RGT2_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150953883-1924685 2_E8_RGT2_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153619572-1868692 06D07_rep_C_Digitoxigenina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153619572-1868692 06D07_rep_C_Digitoxigenina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M11_id_MSn_positive.mzML at line 21
index 699 is out of bounds for axis 0 with size 699
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200821181-1881644 16D09_rep_A_Diatrizoic_acid_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200821181-1881644 16D09_rep_A_Diatrizoic_acid_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/1-methyl-2-hydroadenosine.mzXML at line 689
Premature end of data in tag peaks line 7687, line 7691, column 3561 (1-methyl-2-hydroadenosine.mzXML, line 7691)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC04_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/491.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case87_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case87_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111640961-1921560 1_A7_GAP1_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111640961-1921560 1_A7_GAP1_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150612757-1864883 02E02_rep_C_Bromocryptine mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150612757-1864883 02E02_rep_C_Bromocryptine mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GA11_01_16913.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151923267-1867902 05G09_rep_C_Dequalinium_dichloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151923267-1867902 05G09_rep_C_Dequalinium_dichloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201215_LKM_NoBeads_nBut_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/48-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GG8_01_11553.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person03_plasma_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 91 (Person03_plasma_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152316688-1576844 Batch1_NCIH1703_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092448690-1878846 14H01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092448690-1878846 14H01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d1_293_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 25144, column 1 (SysVirol_IFT001_1918_d1_293_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 25144)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1K012.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case255_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case255_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7G12_160604151935.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8H05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000088017/ccms_peak/12303-WT5-15_Treffon-007.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/3'-AMP.mzXML at line 689
Premature end of data in tag peaks line 8007, line 8011, column 56812 (3'-AMP.mzXML, line 8011)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121137815-1879344 14B04_rep_D_Pivmecillinam_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121137815-1879344 14B04_rep_D_Pivmecillinam_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K10_id_MSn_negative.mzML at line 21
index 302 is out of bounds for axis 0 with size 302
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2C09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M4_id_negative.mzML at line 21
index 245 is out of bounds for axis 0 with size 245
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_C5_id_negative.mzML at line 21
index 221 is out of bounds for axis 0 with size 221
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124231077-1876485 08A09_rep_D_Acarboseb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124231077-1876485 08A09_rep_D_Acarboseb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_17121408_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201644710-1882017 16G02_rep_C_Epirubicin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201644710-1882017 16G02_rep_C_Epirubicin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_E10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151520885-1576457 Batch7_CORL23_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1081.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151112579-1924753 3_H2_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151112579-1924753 3_H2_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/038_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_C5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112946735-1922207 1_H8_IZH2_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112946735-1922207 1_H8_IZH2_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_F3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152640566-1577010 Batch2_NCIH838_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121933792-1879702 15B04_rep_B_Bromhexine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121933792-1879702 15B04_rep_B_Bromhexine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121558621-1867010 04F11_rep_B_Diperodon_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121558621-1867010 04F11_rep_B_Diperodon_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G07P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121331579-1866898 04B01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121331579-1866898 04B01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_19032112_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100211138-1868870 06B04_rep_D_Carbarsoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100211138-1868870 06B04_rep_D_Carbarsoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/475-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130710079-1877591 13C11_rep_C_Phenylbutazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130710079-1877591 13C11_rep_C_Phenylbutazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Heart_raw files/Lumos_ISAS_heart_unlabeled_3.mzML at line 689
Premature end of data in tag binary line 888402, line 888402, column 578 (Lumos_ISAS_heart_unlabeled_3.mzML, line 888402)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151625287-1576511 Batch7_UACC62_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dsbD_P3A2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (dsbD_P3A2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B20_id_MSn_negative.mzML at line 21
index 296 is out of bounds for axis 0 with size 296
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150141831-1864675 02C07_rep_B_Nicorandilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150141831-1864675 02C07_rep_B_Nicorandilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_A4_id_negative.mzML at line 21
index 224 is out of bounds for axis 0 with size 224
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/99.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101919917-1869692 07D02_rep_D_Fluoxetine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101919917-1869692 07D02_rep_D_Fluoxetine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151332676-1576368 Batch6_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/860.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223959522-1870382 01D09_rep_D_Hexamethonium dibromide dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223959522-1870382 01D09_rep_D_Hexamethonium dibromide dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_med (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sucD_P3F2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (sucD_P3F2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_17121408_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Pseudoalteromonas_rubra_S2471_02.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V8_EDTAk3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/TAA486_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113352905-1922416 2_A7_IZH2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113352905-1922416 2_A7_IZH2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_C9_id_negative.mzML at line 21
index 178 is out of bounds for axis 0 with size 178
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L18_id_MSn_positive.mzML at line 21
index 348 is out of bounds for axis 0 with size 348
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153108920-1577230 Batch3_NCIH661_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090213/raw/17March2022_026_VH RT Trang 10x_pos  2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12C13_Replicate2_Level1_MSMS_pos.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_133_2C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_P_E4E4_AD_02Feb18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151506611-1924954 4_G7_SNF3_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151506611-1924954 4_G7_SNF3_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114202683-1874870 11G02_rep_D_Gabapentina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114202683-1874870 11G02_rep_D_Gabapentina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_8_Liver_Ma_control_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_8_Liver_Ma_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBsubR37_5h2b.mzML at line 689
Opening and ending tag mismatch: binary line 17476 and scanWindow, line 17478, column 30 (pBsubR37_5h2b.mzML, line 17478)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/470-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151932751-1576667 Batch1_HCC1143_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4H03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201944942-1878155 09A05_rep_D_N-Acetyl-DL-homocysteine_Thiolactoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201944942-1878155 09A05_rep_D_N-Acetyl-DL-homocysteine_Thiolactoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD5_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1081.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145952647-1864110 02F02_rep_B_Glipizideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145952647-1864110 02F02_rep_B_Glipizideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GE11_01_12142.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152731274-1868281 06H02_rep_A_Vatalanibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152731274-1868281 06H02_rep_A_Vatalanibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112506942-1874104 10E06_rep_D_Ethoxyquina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112506942-1874104 10E06_rep_D_Ethoxyquina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150418033346.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152634617-1577005 Batch2_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample11n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine66cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine66cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F20_id_MSn_negative.mzML at line 21
index 322 is out of bounds for axis 0 with size 322
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_246.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_G4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_86.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080965/peak/blanc_1.mzML at line 689
Specification mandates value for attribute unitst, line 75859, column 123 (blanc_1.mzML, line 75859)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/928.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200613589-1881550 16E04_rep_A_Clopidogrelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200613589-1881550 16E04_rep_A_Clopidogrelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/001_Nitrate_Day9_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fadA_P4D11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (fadA_P4D11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113946691-1874760 11H08_rep_D_Scopolamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113946691-1874760 11H08_rep_D_Scopolamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_59.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bisC_P3D4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (bisC_P3D4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD3_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122700751-1867539 05B06_rep_A_Zaprinastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122700751-1867539 05B06_rep_A_Zaprinastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/amiD_P4E7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (amiD_P4E7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_0124_190125072046.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_C9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152147218-1868018 05A09_rep_C_Zoxazolaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152147218-1868018 05A09_rep_C_Zoxazolaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151243651-1576327 Batch5_NCIH446_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190325342-1889790 stda.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122333835-1867372 04A10_rep_D_Bupropion_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122333835-1867372 04A10_rep_D_Bupropion_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151956692-1576686 Batch1_NCIH2073_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1451.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1451.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123539123-1876157 08A06_rep_C_Atropine_sulfate_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123539123-1876157 08A06_rep_C_Atropine_sulfate_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113401978-1922424 2_E5_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113401978-1922424 2_E5_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_0123_190124014359.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202203706-1878264 10B08_rep_A_Trimetozinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202203706-1878264 10B08_rep_A_Trimetozinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_B8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MIXEE_20170127_070ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/1f/91f5c081d4ef8269afa3da79676366/input_file/MIXEE_20170127_070ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A3_id_MSn_negative.mzML at line 21
index 181 is out of bounds for axis 0 with size 181
Error processing file: /data/datasets/server/MassIVE/MSV000085847/raw/andrem1/74_StdMix_11_Neg.mzML at line 689
Specification mandates value for attribute accesetector, line 2215, column 44 (74_StdMix_11_Neg.mzML, line 2215)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_RBC1_POS.mzXML at line 689
attributes construct error, line 38, column 72 (Person4_RBC1_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150358689-1864779 02E01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150358689-1864779 02E01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124208824-1876467 08G10_rep_D_Aniracetamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124208824-1876467 08G10_rep_D_Aniracetamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_28_NOR_52.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_28_NOR_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007620_032118-Unst4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124448959-1876598 09F09_rep_A_Tetrahydrozoline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124448959-1876598 09F09_rep_A_Tetrahydrozoline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112818520-1874256 11B04_rep_A_Bucladesine_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112818520-1874256 11B04_rep_A_Bucladesine_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125204041-1876893 12G10_rep_C_(+,-)-Octopamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125204041-1876893 12G10_rep_C_(+,-)-Octopamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145534451-1863902 02F04_rep_A_Hydroxyzine dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145534451-1863902 02F04_rep_A_Hydroxyzine dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145639461-1863954 02H06_rep_A_Paclitaxelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145639461-1863954 02H06_rep_A_Paclitaxelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dxr_P4F5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (dxr_P4F5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152838321-1577109 Batch3_SKLU1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG18.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpBud3_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_sample05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD1_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F8_id_MSn_positive.mzML at line 21
index 565 is out of bounds for axis 0 with size 565
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152102661-1576738 Batch1_HCC38_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123229897-1867798 05F02_rep_B_Ketotifen_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123229897-1867798 05F02_rep_B_Ketotifen_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201115556-1877778 09B08_rep_B_Benzamil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201115556-1877778 09B08_rep_B_Benzamil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H19_id_MSn_negative.mzML at line 21
index 346 is out of bounds for axis 0 with size 346
Error processing file: /data/datasets/server/MassIVE/MSV000078960/ccms_peak/blank-Pmix_SPL-GT47-12+11_RA1_01_19804.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_104.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_104.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample088_ne.mzml at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000086351/peak/Sample088_ne.mzml
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_111.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_129.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GH10_01_17121.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101004938-1869247 07C02_rep_B_Vigabatrin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101004938-1869247 07C02_rep_B_Vigabatrin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alsA_P4D2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (alsA_P4D2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIAJ13.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/coaE_P4G4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (coaE_P4G4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111758990-1872033 10B05_rep_C_Flumethasoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111758990-1872033 10B05_rep_C_Flumethasoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_14_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_14_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30096 - GI-16-433.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GB11_01_11475.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_115_2A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123014745-1867693 05H04_rep_B_Hemicholinium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123014745-1867693 05H04_rep_B_Hemicholinium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153942436-1577653 Batch7_NCIH441_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_SERUM_V6_CAT.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224256366-1870519 01F08_rep_D_Benoxinate hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224256366-1870519 01F08_rep_D_Benoxinate hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike4_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114628270-1875080 12B10_rep_A_Adrenosteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114628270-1875080 12B10_rep_A_Adrenosteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/QC_5_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_9_P3A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (ctrl_9_P3A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lplA_#1_P5A5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (lplA_#1_P5A5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111711271-1871610 10G02_rep_B_Clobetasol_propionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111711271-1871610 10G02_rep_B_Clobetasol_propionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202536504-1878432 10H09_rep_A_Dienestrola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202536504-1878432 10H09_rep_A_Dienestrola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202134927-1878241 09A06_rep_D_Flurandrenolideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202134927-1878241 09A06_rep_D_Flurandrenolideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153317044-1868547 06D05_rep_B_Cefadroxilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153317044-1868547 06D05_rep_B_Cefadroxilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2C2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2C2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_56.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murD_P5D7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (murD_P5D7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V7_EDTAk2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223916027-1870349 01A07_rep_C_Isoflupredone acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223916027-1870349 01A07_rep_C_Isoflupredone acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hC2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hC2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123122521-1875950 08H08_rep_A_Levetiracetama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123122521-1875950 08H08_rep_A_Levetiracetama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_119.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_119.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trpA_P3H11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (trpA_P3H11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123910746-1876325 08E11_rep_C_Hydroxychloroquine_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123910746-1876325 08E11_rep_C_Hydroxychloroquine_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P20_id_MSn_positive.mzML at line 21
index 668 is out of bounds for axis 0 with size 668
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201711264-1882037 16C07_rep_C_Avobenzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201711264-1882037 16C07_rep_C_Avobenzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125127136-1862812 03A05_rep_C_Ornidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125127136-1862812 03A05_rep_C_Ornidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150620505-1924501 2_A11_RGT2_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150620505-1924501 2_A11_RGT2_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc7 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G18_id_MSn_positive.mzML at line 21
index 401 is out of bounds for axis 0 with size 401
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113547496-1922515 2_D4_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113547496-1922515 2_D4_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ANT1_30EV_RA3_01_22647.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_61.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_61.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2D05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG007C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201141629-1877797 09A05_rep_B_N-Acetyl-DL-homocysteine_Thiolactoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201141629-1877797 09A05_rep_B_N-Acetyl-DL-homocysteine_Thiolactoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_P4_id_MSn_positive.mzML at line 21
index 398 is out of bounds for axis 0 with size 398
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case195_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case195_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007508_031618-0.01Thr2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007632_032118-0.01Thr2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case190_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case190_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_11_dorsal_skin_RESV_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_11_dorsal_skin_RESV_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/285.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152940697-1577162 Batch3_NCIH322M_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151916110-1576653 Batch5_COLO205_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_G4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152011687-1867941 05G07_rep_C_GBR_12909_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152011687-1867941 05G07_rep_C_GBR_12909_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125016237-1862756 03B11_rep_C_Flutamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125016237-1862756 03B11_rep_C_Flutamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/755.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNT302_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNQ525_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153157425-1577269 Batch4_DMS114_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210115_AD_54.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNS654_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170207_028EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/34/8686cbe4934d051b481a196101ec19/input_file/MMW3_20170207_028EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150418120705.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_18_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_A4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145624601-1863942 02H01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145624601-1863942 02H01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2J004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_69.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_C10_id_positive.mzML at line 21
index 334 is out of bounds for axis 0 with size 334
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120854887-1879221 14B05_rep_D_Levopropoxyphene_napsylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120854887-1879221 14B05_rep_D_Levopropoxyphene_napsylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092242185-1878748 14F05_rep_A_Sulfadoxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092242185-1878748 14F05_rep_A_Sulfadoxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-039.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-039.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR37_5h1a.mzML at line 689
Opening and ending tag mismatch: binary line 22960 and activation, line 22961, column 28 (pMIBSDR37_5h1a.mzML, line 22961)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD6_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1787.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1787.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5G04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112953973-1922213 1_D10_IZH2_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112953973-1922213 1_D10_IZH2_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_098a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153837288-1577598 Batch7_NCIH441_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125107056-1876851 12H09_rep_C_Urosiola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125107056-1876851 12H09_rep_C_Urosiola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD3_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113020714-1922234 1_E10_IZH2_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113020714-1922234 1_E10_IZH2_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112958578-1922217 1_A4_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112958578-1922217 1_A4_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202008053-1882175 16B04_rep_D_Rizatriptan_benzoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202008053-1882175 16B04_rep_D_Rizatriptan_benzoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_8_2022_1003_Michael_leming_liver_neg-0.0026.mzML at line 689
Premature end of data in tag binary line 26576, line 26576, column 3303021 (1_8_2022_1003_Michael_leming_liver_neg-0.0026.mzML, line 26576)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101727884-1869601 07C01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101727884-1869601 07C01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_83.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_E3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yfdE_P4C9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (yfdE_P4C9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bglA_P3C4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (bglA_P3C4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/entD_P3D8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (entD_P3D8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123445717-1876114 08C01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123445717-1876114 08C01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150007983-1864122 02A07_rep_B_Acyclovirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150007983-1864122 02A07_rep_B_Acyclovirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case156_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case156_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bglB_P3F3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (bglB_P3F3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/955.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121538761-1879523 15E08_rep_A_Desloratadineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121538761-1879523 15E08_rep_A_Desloratadineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/040_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122228925-1867319 04G03_rep_D_Lincomycin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122228925-1867319 04G03_rep_D_Lincomycin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202051720-1882209 16H05_rep_D_Ceftibutena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202051720-1882209 16H05_rep_D_Ceftibutena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/638.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122049169-1867239 04D04_rep_C_Cortisoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122049169-1867239 04D04_rep_C_Cortisoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_9_B-A2_1_5664.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_55_RIN_25.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_55_RIN_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G07P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNQ766_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151430264-1576416 Batch7_HOP62_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151955449-1576685 Batch1A_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/002_Soil_10mMExtra_2_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114222608-1874886 11F01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114222608-1874886 11F01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GD1_01_16944.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_42_NOR_51.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_42_NOR_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_104.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222840188-1869865 01E10_rep_A_Amyleine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222840188-1869865 01E10_rep_A_Amyleine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O19_id_MSn_positive.mzML at line 21
index 571 is out of bounds for axis 0 with size 571
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H22_id_MSn_positive.mzML at line 21
index 429 is out of bounds for axis 0 with size 429
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlC2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraControlC2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130021915-1863250 04A10_rep_A_Bupropion_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130021915-1863250 04A10_rep_A_Bupropion_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_Batch03_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124644852-1876686 09A11_rep_A_Pinaverium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124644852-1876686 09A11_rep_A_Pinaverium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122455276-1879947 15E06_rep_C_Fluocinolone_acetonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122455276-1879947 15E06_rep_C_Fluocinolone_acetonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114026159-1922759 3_G4_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114026159-1922759 3_G4_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111452430-1921081 1_F7_GAP1_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111452430-1921081 1_F7_GAP1_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092546698-1878892 14A11_rep_B_Quinethazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092546698-1878892 14A11_rep_B_Quinethazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_H3_01_12182.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_G5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/015_CRa_H9M5_M470_H14_K2_high_pos.mzXML at line 689
Premature end of data in tag peaks line 21148, line 21152, column 48628 (015_CRa_H9M5_M470_H14_K2_high_pos.mzXML, line 21152)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/blank_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/orot_pyrE_P6G4_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 634, column 10010094 (orot_pyrE_P6G4_Aquity_neg.mzXML, line 634)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfI_P3H5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (hyfI_P3H5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112333401-1873644 10C11_rep_D_Mevalonic-D,_L_acid_lactoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112333401-1873644 10C11_rep_D_Mevalonic-D,_L_acid_lactoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_090b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ulaF_P4E5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ulaF_P4E5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124619966-1862567 03F07_rep_B_Tiapride_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124619966-1862567 03F07_rep_B_Tiapride_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Methylobacterium_LYG010C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case25_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case25_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125851450-1863175 04D03_rep_A_Indomethacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125851450-1863175 04D03_rep_A_Indomethacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111947304-1872599 10F06_rep_C_Sulfamethazine_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111947304-1872599 10F06_rep_C_Sulfamethazine_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_07_blood_control_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_07_blood_control_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145750956-1864012 02A05_rep_A_Moroxidine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145750956-1864012 02A05_rep_A_Moroxidine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201817503-1882088 16B04_rep_C_Rizatriptan_benzoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201817503-1882088 16B04_rep_C_Rizatriptan_benzoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purK_P3D5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (purK_P3D5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_redo_MSMS_2022_neg-0004.mzML at line 689
Premature end of data in tag binary line 15121, line 15121, column 441415 (pooled_redo_MSMS_2022_neg-0004.mzML, line 15121)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1A05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J19_id_MSn_positive_20240503090944.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123302031-1867824 05D06_rep_B_Hycanthonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123302031-1867824 05D06_rep_B_Hycanthonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124928906-1876778 12C05_rep_C_Metyraponea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124928906-1876778 12C05_rep_C_Metyraponea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ6_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A21_id_MSn_negative.mzML at line 21
index 251 is out of bounds for axis 0 with size 251
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113407848-1922429 2_C9_IZH2_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113407848-1922429 2_C9_IZH2_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GF9_01_11537.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28022021_Batch02_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114228552-1874891 11G05_rep_D_Methylhydantoin-5-(D)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114228552-1874891 11G05_rep_D_Methylhydantoin-5-(D)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111620835-1871571 10C09_rep_B_Monensin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111620835-1871571 10C09_rep_B_Monensin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_D2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kduI_P4E8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (kduI_P4E8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample7n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/blank_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S36.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S36.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202354890-1878352 10B06_rep_A_Flecainide_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202354890-1878352 10B06_rep_A_Flecainide_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170125_028EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/27/6edee437c4008a5d67d412ec7df576/input_file/SH10_20170125_028EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/CVP_B_rep_1_B-E3_1_5546.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190109_ES_H3K_batch12_repB_179.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101831350-1869653 07E03_rep_D_Thiostreptona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101831350-1869653 07E03_rep_D_Thiostreptona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N1.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007633_032118-0.01Thr2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD5_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD1_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_E12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1T2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1T2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123414977-1876089 08G09_rep_B_Benazepril_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123414977-1876089 08G09_rep_B_Benazepril_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2J005.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224356365-1870567 01F02_rep_D_Mupirocina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224356365-1870567 01F02_rep_D_Mupirocina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/183_143.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113059457-1874376 11A10_rep_B_Dichlorphenamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113059457-1874376 11A10_rep_B_Dichlorphenamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152023366-1576707 Batch1_BT549_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200923600-1881690 16D01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200923600-1881690 16D01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-028_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V1_LH_PSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GF3_01_11529.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113126604-1874397 11B04_rep_B_Bucladesine_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113126604-1874397 11B04_rep_B_Bucladesine_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224231980-1870500 01A02_rep_D_Azaguanine-8b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224231980-1870500 01A02_rep_D_Azaguanine-8b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_E5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample109.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-3-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153529639-1868652 06A10_rep_C_Amiodarone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153529639-1868652 06A10_rep_C_Amiodarone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201812340-1882084 16D01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201812340-1882084 16D01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD4_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165712015-2227465 PAT35.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_120208_PA14_polar.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_A7_id_positive.mzML at line 21
index 327 is out of bounds for axis 0 with size 327
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sdaB_P3H3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (sdaB_P3H3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152433497-1576905 Batch2_NCIH2085_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine70cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine70cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHL04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5H01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007631_032118-0.01Thr1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30122 - GI-16-024.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210115_AD_17.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR131_5h1a.mzML at line 689
Opening and ending tag mismatch: binary line 92788 and scan, line 92796, column 20 (pBpumR131_5h1a.mzML, line 92796)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_UC_149_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102111057-1869783 07A01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102111057-1869783 07A01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-faux (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152232442-1576809 Batch2_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/blank_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNS615_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case98_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case98_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151205982-1576296 Batch5_NCIH345_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC02_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190131111731.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080607.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1709.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1709.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113456595-1874528 11E08_rep_C_(-)_-Levobunolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113456595-1874528 11E08_rep_C_(-)_-Levobunolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O23_id_negative.mzML at line 21
index 252 is out of bounds for axis 0 with size 252
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/016_1000uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/other/Sequence/20191010_MSMSChooser_GNPS00004_GNPS00005.sld at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115002760-1875251 12A04_rep_B_Digoxigeninb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115002760-1875251 12A04_rep_B_Digoxigeninb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113333038-1922398 2_A9_IZH2_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113333038-1922398 2_A9_IZH2_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/13_D24062013T1748_1399CBU_0010_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113237928-1922350 1_F3_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113237928-1922350 1_F3_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_57.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112410654-1874059 10D09_rep_D_Ribostamycin_sulfate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112410654-1874059 10D09_rep_D_Ribostamycin_sulfate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130215206-1877360 13C05_rep_B_Oxfendazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130215206-1877360 13C05_rep_B_Oxfendazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix8_160528164905.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223740205-2227618 PAT38.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_E4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152434750-1576906 Batch2_VMCUB1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086335/raw/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Diaporthe CarGL-8A/M8A2E_a.mzML at line 689
Extra content at the end of the document, line 65147, column 2 (M8A2E_a.mzML, line 65147)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095147/peak/negative mzml/Blank QC/Blank29.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000095147/peak/negative mzml/Blank QC/Blank29.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130055989-1863278 04F05_rep_A_Pimethixene_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130055989-1863278 04F05_rep_A_Pimethixene_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112530842-1922018 4_G2_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112530842-1922018 4_G2_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfA_#2_P4A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (hyfA_#2_P4A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150355691-1924378 1_E8_RGT2_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150355691-1924378 1_E8_RGT2_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151807897-1576596 Batch7_UMC11_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124639834-1862583 03F01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124639834-1862583 03F01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_C2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_sample02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR17_5h3b.mzML at line 88
Invalid base64-encoded string: number of data characters (5721) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111943567-1872596 10A09_rep_C_Sulfadimethoxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111943567-1872596 10A09_rep_C_Sulfadimethoxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201417257-1881909 16F08_rep_C_Lofepraminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201417257-1881909 16F08_rep_C_Lofepraminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/594.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2E02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_F3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100407718-1868962 06E04_rep_D_Gabazine_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100407718-1868962 06E04_rep_D_Gabazine_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091730430-1878503 13H04_rep_D_Nomegestrol_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091730430-1878503 13H04_rep_D_Nomegestrol_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S005_dilute_190201022126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122132251-1867274 04F11_rep_D_Diperodon_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122132251-1867274 04F11_rep_D_Diperodon_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151824444-1867855 05E07_rep_C_Ambroxol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151824444-1867855 05E07_rep_C_Ambroxol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152550407-1868203 05F02_rep_D_Ketotifen_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152550407-1868203 05F02_rep_D_Ketotifen_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ7_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_4_P4A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (ctrl_4_P4A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/71-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125500228-1862985 03D07_rep_D_Pentoxifyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125500228-1862985 03D07_rep_D_Pentoxifyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115030832-1875274 12A07_rep_B_Clioquinola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115030832-1875274 12A07_rep_B_Clioquinola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180914_ES_H3K_batch2_repC_23.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hC3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hC3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102124394-1869794 07F07_rep_D_(S)-(-)-Atenololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102124394-1869794 07F07_rep_D_(S)-(-)-Atenololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124421172-1862357 03E11_rep_A_Fenbendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124421172-1862357 03E11_rep_A_Fenbendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_19032111_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151620669-1576507 Batch7_MIAPACA2_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_MSMS_2022_1003_Michael_leming_liver_neg-0009.mzML at line 689
Premature end of data in tag binary line 8893, line 8893, column 296218 (pooled_MSMS_2022_1003_Michael_leming_liver_neg-0009.mzML, line 8893)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/70-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153538528-1868659 06D06_rep_C_Cyclosporin_Ab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153538528-1868659 06D06_rep_C_Cyclosporin_Ab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_A6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_0124_190125093347.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ1_5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151555496-1576486 Batch7_MIAPACA2_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B07P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101103277-1869294 07F07_rep_B_(S)-(-)-Atenololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101103277-1869294 07F07_rep_B_(S)-(-)-Atenololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125928134-1863206 04H04_rep_A_Trifluoperazine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125928134-1863206 04H04_rep_A_Trifluoperazine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100959936-1869243 07D08_rep_B_Nystatinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100959936-1869243 07D08_rep_B_Nystatinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cusA_P3B11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (cusA_P3B11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223318032-1870074 01F01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223318032-1870074 01F01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/019_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/324.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150245934-1864724 02H04_rep_B_Didanosinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150245934-1864724 02H04_rep_B_Didanosinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150924129-1924659 2_F11_RGT2_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150924129-1924659 2_F11_RGT2_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_plasma_4h_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer3_plasma_4h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_E7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124221223-1876477 08B01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124221223-1876477 08B01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG16.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095819/raw/20240116_03_PA20_1ppm_1uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S131.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S131.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150417150706.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_162.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152438441-1576909 Batch2_NCIH2291_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152937102-1577159 Batch3_T24_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_C6_id_positive.mzML at line 21
index 331 is out of bounds for axis 0 with size 331
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112952787-1922212 1_D10_IZH2_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112952787-1922212 1_D10_IZH2_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124117717-1876426 08G06_rep_D_Cytarabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124117717-1876426 08G06_rep_D_Cytarabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150055422-1864158 02D05_rep_B_Ampicillin trihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150055422-1864158 02D05_rep_B_Ampicillin trihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/991.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-032.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-032.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201816282-1882087 16B04_rep_C_Rizatriptan_benzoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201816282-1882087 16B04_rep_C_Rizatriptan_benzoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112902888-1874291 11A02_rep_A_Carbinoxamine_maleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112902888-1874291 11A02_rep_A_Carbinoxamine_maleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-151_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152129373-1868004 05B06_rep_C_Zaprinasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152129373-1868004 05B06_rep_C_Zaprinasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2B04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/612.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095118/raw/LBD75-70%-MICELIO_POS_1-19_01_688.mzML at line 689
Premature end of data in tag index line 171117, line 171118, column 1 (LBD75-70%-MICELIO_POS_1-19_01_688.mzML, line 171118)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124659047-1862598 03H02_rep_B_Etodolaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124659047-1862598 03H02_rep_B_Etodolaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201414605-1881907 16B02_rep_C_Ipriflavonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201414605-1881907 16B02_rep_C_Ipriflavonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_E1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113405526-1922427 2_G1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113405526-1922427 2_G1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H8_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_18091336_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_010ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/10/961febbf27318d4b145445e8d8a09a/input_file/QC_20170127_010ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170207_025EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/d5/d105ac0bc2b97ecb9581f27c596579/input_file/SH8_20170207_025EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L15_id_MSn_negative.mzML at line 21
index 307 is out of bounds for axis 0 with size 307
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153705468-1577521 Batch4_977_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151317275-1576355 Batch7_CHAGOK1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151101341-1924743 3_D2_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151101341-1924743 3_D2_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_56.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike3_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B6_id.mzML at line 21
index 523 is out of bounds for axis 0 with size 523
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_G8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170209_069ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/95/942d22591061b47987b34b38412757/input_file/MMW6_20170209_069ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153857353-1577615 Batch7_EKVX_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/codB_#1_P4C7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (codB_#1_P4C7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123853348-1876311 08B02_rep_C_Tetracaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123853348-1876311 08B02_rep_C_Tetracaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_4_P4A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (ctrl_4_P4A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdgT_P3A3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (kdgT_P3A3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112603938-1922047 4_H1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112603938-1922047 4_H1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D7_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6H12_160603172551.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES337.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L14_id.mzML at line 21
index 517 is out of bounds for axis 0 with size 517
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_C4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dgcZ_#1_P5E7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (dgcZ_#1_P5E7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_156_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1045.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD6_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroL_P3H10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (aroL_P3H10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101233584-1869366 07G04_rep_B_Betahistine_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101233584-1869366 07G04_rep_B_Betahistine_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3F09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152658962-1868256 06B10_rep_A_Bisacodyla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152658962-1868256 06B10_rep_A_Bisacodyla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123407695-1876083 08E03_rep_B_Tizanidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123407695-1876083 08E03_rep_B_Tizanidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201226820-1881826 16E10_rep_B_Zoledronic_acid_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201226820-1881826 16E10_rep_B_Zoledronic_acid_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_15102011_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M10_id_MSn_negative.mzML at line 21
index 363 is out of bounds for axis 0 with size 363
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_E5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_E5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GH9_01_11757.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/603.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190128132119.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200947712-1877714 09G05_rep_B_Bromopridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200947712-1877714 09G05_rep_B_Bromopridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223942091-2227724 PAT40.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/248.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_F11_id_MSn_negative.mzML at line 21
index 329 is out of bounds for axis 0 with size 329
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GG3_01_16862.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D2_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control228_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control228_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/oppC_P3A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (oppC_P3A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GA3_01_11614.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_10mM_L_AC_AS_Pos.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_10mM_L_AC_AS_Pos.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112555939-1922040 4_F3_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112555939-1922040 4_F3_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112144418-1921820 3_D7_GPR1_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112144418-1921820 3_D7_GPR1_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12onlyDiluted_Replicate2_Level1_MSMS_neg.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121657431-1879584 15D06_rep_A_Triclosana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121657431-1879584 15D06_rep_A_Triclosana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_82.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_65.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0028_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111917267-1921694 2_C2_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111917267-1921694 2_C2_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170207_021EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b5/e763cdcb08437e2012fcf3789037eb/input_file/MMW6_20170207_021EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/006_Ammonia_Day2_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153005529-1577183 Batch3_MGHU3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124839197-1876741 12D03_rep_C_Monobenzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124839197-1876741 12D03_rep_C_Monobenzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123632318-1876199 08C10_rep_C_Azelastine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123632318-1876199 08C10_rep_C_Azelastine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD6_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/10 Sept 2021/converted/210916_tanaka10.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223948158-2227729 PAT50.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201942386-1878153 09G10_rep_D_Trioxsalenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201942386-1878153 09G10_rep_D_Trioxsalenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153429361-1577392 Batch4_NCIH1869_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_47_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_47_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220222_LKM_MouseBrain_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potH_P4B12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (potH_P4B12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ANT1_40EV_RA3_01_22649.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121608693-1867018 04G09_rep_B_Pimozidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121608693-1867018 04G09_rep_B_Pimozidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201603141-1881986 16H10_rep_C_Desonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201603141-1881986 16H10_rep_C_Desonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30254 - GI-19-025.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_60.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125325805-1862908 03H11_rep_C_Proglumidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125325805-1862908 03H11_rep_C_Proglumidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_194_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082691/ccms_peak/ST000662/EX00303-lipidomics/Raw data/NEG/20140614_Pooled.mzXML at line 689
Opening and ending tag mismatch: peaks line 28122 and msRun, line 41870, column 11 (20140614_Pooled.mzXML, line 41870)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GD9_01_11676.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101852550-1869670 07E05_rep_D_Tiabendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101852550-1869670 07E05_rep_D_Tiabendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122351000-1879898 15G08_rep_C_Docetaxela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122351000-1879898 15G08_rep_C_Docetaxela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170125_037EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/62/fdc3fbd3aa339ae958bca3cf60b8cc/input_file/MMW3_20170125_037EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M3_id_MSn_positive.mzML at line 21
index 643 is out of bounds for axis 0 with size 643
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222953006-1869920 01C01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222953006-1869920 01C01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151342284-1924882 4_C10_SNF3_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151342284-1924882 4_C10_SNF3_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121133674-1879341 14D11_rep_D_Methiazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121133674-1879341 14D11_rep_D_Methiazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145616992-1863936 02G11_rep_A_Dihydroergotamine tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145616992-1863936 02G11_rep_A_Dihydroergotamine tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202255735-1878305 10A02_rep_A_Althiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202255735-1878305 10A02_rep_A_Althiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121838710-1879661 15C06_rep_B_Celecoxibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121838710-1879661 15C06_rep_B_Celecoxibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_C2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200641844-1881571 16E02_rep_A_Cefuroxime_axetila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200641844-1881571 16E02_rep_A_Cefuroxime_axetila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_G8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223843895-1870324 01F05_rep_C_Mefenamic acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223843895-1870324 01F05_rep_C_Mefenamic acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/613.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rfbC_P4H5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (rfbC_P4H5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111823214-1872052 10D11_rep_C_Pipenzolate_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111823214-1872052 10D11_rep_C_Pipenzolate_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Verrucosispora_sp_MS100141_DP_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_A5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/CPV_B_rep_2_B-A7_1_5639.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094792/raw/raw_files/p1.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151902980-1576642 Batch7_NCIH1693_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_79.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_155_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_B11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/162_127.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/773.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223019269-1869939 01H03_rep_A_Imipramine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223019269-1869939 01H03_rep_A_Imipramine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/98.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201628622-1878006 09E10_rep_C_Butylscopolammonium_(n-)_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201628622-1878006 09E10_rep_C_Butylscopolammonium_(n-)_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GH2_01_16878.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD1_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_RBC_1h_NEG.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer4_RBC_1h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD3_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007537_031618-1Thr6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_3_Dorsal_skin_HO_control_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_3_Dorsal_skin_HO_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_C5_id_positive.mzML at line 21
index 356 is out of bounds for axis 0 with size 356
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frlC_P3H3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (frlC_P3H3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_97.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M17_id_MSn_negative.mzML at line 21
index 296 is out of bounds for axis 0 with size 296
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122023355-1879740 15G10_rep_B_Imiquimoda.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122023355-1879740 15G10_rep_B_Imiquimoda.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123505520-1876130 08E05_rep_B_Butenafine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123505520-1876130 08E05_rep_B_Butenafine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201542516-1881970 16G06_rep_C_Ampiroxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201542516-1881970 16G06_rep_C_Ampiroxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample225_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/OVA1_MS_RA8_01_22611.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113655180-1922573 2_G3_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113655180-1922573 2_G3_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/16032021_Batch06_QC_ 6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S25_0124_190125032820.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1H001B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124338432-1876540 09D05_rep_A_Nalidixic_acid_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124338432-1876540 09D05_rep_A_Nalidixic_acid_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130154926-1877344 13B10_rep_B_Ozagrel_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130154926-1877344 13B10_rep_B_Ozagrel_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201129018-1877788 09C03_rep_B_D,L-Penicillaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201129018-1877788 09C03_rep_B_D,L-Penicillaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125729729-1863107 03G09_rep_D_Tropicamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125729729-1863107 03G09_rep_D_Tropicamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114839857-1875184 12D06_rep_B_Lorglumide_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114839857-1875184 12D06_rep_B_Lorglumide_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_C6_id_negative.mzML at line 21
index 226 is out of bounds for axis 0 with size 226
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argO_P3G7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (argO_P3G7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1I002B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_17091608_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-191_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_120208_MPAO1_polar.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152848901-1577118 Batch3_EPLC272H_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113244863-1922356 1_C1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113244863-1922356 1_C1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153401134-1577369 Batch4_NCIH1793_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092259/ccms_peak/Sample0005.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152508968-1576934 Batch2_OVCAR4_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075706.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151238934-1576323 Batch5_NCIH1755_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121324439-1879423 15A05_rep_A_Sulbactamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121324439-1879423 15A05_rep_A_Sulbactamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ldtD_P3C11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (ldtD_P3C11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224347657-1870560 01E05_rep_D_Isoxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224347657-1870560 01E05_rep_D_Isoxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124658833-1876697 09G05_rep_A_Bromoprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124658833-1876697 09G05_rep_A_Bromoprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_15.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_15.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101409856-1869443 07H04_rep_C_Pentamidine_isethionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101409856-1869443 07H04_rep_C_Pentamidine_isethionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100929410-1869219 07F11_rep_A_Clorsulona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100929410-1869219 07F11_rep_A_Clorsulona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125455793-1877024 12B02_rep_D_Cortisol_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125455793-1877024 12B02_rep_D_Cortisol_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201431114-1877921 09H09_rep_C_Fluorometholoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201431114-1877921 09H09_rep_C_Fluorometholoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_G5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151728722-1925069 4_C4_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151728722-1925069 4_C4_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysQ_#1_P5F1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (cysQ_#1_P5F1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170125_040EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ec/73268769bfb4614b52204fc6356461/input_file/SH8_20170125_040EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GB8_01_12088.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K12_id_MSn_positive.mzML at line 21
index 562 is out of bounds for axis 0 with size 562
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_D4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125507299-1877033 12B07_rep_D_N-Acetyl-L-leucinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125507299-1877033 12B07_rep_D_N-Acetyl-L-leucinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124614733-1862563 03D01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124614733-1862563 03D01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H5_id_MSn_negative.mzML at line 21
index 347 is out of bounds for axis 0 with size 347
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/004_1018_3_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101837513-1869658 07E09_rep_D_Triflusalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101837513-1869658 07E09_rep_D_Triflusalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD2_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190128_ES_H3K_batch15_repC_217.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202121114-1878230 09A03_rep_D_Gefitiniba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202121114-1878230 09A03_rep_D_Gefitiniba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/11_D24062013T1650_1399CBU_01QC_B2.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123020384-1875900 08F09_rep_A_Acipimoxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123020384-1875900 08F09_rep_A_Acipimoxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_dilute_190131180306.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB4H01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122727462-1880065 15C06_rep_D_Celecoxibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122727462-1880065 15C06_rep_D_Celecoxibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_10_305_prot_17_IMS_12Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/339.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_A3_id_positive.mzML at line 21
index 377 is out of bounds for axis 0 with size 377
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_G1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNY243_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150702366-1864921 02D08_rep_C_Chlorpheniramine maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150702366-1864921 02D08_rep_C_Chlorpheniramine maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD6_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122547011-1879987 15B04_rep_D_Bromhexine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122547011-1879987 15B04_rep_D_Bromhexine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlC1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraControlC1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201129173-1881783 16E09_rep_B_Homoveratrylaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201129173-1881783 16E09_rep_B_Homoveratrylaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B10_id_negative.mzML at line 21
index 273 is out of bounds for axis 0 with size 273
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Pos/P1.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153029121-1577200 Batch3_SKMEL5_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/898.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114042244-1874805 11F10_rep_D_Fluvastatin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114042244-1874805 11F10_rep_D_Fluvastatin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113018006-1874347 11F10_rep_B_Fluvastatin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113018006-1874347 11F10_rep_B_Fluvastatin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092942427-1879076 14G07_rep_C_Meropenema.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092942427-1879076 14G07_rep_C_Meropenema.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample040_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113834207-1922659 3_F5_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113834207-1922659 3_F5_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gph_P4D11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (gph_P4D11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151002517-1865061 02C01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151002517-1865061 02C01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I19_id_MSn_negative.mzML at line 21
index 355 is out of bounds for axis 0 with size 355
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/upp_P4H2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (upp_P4H2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170127_032ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/9a/3bf71b482a6967d94e2ca9884385e3/input_file/SH8_20170127_032ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223021980-1869941 01C02_rep_A_Sulfaphenazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223021980-1869941 01C02_rep_A_Sulfaphenazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/37-4_idMsMs_25min_50eV_GE6_01_4263.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151327460-1924869 3_D11_SNF3_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151327460-1924869 3_D11_SNF3_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_B9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007559_031618-1CRP6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample17n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_0123_190123215135.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/otsB_#1_P4B2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (otsB_#1_P4B2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122605141-1880001 15D01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122605141-1880001 15D01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8C18.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Methylobacterium_LYG017A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124632282-1876676 09E05_rep_A_Mirabegrona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124632282-1876676 09E05_rep_A_Mirabegrona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET43.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET43.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudG_#1_P5D10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (nudG_#1_P5D10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_388.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201444634-1877931 09D07_rep_C_Beta-Escinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201444634-1877931 09D07_rep_C_Beta-Escinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153330664-1868558 06F07_rep_B_Meclocycline_sulfosalicylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153330664-1868558 06F07_rep_B_Meclocycline_sulfosalicylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121933401-1867179 04F11_rep_C_Diperodon_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121933401-1867179 04F11_rep_C_Diperodon_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_21_Blood_EtOH_control_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_21_Blood_EtOH_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152753469-1577071 Batch2_PC3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/7_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD6_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150933785-1865039 02G10_rep_D_Thioproperazine dimesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150933785-1865039 02G10_rep_D_Thioproperazine dimesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/346.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083449/peak/NIH_synthesis_UV_mzML/B_NP_Lib.mzML at line 689
AttValue: ' expected, line 257832, column 47 (B_NP_Lib.mzML, line 257832)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/idnD_#1_P4B7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (idnD_#1_P4B7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_115_1C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151912267-1867893 05A07_rep_C_Methyldopa_(L,-)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151912267-1867893 05A07_rep_C_Methyldopa_(L,-)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151630698-1925020 4_C11_SNF3_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151630698-1925020 4_C11_SNF3_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_101.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223824913-1870309 01D05_rep_C_Triamterenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223824913-1870309 01D05_rep_C_Triamterenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130854701-1877675 13A02_rep_C_Denatonium_benzoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130854701-1877675 13A02_rep_C_Denatonium_benzoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHF11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sad_#1_P5D8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (sad_#1_P5D8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152228203-1868049 05B04_rep_D_Zidovudine,_AZTb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152228203-1868049 05B04_rep_D_Zidovudine,_AZTb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_12_liver_RESV_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_12_liver_RESV_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_55_AC+54.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092844938-1879030 14C10_rep_C_Mesalaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092844938-1879030 14C10_rep_C_Mesalaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130425007-1877461 13E01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130425007-1877461 13E01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112257863-1921884 3_C9_GPR1_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112257863-1921884 3_C9_GPR1_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wzxE_P5F5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (wzxE_P5F5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202502564-1878405 10F01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202502564-1878405 10F01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fdoI_P3A3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (fdoI_P3A3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151619477-1576506 Batch7_MIAPACA2_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124852780-1876751 12C06_rep_C_Urapidil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124852780-1876751 12C06_rep_C_Urapidil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/NEC1_20EV_RA7_01_22603.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092439651-1878839 14C06_rep_B_Milrinoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092439651-1878839 14C06_rep_B_Milrinoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202227907-1882284 16E03_rep_D_Anagrelideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202227907-1882284 16E03_rep_D_Anagrelideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224039101-1870412 01G09_rep_D_Isoxsuprine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224039101-1870412 01G09_rep_D_Isoxsuprine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130848578-1877670 13E04_rep_C_Azapropazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130848578-1877670 13E04_rep_C_Azapropazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111448873-1921078 1_E9_GAP1_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111448873-1921078 1_E9_GAP1_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES20.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/267.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_51.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_51.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114246684-1874906 12F09_rep_A_Benserazide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114246684-1874906 12F09_rep_A_Benserazide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151203041-1924796 3_F9_SNF3_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151203041-1924796 3_F9_SNF3_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_meoh.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/150-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152611834-1576986 Batch2_OVCAR3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009618_IBD200_E1_B10.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/ka viqqi/converted coba2/200609_sample_50.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D1_preFOS_3_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GG6_01_17225.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150300847-1864735 02H07_rep_B_Ivermectinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150300847-1864735 02H07_rep_B_Ivermectinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_C5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike0_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/005_CRa_H9M5_M470_Blank_02_high_pos.mzXML at line 689
Premature end of data in tag peaks line 15486, line 15490, column 52718 (005_CRa_H9M5_M470_Blank_02_high_pos.mzXML, line 15490)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fdhF_P5F8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (fdhF_P5F8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_C7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/076_74.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152513843-1576938 Batch2_OVCAR8_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_59.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample118_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/568-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223828699-1870312 01H10_rep_C_Diphemanil methylsulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223828699-1870312 01H10_rep_C_Diphemanil methylsulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/melA_#1_P4B11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (melA_#1_P4B11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111752686-1872028 10A07_rep_C_Mephentermine_hemisulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111752686-1872028 10A07_rep_C_Mephentermine_hemisulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ2_4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150531608-1924459 1_G8_RGT2_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150531608-1924459 1_G8_RGT2_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/165-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3E08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150403884-1924385 1_E9_RGT2_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150403884-1924385 1_E9_RGT2_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_230.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike1_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111924374-1872581 10E04_rep_C_Meclofenoxate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111924374-1872581 10E04_rep_C_Meclofenoxate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample049_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30170 - GI-19-001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092440921-1878840 14G09_rep_B_Mephenytoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092440921-1878840 14G09_rep_B_Mephenytoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124502401-1876609 09B10_rep_A_6-Furfurylaminopurineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124502401-1876609 09B10_rep_A_6-Furfurylaminopurineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121932120-1867178 04F11_rep_C_Diperodon_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121932120-1867178 04F11_rep_C_Diperodon_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std a 010a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151318473-1576356 Batch7_HOP62_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR13h2a.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/011_20uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD2_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B11_id_MSn_negative.mzML at line 21
index 253 is out of bounds for axis 0 with size 253
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD5_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124630012-1862575 03G07_rep_B_Griseofulvinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124630012-1862575 03G07_rep_B_Griseofulvinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI3_1_13_1_882.mzML at line 689
AttValue: ' expected, line 3445228, column 112 (50130_microPOTS_Rat_Brain_ROI3_1_13_1_882.mzML, line 3445228)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/017_CRa_H9M5_M470_H03_K1_low_pos.mzXML at line 689
Premature end of data in tag peaks line 16512, line 16516, column 3576 (017_CRa_H9M5_M470_H03_K1_low_pos.mzXML, line 16516)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122901086-1875838 08H11_rep_A_Sertindolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122901086-1875838 08H11_rep_A_Sertindolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100915279-1869208 07D05_rep_A_Pyrazinamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100915279-1869208 07D05_rep_A_Pyrazinamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125519952-1863001 03G10_rep_D_Nefopam_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125519952-1863001 03G10_rep_D_Nefopam_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_19080521_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_Blood4_NEG.mzXML at line 689
attributes construct error, line 38, column 74 (Person4_Blood4_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125222644-1862857 03B07_rep_C_Iproniazide_phosphateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125222644-1862857 03B07_rep_C_Iproniazide_phosphateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_CABIN_sample11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1216.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1216.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_68_AC+_50.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112006042-1872614 10H10_rep_C_Pridinol_methanesulfonate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112006042-1872614 10H10_rep_C_Pridinol_methanesulfonate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153252107-1577313 Batch4_SW156_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GD5_01_16948.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180630_ES_H3K_bacth9_repA_131.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092827519-1879016 14D04_rep_B_Bethanechol_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092827519-1879016 14D04_rep_B_Bethanechol_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125414816-1876993 12F03_rep_D_S(-)Eticlopride_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125414816-1876993 12F03_rep_D_S(-)Eticlopride_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122731549-1875768 08D04_rep_A_Zaleplona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122731549-1875768 08D04_rep_A_Zaleplona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHD01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200946630-1881707 16E10_rep_A_Zoledronic_acid_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200946630-1881707 16E10_rep_A_Zoledronic_acid_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C11_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Microbacterium_BM5F001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHB001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210112_AD_76.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1069.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GF10_01_17215.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sodB_P5B2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (sodB_P5B2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124944157-1862730 03F07_rep_C_Tiapride_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124944157-1862730 03F07_rep_C_Tiapride_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C12_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample188.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/239.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/478-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H11_id_MSn_negative.mzML at line 21
index 324 is out of bounds for axis 0 with size 324
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C9_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130340568-1877426 13A05_rep_B_Methacycline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130340568-1877426 13A05_rep_B_Methacycline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8B08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2D02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151945112-1576677 Batch1_BT549_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frlD_#2_P5B2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (frlD_#2_P5B2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pldB_P4H4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (pldB_P4H4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dhaK_P3D9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (dhaK_P3D9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD1_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153652406-1577510 Batch4_RT4_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trxB_P3C7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (trxB_P3C7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_53.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153626799-1868698 06F09_rep_C_Melatonina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153626799-1868698 06F09_rep_C_Melatonina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_E12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153011566-1868405 06E05_rep_A_Oxcarbazepineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153011566-1868405 06E05_rep_A_Oxcarbazepineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152813669-1577088 Batch3_PANC0327_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/002_Soil_10mMExtra_1_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GE12_01_17080.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G14P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8D06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fadI_#1_P5E3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (fadI_#1_P5E3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Blank_pesticide.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150505696-1864831 02H09_rep_C_Neomycin sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150505696-1864831 02H09_rep_C_Neomycin sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114722328-1875122 12H02_rep_B_Crotamitona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114722328-1875122 12H02_rep_B_Crotamitona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_P_HCL17.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD6_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121312429-1879414 15B08_rep_A_Carvedilola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121312429-1879414 15B08_rep_A_Carvedilola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2C03P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/671.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/allE_P3E5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (allE_P3E5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narH_P3G5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (narH_P3G5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124254655-1862288 03G01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124254655-1862288 03G01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control239_pos.mzXML at line 689
attributes construct error, line 37, column 75 (Control239_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisM_#1_P3H8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (hisM_#1_P3H8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111928025-1921703 2_D1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111928025-1921703 2_D1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/631.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/001_Nitrate_Day0_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S92.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S92.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092153/peak/Sample0010.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113824177-1922651 3_E9_STE2_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113824177-1922651 3_E9_STE2_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_03_480_prot_11_IMS_26Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_D8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151612260-1576500 Batch7_NCIH441_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124431834-1876584 09B08_rep_A_Benzamil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124431834-1876584 09B08_rep_A_Benzamil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/006_Ammonia_Day11_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_59.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIAB04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1423.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1423.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/OVA2_30EV_RA2_01_22490.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170127_031ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/8a/0d0d27692337d6d0417898389417af/input_file/SH9_20170127_031ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD6_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170127_068ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/54/f12bdd36ae5e220564c760565e96e0/input_file/SH10_20170127_068ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lipA_#1_P4D5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (lipA_#1_P4D5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L19_id_MSn_positive.mzML at line 21
index 523 is out of bounds for axis 0 with size 523
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151254273-1576336 Batch5_PC14PE6_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153208807-1577278 Batch4_DMS114_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153930642-1577643 Batch7_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125241225-1862872 03B01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125241225-1862872 03B01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130032111-1863258 04D09_rep_A_Cinnarizinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130032111-1863258 04D09_rep_A_Cinnarizinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F21_id_MSn_negative.mzML at line 21
index 317 is out of bounds for axis 0 with size 317
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151839127-1867867 05A11_rep_C_Bisoprolol_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151839127-1867867 05A11_rep_C_Bisoprolol_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fucI_P3H9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (fucI_P3H9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113827543-1922653 3_B2_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113827543-1922653 3_B2_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-016_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/prpC_P3E6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (prpC_P3E6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124135286-1876440 08F09_rep_D_Acipimoxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124135286-1876440 08F09_rep_D_Acipimoxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121703375-1867061 04G01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121703375-1867061 04G01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223743404-1870277 01H08_rep_C_Prednisonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223743404-1870277 01H08_rep_C_Prednisonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_67_Blank.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_67_Blank.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K17_id_MSn_negative.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K9_id_MSn_negative.mzML at line 21
index 335 is out of bounds for axis 0 with size 335
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_19040307_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112534313-1922021 4_G7_GPR1_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112534313-1922021 4_G7_GPR1_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223901592-1870338 01H06_rep_C_Adiphenine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223901592-1870338 01H06_rep_C_Adiphenine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170125_026EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/f5/657485cddd32a55383a0fb76625dad/input_file/MMW5_20170125_026EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET30.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET30.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/639.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200648412-1881576 16E05_rep_A_Benzoxiquineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200648412-1881576 16E05_rep_A_Benzoxiquineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112005226-1921735 2_D8_GAP1_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112005226-1921735 2_D8_GAP1_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223734452-2227613 PAT36.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mog_P3C3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (mog_P3C3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124458732-1876606 09A02_rep_A_Sulmazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124458732-1876606 09A02_rep_A_Sulmazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/allantoin.mzXML at line 689
Premature end of data in tag peaks line 5447, line 5451, column 65002 (allantoin.mzXML, line 5451)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113459435-1922474 2_D9_IZH2_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113459435-1922474 2_D9_IZH2_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/428.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/019_CRa_H9M5_M470_C01_K3_low_pos.mzXML at line 689
Premature end of data in tag peaks line 15942, line 15946, column 11767 (019_CRa_H9M5_M470_C01_K3_low_pos.mzXML, line 15946)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152715964-1868269 06E02_rep_A_Estradiol-17_betab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152715964-1868269 06E02_rep_A_Estradiol-17_betab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S76.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S76.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_G6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201047973-1877758 09C05_rep_B_Loratadinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201047973-1877758 09C05_rep_B_Loratadinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417111344.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153148682-1577262 Batch3_KNS62_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090213/raw/9March2022_026_VH WD Trang 10x_neg 3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD1_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.afg_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210112_AD_27.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample195_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yigL_P3B3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (yigL_P3B3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098955/peak/mzml/poolqc_8.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000098955/peak/mzml/poolqc_8.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100534332-1869031 06E09_rep_D_Hydroxytacrine_maleate_(R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100534332-1869031 06E09_rep_D_Hydroxytacrine_maleate_(R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_H8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_H8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/242.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125541065-1863018 03G07_rep_D_Griseofulvina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125541065-1863018 03G07_rep_D_Griseofulvina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150333214-1924359 1_F2_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150333214-1924359 1_F2_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201340712-1877884 09D02_rep_C_Dydrogesteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201340712-1877884 09D02_rep_C_Dydrogesteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc037_pos.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc037_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H9_id_MSn_positive.mzML at line 21
index 432 is out of bounds for axis 0 with size 432
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125231269-1862864 03D09_rep_C_Salbutamola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125231269-1862864 03D09_rep_C_Salbutamola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124847717-1862685 03F06_rep_B_Mefexamide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124847717-1862685 03F06_rep_B_Mefexamide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115037066-1875279 12H06_rep_B_Florfenicolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115037066-1875279 12H06_rep_B_Florfenicolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rpe_P4G3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (rpe_P4G3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_03.mzXML at line 689
Premature end of data in tag peaks line 21357, line 21361, column 7750 (20121114_03.mzXML, line 21361)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_358.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125955145-1877255 13G01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125955145-1877255 13G01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202233191-1878287 10G05_rep_A_Bendroflumethiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202233191-1878287 10G05_rep_A_Bendroflumethiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130645257-1877571 13A04_rep_C_Enilconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130645257-1877571 13A04_rep_C_Enilconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNS654_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152237107-1868056 05F04_rep_D_Amethopterin_(R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152237107-1868056 05F04_rep_D_Amethopterin_(R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N10_id_MSn_positive.mzML at line 21
index 527 is out of bounds for axis 0 with size 527
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_F5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1E02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085103/peak/mzML/JB-182_100um_ph2.mzML at line 689
Premature end of data in tag binary line 147349, line 147349, column 18824 (JB-182_100um_ph2.mzML, line 147349)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR124h3b.mzML at line 689
attributes construct error, line 23258, column 122 (pBpumR124h3b.mzML, line 23258)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/blank_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hB3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hB3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114933002-1875227 12D02_rep_B_(+)-Isoproterenol_(+)-bitartrate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114933002-1875227 12D02_rep_B_(+)-Isoproterenol_(+)-bitartrate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S005_0124_190125041803.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_86.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pepD_#2_P5D3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (pepD_#2_P5D3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_G3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O6_id_negative.mzML at line 21
index 250 is out of bounds for axis 0 with size 250
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B20_id.mzML at line 21
index 535 is out of bounds for axis 0 with size 535
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153107625-1577229 Batch3_NCIH661_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R224h3a.mzML at line 689
Opening and ending tag mismatch: binary line 83572 and isolationWindow, line 83573, column 33 (pBlichMO17R224h3a.mzML, line 83573)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1326.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1326.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate12/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_80.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR331_5h2a.mzML at line 689
Opening and ending tag mismatch: binary line 185866 and binaryDataArray, line 185867, column 31 (pMIBSDR331_5h2a.mzML, line 185867)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mepH_#1_P4C2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (mepH_#1_P4C2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_012712_Pseudomonas_3w11m1.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121710503-1879594 15D05_rep_A_Ambrisentana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121710503-1879594 15D05_rep_A_Ambrisentana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125340394-1876967 12E08_rep_D_Quinapril_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125340394-1876967 12E08_rep_D_Quinapril_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_130.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_130.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD2_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/562-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190109_ES_H3K_batch12_repB_180.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152848888-1868341 06D03_rep_A_Corticosteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152848888-1868341 06D03_rep_A_Corticosteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E12_id_MSn_negative.mzML at line 21
index 321 is out of bounds for axis 0 with size 321
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201034155-1877748 09C10_rep_B_Zonisamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201034155-1877748 09C10_rep_B_Zonisamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111748123-1921618 1_B9_GAP1_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111748123-1921618 1_B9_GAP1_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202539064-1878434 10E08_rep_A_Guanadrel_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202539064-1878434 10E08_rep_A_Guanadrel_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-CCM-PA-QC-13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151350532-1576383 Batch6_OVCAR3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151053485-1865101 02F01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151053485-1865101 02F01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GE5_01_11980.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/idnK_#1_P3F10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (idnK_#1_P3F10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153823186-1868792 06E02_rep_C_Estradiol-17_betaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153823186-1868792 06E02_rep_C_Estradiol-17_betaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/006_Soil_500mMIntra_1_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125804096-1877169 13E03_rep_A_Alfaxalonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125804096-1877169 13E03_rep_A_Alfaxalonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/ccms_peak/Raw_Spectrum_Files/ALZ_CBM_P_E3E4_C_31Jan18_Pippin_AQ-17-12-0.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150117221-1864175 02A11_rep_B_Pindolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150117221-1864175 02A11_rep_B_Pindolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H5_id_MSn_positive.mzML at line 21
index 454 is out of bounds for axis 0 with size 454
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124221788-1862262 03G11_rep_A_Phentolamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124221788-1862262 03G11_rep_A_Phentolamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125505229-1862989 03G11_rep_D_Phentolamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125505229-1862989 03G11_rep_D_Phentolamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/134-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153257027-1577317 Batch4_NCIH1793_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121516221-1866977 04A09_rep_B_Clonidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121516221-1866977 04A09_rep_B_Clonidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ompF_#1_P5C11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (ompF_#1_P5C11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101355900-1869432 07B01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101355900-1869432 07B01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145722615-1863989 02F11_rep_A_Tetracycline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145722615-1863989 02F11_rep_A_Tetracycline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/118_104_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_C9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113529755-1874554 11F06_rep_C_Beclomethasone_dipropionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113529755-1874554 11F06_rep_C_Beclomethasone_dipropionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD5_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD5_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/6.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_D8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/451.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc062_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc062_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E4_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw4_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample169_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114011360-1874780 11E08_rep_D_(-)_-Levobunolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114011360-1874780 11E08_rep_D_(-)_-Levobunolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GB2_01_11911.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130416270-1877454 13G03_rep_B_Nifekalantb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130416270-1877454 13G03_rep_B_Nifekalantb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltD_P4F2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (gltD_P4F2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124346938-1862330 03C03_rep_A_Levamisole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124346938-1862330 03C03_rep_A_Levamisole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150438005-1924414 1_G2_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150438005-1924414 1_G2_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122526431-1867463 05G09_rep_A_Dequalinium_dichlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122526431-1867463 05G09_rep_A_Dequalinium_dichlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_80.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_QC1.mzXML at line 689
Premature end of data in tag peaks line 14598, line 14602, column 40425 (L_QC1.mzXML, line 14602)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201216_LKM_700nm_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_59.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_86.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNR698_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GB10_01_17157.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F17_id_MSn_positive.mzML at line 21
index 548 is out of bounds for axis 0 with size 548
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD4_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ5_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_08_CNR_51.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_08_CNR_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD3_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114934247-1875228 12H03_rep_B_Toremifenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114934247-1875228 12H03_rep_B_Toremifenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E20_id_MSn_negative.mzML at line 21
index 332 is out of bounds for axis 0 with size 332
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091905515-1878579 13C08_rep_D_Pramipexole_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091905515-1878579 13C08_rep_D_Pramipexole_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O14_id_MSn_negative.mzML at line 21
index 364 is out of bounds for axis 0 with size 364
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121831132-1867130 04D06_rep_C_Fenofibratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121831132-1867130 04D06_rep_C_Fenofibratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD5_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-036.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-036.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083442/ccms_peak/mzXMLs/181223_COM11_LAC_RPMI_New_Column/mzxml/+COM11_Samp02_TP6_GB6_01_19279.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000083442/ccms_peak/mzXMLs/181223_COM11_LAC_RPMI_New_Column/mzxml/+COM11_Samp02_TP6_GB6_01_19279.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD5_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115016027-1875262 12F03_rep_B_S(-)Eticlopride_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115016027-1875262 12F03_rep_B_S(-)Eticlopride_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_A12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ6_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111511763-1871518 10H06_rep_B_Isocarboxazidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111511763-1871518 10H06_rep_B_Isocarboxazidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125309763-1862895 03H04_rep_C_Hyoscyamine_(L)_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125309763-1862895 03H04_rep_C_Hyoscyamine_(L)_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153129983-1577247 Batch4_MDAMB435S_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151940054-1576673 Batch1_HCC1395_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-059_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G9_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190113_ES_H3K_batch13_repB_188.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K14_id_MSn_negative.mzML at line 21
index 329 is out of bounds for axis 0 with size 329
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD4_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091856601-1878572 13A08_rep_D_Gestrinonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091856601-1878572 13A08_rep_D_Gestrinonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151405338-1576395 Batch6_CALU1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBsubR131_5h3b.mzML at line 689
error parsing attribute name, line 154949, column 27 (pBsubR131_5h3b.mzML, line 154949)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_90.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122701840-1880045 15H02_rep_D_Imatinibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122701840-1880045 15H02_rep_D_Imatinibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112756341-1922146 4_G3_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112756341-1922146 4_G3_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092838885-1879025 14E02_rep_B_(S)-propranolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092838885-1879025 14E02_rep_B_(S)-propranolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydeA_P4G4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (ydeA_P4G4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152626110-1576998 Batch2_NCIH647_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112202308-1873571 10H08_rep_D_Methotrimeprazine_maleat_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112202308-1873571 10H08_rep_D_Methotrimeprazine_maleat_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_19073146_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_RBC_4h_NEG.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer3_RBC_4h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/011_20uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_C6_id_positive.mzML at line 21
index 292 is out of bounds for axis 0 with size 292
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151223203-1576310 Batch5_HCC1187_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2G007.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152805413-1577081 Batch3_HT1197_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ5_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_53.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153246021-1577308 Batch5_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009413_20190702155049_IBD200_E4_B12.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121416023-1866931 04B08_rep_B_Retinoic_acid_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121416023-1866931 04B08_rep_B_Retinoic_acid_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBmegR131_5h2a.mzML at line 88
Invalid base64-encoded string: number of data characters (6661) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113617386-1922541 2_B5_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113617386-1922541 2_B5_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7B01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102103723-1869777 07G02_rep_D_Ciclopirox_ethanolaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102103723-1869777 07G02_rep_D_Ciclopirox_ethanolaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/plsY_P3G12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (plsY_P3G12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200730159-1881607 16C02_rep_A_(R)-Duloxetine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200730159-1881607 16C02_rep_A_(R)-Duloxetine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113020812-1874349 11A03_rep_B_Methazolamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113020812-1874349 11A03_rep_B_Methazolamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122154640-1867292 04G04_rep_D_Telenzepine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122154640-1867292 04G04_rep_D_Telenzepine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122750685-1875783 08F02_rep_A_Loracarbefb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122750685-1875783 08F02_rep_A_Loracarbefb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_0126_190128224558.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNB091_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112057039-1873039 10G06_rep_C_Dicumarolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112057039-1873039 10G06_rep_C_Dicumarolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172657599-1889913 stdb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/007_1029_2_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153051122-1577216 Batch3_MGHU3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hD2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hD2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/proC_P3D2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (proC_P3D2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202503873-1878406 10H04_rep_A_Cloperastine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202503873-1878406 10H04_rep_A_Cloperastine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114013971-1874782 11F03_rep_D_Nylidrina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114013971-1874782 11F03_rep_D_Nylidrina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_183.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145640681-1863955 02E05_rep_A_Tioconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145640681-1863955 02E05_rep_A_Tioconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111800103-1921628 2_C4_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111800103-1921628 2_C4_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case89_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case89_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152931731-1868375 06A08_rep_A_Adamantamine_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152931731-1868375 06A08_rep_A_Adamantamine_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_136.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123643693-1876208 08E07_rep_C_Rimantadine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123643693-1876208 08E07_rep_C_Rimantadine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_UC_050_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GD5_01_11499.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078891/ccms_peak/massive_cyanos/EH_2014_07_14_WT+N.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113016365-1874346 11F10_rep_B_Fluvastatin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113016365-1874346 11F10_rep_B_Fluvastatin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165740144-2227491 PAT33.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125025013-1876820 12A02_rep_C_Niacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125025013-1876820 12A02_rep_C_Niacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH2.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample073.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091819613-1878542 13F10_rep_D_Tribenosidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091819613-1878542 13F10_rep_D_Tribenosidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170125_015EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/83/e7909fa983938e69732259c3dec017/input_file/MMW6_20170125_015EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fepC_P5G8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (fepC_P5G8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/16032021_Batch06_QC_ 8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tauD_#1_P4F1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (tauD_#1_P4F1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2B01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GC3_01_11949.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/747.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G16_id_MSn_positive.mzML at line 21
index 510 is out of bounds for axis 0 with size 510
Error processing file: /data/datasets/server/MassIVE/MSV000094756/peak/02_TO_mLiver_Sup_HILIC_neg.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152911211-1868359 06G04_rep_A_Metrizamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152911211-1868359 06G04_rep_A_Metrizamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GE6_01_17074.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I16_id_MSn_negative.mzML at line 21
index 343 is out of bounds for axis 0 with size 343
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170209_062ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/dc/305aa4667b82fd702e3c29b20b4707/input_file/SH8_20170209_062ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092088/updates/2023-07-17_ste_labbioquimi_05cfd127/peak/Branco_S_7.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ3_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_2_B-A2_1_5629.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8F11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD3_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100141159-1868847 06D04_rep_D_Cyanocobalamina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100141159-1868847 06D04_rep_D_Cyanocobalamina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD6_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_123.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_123.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_blood_0h_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Volunteer1_blood_0h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210120_AD_43.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_dilute.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153925979-1577639 Batch6_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-128_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170127_051ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e9/a7684ad8a271640c5030f350eaff6b/input_file/MMW5_20170127_051ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145937987-1864098 02E04_rep_B_Dehydrocholic acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145937987-1864098 02E04_rep_B_Dehydrocholic acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LEA1_30EV_RA8_01_22692.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5T2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5T2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M22_id_MSn_positive.mzML at line 21
index 418 is out of bounds for axis 0 with size 418
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112357214-1921936 3_B3_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112357214-1921936 3_B3_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_D2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152847549-1868340 06D03_rep_A_Corticosteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152847549-1868340 06D03_rep_A_Corticosteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112246600-1921874 3_E4_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112246600-1921874 3_E4_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7H06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122428094-1879926 15F01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122428094-1879926 15F01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113936548-1874752 11D06_rep_D_Zolmitriptana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113936548-1874752 11D06_rep_D_Zolmitriptana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/proW_#1_P4C8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (proW_#1_P4C8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_B2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J23_id_negative.mzML at line 21
index 257 is out of bounds for axis 0 with size 257
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Bacillus_subtilis_PY79_02.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_30_2022_1003_Michael_leming_liver_neg-0.0056.mzML at line 689
Premature end of data in tag binary line 3510, line 3510, column 3345726 (3_30_2022_1003_Michael_leming_liver_neg-0.0056.mzML, line 3510)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-cc4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114122149-1874837 11H11_rep_D_Carbacholb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114122149-1874837 11H11_rep_D_Carbacholb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/PED1_20EV_RA5_01_22664.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_126b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A9_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample173_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/1odec11eg3p_plsC_P3A2_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024895 (1odec11eg3p_plsC_P3A2_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/890.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nhaA_P4A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (nhaA_P4A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metK_P5D10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (metK_P5D10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-CCM-PA-QC-14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control226_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control226_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ12151457.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/iscU_P4E5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (iscU_P4E5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112423229-1874069 10C02_rep_D_Nadideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112423229-1874069 10C02_rep_D_Nadideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151305250-1924850 3_F3_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151305250-1924850 3_F3_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113141671-1874409 11B06_rep_B_Fosfosalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113141671-1874409 11B06_rep_B_Fosfosalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.liv_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200814498-1881639 16C05_rep_A_Nitazoxanidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200814498-1881639 16C05_rep_A_Nitazoxanidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_138.mzXML at line 689
Premature end of data in tag peaks line 22955, line 22959, column 15941 (20121114_138.mzXML, line 22959)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153329021-1577343 Batch4_CAKI1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114126932-1874841 11C04_rep_D_Sulfamonomethoxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114126932-1874841 11C04_rep_D_Sulfamonomethoxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L78cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L78cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ansA_P3F12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (ansA_P3F12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151147772-1924783 3_G5_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151147772-1924783 3_G5_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125138718-1876874 12B04_rep_C_Felbinacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125138718-1876874 12B04_rep_C_Felbinacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D23_id_negative.mzML at line 21
index 246 is out of bounds for axis 0 with size 246
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/proY_P4H4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (proY_P4H4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bglA_P3C4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (bglA_P3C4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111836766-1921660 2_H5_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111836766-1921660 2_H5_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112221285-1921852 3_C4_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112221285-1921852 3_C4_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std a 00.3a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091900463-1878575 13E05_rep_D_Meptazinol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091900463-1878575 13E05_rep_D_Meptazinol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123246053-1876017 08B02_rep_B_Tetracaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123246053-1876017 08B02_rep_B_Tetracaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202016780-1882182 16E02_rep_D_Cefuroxime_axetilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202016780-1882182 16E02_rep_D_Cefuroxime_axetilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170209_050ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/92/93b54d7a84698aa63c0b9edb293611/input_file/MMW4_20170209_050ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_cc5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152241198-1576816 Batch2_NCIH2172_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223929413-2227713 Healthy2.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121446289-1866954 04B10_rep_B_Ethacrynic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121446289-1866954 04B10_rep_B_Ethacrynic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ3_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_100.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GA4_01_16904.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_150.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metB_P3C1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (metB_P3C1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124232161-1876486 08C03_rep_D_Camylofine_chlorhydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124232161-1876486 08C03_rep_D_Camylofine_chlorhydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S52.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S52.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112053264-1921776 2_D4_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112053264-1921776 2_D4_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152516243-1576940 Batch1_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151854439-1576635 Batch7_M14_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GD4_01_17180.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092233459-1878741 14C11_rep_A_Vorinostatb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092233459-1878741 14C11_rep_A_Vorinostatb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111903948-1921683 2_A3_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111903948-1921683 2_A3_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR13h3a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 130051, column 4470 (pBlateR13h3a.mzML, line 130051)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_18072701_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151346998-1576380 Batch6_RPMI8226_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201349153-1881888 16B09_rep_B_Altrenogestb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201349153-1881888 16B09_rep_B_Altrenogestb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_E10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C7_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200756894-1881626 16D04_rep_A_Benidipine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200756894-1881626 16D04_rep_A_Benidipine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_A2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/003_CRa_H9M5_M470_Pool_02_low_pos.mzXML at line 689
Premature end of data in tag peaks line 10679, line 10683, column 52728 (003_CRa_H9M5_M470_Pool_02_low_pos.mzXML, line 10683)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_B9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1316.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1316.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/dhap_gpsA_P3F3_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024911 (dhap_gpsA_P3F3_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124310732-1862301 03B05_rep_A_Alverine_citrate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124310732-1862301 03B05_rep_A_Alverine_citrate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_14_Dorsal_skin_CMC_control_POS.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_14_Dorsal_skin_CMC_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200956092-1881714 16F11_rep_B_Ritonavirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200956092-1881714 16F11_rep_B_Ritonavirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_387.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD6_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET70.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET70.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8H03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GF5_01_11531.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample086_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/deoD_P3E7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (deoD_P3E7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_23.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_23.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091918225-1878589 13F07_rep_D_Moxonidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091918225-1878589 13F07_rep_D_Moxonidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/176_137.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122940389-1875869 08B09_rep_A_Ropinirole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122940389-1875869 08B09_rep_A_Ropinirole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111910278-1872570 10C10_rep_C_Isoetharine_mesylate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111910278-1872570 10C10_rep_C_Isoetharine_mesylate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124440399-1876591 09B11_rep_A_Avermectin_B1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124440399-1876591 09B11_rep_A_Avermectin_B1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113000866-1922219 1_G5_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113000866-1922219 1_G5_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123119907-1867742 05H08_rep_B_Clomiphene_citrate_(Z,E)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123119907-1867742 05H08_rep_B_Clomiphene_citrate_(Z,E)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_2_Dorsal_skin_HO_control_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_2_Dorsal_skin_HO_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A5_id_MSn_positive_20240408140845.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ1_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200844503-1881661 16D06_rep_A_Cefpiramidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200844503-1881661 16D06_rep_A_Cefpiramidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113652298-1874620 11A07_rep_C_Trimipramine_maleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113652298-1874620 11A07_rep_C_Trimipramine_maleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C9_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125440843-1862969 03C10_rep_D_Aminopurine,_6-benzylb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125440843-1862969 03C10_rep_D_Aminopurine,_6-benzylb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw6_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121709633-1867066 04D08_rep_B_Labetalol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121709633-1867066 04D08_rep_B_Labetalol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I6_id_MSn_negative.mzML at line 21
index 296 is out of bounds for axis 0 with size 296
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113859716-1922682 3_H10_STE2_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113859716-1922682 3_H10_STE2_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD4_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/L-alanyl-L-alanine_neg.mzXML at line 689
Premature end of data in tag peaks line 7207, line 7211, column 73197 (L-alanyl-L-alanine_neg.mzXML, line 7211)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G13P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR224h2b.mzML at line 689
AttValue: " or ' expected, line 84534, column 26 (pBpumR224h2b.mzML, line 84534)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_G7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122331254-1879883 15A02_rep_C_Buspirone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122331254-1879883 15A02_rep_C_Buspirone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152609430-1576984 Batch3_KP4_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case212_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case212_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124226186-1876481 08A10_rep_D_Entacaponeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124226186-1876481 08A10_rep_D_Entacaponeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122002937-1867202 04E04_rep_C_Homochlorcyclizine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122002937-1867202 04E04_rep_C_Homochlorcyclizine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122101316-1879769 15E01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122101316-1879769 15E01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125745596-1877155 13F01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125745596-1877155 13F01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125735804-1863112 04H08_rep_A_Guanethidine_sulfate_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125735804-1863112 04H08_rep_A_Guanethidine_sulfate_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125400041-1876982 12G11_rep_D_Stavudineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125400041-1876982 12G11_rep_D_Stavudineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111558362-1921523 1_G8_GAP1_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111558362-1921523 1_G8_GAP1_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165708628-2227462 PAT51.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091813564-1878537 13F04_rep_D_Deptropine_citrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091813564-1878537 13F04_rep_D_Deptropine_citrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150720392-1864935 02C07_rep_C_Nicorandilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150720392-1864935 02C07_rep_C_Nicorandilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124935665-1876783 12H05_rep_C_Tyloxapolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124935665-1876783 12H05_rep_C_Tyloxapolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murD_P5D7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (murD_P5D7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223635609-1870225 01F02_rep_C_Mupirocina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223635609-1870225 01F02_rep_C_Mupirocina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30257 - GI-19-082.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170207_065EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e3/354d3023186b788342b515ca36ce53/input_file/MMW6_20170207_065EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_73_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_73_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample067.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125050445-1862783 03H05_rep_C_Chlorphensin_carbamateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125050445-1862783 03H05_rep_C_Chlorphensin_carbamateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_036ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/48/ed6c58a54884dd021dc17718ce932c/input_file/QC_20170127_036ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/583.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122726633-1867560 05D10_rep_A_Dextromethorphan_hydrobromide_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122726633-1867560 05D10_rep_A_Dextromethorphan_hydrobromide_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124428228-1876581 09H02_rep_A_Sulfabenzamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124428228-1876581 09H02_rep_A_Sulfabenzamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/322.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152356651-1576876 Batch2_NCIH2444_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_G3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlich1001R231_5h1a.mzML at line 689
Opening and ending tag mismatch: scanList line 249730 and binary, line 249732, column 469 (pBlich1001R231_5h1a.mzML, line 249732)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/citE_#1_P3G2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (citE_#1_P3G2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123215177-1867786 05E08_rep_B_Benfluorexa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123215177-1867786 05E08_rep_B_Benfluorexa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-blank.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150208145-1864695 02A01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150208145-1864695 02A01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152055986-1867977 05D07_rep_C_Adenosine_5'-monophosphate_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152055986-1867977 05D07_rep_C_Adenosine_5'-monophosphate_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike0_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092501178-1878856 14H10_rep_B_Clocortolone_pivalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092501178-1878856 14H10_rep_B_Clocortolone_pivalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114050312-1922780 4_B10_STE2_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114050312-1922780 4_B10_STE2_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-068.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-068.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112826767-1922173 4_D3_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112826767-1922173 4_D3_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151130448-1576267 Batch5_SBC5_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_130.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114452018-1875008 12G10_rep_A_(+,-)-Octopamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114452018-1875008 12G10_rep_A_(+,-)-Octopamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/778.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V1_EDTAk3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152021445-1867949 05C05_rep_C_Clorgyline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152021445-1867949 05C05_rep_C_Clorgyline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/002_Urea_Day0_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201629846-1882006 16D09_rep_C_Diatrizoic_acid_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201629846-1882006 16D09_rep_C_Diatrizoic_acid_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_D7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125614613-1863045 03A04_rep_D_Chlorzoxazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125614613-1863045 03A04_rep_D_Chlorzoxazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165739037-2227490 PAT33.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P18_id.mzML at line 21
index 577 is out of bounds for axis 0 with size 577
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_40x_MSMS_2022_1006_Michael_pos-0008.mzML at line 689
Premature end of data in tag binary line 81519, line 81519, column 929976 (pooled_40x_MSMS_2022_1006_Michael_pos-0008.mzML, line 81519)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_15_Dorsal_skin_CMC_control_NEG.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_15_Dorsal_skin_CMC_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113140965-1922301 1_C10_IZH2_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113140965-1922301 1_C10_IZH2_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114211464-1874877 11E03_rep_D_Trimeprazine_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114211464-1874877 11E03_rep_D_Trimeprazine_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ANT2_50EV_RA5_01_22516.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122936818-1867664 05F05_rep_B_Methylergometrine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122936818-1867664 05F05_rep_B_Methylergometrine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113457860-1874529 11E08_rep_C_(-)_-Levobunolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113457860-1874529 11E08_rep_C_(-)_-Levobunolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C4_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control65_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control65_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153953232-1577662 Batch6_K562_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_A7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/old/MC_MS_Pos_MS_1_2_3_4 Reps/MC_MS_Pos_MS_1_2_3_4 Reps/DataMC_MS_Pos_1_2_3_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/old/MC_MS_Pos_MS_1_2_3_4 Reps/MC_MS_Pos_MS_1_2_3_4 Reps/DataMC_MS_Pos_1_2_3_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145608229-1863929 02G05_rep_A_Loperamide hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145608229-1863929 02G05_rep_A_Loperamide hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170207_022EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ac/a1efb7bd61ba2fb748cdf8a863ad00/input_file/MMW3_20170207_022EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091719116-1878494 13E07_rep_D_Darunavira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091719116-1878494 13E07_rep_D_Darunavira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ4_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_20_AC+_52.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_105.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124505654-1862392 03A09_rep_A_Nitrofurantoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124505654-1862392 03A09_rep_A_Nitrofurantoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD5_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1351.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1351.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28022021_Batch02_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F18_id_MSn_positive.mzML at line 21
index 376 is out of bounds for axis 0 with size 376
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151403996-1576394 Batch6_CALU1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_38_NOR_40.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_38_NOR_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R23h3a.mzML at line 689
Opening and ending tag mismatch: binary line 98326 and binaryDataArray, line 98331, column 31 (pBlichMO17R23h3a.mzML, line 98331)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152722213-1577045 Batch2_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150328267-1924355 1_B2_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150328267-1924355 1_B2_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00077313.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/chaA_P5E3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (chaA_P5E3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112938356-1874318 11B05_rep_A_Cefsulodin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112938356-1874318 11B05_rep_A_Cefsulodin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097681/peak/amino acids/030521-b1-OV-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_69_RIN_50.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_69_RIN_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2E03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C12_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_C7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_P_E4E4_AD_IMS_11Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_47.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_47.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B15_id_MSn_positive.mzML at line 21
index 480 is out of bounds for axis 0 with size 480
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fsaA_P4D2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (fsaA_P4D2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102010162-1869733 07G10_rep_D_Trimetazidine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102010162-1869733 07G10_rep_D_Trimetazidine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/445.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_18091336_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/014_CRa_H9M5_M470_Pool_03_high_pos.mzXML at line 689
Premature end of data in tag peaks line 18393, line 18397, column 44537 (014_CRa_H9M5_M470_Pool_03_high_pos.mzXML, line 18397)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112554781-1922039 4_H4_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112554781-1922039 4_H4_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153925979-1577639 Batch6_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0040_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0040_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121511191-1866973 04D07_rep_B_Bumetanideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121511191-1866973 04D07_rep_B_Bumetanideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151535113-1576469 Batch6_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153319551-1868549 06B11_rep_B_Erlotinibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153319551-1868549 06B11_rep_B_Erlotinibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_95.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_95.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/srlD_#2_P3A5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (srlD_#2_P3A5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223323344-1870078 01G04_rep_B_Nifedipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223323344-1870078 01G04_rep_B_Nifedipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_137.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122950602-1875877 08D09_rep_A_Xylazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122950602-1875877 08D09_rep_A_Xylazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_A4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD4_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096505/raw/R.graveolens/AB-6_P1-F-6_01_20332.mzML at line 689
Premature end of data in tag binary line 72625, line 72625, column 47323 (AB-6_P1-F-6_01_20332.mzML, line 72625)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mscK_P3H1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (mscK_P3H1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240408_pluskal_enammol_5004_A2_id_MSn_positive_20240408215542.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121317042-1866887 04D05_rep_B_Prednisoloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121317042-1866887 04D05_rep_B_Prednisoloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114648571-1875096 12D07_rep_B_Nitrendipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114648571-1875096 12D07_rep_B_Nitrendipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/OVA2_20EV_RA2_01_22489.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_A9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_D1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cof_P4C8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (cof_P4C8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080617.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B13_id_MSn_positive.mzML at line 21
index 433 is out of bounds for axis 0 with size 433
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1032.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_0126_190128191004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2C06P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007546_031618-1CRP1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I21_id_MSn_negative.mzML at line 21
index 302 is out of bounds for axis 0 with size 302
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145816645-1864033 02E06_rep_A_Perphenazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145816645-1864033 02E06_rep_A_Perphenazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124231831-1862270 03E09_rep_A_Trimethoprim_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124231831-1862270 03E09_rep_A_Trimethoprim_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_protogens_EB2L004C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_19032111_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112240049-1873601 10A10_rep_D_Sulfanilamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112240049-1873601 10A10_rep_D_Sulfanilamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S01_0126_190128103511.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR27_5h3a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 61592, column 3464 (pMIBSDR27_5h3a.mzML, line 61592)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GA12_01_16938.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D5_id_MSn_positive.mzML at line 21
index 451 is out of bounds for axis 0 with size 451
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrfC_P3G7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (nrfC_P3G7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000096497/peak/20210630_ProgressCurveAnalysis_Gnd_set1_eff3_t5_rep1.mzML at line 689
Premature end of data in tag binary line 337, line 337, column 11631 (20210630_ProgressCurveAnalysis_Gnd_set1_eff3_t5_rep1.mzML, line 337)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/130-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122144048-1879801 15C08_rep_C_Fludarabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122144048-1879801 15C08_rep_C_Fludarabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096662/ccms_peak/Raw/dphn_0hrs_08.mzML at line 689
AttValue: ' expected, line 25466, column 142 (dphn_0hrs_08.mzML, line 25466)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223248172-1870051 01B05_rep_B_Sulfacetamide sodic hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223248172-1870051 01B05_rep_B_Sulfacetamide sodic hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122558713-1879996 15D10_rep_D_Anthralina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122558713-1879996 15D10_rep_D_Anthralina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153322787-1577338 Batch5_NCIH1650_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_dilute_190131235155.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_120_1B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_78.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_78.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafTreatedB2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafTreatedB2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S95.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S95.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150731881-1864944 02C03_rep_C_Amoxapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150731881-1864944 02C03_rep_C_Amoxapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gldA_P4E5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (gldA_P4E5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101812409-1869638 07G08_rep_D_Molsidomineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101812409-1869638 07G08_rep_D_Molsidomineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pstC_P3B11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (pstC_P3B11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ4_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125924212-1877231 13A07_rep_A_Sotalol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125924212-1877231 13A07_rep_A_Sotalol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/104.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100447347-1868993 06G01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100447347-1868993 06G01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100630855-1869076 07B07_rep_A_Tiaprofenic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100630855-1869076 07B07_rep_A_Tiaprofenic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K6_id_MSn_positive.mzML at line 21
index 652 is out of bounds for axis 0 with size 652
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/586.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_C2_id_positive.mzML at line 21
index 353 is out of bounds for axis 0 with size 353
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_92.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_92.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHE02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample024.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ3_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4F05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111332035-1871442 10H08_rep_B_Methotrimeprazine_maleat_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111332035-1871442 10H08_rep_B_Methotrimeprazine_maleat_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223501666-1870153 01A06_rep_B_Atracurium besylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223501666-1870153 01A06_rep_B_Atracurium besylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123334519-1876056 08H07_rep_B_Penciclovira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123334519-1876056 08H07_rep_B_Penciclovira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122957970-1867681 05B03_rep_B_Practololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122957970-1867681 05B03_rep_B_Practololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_18_NOR_48.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_18_NOR_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_0124_190125031144.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_105.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152217359-1576797 Batch2_NCIH2170_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_E10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD4_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090775/peak/converties targeted/SAD8b-t.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224233259-1870501 01H08_rep_D_Prednisonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224233259-1870501 01H08_rep_D_Prednisonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152345368-1576867 Batch2_NCIH460_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0041_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0041_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124217852-1862259 03H05_rep_A_Chlorphensin_carbamatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124217852-1862259 03H05_rep_A_Chlorphensin_carbamatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potB_#1_P4B2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (potB_#1_P4B2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GF7_01_17089.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample10n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151946376-1576678 Batch1_HCC1395_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybiO_P3E1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (ybiO_P3E1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083205.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145830705-1864044 02B09_rep_A_Acetylsalicylsalicylic acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145830705-1864044 02B09_rep_A_Acetylsalicylsalicylic acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125334060-1876962 12E06_rep_D_Thonzonium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125334060-1876962 12E06_rep_D_Thonzonium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Serratia_liquefaciens_P47_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P7_id_MSn_positive.mzML at line 21
index 555 is out of bounds for axis 0 with size 555
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152447180-1576916 Batch2_BT20_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123305763-1867827 05C02_rep_B_Furosemideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123305763-1867827 05C02_rep_B_Furosemideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/593.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100858992-1869195 07C10_rep_A_Bromperidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100858992-1869195 07C10_rep_A_Bromperidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114311597-1874926 12G03_rep_A_Bretylium_tosylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114311597-1874926 12G03_rep_A_Bretylium_tosylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120923788-1879243 14F04_rep_D_Misoprostolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120923788-1879243 14F04_rep_D_Misoprostolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122553897-1867485 05G02_rep_A_Lidoflazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122553897-1867485 05G02_rep_A_Lidoflazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100310886-1868917 06B05_rep_D_Amlodipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100310886-1868917 06B05_rep_D_Amlodipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F22_id_MSn_positive.mzML at line 21
index 574 is out of bounds for axis 0 with size 574
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample12n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1C4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1C4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094756/peak/02_TO_mLiver_Sup_HILIC_pos.mzML at line 689
Specification mandates value for attribute a, line 78870, column 24 (02_TO_mLiver_Sup_HILIC_pos.mzML, line 78870)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S126.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S126.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113127878-1874398 11F01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113127878-1874398 11F01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample38n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GA4_01_17137.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124959217-1862742 03B04_rep_C_Tranylcypromine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124959217-1862742 03B04_rep_C_Tranylcypromine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_5_Liver_HO_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 86 (Mouse_5_Liver_HO_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125647747-1877110 13A11_rep_A_Indatraline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125647747-1877110 13A11_rep_A_Indatraline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152126905-1868002 05A04_rep_C_Chlorpropamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152126905-1868002 05A04_rep_C_Chlorpropamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_B_pos_IMS1_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124845987-1876746 12H04_rep_C_(R)-(+)-Atenolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124845987-1876746 12H04_rep_C_(R)-(+)-Atenolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089385/ccms_peak/TOF_T3_pos_MS1/TOF_T3_Pos-JC-1058-37_01.mzML at line 689
Premature end of data in tag binary line 39224, line 39224, column 64629 (TOF_T3_Pos-JC-1058-37_01.mzML, line 39224)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125536025-1863014 03G01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125536025-1863014 03G01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152703008-1577029 Batch2_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152547574-1576966 Batch1_NCIH1838_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpD_#1_P4B5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (glpD_#1_P4B5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysG_P4A2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (cysG_P4A2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GH9_01_11570.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lhgO_P3B4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (lhgO_P3B4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/879.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/147-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_17091608_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223513427-1870162 01B08_rep_B_Levodopab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223513427-1870162 01B08_rep_B_Levodopab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_F6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/532-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000097739/peak/C15_2 MSMS pos.mzML at line 640
'selectedIonList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152951263-1577171 Batch3_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114736783-1875133 12G04_rep_B_Pralidoxime_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114736783-1875133 12G04_rep_B_Pralidoxime_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112243174-1921871 3_D3_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112243174-1921871 3_D3_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample084.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHJ03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH26.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/eamA_P3F5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (eamA_P3F5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115017282-1875263 12F03_rep_B_S(-)Eticlopride_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115017282-1875263 12F03_rep_B_S(-)Eticlopride_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123728047-1876243 08D08_rep_C_Temozolomideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123728047-1876243 08D08_rep_C_Temozolomideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_173.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_173.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A22_id_negative.mzML at line 21
index 256 is out of bounds for axis 0 with size 256
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD1_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121349921-1866912 04H08_rep_B_Guanethidine_sulfate_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121349921-1866912 04H08_rep_B_Guanethidine_sulfate_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101504027-1869486 07F03_rep_C_Grepafloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101504027-1869486 07F03_rep_C_Grepafloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180904_ES_H3K_batch1_repD_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190128130443.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glk_P4B2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (glk_P4B2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/864.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_46.mzXML at line 689
Premature end of data in tag peaks line 19555, line 19559, column 3655 (20121114_46.mzXML, line 19559)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F6_id.mzML at line 21
index 543 is out of bounds for axis 0 with size 543
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yejE_#4_P4B5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (yejE_#4_P4B5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_103a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124902484-1876758 12E04_rep_C_Xamoterol_hemifumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124902484-1876758 12E04_rep_C_Xamoterol_hemifumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GA9_01_12072.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114323937-1874936 12C08_rep_A_S-(+)-ibuprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114323937-1874936 12C08_rep_A_S-(+)-ibuprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/673.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125529832-1863009 03E02_rep_D_Ranitidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125529832-1863009 03E02_rep_D_Ranitidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_133_1B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ2_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ4_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113504142-1922478 2_B2_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113504142-1922478 2_B2_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-005_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yejF_#3_P4B4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (yejF_#3_P4B4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223440995-1870137 01B01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223440995-1870137 01B01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088261/raw/210916_tanaka09.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_C3_id_MSn_positive_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223039182-1869954 01G01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223039182-1869954 01G01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/znuA_#1_P4B10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (znuA_#1_P4B10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151254862-1924841 3_H1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151254862-1924841 3_H1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample227_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N14.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNB091_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223452441-1870146 01C04_rep_B_Sulfadiazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223452441-1870146 01C04_rep_B_Sulfadiazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisJ_#1_P4H7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (hisJ_#1_P4H7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ghrA_#1_P6B6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (ghrA_#1_P6B6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113651099-1874619 11E04_rep_C_Nafcillin_sodium_salt_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113651099-1874619 11E04_rep_C_Nafcillin_sodium_salt_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/air_purK_P3D5_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024912 (air_purK_P3D5_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100847896-1869186 07C04_rep_A_Cetirizine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100847896-1869186 07C04_rep_A_Cetirizine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150600965-1864874 02D10_rep_C_Picotamide monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150600965-1864874 02D10_rep_C_Picotamide monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1063.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1063.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113951465-1922728 3_C2_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113951465-1922728 3_C2_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GF7_01_16852.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpI_P4E12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (atpI_P4E12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample046.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150550843-1864866 02D07_rep_C_Naltrexone hydrochloride dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150550843-1864866 02D07_rep_C_Naltrexone hydrochloride dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case48_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case48_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153237364-1577301 Batch4_A427_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_B7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Serratia_proteamaculans_03.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_G11_id_negative.mzML at line 21
index 287 is out of bounds for axis 0 with size 287
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211005_LKM_beads_mb_HPL_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yihQ_#1_P5A12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (yihQ_#1_P5A12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151822182-1576608 Batch7_UACC257_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113041813-1874363 11F08_rep_B_(+)_-Levobunolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113041813-1874363 11F08_rep_B_(+)_-Levobunolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaF_P4G1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (paaF_P4G1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122536496-1879979 15F02_rep_C_Topotecanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122536496-1879979 15F02_rep_C_Topotecanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_76.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111925622-1921701 2_G1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111925622-1921701 2_G1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1769.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1769.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/162-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152148000-1576774 Batch2_MDAMB468_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123245020-1867810 05H02_rep_B_Terbutaline_hemisulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123245020-1867810 05H02_rep_B_Terbutaline_hemisulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150416111136.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_G10_id_positive.mzML at line 21
index 405 is out of bounds for axis 0 with size 405
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153040451-1577208 Batch3_BTFC905_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_72.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081754.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_214.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potH_P4B12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (potH_P4B12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_G6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_222.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124603419-1862554 03E01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124603419-1862554 03E01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121629046-1879562 15F09_rep_A_Telmisartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121629046-1879562 15F09_rep_A_Telmisartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_C8_id_positive.mzML at line 21
index 334 is out of bounds for axis 0 with size 334
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6G06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201918021-1882136 16E04_rep_D_Clopidogrelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201918021-1882136 16E04_rep_D_Clopidogrelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1B12_160525175453.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yjjG_P3F2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (yjjG_P3F2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2E09Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acrA_P3A5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (acrA_P3A5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/453.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202011627-1882178 16E01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202011627-1882178 16E01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_0124_190125091709.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201758879-1878074 09G05_rep_D_Bromopridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201758879-1878074 09G05_rep_D_Bromopridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151843817-1576626 Batch7_NCIH2444_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case181_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case181_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122956807-1875882 08C04_rep_A_Papaverine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122956807-1875882 08C04_rep_A_Papaverine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1K012.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007669_032118-1CRP1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cadB_P4D2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (cadB_P4D2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ1_4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_07_leg_muscle_control_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_07_leg_muscle_control_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151627651-1576513 Batch7_HCC38_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112751864-1874235 11G01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112751864-1874235 11G01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150415132404.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample042.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151323217-1576360 Batch7_SUM149PT_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124315900-1862305 03F10_rep_A_Ketoprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124315900-1862305 03F10_rep_A_Ketoprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G18_id_MSn_negative.mzML at line 21
index 357 is out of bounds for axis 0 with size 357
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH20.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111420374-1921054 1_H5_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111420374-1921054 1_H5_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_sample01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223142820-1870002 01G06_rep_B_Diphenhydramine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223142820-1870002 01G06_rep_B_Diphenhydramine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132917219-1733897 1fb Wound5D 2 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1E09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_C5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113136294-1922297 1_E9_IZH2_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113136294-1922297 1_E9_IZH2_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/035_CRa_H9M5_M470_C01_K2_low_neg.mzXML at line 689
Premature end of data in tag peaks line 29622, line 29626, column 15862 (035_CRa_H9M5_M470_C01_K2_low_neg.mzXML, line 29626)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/398.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A8_id_MSn_negative.mzML at line 21
index 222 is out of bounds for axis 0 with size 222
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control227_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control227_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112037776-1873024 10D06_rep_C_Piperacillin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112037776-1873024 10D06_rep_C_Piperacillin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152757117-1577074 Batch2_PC3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150542232-1924468 1_G3_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150542232-1924468 1_G3_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078551/ccms_peak/pseudoalteromonas_120713_OT59_70-30_MeOH-H2O_FT-IT_2.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130656326-1877580 13C04_rep_C_Dimaprit_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130656326-1877580 13C04_rep_C_Dimaprit_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124900220-1862695 03D10_rep_B_Prilocaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124900220-1862695 03D10_rep_B_Prilocaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153106167-1868445 06G09_rep_B_Neostigmine_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153106167-1868445 06G09_rep_B_Neostigmine_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/279.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092252426-1878756 14C08_rep_A_Ticarcillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092252426-1878756 14C08_rep_A_Ticarcillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B6_id_MSn_positive.mzML at line 21
index 679 is out of bounds for axis 0 with size 679
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_11_Liver_Ma_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 87 (Mouse_11_Liver_Ma_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_D4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086335/ccms_peak/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Brancos/MeOH_13213.mzML at line 689
Extra content at the end of the document, line 4124, column 1 (MeOH_13213.mzML, line 4124)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165805269-2227514 PAT45.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/accC_P4B3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (accC_P4B3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152420176-1868134 05A02_rep_D_Streptomycin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152420176-1868134 05A02_rep_D_Streptomycin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_B9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G3_id_MSn_positive.mzML at line 21
index 399 is out of bounds for axis 0 with size 399
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample189.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30086 - GI-16-079.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tnaA_P4F7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (tnaA_P4F7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/224.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GB7_01_16796.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151154080-1576286 Batch5_NCIH446_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_100.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_100.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OW4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113613850-1922538 2_F1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113613850-1922538 2_F1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_10_Liver_Ma_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 87 (Mouse_10_Liver_Ma_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150417225346.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d3_276_lipid__Neg_17Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 36231, column 1 (SysVirol_IFL001_Cal04RG_d3_276_lipid__Neg_17Sep13_13-07-01.mzXML, line 36231)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153234957-1577299 Batch5_OVCAR5_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rffH_#1_P6C8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (rffH_#1_P6C8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/005_Urea_Day17_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_C8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaG_P3F11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (paaG_P3F11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E21_id_MSn_positive.mzML at line 21
index 467 is out of bounds for axis 0 with size 467
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/001_Soil_WaterExtra_3_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_A12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_A2_160424174128.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/61-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224027134-1870403 01H04_rep_D_Sulindaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224027134-1870403 01H04_rep_D_Sulindaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_64.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1320.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1320.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172712147-1889924 Na.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083989/updates/2019-07-18_Tongchai_9989dd7a/raw/180323_PMA_TS_BM_W_12_B_neg.mzXML at line 689
Opening and ending tag mismatch: peaks line 5363 and scan, line 5383, column 12 (180323_PMA_TS_BM_W_12_B_neg.mzXML, line 5383)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD4_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151140619-1576275 Batch5_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151729549-1576565 Batch7_SKMEL2_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007687_032218-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152334195-1576858 Batch2_NCIH2122_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yghA_P3G7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (yghA_P3G7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_125.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145941620-1864101 02D03_rep_B_Metolazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145941620-1864101 02D03_rep_B_Metolazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3E12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170209_015ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/7b/508fe177a15d62495cceb8c7d80fef/input_file/SH9_20170209_015ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4C4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4C4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170127_069ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/56/ac7516a185b01b24db93c08d6f35c3/input_file/MMW6_20170127_069ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28022021_Batch02_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151243651-1576327 Batch5_NCIH446_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D8_id_negative.mzML at line 21
index 259 is out of bounds for axis 0 with size 259
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112603671-1874149 11G10_rep_A_Phthalylsulfathiazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112603671-1874149 11G10_rep_A_Phthalylsulfathiazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121748964-1879623 15A05_rep_B_Sulbactamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121748964-1879623 15A05_rep_B_Sulbactamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130147149-1877338 13G06_rep_B_Letrozoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130147149-1877338 13G06_rep_B_Letrozoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113625211-1874598 11E02_rep_C_Olanzapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113625211-1874598 11E02_rep_C_Olanzapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD1_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201435270-1877924 09F01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201435270-1877924 09F01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122201258-1879814 15G03_rep_C_Bosentana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122201258-1879814 15G03_rep_C_Bosentana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/474-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_066EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/2e/b4f795664ca0cc5ef3b6b8c8e39518/input_file/QC_20170207_066EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152919386-1577144 Batch3_ACHN_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/841.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112723446-1874212 11H02_rep_A_Iopamidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112723446-1874212 11H02_rep_A_Iopamidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNS606_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d1_292_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag peaks line 31751, line 31755, column 15852 (SysVirol_IFL001_1918_d1_292_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 31755)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ2_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH58.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D3_id_MSn_positive.mzML at line 21
index 683 is out of bounds for axis 0 with size 683
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A11_id_MSn_positive.mzML at line 21
index 672 is out of bounds for axis 0 with size 672
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124900899-1876757 12H02_rep_C_Crotamitonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124900899-1876757 12H02_rep_C_Crotamitonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_A12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_75.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_3_RESV_20uM_POS.mzXML at line 689
attributes construct error, line 38, column 82 (HepG2_3_RESV_20uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/setA_P3A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (setA_P3A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124634911-1862579 03H09_rep_B_Lomefloxacin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124634911-1862579 03H09_rep_B_Lomefloxacin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nirB_P4C7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (nirB_P4C7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.Tu6071_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E5_id_MSn_positive.mzML at line 21
index 690 is out of bounds for axis 0 with size 690
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD3_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150712747-1924546 2_B11_RGT2_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150712747-1924546 2_B11_RGT2_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122352836-1867387 04B04_rep_D_Norethindroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122352836-1867387 04B04_rep_D_Norethindroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113549817-1874570 11C04_rep_C_Sulfamonomethoxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113549817-1874570 11C04_rep_C_Sulfamonomethoxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_A10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_C4_id_positive.mzML at line 21
index 367 is out of bounds for axis 0 with size 367
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GB7_01_11839.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152311392-1868082 05H04_rep_D_Hemicholinium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152311392-1868082 05H04_rep_D_Hemicholinium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170209_021ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/1d/1533a71cf45f6d3bdd607ee8d22a6c/input_file/MMW3_20170209_021ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114412653-1874976 12E05_rep_A_Roliprama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114412653-1874976 12E05_rep_A_Roliprama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/ka viqqi/converted coba2/200609_sample_59.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202445801-1878392 10C11_rep_A_Mevalonic-D,_L_acid_lactonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202445801-1878392 10C11_rep_A_Mevalonic-D,_L_acid_lactonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nupC_#2_P5G9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (nupC_#2_P5G9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_L20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_11_AC+_20.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hB3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hB3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K9_id.mzML at line 21
index 484 is out of bounds for axis 0 with size 484
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125656547-1863079 03C06_rep_D_Aztreonamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125656547-1863079 03C06_rep_D_Aztreonamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_G4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113751259-1874667 11C07_rep_C_Oxalamine_citrate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113751259-1874667 11C07_rep_C_Oxalamine_citrate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130352380-1877435 13A01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130352380-1877435 13A01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151315998-1924859 3_A1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151315998-1924859 3_A1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151352922-1576385 Batch6_CALU1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202217903-1878275 10E03_rep_A_Sulfapyridineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202217903-1878275 10E03_rep_A_Sulfapyridineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM2Y009.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_120_2C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000097739/peak/QC MSMS neg.mzML at line 640
'selectedIonList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ2_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B9_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101855065-1869672 07B02_rep_D_Metixene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101855065-1869672 07B02_rep_D_Metixene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_165.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trxA_P4F7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (trxA_P4F7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112729624-1874217 11E10_rep_A_Clinafloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112729624-1874217 11E10_rep_A_Clinafloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnM_#1_P5E10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (phnM_#1_P5E10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122849556-1875829 08H02_rep_A_Alendronate_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122849556-1875829 08H02_rep_A_Alendronate_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150726841-1864940 02D06_rep_C_Haloperidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150726841-1864940 02D06_rep_C_Haloperidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112138637-1921815 2_H9_GAP1_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112138637-1921815 2_H9_GAP1_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/005_Urea_Day7_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/36-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170125_039EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/8b/ebc642e406e4866857b37c4d8320bc/input_file/MMW4_20170125_039EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/485-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Phenylobacterium_sp_WTHL16.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151341092-1576375 Batch7_NCIH1734_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/CVP_B_rep_1_B-D9_1_5671.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151222025-1576309 Batch5_NCIH2135_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123736929-1876250 08D09_rep_C_Xylazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123736929-1876250 08D09_rep_C_Xylazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092509631-1878863 14F09_rep_B_Sarafloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092509631-1878863 14F09_rep_B_Sarafloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222955729-1869922 01E04_rep_A_Betazole hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222955729-1869922 01E04_rep_A_Betazole hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201831793-1878099 09B11_rep_D_Avermectin_B1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201831793-1878099 09B11_rep_D_Avermectin_B1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp2/20180309173104473-1989052 skin 5db.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080949/ccms_peak/peaks/3samples_sampl2_NEG.mzXML at line 689
attributes construct error, line 41, column 77 (3samples_sampl2_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122844998-1880126 15F07_rep_D_Benztropine_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122844998-1880126 15F07_rep_D_Benztropine_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007510_031618-0.01Thr2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112125148-1873542 10H05_rep_C_Eucatropine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112125148-1873542 10H05_rep_C_Eucatropine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113554385-1922521 2_D2_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113554385-1922521 2_D2_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113247133-1922358 1_D11_IZH2_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113247133-1922358 1_D11_IZH2_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample29n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150631177-1924510 2_B10_RGT2_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150631177-1924510 2_B10_RGT2_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH39.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/850.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083395/peak/mzML/Fecal1_SPE_100ACN.mzML at line 689
Premature end of data in tag binary line 143847, line 143847, column 12180 (Fecal1_SPE_100ACN.mzML, line 143847)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180704_ES_H3K_batch9_repC_132.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201545223-1881972 16C10_rep_C_Ethoxzolamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201545223-1881972 16C10_rep_C_Ethoxzolamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113854257-1874718 11G07_rep_D_Azacytidine-5a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113854257-1874718 11G07_rep_D_Azacytidine-5a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092259/peak/Sample0006.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/291.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_C2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125053134-1876841 12G06_rep_C_Salmeterola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125053134-1876841 12G06_rep_C_Salmeterola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_91.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G5_id_negative.mzML at line 21
index 253 is out of bounds for axis 0 with size 253
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111912284-1921690 2_C9_GAP1_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111912284-1921690 2_C9_GAP1_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150152386-1864683 02B08_rep_B_Disulfiramb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150152386-1864683 02B08_rep_B_Disulfiramb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L3_id.mzML at line 21
index 546 is out of bounds for axis 0 with size 546
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-073_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151957070-1867929 05A08_rep_C_Cefoperazone_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151957070-1867929 05A08_rep_C_Cefoperazone_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123731849-1876246 08C08_rep_C_Cilostazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123731849-1876246 08C08_rep_C_Cilostazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample114.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O12_id_MSn_negative.mzML at line 21
index 293 is out of bounds for axis 0 with size 293
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_24.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_24.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120948823-1879262 14A09_rep_D_Piperacetazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120948823-1879262 14A09_rep_D_Piperacetazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control180_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control180_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101044557-1869279 07B08_rep_B_Vancomycin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101044557-1869279 07B08_rep_B_Vancomycin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121455577-1879492 15A02_rep_A_Buspirone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121455577-1879492 15A02_rep_A_Buspirone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122309761-1867352 04H01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122309761-1867352 04H01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112117384-1873055 10E08_rep_C_Guanadrel_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112117384-1873055 10E08_rep_C_Guanadrel_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210923_LKM_beads_timecourse_5min_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092715006-1878960 14B11_rep_B_Oxaprozina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092715006-1878960 14B11_rep_B_Oxaprozina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111549771-1921516 1_F2_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111549771-1921516 1_F2_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wecC_P3F12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (wecC_P3F12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151517268-1576454 Batch6_HCC1937_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/212.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control234_neg.mzXML at line 689
attributes construct error, line 37, column 73 (Control234_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E12_id_MSn_positive.mzML at line 21
index 712 is out of bounds for axis 0 with size 712
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/643.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_138.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_138.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rutF_P4A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (rutF_P4A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112430701-1874075 10E07_rep_D_Tinidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112430701-1874075 10E07_rep_D_Tinidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfC_P3E9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (hyfC_P3E9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112328453-1873640 10D02_rep_D_Terazosin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112328453-1873640 10D02_rep_D_Terazosin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114919580-1875216 12D11_rep_B_L(-)-vesamicol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114919580-1875216 12D11_rep_B_L(-)-vesamicol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152310425-1576839 Batch2_NCIH522_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122019459-1879737 15E04_rep_B_Aripiprazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122019459-1879737 15E04_rep_B_Aripiprazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180420_ES_H3K_batch6_repC_95.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gatD_#2_P4B9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (gatD_#2_P4B9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ7_1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092808450-1879001 14D11_rep_B_Methiazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092808450-1879001 14D11_rep_B_Methiazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I4_id.mzML at line 21
index 535 is out of bounds for axis 0 with size 535
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123823618-1876287 08A08_rep_C_Itraconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123823618-1876287 08A08_rep_C_Itraconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151144296-1924780 3_A8_SNF3_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151144296-1924780 3_A8_SNF3_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125414912-1862948 03G08_rep_D_Clemizole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125414912-1862948 03G08_rep_D_Clemizole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165838231-2227544 pooled.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated8hA2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated8hA2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG017A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate2/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G22_id_MSn_negative.mzML at line 21
index 342 is out of bounds for axis 0 with size 342
Error processing file: /data/datasets/server/MassIVE/MSV000084884/ccms_peak/w20_15366n.mzML at line 689
Premature end of data in tag spectrumList line 68, line 154967, column 1 (w20_15366n.mzML, line 154967)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092926283-1879063 14E06_rep_C_Topiramateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092926283-1879063 14E06_rep_C_Topiramateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD1_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125814401-1877177 13E10_rep_A_Pivampicillina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125814401-1877177 13E10_rep_A_Pivampicillina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw4_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/131-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD3_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151716069-1925058 4_B3_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151716069-1925058 4_B3_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124245845-1862281 03E05_rep_A_Flumequinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124245845-1862281 03E05_rep_A_Flumequinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223459037-1870151 01F05_rep_B_Mefenamic acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223459037-1870151 01F05_rep_B_Mefenamic acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD5_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/062_63.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009510_IBD200_E10_B6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample127.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152840699-1577111 Batch3_A549_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111354902-1871459 10F06_rep_B_Sulfamethazine_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111354902-1871459 10F06_rep_B_Sulfamethazine_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_RBC3_NEG.mzXML at line 689
attributes construct error, line 38, column 72 (Person4_RBC3_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/961.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123112398-1867736 05D10_rep_B_Dextromethorphan_hydrobromide_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123112398-1867736 05D10_rep_B_Dextromethorphan_hydrobromide_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123133878-1875959 08E11_rep_B_Hydroxychloroquine_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123133878-1875959 08E11_rep_B_Hydroxychloroquine_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yfgF_#1_P4G5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (yfgF_#1_P4G5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR23h2b.mzML at line 689
Opening and ending tag mismatch: scanWindowList line 34377 and spectrum, line 34408, column 20 (pBpumR23h2b.mzML, line 34408)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124303310-1876511 08G02_rep_D_Mizolastineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124303310-1876511 08G02_rep_D_Mizolastineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/006_Ammonia_Day2_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hC1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hC1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R124h2a.mzML at line 689
Opening and ending tag mismatch: binary line 135754 and spectrum, line 135783, column 20 (pBlichMO17R124h2a.mzML, line 135783)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210325_AD_46.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_96.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_24.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_24.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ispU_P3D1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (ispU_P3D1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_G12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152927708-1577151 Batch3_HT1376_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_E5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/corA_P3C12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (corA_P3C12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F2_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E15_id_MSn_positive.mzML at line 21
index 463 is out of bounds for axis 0 with size 463
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GE6_01_16963.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_QC_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122645663-1867527 05B04_rep_A_Zidovudine,_AZTb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122645663-1867527 05B04_rep_A_Zidovudine,_AZTb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124102958-1876414 08E02_rep_D_Tranilasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124102958-1876414 08E02_rep_D_Tranilasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1K003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2C12_160527185955.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D24_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3G05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_73.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095029/raw/DonahueData/MauiMCapitataBatch1/._47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR13h3a.mzML at line 689
Opening and ending tag mismatch: binary line 97342 and spectrum, line 97368, column 20 (pMIBSDR13h3a.mzML, line 97368)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnC_P4D4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (phnC_P4D4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_D7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170127_021ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/27/7f827fbb36d567e000c140e8a094c0/input_file/MMW5_20170127_021ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/33_D25062013T0326_1399CBU_01QC_D1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_15_40x_2022_1006_Michael_pos-0.0035.mzML at line 689
Premature end of data in tag binary line 2091, line 2091, column 942483 (1_15_40x_2022_1006_Michael_pos-0.0035.mzML, line 2091)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/106-4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121647335-1879576 15H04_rep_A_Formoterol_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121647335-1879576 15H04_rep_A_Formoterol_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HaCaT_1_RESV_200uM_NEG.mzXML at line 689
attributes construct error, line 38, column 83 (HaCaT_1_RESV_200uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person26_plasma_elder_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person26_plasma_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD4_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223245351-1870049 01H04_rep_B_Sulindaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223245351-1870049 01H04_rep_B_Sulindaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152149716-1868020 05F06_rep_C_Methiothepin_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152149716-1868020 05F06_rep_C_Methiothepin_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/zitB_P4H2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (zitB_P4H2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112254470-1921881 3_C10_GPR1_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112254470-1921881 3_C10_GPR1_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B24_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Honokiol_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_54.mzXML at line 689
Premature end of data in tag peaks line 19589, line 19593, column 3655 (20121114_54.mzXML, line 19593)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122707163-1867544 05E02_rep_A_Bambuterol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122707163-1867544 05E02_rep_A_Bambuterol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_dilute_190131230209.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narH_P3G5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (narH_P3G5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202154908-1878257 09A04_rep_D_Flunisolideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202154908-1878257 09A04_rep_D_Flunisolideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092835020-1879022 14B10_rep_B_Propoxycaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092835020-1879022 14B10_rep_B_Propoxycaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/004_1018_1_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202050474-1882208 16F01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202050474-1882208 16F01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124252087-1862286 03C02_rep_A_Ampyroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124252087-1862286 03C02_rep_A_Ampyroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132950933-1733924 1fb Skin 2 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122348837-1867384 04E09_rep_D_Spiperonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122348837-1867384 04E09_rep_D_Spiperonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1049.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091651300-1878472 13A10_rep_D_Darifenacin_hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091651300-1878472 13A10_rep_D_Darifenacin_hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100237985-1868891 06F02_rep_D_Alizapride_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100237985-1868891 06F02_rep_D_Alizapride_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O18_id_MSn_negative.mzML at line 21
index 372 is out of bounds for axis 0 with size 372
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130307076-1877400 13D10_rep_B_Proguanil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130307076-1877400 13D10_rep_B_Proguanil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-1-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113058219-1874375 11H05_rep_B_Theobromineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113058219-1874375 11H05_rep_B_Theobromineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124234329-1862272 03A10_rep_A_Hydralazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124234329-1862272 03A10_rep_A_Hydralazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control165_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control165_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150532770-1924460 1_G8_RGT2_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150532770-1924460 1_G8_RGT2_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/21_D24062013T2139_1399CBU_0004_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1D07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111803577-1921631 2_C1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111803577-1921631 2_C1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_181.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201413267-1881906 16A07_rep_C_Amlexanoxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201413267-1881906 16A07_rep_C_Amlexanoxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153949630-1577659 Batch7_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/476-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cobS_P3G12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (cobS_P3G12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E4_id_MSn_negative.mzML at line 21
index 329 is out of bounds for axis 0 with size 329
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007493_031618-Unst3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A17_id_MSn_negative.mzML at line 21
index 299 is out of bounds for axis 0 with size 299
Error processing file: /data/datasets/server/MassIVE/MSV000080030/ccms_peak/Forensic_study_80_volunteers/Forensic_Objects_mzXML/Forensic_Objects_plate_F_mzXML/.DS_Store at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180418_ES_H3K_batch6_repB_90.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153024976-1868414 06D09_rep_B_Doxorubicin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153024976-1868414 06D09_rep_B_Doxorubicin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112431993-1874076 10G03_rep_D_Podophyllotoxina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112431993-1874076 10G03_rep_D_Podophyllotoxina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_E5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control140_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control140_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202216372-1882275 16H09_rep_D_Brimonidine_L-Tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202216372-1882275 16H09_rep_D_Brimonidine_L-Tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD3_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092623036-1878920 14C11_rep_B_Vorinostata.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092623036-1878920 14C11_rep_B_Vorinostata.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122405581-1879909 15D08_rep_C_Olopatadine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122405581-1879909 15D08_rep_C_Olopatadine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/GNPS-Nudibranch/Data-MS2/Converted/200609A_sample_36.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/efeB_P3C7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (efeB_P3C7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_47_AC+_20.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F20_id_MSn_negative.mzML at line 21
index 286 is out of bounds for axis 0 with size 286
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-165_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202107327-1882221 16A04_rep_D_Trimebutinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202107327-1882221 16A04_rep_D_Trimebutinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153648843-1577507 Batch4_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/16_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111850990-1921672 2_H10_GAP1_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111850990-1921672 2_H10_GAP1_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170209_013ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/7c/f6ec6954b836d06be88f158316a82d/input_file/SH7_20170209_013ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ1_2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145600566-1863923 02G08_rep_A_Nicergolinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145600566-1863923 02G08_rep_A_Nicergolinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_008ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/0f/0258c8a4f7f0ff43b3805967accb54/input_file/QC_20170209_008ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E13_id_MSn_negative.mzML at line 21
index 342 is out of bounds for axis 0 with size 342
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/409.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200930249-1877701 09H07_rep_B_Pramoxine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200930249-1877701 09H07_rep_B_Pramoxine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201248764-1877846 09F02_rep_B_Tylosina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201248764-1877846 09F02_rep_B_Tylosina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125912611-1863193 04F11_rep_A_Diperodon_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125912611-1863193 04F11_rep_A_Diperodon_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151343454-1576377 Batch6_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202056962-1882213 16A11_rep_D_Troxipidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202056962-1882213 16A11_rep_D_Troxipidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD2_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/812.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092733/peak/170803_LP_EP_EPO120AGAR_pos.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.liv_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpTen1_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_02062001_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_E10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_E10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151249583-1576332 Batch5_HCC1187_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_C6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR33h3a.mzML at line 689
attributes construct error, line 243331, column 62 (pMIBSDR33h3a.mzML, line 243331)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/68-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate3/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaR_P4C8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (waaR_P4C8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121617691-1867025 04A04_rep_B_Bufexamacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121617691-1867025 04A04_rep_B_Bufexamacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_C7_id_positive.mzML at line 21
index 348 is out of bounds for axis 0 with size 348
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3C08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/445.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121514506-1879505 15A03_rep_A_Anastrozoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121514506-1879505 15A03_rep_A_Anastrozoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/745.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw2_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112914370-1874300 11G08_rep_A_Paromomycin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112914370-1874300 11G08_rep_A_Paromomycin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_07_743_m_prot_28_IMS_19Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_H2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/451.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113909307-1874730 11A02_rep_D_Carbinoxamine_maleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113909307-1874730 11A02_rep_D_Carbinoxamine_maleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145957507-1864114 02G08_rep_B_Nicergolineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145957507-1864114 02G08_rep_B_Nicergolineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/262.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample098_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlB1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlB1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/btuR_#1_P3H7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (btuR_#1_P3H7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152551726-1868204 05E09_rep_D_Bepridil_hydrochloride_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152551726-1868204 05E09_rep_D_Bepridil_hydrochloride_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_C3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glnH_#3_P4G6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (glnH_#3_P4G6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202105225-1878218 09C06_rep_D_Tetraethylenepentamine_pentahydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202105225-1878218 09C06_rep_D_Tetraethylenepentamine_pentahydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092320/raw/Synthetic auxins/Raw Spectrum Files/Experiment 2_pos centroid mzML/25 CS HM 24 HAT A.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000092320/raw/Synthetic auxins/Raw Spectrum Files/Experiment 2_pos centroid mzML/25 CS HM 24 HAT A.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_A10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201322301-1881868 16B10_rep_B_Felbamateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201322301-1881868 16B10_rep_B_Felbamateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150837404-1924619 2_D2_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150837404-1924619 2_D2_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_092a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122344417-1879893 15C09_rep_C_Cladribineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122344417-1879893 15C09_rep_C_Cladribineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201834489-1878101 09A08_rep_D_Rebamipideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201834489-1878101 09A08_rep_D_Rebamipideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ddpA_P3A3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ddpA_P3A3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHJ01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151847306-1576629 Batch7_NCIH1993_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078960/ccms_peak/Soce38-Hmix_SPL-6+5_RA1_01_20437.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0005_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0005_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111658459-1871600 10H05_rep_B_Eucatropine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111658459-1871600 10H05_rep_B_Eucatropine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d1_284_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 39385, column 1 (SysVirol_IFT001_Cal04RG_d1_284_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 39385)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_122.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153509328-1868636 06G05_rep_C_Quetiapine_hemifumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153509328-1868636 06G05_rep_C_Quetiapine_hemifumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_18_CNR_47.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_18_CNR_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200826598-1881648 16C07_rep_A_Avobenzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200826598-1881648 16C07_rep_A_Avobenzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/614.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151400009-1924897 4_B5_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151400009-1924897 4_B5_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A12_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/152-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ulaA_#2_P5F7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (ulaA_#2_P5F7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190328993-1889793 Nb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA17.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153729394-1868749 06E07_rep_C_Carteolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153729394-1868749 06E07_rep_C_Carteolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_QC9.mzXML at line 689
Premature end of data in tag peaks line 15928, line 15932, column 15850 (L_QC9.mzXML, line 15932)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_0126_190128133751.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092202316-1878716 14C01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092202316-1878716 14C01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_37_NOR_48.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_37_NOR_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092120326-1878683 14E02_rep_A_(S)-propranolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092120326-1878683 14E02_rep_A_(S)-propranolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_10_Blood_Ma_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 87 (Mouse_10_Blood_Ma_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD3_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2T4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2T4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_3_P_rep_1_B-A4_1_5636.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150833409-1864992 02H11_rep_D_Gentamicine sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150833409-1864992 02H11_rep_D_Gentamicine sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083351/ccms_peak/BAs Animals one group/Desktop/WirelessDiagnostics-C02MR6WTG086-20160515121338/UserDiagnosticReports/.Spotify Helper_2016-04-30-023021_Ninas-MacBook-Air-3.crash.plist at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152740388-1577060 Batch1_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D24_id_negative.mzML at line 21
index 241 is out of bounds for axis 0 with size 241
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F3_id_MSn_negative.mzML at line 21
index 346 is out of bounds for axis 0 with size 346
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122601352-1879998 15B08_rep_D_Carvedilola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122601352-1879998 15B08_rep_D_Carvedilola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3A01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125733998-1877146 13H08_rep_A_Zalcitabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125733998-1877146 13H08_rep_A_Zalcitabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/C24_I_ESI-.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_P_E3E3_AD_31Jan18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089570/ccms_peak/fabiansfd/Sample/GN-01-G.mzML at line 689
Specification mandates value for attribute accessigTDZ9rGZFGQPVC, line 469165, column 52 (GN-01-G.mzML, line 469165)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_H4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBmegR124h3a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123745667-1876257 08H03_rep_C_Dipivefrin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123745667-1876257 08H03_rep_C_Dipivefrin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_A8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151142067-1865139 02B09_rep_D_Acetylsalicylsalicylic acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151142067-1865139 02B09_rep_D_Acetylsalicylsalicylic acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152851170-1577120 Batch3_NCIH322M_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121627903-1867033 04A11_rep_B_Alprenolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121627903-1867033 04A11_rep_B_Alprenolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081042.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_L6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD3_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_06_361_prot_62_IMS_15Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151638308-1576522 Batch7_NCIH441_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/20_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223833808-1870316 01B05_rep_C_Sulfacetamide sodic hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223833808-1870316 01B05_rep_C_Sulfacetamide sodic hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113054869-1922261 1_E7_IZH2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113054869-1922261 1_E7_IZH2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frmA_P4E3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (frmA_P4E3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D17_id_MSn_positive.mzML at line 21
index 573 is out of bounds for axis 0 with size 573
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_137.mzXML at line 689
Premature end of data in tag peaks line 22718, line 22722, column 11844 (20121114_137.mzXML, line 22722)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092700510-1878949 14G06_rep_B_Verteporfinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092700510-1878949 14G06_rep_B_Verteporfinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124748806-1862638 03B09_rep_B_Mephenesina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124748806-1862638 03B09_rep_B_Mephenesina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdsA_#5_P3C12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (kdsA_#5_P3C12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201042003-1881748 16B07_rep_B_Tegafurb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201042003-1881748 16B07_rep_B_Tegafurb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/775.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113327895-1874494 11H10_rep_B_Rabeprazole_Sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113327895-1874494 11H10_rep_B_Rabeprazole_Sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123752039-1876262 08H10_rep_C_Etoricoxiba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123752039-1876262 08H10_rep_C_Etoricoxiba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122534974-1867470 05F05_rep_A_Methylergometrine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122534974-1867470 05F05_rep_A_Methylergometrine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case190_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case190_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mglC_P3D2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (mglC_P3D2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0024_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0024_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123734385-1876248 08G07_rep_C_Racecadotrila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123734385-1876248 08G07_rep_C_Racecadotrila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121605996-1879544 15F10_rep_A_Nalmefene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121605996-1879544 15F10_rep_A_Nalmefene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/767.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151036039-1924721 3_E8_SNF3_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151036039-1924721 3_E8_SNF3_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151230422-1576316 Batch5_NCIH2135_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101826182-1869649 07G11_rep_D_Parthenolidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101826182-1869649 07G11_rep_D_Parthenolidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153204335-1868490 06C10_rep_B_Valacyclovir_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153204335-1868490 06C10_rep_B_Valacyclovir_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202144290-1882250 16E08_rep_D_Pregabalinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202144290-1882250 16E08_rep_D_Pregabalinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151323217-1576360 Batch7_SUM149PT_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD4_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O6_id_MSn_positive.mzML at line 21
index 373 is out of bounds for axis 0 with size 373
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_C5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_C5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GD7_01_11969.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112435689-1874079 10A02_rep_D_Althiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112435689-1874079 10A02_rep_D_Althiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102026100-1869746 07E11_rep_D_Troloxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102026100-1869746 07E11_rep_D_Troloxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121625445-1867031 04C08_rep_B_Clotrimazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121625445-1867031 04C08_rep_B_Clotrimazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112842748-1874275 11B06_rep_A_Fosfosalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112842748-1874275 11B06_rep_A_Fosfosalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hcaE_P4C1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (hcaE_P4C1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G11_id.mzML at line 21
index 611 is out of bounds for axis 0 with size 611
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153856189-1577614 Batch7_EKVX_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170207_043EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/5c/941d5a623c75ff4b29792f7104c1bd/input_file/SH8_20170207_043EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150201427-1864690 02C04_rep_B_Cyproheptadine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150201427-1864690 02C04_rep_B_Cyproheptadine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111445088-1871498 10G03_rep_B_Podophyllotoxinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111445088-1871498 10G03_rep_B_Podophyllotoxinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F9_id_MSn_positive.mzML at line 21
index 439 is out of bounds for axis 0 with size 439
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123238506-1867805 05F07_rep_B_Clofazimineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123238506-1867805 05F07_rep_B_Clofazimineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_cell lysate/mzML/UDP3_Bai_noxyl_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_030ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/8d/73221b4d66b2b01015bac6ed0bf7c3/input_file/QC_20170209_030ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_0123_190123234748.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152720994-1577044 Batch2_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uxaA_P4G11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (uxaA_P4G11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153644107-1577503 Batch5_NCIH1792_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/speB_#5_P4C5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (speB_#5_P4C5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152742866-1868290 06F06_rep_A_Mebhydroline_1,5-naphtalenedisulfonatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152742866-1868290 06F06_rep_A_Mebhydroline_1,5-naphtalenedisulfonatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093059494-1879132 14D05_rep_C_Cyproterone_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093059494-1879132 14D05_rep_C_Cyproterone_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_10_leg_muscle_RESV_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_10_leg_muscle_RESV_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114239351-1874900 12F05_rep_A_Flucytosinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114239351-1874900 12F05_rep_A_Flucytosinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_sample12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/40_D25062013T0649_1399CBU_01QC_D2.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case14_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case14_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_C7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_A9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/5.2_ITA _VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_17121408_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122213719-1867307 04E07_rep_D_Perhexiline_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122213719-1867307 04E07_rep_D_Perhexiline_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR231_5h1a.mzML at line 689
Opening and ending tag mismatch: selectedIon line 21055 and binary, line 21056, column 560 (pMIBSDR231_5h1a.mzML, line 21056)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purN_P6G1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (purN_P6G1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_134.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150227763-1864710 02E03_rep_B_Amfepramone hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150227763-1864710 02E03_rep_B_Amfepramone hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike4_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_105.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12C13_Replicate1_Level1_MSMS_pos.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/60-4_idMsMs_25min_50eV_GE5_01_4258.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165730320-2227482 pooled.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125352224-1876976 12E07_rep_D_Idazoxan_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125352224-1876976 12E07_rep_D_Idazoxan_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2F09P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151848443-1576630 Batch7_M14_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202320795-1878325 10F11_rep_A_Cinoxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202320795-1878325 10F11_rep_A_Cinoxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_C_pos_IMS1_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S01_dilute_190201023803.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150802802-1924589 2_F9_RGT2_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150802802-1924589 2_F9_RGT2_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153834975-1577596 Batch7_MIAPACA2_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBsubR27_5h3a.mzML at line 88
Invalid base64-encoded string: number of data characters (6901) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/750.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/665.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_G11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_392.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_65.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112145583-1921821 3_D7_GPR1_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112145583-1921821 3_D7_GPR1_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091609/raw/GNPS Workshop Dataset/1110222_R2A_blank_DDA1.mzXML at line 689
error parsing attribute name, line 1799, column 6 (1110222_R2A_blank_DDA1.mzXML, line 1799)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_KP1032.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124210105-1876468 08A06_rep_D_Atropine_sulfate_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124210105-1876468 08A06_rep_D_Atropine_sulfate_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/005_Urea_Day11_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170127_037ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a4/a9fbad9a0f348605175ebb363bf628/input_file/MMW6_20170127_037ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_260.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152439697-1576910 Batch1_NCIH1437_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/modA_P4A5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (modA_P4A5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112445523-1874087 10C09_rep_D_Monensin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112445523-1874087 10C09_rep_D_Monensin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125911574-1877221 13A03_rep_A_Canrenonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125911574-1877221 13A03_rep_A_Canrenonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122342523-1867379 04A04_rep_D_Bufexamacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122342523-1867379 04A04_rep_D_Bufexamacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086486/ccms_peak/peak/sample/MSplate21_yiaA_b3562_C8_plateY_rep3_STANDARD_GEVI_1-26_1764.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (MSplate21_yiaA_b3562_C8_plateY_rep3_STANDARD_GEVI_1-26_1764.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/OVA1_40EV_RA8_01_22615.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124809855-1862655 03C08_rep_B_Catharanthineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124809855-1862655 03C08_rep_B_Catharanthineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_SERUM_V8_CAT.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_G2_id_positive.mzML at line 21
index 340 is out of bounds for axis 0 with size 340
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202159964-1878261 10G02_rep_A_Clobetasol_propionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202159964-1878261 10G02_rep_A_Clobetasol_propionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_60.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_Extracellular/mzML/Ex_Baicalein_1_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123241046-1867807 05C08_rep_B_Thioguanosineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123241046-1867807 05C08_rep_B_Thioguanosineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case174_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case174_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152437190-1576908 Batch2_NCIH2291_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_024ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e5/9dac90164b95e1eaa064c393721093/input_file/QC_20170127_024ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113701935-1922579 2_C4_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113701935-1922579 2_C4_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K22_id_MSn_negative.mzML at line 21
index 351 is out of bounds for axis 0 with size 351
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153822078-1577585 Batch6_K562_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/114.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/queF_#3_P3A2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (queF_#3_P3A2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151712608-1925055 4_D11_SNF3_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151712608-1925055 4_D11_SNF3_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uidB_P3C9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (uidB_P3C9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151852082-1576633 Batch7_M14_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151640614-1576524 Batch7_7860_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152312723-1868083 05H04_rep_D_Hemicholinium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152312723-1868083 05H04_rep_D_Hemicholinium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_131.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093156837-1879178 14B09_rep_C_Ondansetron_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093156837-1879178 14B09_rep_C_Ondansetron_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J21_id_MSn_positive.mzML at line 21
index 533 is out of bounds for axis 0 with size 533
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V5_EDTAk3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1213.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1213.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/27.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/173_134.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223903421-2227691 PAT37.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121751938-1867099 04E09_rep_C_Spiperoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121751938-1867099 04E09_rep_C_Spiperoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122822759-1875808 08H09_rep_A_Dexfenfluramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122822759-1875808 08H09_rep_A_Dexfenfluramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123037803-1867709 05H11_rep_B_Hesperidin_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123037803-1867709 05H11_rep_B_Hesperidin_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/COR2_50EV_RA1_01_22549.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ6_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_E8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081119/ccms_peak/Beers19_ms2ldaPLUS/NEGmode/Beer_multibeers_8_T10_NEG.mzXML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082335/raw/MA42.mzXML at line 689
Premature end of data in tag peaks line 1196, line 1196, column 95590 (MA42.mzXML, line 1196)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_A_5.mzXML at line 689
Premature end of data in tag peaks line 2058, line 2062, column 11754 (L_A_5.mzXML, line 2062)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153006708-1577184 Batch3_BTFC905_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092733/peak/170510_PMA_LP_EP_EPO120EBSU.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121354301-1866915 04D11_rep_B_Quinidine_hydrochloride_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121354301-1866915 04D11_rep_B_Quinidine_hydrochloride_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111730109-1871625 10C08_rep_B_Aprepitanta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111730109-1871625 10C08_rep_B_Aprepitanta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417172705.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_QC_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222854911-1869876 01C04_rep_A_Sulfadiazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222854911-1869876 01C04_rep_A_Sulfadiazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GG8_01_17227.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122954421-1867678 05C01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122954421-1867678 05C01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlich1001R131_5h2a.mzML at line 689
attributes construct error, line 17322, column 87 (pBlich1001R131_5h2a.mzML, line 17322)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122443367-1867428 04A03_rep_D_Flavoxate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122443367-1867428 04A03_rep_D_Flavoxate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD6_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132919735-1733899 1fb Skin 1 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/536-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112001010-1872610 10E07_rep_C_Tinidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112001010-1872610 10E07_rep_C_Tinidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD4_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190128165717.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/719.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152641748-1577011 Batch2_NCIH838_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_A19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD3_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121417145-1879463 15C06_rep_A_Celecoxibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121417145-1879463 15C06_rep_A_Celecoxibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130029640-1863256 04C03_rep_A_Triprolidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130029640-1863256 04C03_rep_A_Triprolidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_155.mzXML at line 689
Premature end of data in tag peaks line 24196, line 24200, column 11843 (20121114_155.mzXML, line 24200)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisP_#1_P4G12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (hisP_#1_P4G12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150451985-1924425 1_D4_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150451985-1924425 1_D4_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_115_1A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000091079/ccms_peak/NEG_23.mzML at line 689
Opening and ending tag mismatch: binary line 42527 and spectrum, line 42528, column 20 (NEG_23.mzML, line 42528)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C6_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-cc5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F12_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_58_NOR_52.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_58_NOR_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dgoK_#1_P4C11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (dgoK_#1_P4C11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_70_AC+_15.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101007304-1869249 07C08_rep_B_Sibutramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101007304-1869249 07C08_rep_B_Sibutramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153207873-1868493 06D02_rep_B_Pefloxacineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153207873-1868493 06D02_rep_B_Pefloxacineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case136_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case136_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125423368-1862955 03H11_rep_D_Proglumideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125423368-1862955 03H11_rep_D_Proglumideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_CABIN_sample11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_QC_22.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_QC_22.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125615896-1863046 03H05_rep_D_Chlorphensin_carbamatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125615896-1863046 03H05_rep_D_Chlorphensin_carbamatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lptF_#3_P5G7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (lptF_#3_P5G7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100547608-1869041 07G06_rep_A_Tetramisole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100547608-1869041 07G06_rep_A_Tetramisole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151326312-1924868 3_D7_SNF3_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151326312-1924868 3_D7_SNF3_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_71.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_B1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0006_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0006_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075186.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200811943-1881637 16F04_rep_A_Terbinafinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200811943-1881637 16F04_rep_A_Terbinafinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125542888-1877060 12B03_rep_D_Flubendazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125542888-1877060 12B03_rep_D_Flubendazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_E1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD2_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101115947-1869304 07C07_rep_B_Sisomicin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101115947-1869304 07C07_rep_B_Sisomicin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P22_id_MSn_positive.mzML at line 21
index 715 is out of bounds for axis 0 with size 715
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_60.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_E3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNQ149_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009457_IBD200_E7_B8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_79.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_79.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_16_Dorsal_skin_CMC_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_16_Dorsal_skin_CMC_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_17_Dorsal_skin_CMC_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_17_Dorsal_skin_CMC_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_F9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydcU_P3D3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (ydcU_P3D3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/848.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frc_#2_P4D7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (frc_#2_P4D7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_PDK_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/006_Ammonia_Day7_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114326791-1922920 4_F8_STE2_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114326791-1922920 4_F8_STE2_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_C9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/QC_mix.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125143196-1862825 03C02_rep_C_Ampyroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125143196-1862825 03C02_rep_C_Ampyroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092502316-1878857 14H10_rep_B_Clocortolone_pivalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092502316-1878857 14H10_rep_B_Clocortolone_pivalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120956463-1879268 14B10_rep_D_Propoxycaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120956463-1879268 14B10_rep_D_Propoxycaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ6_5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P14_id_MSn_negative.mzML at line 21
index 324 is out of bounds for axis 0 with size 324
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_sample09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB3A06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223244029-1870048 01E05_rep_B_Isoxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223244029-1870048 01E05_rep_B_Isoxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_C5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180910_ES_H3K_batch1_repC_13.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET53.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET53.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GA8_01_17016.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/16FEB2021 Column3_test_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_10_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample065_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000088830/raw/AFN13.mzXML at line 255
Error -3 while decompressing data: invalid stored block lengths
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152141821-1576769 Batch2_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/62-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_E10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153338982-1577351 Batch5_HDQP1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123545296-1876162 08E03_rep_C_Tizanidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123545296-1876162 08E03_rep_C_Tizanidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152948911-1577169 Batch5_NCIH3255_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S118.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S118.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150627285-1864894 02B07_rep_C_Guanabenz acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150627285-1864894 02B07_rep_C_Guanabenz acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111412758-1871473 10B10_rep_B_Levonordefrina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111412758-1871473 10B10_rep_B_Levonordefrina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_G12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007670_032118-1CRP1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F10_id_MSn_positive.mzML at line 21
index 500 is out of bounds for axis 0 with size 500
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112816568-1922164 4_H7_GPR1_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112816568-1922164 4_H7_GPR1_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/blank_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_79.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpMat1_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009650_IBD200_E19_A1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120922470-1879242 14F04_rep_D_Misoprostola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120922470-1879242 14F04_rep_D_Misoprostola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100513363-1869014 06H01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100513363-1869014 06H01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample203_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hD3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hD3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/CORN_AAD4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_133_3C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_22_CNR_53.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_22_CNR_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152034934-1576716 Batch1_NCIH1975_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD4_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_C10_id_negative.mzML at line 21
index 231 is out of bounds for axis 0 with size 231
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHD02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121413137-1879460 15F04_rep_A_Azithromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121413137-1879460 15F04_rep_A_Azithromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNS615_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112221140-1873586 10F05_rep_D_Fluocinonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112221140-1873586 10F05_rep_D_Fluocinonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD1_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121830642-1879655 15C09_rep_B_Cladribineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121830642-1879655 15C09_rep_B_Cladribineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093046672-1879122 14G04_rep_C_4-aminosalicylic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093046672-1879122 14G04_rep_C_4-aminosalicylic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F6_id_MSn_positive.mzML at line 21
index 432 is out of bounds for axis 0 with size 432
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltL_#1_P5G12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (gltL_#1_P5G12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_C8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ptsG_#1_P4D3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (ptsG_#1_P4D3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GG11_01_16990.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125915148-1863195 04H10_rep_A_Clofilium_tosylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125915148-1863195 04H10_rep_A_Clofilium_tosylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C19_id.mzML at line 21
index 576 is out of bounds for axis 0 with size 576
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223302735-1870062 01C09_rep_B_Ethambutol dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223302735-1870062 01C09_rep_B_Ethambutol dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113819682-1922647 3_G10_STE2_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113819682-1922647 3_G10_STE2_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223349731-1870098 01B03_rep_B_Benzonatateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223349731-1870098 01B03_rep_B_Benzonatateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpA_P3C6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (glpA_P3C6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224313004-1870532 01B09_rep_D_Idoxuridineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224313004-1870532 01B09_rep_D_Idoxuridineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114333714-1874944 12B11_rep_A_Methylatropine_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114333714-1874944 12B11_rep_A_Methylatropine_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mazG_P5F6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (mazG_P5F6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079466/peak/Adenocalymma imperatoris/AIS-POS.mgf at line 1048
'str' object cannot be interpreted as an integer
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG007A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124348223-1862331 03C09_rep_A_Pentolinium_bitartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124348223-1862331 03C09_rep_A_Pentolinium_bitartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ2_3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4C05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113048059-1922255 1_G11_IZH2_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113048059-1922255 1_G11_IZH2_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_LS276_2.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152814834-1577089 Batch3_PANC0327_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223814304-1870301 01B04_rep_C_Hydroflumethiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223814304-1870301 01B04_rep_C_Hydroflumethiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/006_CRa_H9M5_M470_H01_K1_high_pos.mzXML at line 689
Premature end of data in tag peaks line 17006, line 17010, column 32250 (006_CRa_H9M5_M470_H01_K1_high_pos.mzXML, line 17010)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/144-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150522122-1924451 1_H1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150522122-1924451 1_H1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8C11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.Tu6071_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220312_LKM_adipocytes_31C_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_10_P3A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (ctrl_10_P3A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2B05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/CPV_P_rep_3_B-F1_1_5554.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/LiLi-19d.mzXML at line 689
Premature end of data in tag peaks line 1651, line 1655, column 7673 (LiLi-19d.mzXML, line 1655)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2E03P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092620499-1878918 14E04_rep_B_Isosorbide_mononitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092620499-1878918 14E04_rep_B_Isosorbide_mononitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hybA_P3G11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (hybA_P3G11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201526704-1881959 16D11_rep_C_Phenprobamatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201526704-1881959 16D11_rep_C_Phenprobamatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114114774-1874831 11G09_rep_D_Acetaminophenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114114774-1874831 11G09_rep_D_Acetaminophenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130448283-1877479 13C01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130448283-1877479 13C01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_5_P_rep_4_B-A5_1_5637.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fdoI_P3A3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (fdoI_P3A3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/55-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125619140-1877088 12A11_rep_D_Esmolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125619140-1877088 12A11_rep_D_Esmolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/362.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130721489-1877600 13A09_rep_C_Decamethonium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130721489-1877600 13A09_rep_C_Decamethonium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD4_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD4_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_plasma_0h_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer4_plasma_0h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_E8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp2/20180309173112162-1989060 wound 5db.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124330735-1862317 03F09_rep_A_Fenbufena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124330735-1862317 03F09_rep_A_Fenbufena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_plasma_24h_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer2_plasma_24h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_C10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112637722-1874176 11E07_rep_A_Ethynylestradiol_3-methyl_ethera.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112637722-1874176 11E07_rep_A_Ethynylestradiol_3-methyl_ethera.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD3_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ahpF_P4B5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ahpF_P4B5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d1_294_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 27991, column 1 (SysVirol_IFT001_1918_d1_294_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 27991)
Error processing file: /data/datasets/server/MassIVE/MSV000082694/peak/ST000089/part2/rawdata-LC-QTOF-lipidomics/negative-mode/CSH_Pooled.mzXML at line 689
Extra content at the end of the document, line 68251, column 1 (CSH_Pooled.mzXML, line 68251)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person11_blood_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 100 (Person11_blood_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N19.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101131186-1869316 07B09_rep_B_Artemisininb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101131186-1869316 07B09_rep_B_Artemisininb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_138b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150229885-1924307 1_G7_RGT2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150229885-1924307 1_G7_RGT2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113245944-1874460 11H08_rep_B_Scopolamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113245944-1874460 11H08_rep_B_Scopolamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O11_id_negative.mzML at line 21
index 259 is out of bounds for axis 0 with size 259
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151354115-1576386 Batch6_RPMI8226_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201224378-1877828 09B09_rep_B_Suxibuzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201224378-1877828 09B09_rep_B_Suxibuzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30153 - GI-17-404.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case184_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case184_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150513991-1924444 1_D1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150513991-1924444 1_D1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sodA_#1_P5F3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (sodA_#1_P5F3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_80.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112358352-1921937 3_B3_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112358352-1921937 3_B3_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122910179-1880146 15C08_rep_D_Fludarabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122910179-1880146 15C08_rep_D_Fludarabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123316767-1867836 05F01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123316767-1867836 05F01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/accD_#3_P5E2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (accD_#3_P5E2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122658090-1867537 05F09_rep_A_Bezafibrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122658090-1867537 05F09_rep_A_Bezafibrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30242 - GI-17-567.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3G07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G13_id_MSn_positive.mzML at line 21
index 415 is out of bounds for axis 0 with size 415
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Blank_pesticide_Swabs_170403141756.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151515982-1576453 Batch7_KM12_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130316099-1877407 13E05_rep_B_Meptazinol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130316099-1877407 13E05_rep_B_Meptazinol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ4_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223228105-1870036 01B07_rep_B_Sulfathiazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223228105-1870036 01B07_rep_B_Sulfathiazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/599.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_20_Blood_EtOH_control_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_20_Blood_EtOH_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122137436-1879796 15C02_rep_C_Famciclovira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122137436-1879796 15C02_rep_C_Famciclovira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122903722-1880141 15A09_rep_D_Mepivacaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122903722-1880141 15A09_rep_D_Mepivacaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111826284-1921651 2_E9_GAP1_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111826284-1921651 2_E9_GAP1_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C14_id_MSn_negative.mzML at line 21
index 287 is out of bounds for axis 0 with size 287
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ5_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115025864-1875270 12H08_rep_B_Deoxycorticosteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115025864-1875270 12H08_rep_B_Deoxycorticosteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150914638-1865024 02B11_rep_D_Nocodazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150914638-1865024 02B11_rep_D_Nocodazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125824975-1863153 04E10_rep_A_Pyrilamine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125824975-1863153 04E10_rep_A_Pyrilamine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_4_B_rep_4_B-D7_1_5856.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1272.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1272.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124638520-1862582 03F01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124638520-1862582 03F01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc5 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike4_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/853.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210112_AD_64.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201150653-1881799 16H02_rep_B_Cisatracurium_besylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201150653-1881799 16H02_rep_B_Cisatracurium_besylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_56_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_56_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224048284-1870419 01C09_rep_D_Ethambutol dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224048284-1870419 01C09_rep_D_Ethambutol dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153405231-1868585 06G03_rep_B_Cefiximeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153405231-1868585 06G03_rep_B_Cefiximeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_10.mzXML at line 689
Premature end of data in tag peaks line 19385, line 19389, column 3655 (20121114_10.mzXML, line 19389)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151818607-1576605 Batch4_HS578T_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112840667-1922186 4_F7_GPR1_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112840667-1922186 4_F7_GPR1_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/375.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_E10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130858468-1877678 13G08_rep_C_Tocainide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130858468-1877678 13G08_rep_C_Tocainide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/870.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152314066-1868084 05B05_rep_D_Sulfisoxazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152314066-1868084 05B05_rep_D_Sulfisoxazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/716.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ppc_P5G10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ppc_P5G10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d1_294_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 34948, column 1 (SysVirol_IFT001_1918_d1_294_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 34948)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153330269-1577344 Batch4_NCIH1793_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121320559-1879420 15G03_rep_A_Bosentana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121320559-1879420 15G03_rep_A_Bosentana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-141_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/385.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112638887-1874177 11E07_rep_A_Ethynylestradiol_3-methyl_etherb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112638887-1874177 11E07_rep_A_Ethynylestradiol_3-methyl_etherb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152415793-1576891 Batch2_NCIH596_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_008ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a1/d8478fcc62b8b5f20c12be7771fcd4/input_file/QC_20170127_008ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ugpC_P4E3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ugpC_P4E3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151635948-1576520 Batch7_SF295_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5S005.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/196.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/001_Soil_WaterExtra_2_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fabD_#3_P5H11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (fabD_#3_P5H11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control227_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control227_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nanA_#2_P4G7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (nanA_#2_P4G7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dtpC_P3D7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (dtpC_P3D7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F1_id_MSn_negative.mzML at line 21
index 302 is out of bounds for axis 0 with size 302
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210923_LKM_beads_timecourse_10min_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ptsI_#4_P5D8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ptsI_#4_P5D8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089951/peak/MicroMASST_mzXML/13A_NEG.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150618019-1924499 2_D7_RGT2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150618019-1924499 2_D7_RGT2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G21_id_MSn_positive.mzML at line 21
index 660 is out of bounds for axis 0 with size 660
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/039_CRa_H9M5_M470_C03_K2_low_pos.mzXML at line 689
Premature end of data in tag peaks line 15106, line 15110, column 7671 (039_CRa_H9M5_M470_C03_K2_low_pos.mzXML, line 15110)
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Pos/P3.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151500546-1924949 4_E4_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151500546-1924949 4_E4_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O18_id.mzML at line 21
index 564 is out of bounds for axis 0 with size 564
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007627_032118-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_D1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180829_ES_H3K_batch11_repB_154.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153735760-1868754 06C07_rep_C_Buflomedil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153735760-1868754 06C07_rep_C_Buflomedil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/006_Ammonia_Day17_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNT372_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GA12_01_12075.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_rerun_D9_BD7_01_12039.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/261.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101219967-1869355 07B05_rep_B_Propylthiouracila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101219967-1869355 07B05_rep_B_Propylthiouracila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_210.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cdd_#5_P5F12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (cdd_#5_P5F12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P16_id.mzML at line 21
index 574 is out of bounds for axis 0 with size 574
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152448034-1868155 05D06_rep_D_Hycanthoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152448034-1868155 05D06_rep_D_Hycanthoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_19040322_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150255324-1864731 02B01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150255324-1864731 02B01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223750480-2227627 pooled.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223438325-1870135 01H05_rep_B_Amitryptiline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223438325-1870135 01H05_rep_B_Amitryptiline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153622522-1577485 Batch4_NCIH810_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_08_leg_muscle_control_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_08_leg_muscle_control_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123016207-1867694 05E05_rep_B_Metergolinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123016207-1867694 05E05_rep_B_Metergolinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113741132-1874659 11G05_rep_C_Methylhydantoin-5-(D)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113741132-1874659 11G05_rep_C_Methylhydantoin-5-(D)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085847/raw/andrem1/72_StdMix_9_Neg.mzML at line 689
Opening and ending tag mismatch: binaryDataArray line 2306 and spectrum, line 2334, column 20 (72_StdMix_9_Neg.mzML, line 2334)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112419559-1874066 10H11_rep_D_Amrinonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112419559-1874066 10H11_rep_D_Amrinonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145714098-1863982 02B01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145714098-1863982 02B01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD3_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009378_IBD200_E2_A9.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123908360-1876323 08E08_rep_C_Eburnamonine_(-)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123908360-1876323 08E08_rep_C_Eburnamonine_(-)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152922985-1577147 Batch3_HT1376_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121549386-1879531 15C08_rep_A_Fludarabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121549386-1879531 15C08_rep_A_Fludarabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202047934-1882206 16A09_rep_D_Enrofloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202047934-1882206 16A09_rep_D_Enrofloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/CPV_P_rep_3_B-E7_1_5866.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MSA16.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/005_1020_2_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130101801-1877303 13H11_rep_B_Pyrvinium_pamoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130101801-1877303 13H11_rep_B_Pyrvinium_pamoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092112561-1878677 14B10_rep_A_Propoxycaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092112561-1878677 14B10_rep_A_Propoxycaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153304298-1868537 06H05_rep_B_Fentiazacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153304298-1868537 06H05_rep_B_Fentiazacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124714121-1862610 03G03_rep_B_Antimycin_Aa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124714121-1862610 03G03_rep_B_Antimycin_Aa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201216_LKM_NoBeads_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151408823-1924905 4_C3_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151408823-1924905 4_C3_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111734610-1921606 1_C10_GAP1_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111734610-1921606 1_C10_GAP1_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124230735-1862269 03E09_rep_A_Trimethoprim_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124230735-1862269 03E09_rep_A_Trimethoprim_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/102-4_MsMs_25min_40eV_GE3_01_4126.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153831371-1577593 Batch6_NCIH526_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_85.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124524911-1876625 09D09_rep_A_Tazobactamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124524911-1876625 09D09_rep_A_Tazobactamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-104_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223902335-2227690 PAT37.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100903893-1869199 07G05_rep_A_Tobramycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100903893-1869199 07G05_rep_A_Tobramycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124903810-1862698 03H03_rep_B_Scopolamin-N-oxide_hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124903810-1862698 03H03_rep_B_Scopolamin-N-oxide_hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124830973-1876735 12B09_rep_C_Dioxybenzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124830973-1876735 12B09_rep_C_Dioxybenzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190117_ES_H3K_batch14_repA_209.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151135745-1865134 02A07_rep_D_Acyclovira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151135745-1865134 02A07_rep_D_Acyclovira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gudP_#1_P4D12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (gudP_#1_P4D12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125909199-1863190 04B03_rep_A_Diphenidol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125909199-1863190 04B03_rep_A_Diphenidol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ispB_#1_P4C6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (ispB_#1_P4C6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151158898-1576290 Batch5_SHP77_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202045278-1882204 16B01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202045278-1882204 16B01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170125_032EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/26/bda6564e8a60d8141e35b2319651db/input_file/MMW4_20170125_032EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_31_male_2022_1017_Michael_neg-0.0057.mzML at line 689
Premature end of data in tag binary line 23949, line 23949, column 1467932 (4_31_male_2022_1017_Michael_neg-0.0057.mzML, line 23949)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_E5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_3_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S47.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S47.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_10_blood_RESV_skin_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_10_blood_RESV_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7H07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_G3_id_positive.mzML at line 21
index 311 is out of bounds for axis 0 with size 311
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B08P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_355.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/184-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_162.mzXML at line 689
Premature end of data in tag peaks line 23227, line 23231, column 11843 (20121114_162.mzXML, line 23231)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_19073146_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124109232-1876419 08H06_rep_D_Aceclidine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124109232-1876419 08H06_rep_D_Aceclidine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097739/peak/C3_3 MSMS pos.mzML at line 640
'selectedIonList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121827390-1867127 04A05_rep_C_Glutethimide,_para-aminob.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121827390-1867127 04A05_rep_C_Glutethimide,_para-aminob.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydgI_P3F6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (ydgI_P3F6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152913518-1577139 Batch3_T24_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_Timedependent/mzML/B_15102011_D4_Neg_cent.mzML at line 689
Extra content at the end of the document, line 163734, column 1 (B_15102011_D4_Neg_cent.mzML, line 163734)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/amn_#1_P5G1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (amn_#1_P5G1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_B2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR124h2a.mzML at line 689
AttValue: " or ' expected, line 145382, column 115 (pMIBSDR124h2a.mzML, line 145382)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H1_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD2_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD2_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009743_IBD200_E20_A11.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152739131-1577059 Batch1_NCIH1299_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8H02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folE_P4F10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (folE_P4F10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152708972-1577034 Batch2_LOXIMVI_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1346.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1346.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092729058-1878971 14G10_rep_B_Rifabutinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092729058-1878971 14G10_rep_B_Rifabutinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-7d.mzXML at line 689
Premature end of data in tag msRun line 5, line 7376, column 1 (YnYn-7d.mzXML, line 7376)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151603936-1576493 Batch7_CAL51_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125637163-1863063 03F01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125637163-1863063 03F01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2G006.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_A_3.mzXML at line 689
Premature end of data in tag msRun line 5, line 2577, column 1 (L_A_3.mzXML, line 2577)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170207_017EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/2f/d6272bea2f0cd8ce7594bd2cfc1ac9/input_file/MMW5_20170207_017EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152729809-1868280 06H02_rep_A_Vatalaniba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152729809-1868280 06H02_rep_A_Vatalaniba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/172-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O12_id.mzML at line 21
index 551 is out of bounds for axis 0 with size 551
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223222600-1870032 01D08_rep_B_Pyrimethamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223222600-1870032 01D08_rep_B_Pyrimethamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122724177-1867558 05E11_rep_A_Benzbromaronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122724177-1867558 05E11_rep_A_Benzbromaronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007638_032118-0.01Thr4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_dilute_190201011458.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121948783-1867191 04B01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121948783-1867191 04B01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_36_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_36_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190123_ES_H3K_batch15_repA_55.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-025_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101555223-1869525 07A11_rep_C_Iobenguane_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101555223-1869525 07A11_rep_C_Iobenguane_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086486/ccms_peak/peak/sample/MSplate2_pgpA_b0418_D3_platePN_rep1_HEAT_GEI_0-758_240.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (MSplate2_pgpA_b0418_D3_platePN_rep1_HEAT_GEI_0-758_240.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_G7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tktB_P5F7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (tktB_P5F7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I1_id.mzML at line 21
index 572 is out of bounds for axis 0 with size 572
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/299.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MSB04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D6_id_MSn_negative.mzML at line 21
index 316 is out of bounds for axis 0 with size 316
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084275/peak/00106_protpa-T2.mzXML at line 689
Premature end of data in tag peaks line 14023, line 14023, column 52222 (00106_protpa-T2.mzXML, line 14023)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223640833-1870229 01D01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223640833-1870229 01D01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/grxA_#1_P4F9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (grxA_#1_P4F9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113522022-1874548 11B10_rep_C_Moxalactam_disodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113522022-1874548 11B10_rep_C_Moxalactam_disodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_228_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1346.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1346.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O7_id_MSn_negative.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113320610-1874488 11B11_rep_B_Aminophyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113320610-1874488 11B11_rep_B_Aminophyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091745870-1878515 13C02_rep_D_Nitrocaramiphen_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091745870-1878515 13C02_rep_D_Nitrocaramiphen_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125641922-1863067 03D10_rep_D_Prilocaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125641922-1863067 03D10_rep_D_Prilocaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121604930-1867015 04H04_rep_B_Trifluoperazine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121604930-1867015 04H04_rep_B_Trifluoperazine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person03_plasma_youth_POS.mzXML at line 689
attributes construct error, line 41, column 91 (Person03_plasma_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124715362-1862611 03G03_rep_B_Antimycin_Ab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124715362-1862611 03G03_rep_B_Antimycin_Ab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_14_P3A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024901 (ctrl_14_P3A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5B02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170209_019ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/02/233a7212b1b7d5322461311f59f900/input_file/SH9_20170209_019ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152632215-1577003 Batch2_NCIH292_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mscS_P3H6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (mscS_P3H6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151325599-1576362 Batch6_SR8714_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125746902-1877156 13F01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125746902-1877156 13F01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_16092759_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafTreatedB2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafTreatedB2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153410182-1868589 06E06_rep_B_Cyclobenzaprine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153410182-1868589 06E06_rep_B_Cyclobenzaprine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3B07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case10_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case10_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111832129-1921656 2_D7_GAP1_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111832129-1921656 2_D7_GAP1_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_P3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_33.mzXML at line 689
Premature end of data in tag peaks line 18790, line 18794, column 3655 (20121114_33.mzXML, line 18794)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample012.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2E08Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B18_id_MSn_negative.mzML at line 21
index 309 is out of bounds for axis 0 with size 309
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124856542-1862692 03B01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124856542-1862692 03B01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI5_1_8_1_877.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ09161404a.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123847000-1876306 08C04_rep_C_Papaverine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123847000-1876306 08C04_rep_C_Papaverine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/CORN_AAD3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_D5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GF3_01_12149.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152504126-1576930 Batch1_CALU6_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153052419-1577217 Batch3_MGHU3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_107.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_E4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125723918-1863102 03B01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125723918-1863102 03B01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30179 - GI-19-150.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200919568-1881687 16F02_rep_A_Irbesartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200919568-1881687 16F02_rep_A_Irbesartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L19_id.mzML at line 21
index 539 is out of bounds for axis 0 with size 539
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8B09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075395.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V2_EDTAk2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111416889-1871476 10C10_rep_B_Isoetharine_mesylate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111416889-1871476 10C10_rep_B_Isoetharine_mesylate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092328266-1878784 14A05_rep_A_Prednicarbatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092328266-1878784 14A05_rep_A_Prednicarbatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202152162-1882256 16A06_rep_D_Doxapram_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202152162-1882256 16A06_rep_D_Doxapram_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/327.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_A9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121658676-1867057 04H05_rep_B_Enalapril_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121658676-1867057 04H05_rep_B_Enalapril_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I2_id.mzML at line 21
index 541 is out of bounds for axis 0 with size 541
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample226.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_D4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_G7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_G7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B23_id_MSn_positive.mzML at line 21
index 406 is out of bounds for axis 0 with size 406
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/347.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092726519-1878969 14F10_rep_B_Nialamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092726519-1878969 14F10_rep_B_Nialamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092528765-1878878 14G05_rep_B_Clonixin_Lysinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092528765-1878878 14G05_rep_B_Clonixin_Lysinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl 1_P3A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (ctrl 1_P3A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHL23.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009460_IBD200_E7_A11.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_74.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_74.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdpF_P4C11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (kdpF_P4C11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130627494-1877557 13F07_rep_C_Moxonidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130627494-1877557 13F07_rep_C_Moxonidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152830789-1868327 06A06_rep_A_Pepstatin_Ab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152830789-1868327 06A06_rep_A_Pepstatin_Ab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_85.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/maeB_P3H10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (maeB_P3H10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_G4_id_negative.mzML at line 21
index 217 is out of bounds for axis 0 with size 217
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_67.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8G12_160605140140.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190108_ES_H3K_batch12_repA_182.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172645793-1889904 Na.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009409_20190702014745_IBD200_E4_B8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-001_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_C5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150425007-1924403 1_C2_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150425007-1924403 1_C2_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mscL_P3H9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (mscL_P3H9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_G6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O15_id_MSn_positive.mzML at line 21
index 740 is out of bounds for axis 0 with size 740
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_82.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C14_id_MSn_negative.mzML at line 21
index 304 is out of bounds for axis 0 with size 304
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113741759-1922614 3_B3_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113741759-1922614 3_B3_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152958359-1577177 Batch3_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNQ865_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-cc1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202138849-1878244 09D06_rep_D_Oxacillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202138849-1878244 09D06_rep_D_Oxacillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_11_Dorsal_skin_Ma_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 93 (Mouse_11_Dorsal_skin_Ma_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150819241-1864981 02H06_rep_D_Paclitaxelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150819241-1864981 02H06_rep_D_Paclitaxelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151219585-1576307 Batch5_NCIH1755_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124556305-1876648 09H10_rep_A_Cephalothin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124556305-1876648 09H10_rep_A_Cephalothin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B09Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/780.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180626_ES_H3K_bacth8_repB_119.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145901874-1864069 02A01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145901874-1864069 02A01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_FZB42.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007566_031718-5CRP1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201556628-1881981 16E05_rep_C_Benzoxiquinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201556628-1881981 16E05_rep_C_Benzoxiquinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125020070-1862759 03A08_rep_C_Riluzole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125020070-1862759 03A08_rep_C_Riluzole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123200261-1867774 05G04_rep_B_Nicardipine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123200261-1867774 05G04_rep_B_Nicardipine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152636716-1868239 06G05_rep_A_Quetiapine_hemifumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152636716-1868239 06G05_rep_A_Quetiapine_hemifumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125326320-1876956 12C01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125326320-1876956 12C01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124623794-1862570 03F04_rep_B_Fenspiride_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124623794-1862570 03F04_rep_B_Fenspiride_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ4_6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/979.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_G8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ1_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201839864-1878105 09G04_rep_D_Famprofazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201839864-1878105 09G04_rep_D_Famprofazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_182.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111810437-1872042 10B03_rep_C_Streptozotocina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111810437-1872042 10B03_rep_C_Streptozotocina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121941793-1879708 15E02_rep_B_Clofibratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121941793-1879708 15E02_rep_B_Clofibratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190123170908.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample184.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151723551-1576560 Batch7_SKMEL2_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ampH_#2_P4D3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (ampH_#2_P4D3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122827885-1875812 08F01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122827885-1875812 08F01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0028_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0028_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person24_plasma_elder_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person24_plasma_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/823.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K15_id_MSn_negative.mzML at line 21
index 352 is out of bounds for axis 0 with size 352
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ7_6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088261/raw/210916_tanaka05.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114942804-1875235 12H11_rep_B_Aminocaproic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114942804-1875235 12H11_rep_B_Aminocaproic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7F04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_13_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1045.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_E5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_125a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yicI_P4D9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (yicI_P4D9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/162-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_E5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124851461-1876750 12C06_rep_C_Urapidil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124851461-1876750 12C06_rep_C_Urapidil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mdtJ_P3E12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (mdtJ_P3E12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092319432-1878777 14E11_rep_A_Homosalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092319432-1878777 14E11_rep_A_Homosalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170127_022ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/38/3c092b6ecd4953d754669284119a58/input_file/MMW5_20170127_022ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rutG_P4B1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (rutG_P4B1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/luxS_P3H12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (luxS_P3H12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151231649-1576317 Batch5_NCIH2135_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100827819-1869170 07G11_rep_A_Parthenolideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100827819-1869170 07G11_rep_A_Parthenolideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD6_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_042EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/4d/3bc65c8045ec11c36483725e395b9d/input_file/QC_20170209_042EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_69.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glcB_#2_P4E2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (glcB_#2_P4E2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ1_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125725137-1877139 13D06_rep_A_Fluvoxamine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125725137-1877139 13D06_rep_A_Fluvoxamine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_B5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165656739-2227451 pooled.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1364.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1364.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EBM012B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092643477-1878936 14G04_rep_B_4-aminosalicylic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092643477-1878936 14G04_rep_B_4-aminosalicylic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM2AF.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/189_146.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151935226-1576669 Batch1A_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121855996-1879674 15F06_rep_B_Losartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121855996-1879674 15F06_rep_B_Losartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114405305-1922954 4_H7_STE2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114405305-1922954 4_H7_STE2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153211336-1577280 Batch5_NCIH23_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122105519-1867252 04D01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122105519-1867252 04D01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_23.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_23.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150752343-1864960 02B08_rep_D_Disulfirama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150752343-1864960 02B08_rep_D_Disulfirama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122631846-1880022 15C07_rep_D_Candesartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122631846-1880022 15C07_rep_D_Candesartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124620951-1876667 09A10_rep_A_Etanidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124620951-1876667 09A10_rep_A_Etanidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ4_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122548185-1879988 15D07_rep_D_Enoxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122548185-1879988 15D07_rep_D_Enoxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/060_62.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152844227-1577114 Batch3_SKLU1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224053491-1870423 01A03_rep_D_Allantoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224053491-1870423 01A03_rep_D_Allantoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/focA_P3D9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (focA_P3D9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152036155-1576717 Batch1_NCIH1975_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-052_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124028449-1876387 08F01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124028449-1876387 08F01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yjfF_#3_P4G9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (yjfF_#3_P4G9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw2_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151724728-1576561 Batch7_SKMEL2_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroF_P3F5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (aroF_P3F5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007614_032118-Unst2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GC11_01_16942.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124006936-1876370 08G01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124006936-1876370 08G01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101636712-1869559 07F08_rep_C_Piracetama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101636712-1869559 07F08_rep_C_Piracetama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHL03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224016106-1870395 01B04_rep_D_Hydroflumethiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224016106-1870395 01B04_rep_D_Hydroflumethiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_06_dorsal_skin_RESV_oral_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_06_dorsal_skin_RESV_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095538/raw/2mecdp_13C_CE10_msAG252_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024761 (2mecdp_13C_CE10_msAG252_Aquity_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122438395-1867424 04H06_rep_D_Minocycline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122438395-1867424 04H06_rep_D_Minocycline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165925627-2227588 PAT42.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_3_P_rep_4_B-D6_1_5540.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B5_id_MSn_negative.mzML at line 21
index 270 is out of bounds for axis 0 with size 270
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093047987-1879123 14G04_rep_C_4-aminosalicylic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093047987-1879123 14G04_rep_C_4-aminosalicylic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113943340-1922721 3_A11_STE2_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113943340-1922721 3_A11_STE2_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gss_P3G5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (gss_P3G5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/135-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113219906-1874439 11C08_rep_B_Propantheline_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113219906-1874439 11C08_rep_B_Propantheline_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153213867-1577282 Batch4_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151208859-1924801 3_D5_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151208859-1924801 3_D5_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113551073-1874571 11C04_rep_C_Sulfamonomethoxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113551073-1874571 11C04_rep_C_Sulfamonomethoxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_58_RIN_40.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_58_RIN_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150416111136.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample128.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_18092931_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_CABIN_sample12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201244044-1881839 16H10_rep_B_Desonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201244044-1881839 16H10_rep_B_Desonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD2_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_04_041_prot_22_IMS_8Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/918.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hA2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hA2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F6_id_MSn_positive.mzML at line 21
index 663 is out of bounds for axis 0 with size 663
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_G7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101245852-1869376 07E06_rep_B_Rifampicinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101245852-1869376 07E06_rep_B_Rifampicinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151232911-1576318 Batch5_NCIH446_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I4_id_MSn_positive.mzML at line 21
index 477 is out of bounds for axis 0 with size 477
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180822_ES_H3K_batch10_repB_140.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8E06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ3_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_095b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-7-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125620605-1877089 12F09_rep_D_Benserazide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125620605-1877089 12F09_rep_D_Benserazide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_A7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151309981-1576349 Batch7_SNB75_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202436899-1878385 10F05_rep_A_Fluocinonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202436899-1878385 10F05_rep_A_Fluocinonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223852738-1870331 01G11_rep_C_Tolnaftatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223852738-1870331 01G11_rep_C_Tolnaftatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E16_id_MSn_negative.mzML at line 21
index 284 is out of bounds for axis 0 with size 284
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tauC_P5C8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (tauC_P5C8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cusA_P3B11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (cusA_P3B11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/401.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222827901-1869856 01E03_rep_A_Moxisylyte hydrochorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222827901-1869856 01E03_rep_A_Moxisylyte hydrochorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/004_Nitrate_Day2_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170209_051ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/12/dc8da904c59a834758c00864443dcd/input_file/SH10_20170209_051ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A23_id_negative.mzML at line 21
index 263 is out of bounds for axis 0 with size 263
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/59-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113747992-1922619 3_G3_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113747992-1922619 3_G3_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152609430-1576984 Batch3_KP4_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/495-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H20_id_MSn_positive.mzML at line 21
index 501 is out of bounds for axis 0 with size 501
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124627129-1876672 09G09_rep_A_Benzethonium_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124627129-1876672 09G09_rep_A_Benzethonium_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4G04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/614.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2A09P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152257577-1576829 Batch2_NCIH460_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_G5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-2-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/16FEB2021 Column3_test_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121110143-1879323 14C09_rep_D_Thiethylperazine_dimalate_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121110143-1879323 14C09_rep_D_Thiethylperazine_dimalate_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_121a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glcF_P3A2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (glcF_P3A2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113419331-1922439 2_A4_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113419331-1922439 2_A4_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_H2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GC6_01_11954.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007727_032218-buffer ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H14_id_MSn_positive.mzML at line 21
index 659 is out of bounds for axis 0 with size 659
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H6_id_MSn_negative.mzML at line 21
index 309 is out of bounds for axis 0 with size 309
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/phom_thrC_P4F8_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024912 (phom_thrC_P4F8_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_rerun_GA6_01_11587.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J13_id_MSn_positive.mzML at line 21
index 343 is out of bounds for axis 0 with size 343
Error processing file: /data/datasets/server/MassIVE/MSV000080071/ccms_peak/Dataset 1/Positive3/NZ Lichen_P_2_lichen_05_F 1_BC1_01_25203.mzXML at line 689
Opening and ending tag mismatch: msRun line 3 and scan, line 13917, column 8 (NZ Lichen_P_2_lichen_05_F 1_BC1_01_25203.mzXML, line 13917)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152500608-1576927 Batch1_HCC1143_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_F9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1G01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125856269-1863179 04A01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125856269-1863179 04A01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150443549-1924418 1_H4_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150443549-1924418 1_H4_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_PB_2022_1003_Michael_leming_liver_neg-0.0064.mzML at line 689
Premature end of data in tag binary line 21186, line 21186, column 311713 (3_PB_2022_1003_Michael_leming_liver_neg-0.0064.mzML, line 21186)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100611126-1869060 07F09_rep_A_Phenindioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100611126-1869060 07F09_rep_A_Phenindioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200958535-1877722 09E10_rep_B_Butylscopolammonium_(n-)_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200958535-1877722 09E10_rep_B_Butylscopolammonium_(n-)_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GA6_01_16787.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_22.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_22.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092033037-1878647 14A08_rep_A_Piretanideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092033037-1878647 14A08_rep_A_Piretanideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_A3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_49.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152127999-1576758 Batch1A_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/088_81.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2T2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2T2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_133_3A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ddpX_P4G7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (ddpX_P4G7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223851034-2227680 PAT41.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_E3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152136728-1576765 Batch2_NCIH358_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisQ_#1_P4G10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (hisQ_#1_P4G10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113519220-1922491 2_E7_IZH2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113519220-1922491 2_E7_IZH2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112405609-1874055 10F04_rep_D_Norgestrel-(-)-Db.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112405609-1874055 10F04_rep_D_Norgestrel-(-)-Db.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.afg_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/002_Urea_Day4_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A10Bs10mm_black_P1-A-12_01_23063.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007697_032218-5CRP3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153347793-1577358 Batch5_HDQP1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201218_LKM_all_wash_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114441003-1874999 12G04_rep_A_Pralidoxime_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114441003-1874999 12G04_rep_A_Pralidoxime_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100925618-1869216 07B06_rep_A_Terconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100925618-1869216 07B06_rep_A_Terconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_114.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acnB_P3D11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (acnB_P3D11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153557278-1577464 Batch4_NCIH2342_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153231346-1577296 Batch4_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153846755-1577606 Batch6_OVCAR8_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6E04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_123.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130025973-1877277 13E06_rep_A_Apramycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130025973-1877277 13E06_rep_A_Apramycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153156870-1868484 06E01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153156870-1868484 06E01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132934430-1733911 1pool Wound5D 3 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130327329-1877416 13G11_rep_B_Torsemideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130327329-1877416 13G11_rep_B_Torsemideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/62-4_Ms_25min__GE2_01_4167.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C15_id_MSn_negative.mzML at line 21
index 273 is out of bounds for axis 0 with size 273
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/403.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD3_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165715123-2227468 PAT36.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151423249-1576410 Batch7_CORL23_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_91.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101625833-1869550 07G11_rep_C_Parthenolideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101625833-1869550 07G11_rep_C_Parthenolideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113952975-1874765 11D02_rep_D_Butacaineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113952975-1874765 11D02_rep_D_Butacaineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G09Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_blank_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124725450-1862619 03A11_rep_B_Phenelzine_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124725450-1862619 03A11_rep_B_Phenelzine_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD2_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152648205-1868248 06B07_rep_A_Bacampicillin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152648205-1868248 06B07_rep_A_Bacampicillin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145601867-1863924 02G08_rep_A_Nicergolineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145601867-1863924 02G08_rep_A_Nicergolineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nikB_P3D8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (nikB_P3D8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180503_ES_H3K_batch4_repA_49.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ6_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170127_023ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/50/8cd9f4aef5d760fd370b78d08eb12f/input_file/SH9_20170127_023ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123722904-1876239 08E02_rep_C_Tranilastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123722904-1876239 08E02_rep_C_Tranilastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_53_NOR_25.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_53_NOR_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-blank (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GD1_01_11961.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123115316-1875944 08D11_rep_A_Zopiclonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123115316-1875944 08D11_rep_A_Zopiclonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4G09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122014020-1867211 04B09_rep_C_Antazoline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122014020-1867211 04B09_rep_C_Antazoline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HaCaT_1_RESV_20uM_POS.mzXML at line 689
attributes construct error, line 38, column 82 (HaCaT_1_RESV_20uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_A10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/229.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/016_CRa_H9M5_M470_H01_K2_high_pos.mzXML at line 689
Premature end of data in tag peaks line 18944, line 18948, column 19957 (016_CRa_H9M5_M470_H01_K2_high_pos.mzXML, line 18948)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike5_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112131748-1873547 10H09_rep_C_Dienestrola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112131748-1873547 10H09_rep_C_Dienestrola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/751.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/085_80.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180628_ES_H3K_bacth8_repC_107.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNB091_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123816045-1876281 08C11_rep_C_Etretinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123816045-1876281 08C11_rep_C_Etretinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150717551-1924550 2_H1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150717551-1924550 2_H1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151405338-1576395 Batch6_CALU1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150523333-1924452 1_H1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150523333-1924452 1_H1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201016651-1877735 09H03_rep_B_Benzocaineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201016651-1877735 09H03_rep_B_Benzocaineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A12_id_MSn_negative.mzML at line 21
index 290 is out of bounds for axis 0 with size 290
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_blank_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_098b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample146.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102100029-1869774 07D01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102100029-1869774 07D01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_120.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/abgB_P4G2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (abgB_P4G2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113542234-1874564 11D05_rep_C_Novobiocin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113542234-1874564 11D05_rep_C_Novobiocin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094943/raw/MS2/Moustafa_B_1st.mzML at line 689
Premature end of data in tag indexedmzML line 2, line 27716, column 1 (Moustafa_B_1st.mzML, line 27716)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210313_LKM_mb_rapid_beads_40min_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET105.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET105.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152711330-1577036 Batch2_SW900_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kbaZ_P3C12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (kbaZ_P3C12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_19032112_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/953-A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153605697-1577471 Batch4_RT4_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P18_id_MSn_negative.mzML at line 21
index 330 is out of bounds for axis 0 with size 330
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150616726-1864886 02G06_rep_C_Chlortetracycline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150616726-1864886 02G06_rep_C_Chlortetracycline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xylA_P3A4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (xylA_P3A4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150417150706.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114243058-1874903 12A07_rep_A_Clioquinolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114243058-1874903 12A07_rep_A_Clioquinolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD6_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114008036-1922743 3_G8_STE2_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114008036-1922743 3_G8_STE2_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GG5_01_17224.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100730674-1869125 07C08_rep_A_Sibutramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100730674-1869125 07C08_rep_A_Sibutramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4C02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_145.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_145.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1105.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNQ149_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_N17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H22_id.mzML at line 21
index 571 is out of bounds for axis 0 with size 571
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2L002B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltX_#4_P4E8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (gltX_#4_P4E8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_G8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/zupT_#1_P5G5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (zupT_#1_P5G5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K10_id_negative.mzML at line 21
index 240 is out of bounds for axis 0 with size 240
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_Blood2_POS.mzXML at line 689
attributes construct error, line 38, column 74 (Person4_Blood2_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153445374-1868617 06E08_rep_C_Hydrocortisone_baseb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153445374-1868617 06E08_rep_C_Hydrocortisone_baseb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101832535-1869654 07E03_rep_D_Thiostreptonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101832535-1869654 07E03_rep_D_Thiostreptonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (31).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124339656-1876541 09D05_rep_A_Nalidixic_acid_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124339656-1876541 09D05_rep_A_Nalidixic_acid_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092026579-1878642 13B03_rep_D_THIP_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092026579-1878642 13B03_rep_D_THIP_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rbsA_#1_P5B5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (rbsA_#1_P5B5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130317356-1877408 13E05_rep_B_Meptazinol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130317356-1877408 13E05_rep_B_Meptazinol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHL08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092152589-1878708 14G03_rep_A_Fexofenadine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092152589-1878708 14G03_rep_A_Fexofenadine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113916658-1922697 3_E4_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113916658-1922697 3_E4_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/690.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153524589-1577437 Batch5_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125910325-1877220 13C01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125910325-1877220 13C01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_RBC_4h_POS.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer3_RBC_4h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201935972-1882150 16H06_rep_D_Valsartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201935972-1882150 16H06_rep_D_Valsartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125547288-1863023 03C01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125547288-1863023 03C01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112300846-1873618 10E05_rep_D_Furaltadone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112300846-1873618 10E05_rep_D_Furaltadone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample208.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_120.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trpB_#2_P5B5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (trpB_#2_P5B5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M4_id_MSn_positive.mzML at line 21
index 519 is out of bounds for axis 0 with size 519
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/389.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR231_5h3a.mzML at line 689
Specification mandates value for attribute cvRDlhyLQ7aKi0M, line 175035, column 35 (pBlateR231_5h3a.mzML, line 175035)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A4_id_MSn_positive_2uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L8_id_MSn_negative.mzML at line 21
index 348 is out of bounds for axis 0 with size 348
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125737008-1863113 04H08_rep_A_Guanethidine_sulfate_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125737008-1863113 04H08_rep_A_Guanethidine_sulfate_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/LiLi-16d.mzXML at line 689
Premature end of data in tag msRun line 5, line 1581, column 1 (LiLi-16d.mzXML, line 1581)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G7_id_MSn_positive.mzML at line 21
index 540 is out of bounds for axis 0 with size 540
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2D09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201024649-1881735 16D01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201024649-1881735 16D01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Buttiauxella_sp_MS2G05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130456035-1877485 13F07_rep_B_Moxonidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130456035-1877485 13F07_rep_B_Moxonidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_B6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case202_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case202_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ4_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8G03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/357.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101602701-1869531 07D03_rep_C_Iohexola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101602701-1869531 07D03_rep_C_Iohexola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/852.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_E6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H6_id_MSn_positive.mzML at line 21
index 688 is out of bounds for axis 0 with size 688
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087322/raw/DOM_Interlab_Lab6/POS_MSMS_mzML/DOM_Interlab-LCMS_Lab6_A_Pos_MS2_rep1.mzML at line 689
Premature end of data in tag spectrumList line 96, line 507958, column 1 (DOM_Interlab-LCMS_Lab6_A_Pos_MS2_rep1.mzML, line 507958)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122859639-1875837 08G10_rep_A_Aniracetamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122859639-1875837 08G10_rep_A_Aniracetamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5F06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123406420-1876082 08E03_rep_B_Tizanidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123406420-1876082 08E03_rep_B_Tizanidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_49_CNR_54.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_49_CNR_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG007C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ7_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_223.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD2_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/19072021_Batch07_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151425574-1576412 Batch7_CORL88_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151950830-1867924 05F03_rep_C_Debrisoquin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151950830-1867924 05F03_rep_C_Debrisoquin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007554_031618-1CRP4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152502913-1576929 Batch2_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_C9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153407196-1577374 Batch3_KNS62_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_G3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_G3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124549260-1862543 03D02_rep_B_Midodrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124549260-1862543 03D02_rep_B_Midodrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101751728-1869621 07G04_rep_D_Betahistine_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101751728-1869621 07G04_rep_D_Betahistine_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD3_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089260/peak/20190311_QC_DIL4-1_EI_HILICneg-08.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000089260/peak/20190311_QC_DIL4-1_EI_HILICneg-08.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/40_D25062013T0649_1399CBU_01QC_D2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/40.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB7A01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151437404-1576422 Batch6_MOLT4_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123344228-1876064 08C05_rep_B_Yohimbine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123344228-1876064 08C05_rep_B_Yohimbine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc2_T24_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083395/peak/mzML/Blank_20190131152933.mzML at line 689
Premature end of data in tag binary line 14960, line 14960, column 16651 (Blank_20190131152933.mzML, line 14960)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample170_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/blank_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHL06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_133_2A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_55.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114012357-1922747 3_A4_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114012357-1922747 3_A4_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR07/WithKBr/140429pEtDBABr.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122743925-1867574 05C10_rep_A_Ritodrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122743925-1867574 05C10_rep_A_Ritodrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ2_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153948481-1577658 Batch7_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201343424-1877886 09D03_rep_C_Sumatriptan_succinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201343424-1877886 09D03_rep_C_Sumatriptan_succinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111958510-1872608 10H06_rep_C_Isocarboxazidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111958510-1872608 10H06_rep_C_Isocarboxazidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F7_id_MSn_positive.mzML at line 21
index 605 is out of bounds for axis 0 with size 605
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B4_id_MSn_negative.mzML at line 21
index 278 is out of bounds for axis 0 with size 278
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_0123_190124011044.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201235307-1877836 09A03_rep_B_Gefitiniba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201235307-1877836 09A03_rep_B_Gefitiniba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124602772-1876653 09C09_rep_A_Acitretinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124602772-1876653 09C09_rep_A_Acitretinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_A12_id_positive.mzML at line 21
index 320 is out of bounds for axis 0 with size 320
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_C7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122035164-1867228 04G04_rep_C_Telenzepine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122035164-1867228 04G04_rep_C_Telenzepine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101802590-1869630 07H07_rep_D_Mirtazapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101802590-1869630 07H07_rep_D_Mirtazapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/selD_#1_P3G11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (selD_#1_P3G11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165726966-2227479 PAT36.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112748138-1874232 11C05_rep_A_Benzthiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112748138-1874232 11C05_rep_A_Benzthiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124753852-1862642 03A09_rep_B_Nitrofurantoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124753852-1862642 03A09_rep_B_Nitrofurantoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152327931-1576853 Batch2_NCIH226_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150628625-1864895 02B07_rep_C_Guanabenz acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150628625-1864895 02B07_rep_C_Guanabenz acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K11_id_MSn_positive.mzML at line 21
index 388 is out of bounds for axis 0 with size 388
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150415154224.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/asd_P4E8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (asd_P4E8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gabD_P4F8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (gabD_P4F8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007535_031618-1Thr4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122807986-1867594 05A04_rep_A_Chlorpropamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122807986-1867594 05A04_rep_A_Chlorpropamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2C03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153545315-1577454 Batch4_SKOV3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std b 010a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/blank_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR27_5h1a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 42570, column 143 (pBlateR27_5h1a.mzML, line 42570)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/moeB_#1_P4F1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (moeB_#1_P4F1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mpaA_#1_P4E7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (mpaA_#1_P4E7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202138298-1882245 16F11_rep_D_Ritonavira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202138298-1882245 16F11_rep_D_Ritonavira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_106.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084884/ccms_peak/w50_zob.mzML at line 689
Premature end of data in tag spectrumList line 68, line 171371, column 1 (w50_zob.mzML, line 171371)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152820811-1577094 Batch3_PANC0327_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_024ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/7d/9864d7000f28f85d96ca8fb270d42f/input_file/QC_20170127_024ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_4_P_rep_4_B-A6_1_5638.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124923925-1862714 03D11_rep_B_Camptothecine_(S,+)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124923925-1862714 03D11_rep_B_Camptothecine_(S,+)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNT302_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190323914-1889789 NNb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/664.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1453.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1453.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sdaA_#2_P5F5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (sdaA_#2_P5F5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_117.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_117.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1512.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1512.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/144_116.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ5_7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gpmM_P3A8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (gpmM_P3A8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD1_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F11_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153203781-1577274 Batch4_NCIH1869_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150633455-1924512 2_B7_RGT2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150633455-1924512 2_B7_RGT2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202552407-1878444 10B01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202552407-1878444 10B01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130832177-1877657 13E02_rep_C_Alfadolone_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130832177-1877657 13E02_rep_C_Alfadolone_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD3_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/839.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_E6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_E6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ddlB_P3A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (ddlB_P3A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD4_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xylF_P3D5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (xylF_P3D5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153047032-1868430 06C07_rep_B_Buflomedil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153047032-1868430 06C07_rep_B_Buflomedil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS310Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ftsW_#2_P4B4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (ftsW_#2_P4B4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100942377-1869229 07E04_rep_B_Miglitola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100942377-1869229 07E04_rep_B_Miglitola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123857086-1876314 08F09_rep_C_Acipimoxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123857086-1876314 08F09_rep_C_Acipimoxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/217.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_G6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample125.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151149453-1576282 Batch5_LUDLU1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES387.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample178_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/idnT_P5G5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (idnT_P5G5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_010ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/0c/fe851304b5a1ffa68178066c397d92/input_file/QC_20170209_010ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150304895-1864738 02G09_rep_B_Canrenoic acid potassium salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150304895-1864738 02G09_rep_B_Canrenoic acid potassium salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ygiN_P3D11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (ygiN_P3D11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/002_Urea_Day0_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_A3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101611618-1869538 07G02_rep_C_Ciclopirox_ethanolamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101611618-1869538 07G02_rep_C_Ciclopirox_ethanolamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1201.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1201.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.liv_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/314.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223636920-1870226 01F02_rep_C_Mupirocinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223636920-1870226 01F02_rep_C_Mupirocinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/936-sma.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121411839-1879459 15E11_rep_A_Tulobuterolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121411839-1879459 15E11_rep_A_Tulobuterolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_C11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L14_id_MSn_positive.mzML at line 21
index 657 is out of bounds for axis 0 with size 657
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_dilute.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/Alb-PDI-plasma-6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121959132-1867199 04C02_rep_C_Ethisteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121959132-1867199 04C02_rep_C_Ethisteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/18_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092619202-1878917 14G08_rep_B_Ramiprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092619202-1878917 14G08_rep_B_Ramiprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094756/peak/02_TO_mLiver_Pel_C18_neg.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD4_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123144048-1867761 05H06_rep_B_Amikacin_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123144048-1867761 05H06_rep_B_Amikacin_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090213/raw/9March2022_003_VH LV Trang 10x_neg .mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152102053-1867982 05D08_rep_C_Amoxicillina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152102053-1867982 05D08_rep_C_Amoxicillina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_M18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G9_id_MSn_negative.mzML at line 21
index 307 is out of bounds for axis 0 with size 307
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101929707-1869700 07D07_rep_D_Lovastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101929707-1869700 07D07_rep_D_Lovastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153244796-1577307 Batch4_SW780_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153737012-1868755 06C07_rep_C_Buflomedil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153737012-1868755 06C07_rep_C_Buflomedil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD3_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151132792-1924770 3_E1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151132792-1924770 3_E1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD3_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_182.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_182.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/308.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_116.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/648.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gmr_P5B2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (gmr_P5B2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153050866-1868433 06B06_rep_B_Modafinilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153050866-1868433 06B06_rep_B_Modafinilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/006_Ammonia_Day7_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153041726-1577209 Batch3_BTFC905_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlD1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraControlD1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0014_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0014_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153125138-1577243 Batch3_SU8686_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1423.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1423.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/663.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A6_id_MSn_negative.mzML at line 21
index 206 is out of bounds for axis 0 with size 206
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223822297-1870307 01D03_rep_C_Epirizolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223822297-1870307 01D03_rep_C_Epirizolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152534658-1868191 05C05_rep_D_Clorgyline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152534658-1868191 05C05_rep_D_Clorgyline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mmuM_#3_P4C10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (mmuM_#3_P4C10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201509747-1881948 16F04_rep_C_Terbinafineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201509747-1881948 16F04_rep_C_Terbinafineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100225583-1868881 06G05_rep_D_Quetiapine_hemifumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100225583-1868881 06G05_rep_D_Quetiapine_hemifumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD4_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_5_B_rep_4_B-F3_1_5556.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_rerun_BD1_01_11595.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample192_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_04_524_prot_13_IMS_11Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2J007.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/LiLi-12d.mzXML at line 689
Premature end of data in tag msRun line 5, line 1486, column 1 (LiLi-12d.mzXML, line 1486)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123051725-1875925 08D10_rep_A_Celiprolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123051725-1875925 08D10_rep_A_Celiprolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_147.mzXML at line 689
Premature end of data in tag peaks line 22377, line 22381, column 7748 (20121114_147.mzXML, line 22381)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123546452-1876163 08E03_rep_C_Tizanidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123546452-1876163 08E03_rep_C_Tizanidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124703990-1876701 09A03_rep_A_Gefitinibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124703990-1876701 09A03_rep_A_Gefitinibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1790.mzML at line 689
AttValue: " or ' expected, line 196186, column 59 (04_05_2012_1790.mzML, line 196186)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_H1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ycdT_P5H3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (ycdT_P5H3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_V12_039_prot_05_IMS_9Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNQ329_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201846249-1882111 16C08_rep_D_Algestone_acetophenidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201846249-1882111 16C08_rep_D_Algestone_acetophenidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151228384-1924818 3_D1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151228384-1924818 3_D1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130644043-1877570 13C10_rep_C_Chlormadinone_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130644043-1877570 13C10_rep_C_Chlormadinone_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_C_pos_IMS1_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153633213-1577494 Batch4_ASPC1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_med (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/925.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/280.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8G08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3D09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/251.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121443687-1866952 04A02_rep_B_Mexiletine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121443687-1866952 04A02_rep_B_Mexiletine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092330854-1878786 14H09_rep_A_Cefepime_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092330854-1878786 14H09_rep_A_Cefepime_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/545-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152450950-1576919 Batch2_IGROV1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-023.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-023.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223835074-1870317 01F04_rep_C_Triflupromazine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223835074-1870317 01F04_rep_C_Triflupromazine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ5_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152527042-1576949 Batch1_NCIH1838_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MSB13B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_E7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GE10_01_16893.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person08_RBC_elder_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Person08_RBC_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_A11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153518195-1868643 06G11_rep_C_Ceforanideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153518195-1868643 06G11_rep_C_Ceforanideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_G5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2C04Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-7-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR224h3a.mzML at line 689
Opening and ending tag mismatch: binary line 22732 and binaryDataArray, line 22734, column 31 (pBlateR224h3a.mzML, line 22734)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202419404-1878371 10B04_rep_A_Metoprolol-(+,-)_(+)-tartrate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202419404-1878371 10B04_rep_A_Metoprolol-(+,-)_(+)-tartrate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ugpE_#3_P4C7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ugpE_#3_P4C7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124419669-1876574 09C11_rep_A_Irsogladine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124419669-1876574 09C11_rep_A_Irsogladine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_F2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092631649-1878927 14D02_rep_B_Imidureab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092631649-1878927 14D02_rep_B_Imidureab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM2AF.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_A8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample112_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S68.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S68.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/449.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltP_P3H11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (gltP_P3H11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Citrobacter_braakii_EB1I002A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091822089-1878544 13D05_rep_D_Cyclopenthiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091822089-1878544 13D05_rep_D_Cyclopenthiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_H6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153435524-1577397 Batch4_SW156_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_BE7_01_17270.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD5_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153647618-1577506 Batch4_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample011_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4H01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223946008-1870372 01E05_rep_C_Isoxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223946008-1870372 01E05_rep_C_Isoxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122343681-1867380 04G09_rep_D_Pimozidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122343681-1867380 04G09_rep_D_Pimozidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case83_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case83_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150957362-1924688 3_E4_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150957362-1924688 3_E4_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Blank_pesticide_170404093137.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_59.mzXML at line 689
Premature end of data in tag msRun line 5, line 18167, column 1 (20121114_59.mzXML, line 18167)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD3_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_P9_id_MSn_negative.mzML at line 21
index 354 is out of bounds for axis 0 with size 354
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/acg5sa_argD_P5F12_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (acg5sa_argD_P5F12_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111432431-1921064 1_C5_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111432431-1921064 1_C5_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130608455-1877542 13H07_rep_C_Alcuronium_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130608455-1877542 13H07_rep_C_Alcuronium_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_E3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223420054-1870121 01D06_rep_B_Dapsonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223420054-1870121 01D06_rep_B_Dapsonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H9_id_MSn_positive.mzML at line 21
index 622 is out of bounds for axis 0 with size 622
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111626921-1921548 1_E3_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111626921-1921548 1_E3_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ4_2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111923402-1921699 2_F11_GAP1_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111923402-1921699 2_F11_GAP1_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30109 - GI-14-466.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample132_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample211_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arnT_P3F4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (arnT_P3F4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S27.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S27.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_254.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092153/peak/Sample0006.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114233241-1922872 4_B3_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114233241-1922872 4_B3_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_70.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/656.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111638686-1921558 1_G4_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111638686-1921558 1_G4_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GE9_01_11521.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112255894-1873614 10F08_rep_D_Alexidine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112255894-1873614 10F08_rep_D_Alexidine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysA_P5C8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (cysA_P5C8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092917302-1879056 14B04_rep_C_Pivmecillinam_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092917302-1879056 14B04_rep_C_Pivmecillinam_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150443927-1864814 02F04_rep_C_Hydroxyzine dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150443927-1864814 02F04_rep_C_Hydroxyzine dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091920775-1878591 13B08_rep_D_Zardaverineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091920775-1878591 13B08_rep_D_Zardaverineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114817041-1875165 12B01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114817041-1875165 12B01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180505_ES_H3K_batch4_repC_56.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124353295-1862335 03H08_rep_A_Ofloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124353295-1862335 03H08_rep_A_Ofloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_1_RESV_0uM_NEG.mzXML at line 689
attributes construct error, line 38, column 81 (C2C12_1_RESV_0uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-104_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/17_D24062013T1944_1399CBU_0011_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153326893-1868555 06G04_rep_B_Metrizamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153326893-1868555 06G04_rep_B_Metrizamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD4_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007691_032218-5CRP1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frc_#2_P4D7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (frc_#2_P4D7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_2_RESV_20uM_POS.mzXML at line 689
attributes construct error, line 38, column 82 (C2C12_2_RESV_20uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/BeautyProducts_Vol4/BP5_01_17295.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_094a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153649765-1868717 06H08_rep_C_Progesteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153649765-1868717 06H08_rep_C_Progesteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210324_AD_47.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151112777-1865116 02C06_rep_D_Danazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151112777-1865116 02C06_rep_D_Danazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdpC_P3C7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (kdpC_P3C7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088017/ccms_peak/12304-gsnor1-15_Treffon-004.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122759678-1875790 08H06_rep_A_Aceclidine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122759678-1875790 08H06_rep_A_Aceclidine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153304232-1577323 Batch4_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD5_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007496_031618-Unst4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES392_2.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153012433-1577188 Batch3_MGHU3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223910559-1870345 01E03_rep_C_Moxisylyte hydrochoridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223910559-1870345 01E03_rep_C_Moxisylyte hydrochoridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_012ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/56/c9b5de4f87c2ba0045c5bcdab4cd60/input_file/QC_20170127_012ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101237151-1869369 07D06_rep_B_Trimethadionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101237151-1869369 07D06_rep_B_Trimethadionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152058772-1576735 Batch1_NCIH1975_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_A10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_61.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metN_P3H9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (metN_P3H9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 2-30190 - GI-16-739.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112342371-1921923 3_E1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112342371-1921923 3_E1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130722766-1877601 13B03_rep_C_THIP_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130722766-1877601 13B03_rep_C_THIP_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atoE_P3H5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (atoE_P3H5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR324h1b.mzML at line 88
Invalid base64-encoded string: number of data characters (4453) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d1_294_lipid__Neg_17Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 35196, column 1 (SysVirol_IFL001_1918_d1_294_lipid__Neg_17Sep13_13-07-01.mzXML, line 35196)
Error processing file: /data/datasets/server/MassIVE/MSV000080705/ccms_peak/RAW/SILAC 2h.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNY228_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD5_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222922411-1869897 01F07_rep_A_Sulpiridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222922411-1869897 01F07_rep_A_Sulpiridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152357790-1868117 05F06_rep_D_Methiothepin_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152357790-1868117 05F06_rep_D_Methiothepin_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_65.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124530442-1876629 09F01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124530442-1876629 09F01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control109_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control109_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150417100001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150541635-1864859 02G08_rep_C_Nicergolineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150541635-1864859 02G08_rep_C_Nicergolineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/4ppan_dfp_P3D1_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (4ppan_dfp_P3D1_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190125034452.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_E5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_3mM_L_AC_AS_Neg.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_3mM_L_AC_AS_Neg.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_G2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_120_1B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152720994-1577044 Batch2_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151918433-1576655 Batch5_COLO205_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G21_id_MSn_negative.mzML at line 21
index 298 is out of bounds for axis 0 with size 298
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201837202-1878103 09A02_rep_D_Sulmazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201837202-1878103 09A02_rep_D_Sulmazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hA3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hA3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_22_CNR_51.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_22_CNR_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hscC_#3_P5D6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (hscC_#3_P5D6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114829129-1875175 12G11_rep_B_Stavudineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114829129-1875175 12G11_rep_B_Stavudineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152448461-1576917 Batch2_BT20_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210108_AD_26.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125021415-1862760 03A02_rep_C_Isoniazida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125021415-1862760 03A02_rep_C_Isoniazida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130615984-1877548 13H06_rep_C_Molindone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130615984-1877548 13H06_rep_C_Molindone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8G07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113626488-1874599 11E02_rep_C_Olanzapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113626488-1874599 11E02_rep_C_Olanzapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample121.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190119_ES_H3K_batch14_repC_206.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152642922-1577012 Batch2_NCIH838_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201013916-1877733 09D04_rep_B_Opipramol_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201013916-1877733 09D04_rep_B_Opipramol_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glyA_#1_P5H3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (glyA_#1_P5H3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114737992-1875134 12D10_rep_B_Bacitracina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114737992-1875134 12D10_rep_B_Bacitracina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person13_plasma_youth_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person13_plasma_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/035_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153510937-1577426 Batch4_SKOV3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092905901-1879047 14A06_rep_C_Sertaconazole_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092905901-1879047 14A06_rep_C_Sertaconazole_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125036865-1876829 12A11_rep_C_Esmolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125036865-1876829 12A11_rep_C_Esmolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150143154-1864676 02B09_rep_B_Acetylsalicylsalicylic acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150143154-1864676 02B09_rep_B_Acetylsalicylsalicylic acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/470.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152632215-1577003 Batch2_NCIH292_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152056192-1576733 Batch1_NCIH2030_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200656358-1881582 16E01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200656358-1881582 16E01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/696.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD5_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113149278-1874415 11E02_rep_B_Olanzapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113149278-1874415 11E02_rep_B_Olanzapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD5_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_SERUM_V3_CAT.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121741063-1879617 15B01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121741063-1879617 15B01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C6_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A8_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113703075-1922580 2_D1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113703075-1922580 2_D1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/msrC_P3H9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (msrC_P3H9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.hyg_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1143.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1143.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153908254-1577624 Batch6_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_3_RESV_0uM_POS.mzXML at line 689
attributes construct error, line 38, column 81 (HepG2_3_RESV_0uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/533-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093021481-1879105 14G11_rep_C_Parbendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093021481-1879105 14G11_rep_C_Parbendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121223016-1879378 14F09_rep_D_Sarafloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121223016-1879378 14F09_rep_D_Sarafloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wzxB_P4E2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (wzxB_P4E2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/torC_P3B4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (torC_P3B4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112446236-1921979 3_C2_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112446236-1921979 3_C2_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201145992-1877800 09B07_rep_B_Lanatoside_Ca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201145992-1877800 09B07_rep_B_Lanatoside_Ca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114201904-1922844 4_G9_STE2_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114201904-1922844 4_G9_STE2_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD1_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223112165-1869979 01H11_rep_A_Trimethobenzamide hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223112165-1869979 01H11_rep_A_Trimethobenzamide hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_QC_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_QC_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/garK_P4F8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (garK_P4F8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170207_058EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/1e/93792ecc2c1842cf463e408bd2ac13/input_file/SH10_20170207_058EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fumC_P4B5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (fumC_P4B5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130026911-1863254 04A09_rep_A_Clonidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130026911-1863254 04A09_rep_A_Clonidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152337966-1576861 Batch2_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIAD01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124529036-1876628 09F01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124529036-1876628 09F01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike2_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/312.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223954204-1870378 01C10_rep_C_Antipyrineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223954204-1870378 01C10_rep_C_Antipyrineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ1_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083184.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152028454-1576711 Batch1_UMUC3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074712.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201631218-1882007 16E04_rep_C_Clopidogrela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201631218-1882007 16E04_rep_C_Clopidogrela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B11P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152351264-1868112 05H07_rep_D_Etoposidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152351264-1868112 05H07_rep_D_Etoposidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113037546-1874360 11C06_rep_B_Trichlormethiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113037546-1874360 11C06_rep_B_Trichlormethiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GF10_01_16973.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123616954-1876187 08D02_rep_C_Emedastineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123616954-1876187 08D02_rep_C_Emedastineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153113917-1577234 Batch3_SKMES1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3C1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3C1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124940901-1876787 12C09_rep_C_Ethynodiol_diacetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124940901-1876787 12C09_rep_C_Ethynodiol_diacetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_23.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_23.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_1mM_L_AC_AS_Pos.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_1mM_L_AC_AS_Pos.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092424147-1878827 14E07_rep_A_D-cycloserineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092424147-1878827 14E07_rep_A_D-cycloserineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_E9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/005_Urea_Day11_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/295.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100209829-1868869 06B04_rep_D_Carbarsonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100209829-1868869 06B04_rep_D_Carbarsonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/005_Soil_10mMIntra_1_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152650077-1577018 Batch2_NCIH292_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145643135-1863957 02B02_rep_A_Khellina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145643135-1863957 02B02_rep_A_Khellina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1068.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ6_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153201228-1577272 Batch4_A427_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124807349-1862653 03C04_rep_B_Pargyline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124807349-1862653 03C04_rep_B_Pargyline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD2_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD2_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007617_032118-Unst3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153000014-1868397 06H09_rep_A_Felodipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153000014-1868397 06H09_rep_A_Felodipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_101.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample101_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_84.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_84.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153753677-1577561 Batch6_MDAMB435S_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fucA_P3A3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (fucA_P3A3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dmlA_P3E12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (dmlA_P3E12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw2_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113900895-1922683 3_H10_STE2_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113900895-1922683 3_H10_STE2_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111403888-1871466 10G11_rep_B_Cycloheximideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111403888-1871466 10G11_rep_B_Cycloheximideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_63.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folC_P3H6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (folC_P3H6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145805552-1864024 02E01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145805552-1864024 02E01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/284.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114155328-1874864 11D10_rep_D_Ganciclovira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114155328-1874864 11D10_rep_D_Ganciclovira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152430768-1868142 05A08_rep_D_Cefoperazone_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152430768-1868142 05A08_rep_D_Cefoperazone_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009374_IBD200_E2_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151124222-1865125 02G03_rep_D_Dipyridamoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151124222-1865125 02G03_rep_D_Dipyridamoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123001856-1867684 05B06_rep_B_Zaprinasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123001856-1867684 05B06_rep_B_Zaprinasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-087_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151856814-1576637 Batch5_HCC1187_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/005_1020_1_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/962.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211206_LKM_mb_beads_rapid_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ssuE_P4H6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (ssuE_P4H6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153211336-1577280 Batch5_NCIH23_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121900133-1879677 15B07_rep_B_Caffeineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121900133-1879677 15B07_rep_B_Caffeineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151624077-1576510 Batch7_UACC62_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007579_031718-5CRP6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/menB_P3B8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (menB_P3B8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152621431-1576994 Batch1_CALU3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153226460-1577292 Batch4_CAKI1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2E10P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person05_blood_elder_POS.mzXML at line 689
attributes construct error, line 41, column 101 (Person05_blood_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113313628-1922381 1_H1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113313628-1922381 1_H1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1377.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1377.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glgB_P4B7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (glgB_P4B7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165707624-2227461 PAT51.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125908999-1877219 13C01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125908999-1877219 13C01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114304548-1922900 4_G8_STE2_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114304548-1922900 4_G8_STE2_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007494_031618-Unst4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-194_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/831.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101637975-1869560 07F08_rep_C_Piracetamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101637975-1869560 07F08_rep_C_Piracetamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113326201-1922392 1_H4_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113326201-1922392 1_H4_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_066EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/10/bbd7206a06e6546b0f994b75059bc6/input_file/QC_20170209_066EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_115b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_high (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_19040307_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121156691-1879358 14B02_rep_D_Moricizine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121156691-1879358 14B02_rep_D_Moricizine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_AM_3.mzXML at line 689
Premature end of data in tag msRun line 5, line 2425, column 1 (L_AM_3.mzXML, line 2425)
Error processing file: /data/datasets/server/MassIVE/MSV000083595/raw/HT6.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (HT6.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purC_#1_P5B10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (purC_#1_P5B10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2D06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/31.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_78.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150156288-1864686 02A03_rep_B_Fulvestranta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150156288-1864686 02A03_rep_B_Fulvestranta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223013708-1869935 01H04_rep_A_Sulindaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223013708-1869935 01H04_rep_A_Sulindaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113739430-1922612 3_E11_STE2_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113739430-1922612 3_E11_STE2_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D1_preFOS_3_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_79.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125227500-1862861 03C04_rep_C_Pargyline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125227500-1862861 03C04_rep_C_Pargyline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091916936-1878588 13F07_rep_D_Moxonidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091916936-1878588 13F07_rep_D_Moxonidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_sample03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-2-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S005_dilute_190131231845.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091816085-1878539 13H06_rep_D_Molindone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091816085-1878539 13H06_rep_D_Molindone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152307776-1576837 Batch1_HX147_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/90.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121435882-1866946 04E06_rep_B_Chenodiola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121435882-1866946 04E06_rep_B_Chenodiola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113651720-1922570 2_G7_IZH2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113651720-1922570 2_G7_IZH2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200742882-1881616 16D07_rep_A_Fenoldopamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200742882-1881616 16D07_rep_A_Fenoldopamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O22_id_MSn_positive.mzML at line 21
index 402 is out of bounds for axis 0 with size 402
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111636481-1871583 10A09_rep_B_Sulfadimethoxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111636481-1871583 10A09_rep_B_Sulfadimethoxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152439697-1576910 Batch1_NCIH1437_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130520523-1877504 13F02_rep_C_Flucloxacillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130520523-1877504 13F02_rep_C_Flucloxacillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P6_id_MSn_negative.mzML at line 21
index 306 is out of bounds for axis 0 with size 306
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151204783-1576295 Batch5_MALME3M_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152153116-1576778 Batch2_NCIH2291_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_60_AC+_52.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125010183-1862751 03H01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125010183-1862751 03H01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202540320-1878435 10E08_rep_A_Guanadrel_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202540320-1878435 10E08_rep_A_Guanadrel_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091823327-1878545 13D05_rep_D_Cyclopenthiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091823327-1878545 13D05_rep_D_Cyclopenthiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_E2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121615283-1867023 04E05_rep_B_Diethylcarbamazine_citrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121615283-1867023 04E05_rep_B_Diethylcarbamazine_citrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gabD_P4F8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (gabD_P4F8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/cytosine.mzXML at line 689
Premature end of data in tag peaks line 5847, line 5851, column 65010 (cytosine.mzXML, line 5851)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ5_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ2_6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150406175-1924387 1_B3_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150406175-1924387 1_B3_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD3_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190311547-1889780 Wa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_57.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GD3_01_16946.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/CPV_B_rep_2_B-A7_1_5511.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200934472-1877704 09C11_rep_B_Irsogladine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200934472-1877704 09C11_rep_B_Irsogladine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD1_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lplT_P4B1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (lplT_P4B1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092312019-1878771 14F07_rep_A_Estriolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092312019-1878771 14F07_rep_A_Estriolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBmegR131_5h3b.mzML at line 689
Specification mandates value for attribute E, line 82347, column 133 (pBmegR131_5h3b.mzML, line 82347)
Error processing file: /data/datasets/server/MassIVE/MSV000080705/ccms_peak/RAW/24h_lysC_BA.mzML at line 648
Multiple activations for a single precursor is not yet implemented. 
                                                         File: input_file/24h_lysC_BA.mzML 
                                                         Scan: 560
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-193_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170125_061EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b5/32a17dd9ceab6b1a475a0675b07935/input_file/SH8_20170125_061EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_blank_23.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_blank_23.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_018ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/3e/0527006e7eadef24315f7e6df3c772/input_file/QC_20170127_018ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152227005-1868048 05B04_rep_D_Zidovudine,_AZTa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152227005-1868048 05B04_rep_D_Zidovudine,_AZTa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/1_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L80.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L80.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125538886-1877057 12D10_rep_D_Bacitracina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125538886-1877057 12D10_rep_D_Bacitracina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_10_044_prot_63_IMS_12Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD4_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P21_id_MSn_positive.mzML at line 21
index 720 is out of bounds for axis 0 with size 720
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124926351-1862716 03C03_rep_B_Levamisole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124926351-1862716 03C03_rep_B_Levamisole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113630512-1922552 2_E11_IZH2_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113630512-1922552 2_E11_IZH2_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_61.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlA1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlA1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100729410-1869124 07F06_rep_A_Methoxamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100729410-1869124 07F06_rep_A_Methoxamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123613322-1876184 08H11_rep_C_Sertindolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123613322-1876184 08H11_rep_C_Sertindolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_127b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112214420-1921846 3_C3_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112214420-1921846 3_C3_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-042_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223905397-1870341 01A08_rep_C_Amiloride hydrochloride dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223905397-1870341 01A08_rep_C_Amiloride hydrochloride dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417155345.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130511454-1877497 13F04_rep_C_Deptropine_citratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130511454-1877497 13F04_rep_C_Deptropine_citratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124928916-1862718 03A04_rep_B_Chlorzoxazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124928916-1862718 03A04_rep_B_Chlorzoxazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123127646-1867748 05E03_rep_B_Betamethasonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123127646-1867748 05E03_rep_B_Betamethasonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150635795-1924514 2_A9_RGT2_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150635795-1924514 2_A9_RGT2_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F9_id_MSn_positive.mzML at line 21
index 718 is out of bounds for axis 0 with size 718
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD5_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121726575-1879606 15H10_rep_B_Acetylsalicylic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121726575-1879606 15H10_rep_B_Acetylsalicylic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153233455-1868513 06H03_rep_B_Itoprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153233455-1868513 06H03_rep_B_Itoprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_49.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_49.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114247952-1874907 12F09_rep_A_Benserazide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114247952-1874907 12F09_rep_A_Benserazide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153915335-1577630 Batch7_NCIH441_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GG10_01_11555.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_G7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_B8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/947.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150922392-1865030 02F06_rep_D_Methotrexatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150922392-1865030 02F06_rep_D_Methotrexatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113928942-1922708 3_B9_STE2_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113928942-1922708 3_B9_STE2_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_G11_id_positive.mzML at line 21
index 293 is out of bounds for axis 0 with size 293
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std b 001a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample047.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fabG_#4_P5G8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (fabG_#4_P5G8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153700724-1577517 Batch4_DU145_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_134a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151416030-1576404 Batch7_SUM149PT_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152727224-1868278 06D10_rep_A_Carbimazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152727224-1868278 06D10_rep_A_Carbimazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130227114-1877369 13F08_rep_B_Etilefrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130227114-1877369 13F08_rep_B_Etilefrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/PYURF interactome/PYURF_CA1_CEV_07122029.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alsC_P4G6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (alsC_P4G6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/359.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narI_P5H8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (narI_P5H8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112947345-1874325 11F04_rep_B_Liothyronineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112947345-1874325 11F04_rep_B_Liothyronineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121858891-1879676 15B07_rep_B_Caffeinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121858891-1879676 15B07_rep_B_Caffeinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_3_B_rep_1_B-B1_1_5829.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201130388-1877789 09C03_rep_B_D,L-Penicillamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201130388-1877789 09C03_rep_B_D,L-Penicillamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_F6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201636718-1878012 09F09_rep_C_Tetrahydrozoline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201636718-1878012 09F09_rep_C_Tetrahydrozoline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170125_050EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/15/a5a743b85acf1547558fdbfb8cf5fc/input_file/SH9_20170125_050EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150441360-1864812 02H06_rep_C_Paclitaxela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150441360-1864812 02H06_rep_C_Paclitaxela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130119832-1863298 04G05_rep_A_Econazole_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130119832-1863298 04G05_rep_A_Econazole_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113856213-1922679 3_G2_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113856213-1922679 3_G2_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153802132-1868775 06C06_rep_C_Chicago_sky_blue_6Bb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153802132-1868775 06C06_rep_C_Chicago_sky_blue_6Bb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_008EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/2a/59e9cac0586e9a07a4b75090597ffe/input_file/QC_20170209_008EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GD8_01_16951.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112334611-1874030 10A04_rep_D_Phenethicillin_potassium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112334611-1874030 10A04_rep_D_Phenethicillin_potassium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152712550-1577037 Batch2_SW900_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180428_ES_H3K_batch3_repC_34.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_104.mzXML at line 689
Premature end of data in tag peaks line 22054, line 22058, column 3655 (20121114_104.mzXML, line 22058)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151539889-1576473 Batch7_HARA_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H9_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bioB_P3F12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (bioB_P3F12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0046_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Streptomyces_coelicolor_A3n2_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C8_id.mzML at line 21
index 531 is out of bounds for axis 0 with size 531
Error processing file: /data/datasets/server/MassIVE/MSV000084666/raw/InterSpec_SppSwarms/00384_ocotob-3.mzXML at line 689
Premature end of data in tag peaks line 6414, line 6414, column 32548 (00384_ocotob-3.mzXML, line 6414)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_E6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100740736-1869133 07C11_rep_A_Cyclizine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100740736-1869133 07C11_rep_A_Cyclizine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150329670-1864757 02A04_rep_B_Edrophonium chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150329670-1864757 02A04_rep_B_Edrophonium chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113636382-1874607 11B05_rep_C_Cefsulodin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113636382-1874607 11B05_rep_C_Cefsulodin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_3_male_2022_1017_Michael_neg-0.0021.mzML at line 689
Premature end of data in tag binary line 20757, line 20757, column 814233 (2_3_male_2022_1017_Michael_neg-0.0021.mzML, line 20757)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample186.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124906366-1862700 03G09_rep_B_Tropicamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124906366-1862700 03G09_rep_B_Tropicamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123631017-1876198 08C10_rep_C_Azelastine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123631017-1876198 08C10_rep_C_Azelastine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlA2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 718, column 12 (ExtraControlA2a.mzXML, line 718)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yijE_P5G9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (yijE_P5G9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYA004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152139557-1868012 05H11_rep_C_Hesperidin_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152139557-1868012 05H11_rep_C_Hesperidin_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ6_8 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD2_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_17_Liver_CMC_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 88 (Mouse_17_Liver_CMC_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145913241-1864078 02A07_rep_A_Acyclovirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145913241-1864078 02A07_rep_A_Acyclovirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132941896-1733917 blanka.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/livK_P4C6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (livK_P4C6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/entE_#2_P5F4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (entE_#2_P5F4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike2_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_50_NOR_25.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_50_NOR_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153218826-1577286 Batch4_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152739041-1868287 06F07_rep_A_Meclocycline_sulfosalicylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152739041-1868287 06F07_rep_A_Meclocycline_sulfosalicylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O18_id_MSn_positive.mzML at line 21
index 552 is out of bounds for axis 0 with size 552
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/665.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K16_id_MSn_positive.mzML at line 21
index 568 is out of bounds for axis 0 with size 568
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M17_id_MSn_negative.mzML at line 21
index 358 is out of bounds for axis 0 with size 358
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125904386-1863186 04E11_rep_A_Sulfinpyrazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125904386-1863186 04E11_rep_A_Sulfinpyrazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170127_046ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/10/97ab90619f12d0e20619950e3b87a0/input_file/MMW3_20170127_046ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM4AG010.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092610486-1878910 14C10_rep_B_Mesalaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092610486-1878910 14C10_rep_B_Mesalaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_11P_A6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094756/peak/02_TO_mPlasma_CROT_main_BOTTOM_neg_MidNorm.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8A02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/175-4_idMsMs_25min_30eV_GE2_01_4243.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151456363-1576438 Batch6_NCIH1838_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151304104-1924849 3_F3_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151304104-1924849 3_F3_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control170_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control170_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample059.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person20_RBC_youth_POS.mzXML at line 689
attributes construct error, line 41, column 81 (Person20_RBC_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151314833-1576353 Batch7_SNB75_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151911337-1576649 Batch7_NCIH1693_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223512100-1870161 01B08_rep_B_Levodopaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223512100-1870161 01B08_rep_B_Levodopaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153711529-1577526 Batch4_NCIH1048_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/842.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD5_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125857361-1877210 13G02_rep_A_Isradipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125857361-1877210 13G02_rep_A_Isradipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person15_RBC_youth_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Person15_RBC_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130122268-1863300 04D10_rep_A_Methylprednisolone,_6-alphaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130122268-1863300 04D10_rep_A_Methylprednisolone,_6-alphaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088829/raw/AFN12.mzXML at line 689
Opening and ending tag mismatch: peaks line 66458 and scan, line 66472, column 12 (AFN12.mzXML, line 66472)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124447755-1876597 09D03_rep_A_Sumatriptan_succinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124447755-1876597 09D03_rep_A_Sumatriptan_succinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101755362-1869624 07E08_rep_D_Tenoxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101755362-1869624 07E08_rep_D_Tenoxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130740647-1877615 13D07_rep_C_Prothionamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130740647-1877615 13D07_rep_C_Prothionamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hybC_P3H9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (hybC_P3H9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_G2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/FAMEs_C4-C30_2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150244631-1864723 02F06_rep_B_Methotrexateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150244631-1864723 02F06_rep_B_Methotrexateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101457451-1869481 99a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101457451-1869481 99a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122659103-1880043 15A08_rep_D_Valproic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122659103-1880043 15A08_rep_D_Valproic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wzzE_#2_P5F11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (wzzE_#2_P5F11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201001450-1881718 16E01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201001450-1881718 16E01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD4_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_117.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201933398-1878146 09B10_rep_D_6-Furfurylaminopurinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201933398-1878146 09B10_rep_D_6-Furfurylaminopurinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111522475-1921492 1_F11_GAP1_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111522475-1921492 1_F11_GAP1_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122928169-1867657 05B04_rep_B_Zidovudine,_AZTb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122928169-1867657 05B04_rep_B_Zidovudine,_AZTb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112650458-1874186 11D07_rep_A_Indoprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112650458-1874186 11D07_rep_A_Indoprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (28).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_C9_id_negative.mzML at line 21
index 268 is out of bounds for axis 0 with size 268
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/864.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153459987-1577417 Batch5_HCT116_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0018_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4G03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093240716-1879213 14C11_rep_C_Vorinostatb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093240716-1879213 14C11_rep_C_Vorinostatb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dgoK_#1_P4C11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (dgoK_#1_P4C11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B06P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153456804-1868626 06C11_rep_C_Cisapridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153456804-1868626 06C11_rep_C_Cisapridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GC2_01_11649.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100438410-1868986 06H10_rep_D_Racloprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100438410-1868986 06H10_rep_D_Racloprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S58.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S58.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223456380-1870149 01H09_rep_B_Thioridazine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223456380-1870149 01H09_rep_B_Thioridazine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088261/raw/210916_tanaka10.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D12_id_MSn_negative.mzML at line 21
index 335 is out of bounds for axis 0 with size 335
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122046597-1867237 04C10_rep_C_Clomipramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122046597-1867237 04C10_rep_C_Clomipramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113617681-1874592 11E03_rep_C_Trimeprazine_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113617681-1874592 11E03_rep_C_Trimeprazine_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_E7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080705/ccms_peak/RAW/0h_lysC_BA-re.mzML at line 648
Multiple activations for a single precursor is not yet implemented. 
                                                         File: input_file/0h_lysC_BA-re.mzML 
                                                         Scan: 880
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lsrD_#1_P5H4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (lsrD_#1_P5H4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153431811-1577394 Batch5_SW620_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082744/ccms_peak/ST000763/EX00543/Raw data/Lipidomics/NEG/BATCH2/20160330_S00021330_N.mzXML at line 689
error parsing attribute name, line 1815, column 15 (20160330_S00021330_N.mzXML, line 1815)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR23h3a.mzML at line 689
attributes construct error, line 138851, column 145 (pMIBSDR23h3a.mzML, line 138851)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121319710-1866889 04C06_rep_B_Dimenhydrinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121319710-1866889 04C06_rep_B_Dimenhydrinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD3_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_08_leg_skin_control_skin_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_08_leg_skin_control_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/006_Ammonia_Day2_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151836662-1576620 Batch7_NCIH2444_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/681.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_15_P4A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (ctrl_15_P4A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093009524-1879097 14B11_rep_C_Oxaprozinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093009524-1879097 14B11_rep_C_Oxaprozinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153953232-1577662 Batch6_K562_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_5_P_rep_2_B-E8_1_5867.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210119_LKM_yeast_nBut_10to1_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152657151-1577024 Batch1_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151045947-1865095 02A08_rep_D_Diazoxideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151045947-1865095 02A08_rep_D_Diazoxideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GC8_01_11657.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfB_P3A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (hyfB_P3A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1560.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1560.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_19040322_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_12_blood_RESV_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_12_blood_RESV_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/276.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085272/raw/mzXML_Coral_Metabolome_2020/66.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125216558-1862852 03E03_rep_C_Tiratricol,_3,3',5-triiodothyroacetic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125216558-1862852 03E03_rep_C_Tiratricol,_3,3',5-triiodothyroacetic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_34_NOR_50.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_34_NOR_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fdnG_P4B4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (fdnG_P4B4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091818433-1878541 13H09_rep_D_Methyldopate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091818433-1878541 13H09_rep_D_Methyldopate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/202-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151026512-1924713 3_H4_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151026512-1924713 3_H4_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114356960-1874963 12E04_rep_A_Xamoterol_hemifumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114356960-1874963 12E04_rep_A_Xamoterol_hemifumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/597.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-139_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125358713-1876981 12G11_rep_D_Stavudinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125358713-1876981 12G11_rep_D_Stavudinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D12_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_15102011_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_Timedependent/mzML/B_15102011_D0_Neg_cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_RBC2_POS.mzXML at line 689
attributes construct error, line 38, column 72 (Person4_RBC2_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152651304-1577019 Batch2_NCIH292_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/001_Soil_WaterExtra_1_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_0126_190127165826.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_rerun_F2_01_11766.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8B10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_M5_id_MSn_negative.mzML at line 21
index 333 is out of bounds for axis 0 with size 333
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0004_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152113974-1576747 Batch1_MDAMB436_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112008714-1872616 10C03_rep_C_Sulfamethizoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112008714-1872616 10C03_rep_C_Sulfamethizoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dgoD_P4F3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (dgoD_P4F3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153248451-1577310 Batch5_EBC1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201149282-1881798 16F02_rep_B_Irbesartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201149282-1881798 16F02_rep_B_Irbesartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151438354-1924930 4_F10_SNF3_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151438354-1924930 4_F10_SNF3_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201652734-1882023 16C08_rep_C_Algestone_acetophenidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201652734-1882023 16C08_rep_C_Algestone_acetophenidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_3_P_rep_1_B-A4_1_5823.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223718219-2227599 PAT51.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_C1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113112404-1874386 11A01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113112404-1874386 11A01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_17121406_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_C3_id_positive.mzML at line 21
index 320 is out of bounds for axis 0 with size 320
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC01.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybhA_P3F5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ybhA_P3F5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kbl_P3E7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024911 (kbl_P3E7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD3_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_42_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_42_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_MA_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR27_5h3b.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Negative_FGF1_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/BUD1_20EV_RA3_01_22719.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_19040307_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150950440-1924682 2_C4_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150950440-1924682 2_C4_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087756/ccms_peak/PDAC/3_295.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000087756/ccms_peak/PDAC/3_295.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H12_id_MSn_negative.mzML at line 21
index 297 is out of bounds for axis 0 with size 297
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_140.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_140.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yniC_P3B10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (yniC_P3B10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_D1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201941165-1878152 09G10_rep_D_Trioxsalena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201941165-1878152 09G10_rep_D_Trioxsalena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224153767-1870470 01D08_rep_D_Pyrimethamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224153767-1870470 01D08_rep_D_Pyrimethamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151505171-1576445 Batch6_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_C5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112600017-1874146 11F07_rep_A_Tolmetin_sodium_salt_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112600017-1874146 11F07_rep_A_Tolmetin_sodium_salt_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_77.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_B8_id_MSn_negative.mzML at line 21
index 267 is out of bounds for axis 0 with size 267
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417172705.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G02P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151626457-1576512 Batch7_HCC38_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case3_pos.mzXML at line 689
attributes construct error, line 37, column 67 (Case3_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124051308-1876405 08D03_rep_D_Etofenamateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124051308-1876405 08D03_rep_D_Etofenamateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091632975-1878458 13F11_rep_D_Rimexolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091632975-1878458 13F11_rep_D_Rimexolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093202886-1879183 14E03_rep_C_(-)-Eseroline_fumarate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093202886-1879183 14E03_rep_C_(-)-Eseroline_fumarate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130301772-1877396 13G02_rep_B_Isradipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130301772-1877396 13G02_rep_B_Isradipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115029563-1875273 12C10_rep_B_Nabumetoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115029563-1875273 12C10_rep_B_Nabumetoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151748548-1576580 Batch3_PANC1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_8_B-A2_1_5653.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130141937-1877334 13F11_rep_B_Rimexoloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130141937-1877334 13F11_rep_B_Rimexoloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B16_id_negative.mzML at line 21
index 287 is out of bounds for axis 0 with size 287
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152144632-1868016 05B01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152144632-1868016 05B01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223730451-1870267 01A02_rep_C_Azaguanine-8a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223730451-1870267 01A02_rep_C_Azaguanine-8a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152619010-1576992 Batch2_OVCAR8_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control220_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control220_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F14_id_MSn_positive.mzML at line 21
index 687 is out of bounds for axis 0 with size 687
Error processing file: /data/datasets/server/MassIVE/MSV000089994/ccms_peak/QC2_neg.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000089994/ccms_peak/QC2_neg.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp2/20180309173105376-1989053 wound 5da.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/carB_P5H6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (carB_P5H6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C12_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125726411-1877140 13D06_rep_A_Fluvoxamine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125726411-1877140 13D06_rep_A_Fluvoxamine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6D02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114449561-1875006 12A02_rep_A_Niacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114449561-1875006 12A02_rep_A_Niacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_179.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_H_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_H_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C17_id_MSn_negative.mzML at line 21
index 272 is out of bounds for axis 0 with size 272
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201548428-1877976 09C09_rep_C_Acitretina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201548428-1877976 09C09_rep_C_Acitretina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltS_#1_P6B1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (gltS_#1_P6B1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GF11_01_16856.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D9_id_MSn_positive.mzML at line 21
index 688 is out of bounds for axis 0 with size 688
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hC3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hC3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MSA04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/546-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125858701-1877211 13E05_rep_A_Meptazinol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125858701-1877211 13E05_rep_A_Meptazinol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_133.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_SERUM_V2_SSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153310559-1577328 Batch4_NCIH1666_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125858631-1863181 04E01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125858631-1863181 04E01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201647334-1878020 09C10_rep_C_Zonisamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201647334-1878020 09C10_rep_C_Zonisamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124224226-1862264 03E10_rep_A_Metoclopramide_monohydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124224226-1862264 03E10_rep_A_Metoclopramide_monohydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/658.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112533608-1874125 10E10_rep_D_Sulfameterb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112533608-1874125 10E10_rep_D_Sulfameterb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G10Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GB7_01_11639.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111932031-1872587 10D04_rep_C_Demeclocycline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111932031-1872587 10D04_rep_C_Demeclocycline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malK_P4E3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (malK_P4E3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_060EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/06/bb048087b9565c9ef99f82923bd74f/input_file/QC_20170207_060EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_05_AC+_51.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/681.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/263.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H21_id_negative.mzML at line 21
index 253 is out of bounds for axis 0 with size 253
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-14d.mzXML at line 689
Premature end of data in tag msRun line 5, line 1771, column 1 (YnYn-14d.mzXML, line 1771)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100616167-1869064 07F04_rep_A_Phenacetinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100616167-1869064 07F04_rep_A_Phenacetinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNS615_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/amiA_P3A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (amiA_P3A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009652_IBD200_E19_A3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_A8_id_positive.mzML at line 21
index 365 is out of bounds for axis 0 with size 365
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_A4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/007_1029_3_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Bosea_sp__LYD014.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111744857-1921615 1_E2_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111744857-1921615 1_E2_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170125_056EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a2/ce9eab2529e89f50a418647158ad0a/input_file/MMW6_20170125_056EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4C11_160531150834.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_G3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR17_5h1a.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_92.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210108_AD_86.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_05_leg_skin_RESV_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_05_leg_skin_RESV_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (12).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yiaM_P3C3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (yiaM_P3C3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/134_113_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200834674-1881654 16F09_rep_A_Valdecoxibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200834674-1881654 16F09_rep_A_Valdecoxibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD2_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/016_1000uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150418094707.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153152358-1577265 Batch4_A427_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151556675-1576487 Batch7_MIAPACA2_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_012712_Pseudomonas_RW951-2.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124219946-1876476 08B01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124219946-1876476 08B01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114340494-1922932 4_G2_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114340494-1922932 4_G2_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_B8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201954011-1878162 09G08_rep_D_Diphenylpyraline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201954011-1878162 09G08_rep_D_Diphenylpyraline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-4-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person18_RBC_elder_POS.mzXML at line 689
attributes construct error, line 41, column 81 (Person18_RBC_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD5_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GE6_01_11516.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD3_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_AP_2.mzXML at line 689
Premature end of data in tag peaks line 2799, line 2803, column 15850 (L_AP_2.mzXML, line 2803)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151931386-1576666 Batch1_HCC1143_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153256578-1868531 06G02_rep_B_Tropisetron_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153256578-1868531 06G02_rep_B_Tropisetron_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125944726-1877247 13E07_rep_A_Darunavira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125944726-1877247 13E07_rep_A_Darunavira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150342831-1864767 02E11_rep_C_Dexamethasone acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150342831-1864767 02E11_rep_C_Dexamethasone acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095819/raw/202312_209_PA03_10ppb_1uL.mzML at line 21
index 24 is out of bounds for axis 0 with size 23
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_228.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4G07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081530/ccms_peak/blank1_pos_91_01_5567.mzML at line 689
Premature end of data in tag spectrumList line 67, line 141482, column 1 (blank1_pos_91_01_5567.mzML, line 141482)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_H4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LEA1_20EV_RA8_01_22691.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_18_Dorsal_skin_CMC_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_18_Dorsal_skin_CMC_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_G2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/msbA_P4F3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (msbA_P4F3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaO_P3E4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (waaO_P3E4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125306609-1876941 12F04_rep_D_Primidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125306609-1876941 12F04_rep_D_Primidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hC1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hC1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample056.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/atp_pfkA_P6D7_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024911 (atp_pfkA_P6D7_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124430610-1876583 09C04_rep_A_Zileutonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124430610-1876583 09C04_rep_A_Zileutonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tpiA_P4B12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (tpiA_P4B12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165745703-2227496 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_G2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101001132-1869244 07D08_rep_B_Nystatineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101001132-1869244 07D08_rep_B_Nystatineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165736885-2227488 PAT42.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091927071-1878596 13C07_rep_D_Proscillaridin_Aa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091927071-1878596 13C07_rep_D_Proscillaridin_Aa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210314_LKM_rapid_beads_60min_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/672.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223733275-2227612 PAT36.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E5_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_A6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_17121406_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L17_id_MSn_negative.mzML at line 21
index 359 is out of bounds for axis 0 with size 359
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/002_Urea_Day14_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113644744-1922564 2_B3_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113644744-1922564 2_B3_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_G10_id_positive.mzML at line 21
index 409 is out of bounds for axis 0 with size 409
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ahr_P3H2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (ahr_P3H2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STE1_20EV_RA2_01_22710.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30233 - GI-17-442.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153947265-1577657 Batch6_HL60_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145840628-1864052 02A03_rep_A_Fulvestrantb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145840628-1864052 02A03_rep_A_Fulvestrantb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/011_20uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Blank_pesticide_170405014548.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_4_P_ref_2_B-D8_1_5857.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152016992-1576702 Batch1_HCC1143_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/372.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/Blank.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/716.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091738093-1878509 13D10_rep_D_Proguanil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091738093-1878509 13D10_rep_D_Proguanil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/960.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD1_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190127_ES_H3K_batch15_repA_220.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8H04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_19090114_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/manY_P4C2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (manY_P4C2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_25_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_25_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113424994-1922444 2_E8_IZH2_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113424994-1922444 2_E8_IZH2_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_sample10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_84.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-19d-2.mzXML at line 689
Premature end of data in tag peaks line 1499, line 1503, column 3578 (YnYn-19d-2.mzXML, line 1503)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152033657-1576715 Batch1A_UMUC3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190119_ES_H3K_batch14_repC_215.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101838765-1869659 07A10_rep_D_Ceftazidime_pentahydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101838765-1869659 07A10_rep_D_Ceftazidime_pentahydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111444325-1921074 1_D9_GAP1_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111444325-1921074 1_D9_GAP1_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075930.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/27_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/196-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151240101-1576324 Batch5_NCIH446_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp2/20180309173108197-1989056 skin 5db.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/029_CRa_H9M5_M470_L01_K3_high_pos.mzXML at line 689
Premature end of data in tag peaks line 19438, line 19442, column 48628 (029_CRa_H9M5_M470_L01_K3_high_pos.mzXML, line 19442)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Positive_FGF1_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153216331-1577284 Batch5_OVCAR5_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_55.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_55.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223209125-1870022 01C01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223209125-1870022 01C01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_66.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD114_P1-E-7_02_2582.mzML at line 255
Error -3 while decompressing data: invalid distance code
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_19073146_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170207_063EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/d1/c22918f5d907b515374b04a0fced5f/input_file/SH7_20170207_063EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_G2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224321547-1870539 01A01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224321547-1870539 01A01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/54-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample010_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101653745-1869573 07E08_rep_C_Tenoxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101653745-1869573 07E08_rep_C_Tenoxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/acglu_argB_P5D2_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (acglu_argB_P5D2_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124721709-1862616 03A10_rep_B_Hydralazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124721709-1862616 03A10_rep_B_Hydralazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I15_id_MSn_positive.mzML at line 21
index 596 is out of bounds for axis 0 with size 596
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180625_ES_H3K_bacth8_repA_115.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_A4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223508308-1870158 01C05_rep_B_Norethynodrelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223508308-1870158 01C05_rep_B_Norethynodrelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113553272-1922520 2_D2_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113553272-1922520 2_D2_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152129272-1576759 Batch1A_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_85.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121348402-1879441 15F05_rep_A_Ibudilastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121348402-1879441 15F05_rep_A_Ibudilastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101024568-1869263 07B10_rep_B_Propafenone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101024568-1869263 07B10_rep_B_Propafenone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202307323-1878314 10E01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202307323-1878314 10E01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD1_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_P19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/103_92.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125322326-1876953 12A01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125322326-1876953 12A01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152824305-1577097 Batch3_RERFLCA1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D21_id_MSn_negative.mzML at line 21
index 291 is out of bounds for axis 0 with size 291
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc057_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc057_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202458818-1878402 10A09_rep_A_Sulfadimethoxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202458818-1878402 10A09_rep_A_Sulfadimethoxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091912986-1878585 13E03_rep_D_Alfaxaloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091912986-1878585 13E03_rep_D_Alfaxaloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_95.mzXML at line 689
Premature end of data in tag msRun line 5, line 31767, column 1 (20121114_95.mzXML, line 31767)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1273.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1273.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_A3_id_positive.mzML at line 21
index 277 is out of bounds for axis 0 with size 277
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009762_IBD200_E23_B2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rihB_#2_P6E9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (rihB_#2_P6E9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD6_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_03_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_03_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_01_leg_muscle_control_oral_POS.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_01_leg_muscle_control_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_C9_id_MSn_negative.mzML at line 21
index 275 is out of bounds for axis 0 with size 275
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100943652-1869230 07E04_rep_B_Miglitolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100943652-1869230 07E04_rep_B_Miglitolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N13_id_MSn_positive.mzML at line 21
index 532 is out of bounds for axis 0 with size 532
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092342503-1878795 14H04_rep_A_Viomycin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092342503-1878795 14H04_rep_A_Viomycin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122603792-1880000 15D01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122603792-1880000 15D01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_E3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/8_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_131a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNS615_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/315.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152554835-1576972 Batch1_7860_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B6_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113228494-1874446 11C04_rep_B_Sulfamonomethoxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113228494-1874446 11C04_rep_B_Sulfamonomethoxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA16.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_C11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153547628-1577456 Batch5_HCT15_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5C5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5C5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNT371_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I14_id.mzML at line 21
index 566 is out of bounds for axis 0 with size 566
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152151884-1576777 Batch1_HCC1806_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/894.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223838795-1870320 01A09_rep_C_Amprolium hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223838795-1870320 01A09_rep_C_Amprolium hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130734155-1877610 13B01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130734155-1877610 13B01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/OVA1_30EV_RA8_01_22613.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124719247-1862614 03D06_rep_B_Asenapine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124719247-1862614 03D06_rep_B_Asenapine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/002_Urea_Day4_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223837659-1870319 01A09_rep_C_Amprolium hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223837659-1870319 01A09_rep_C_Amprolium hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_152.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc015_neg.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc015_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_80.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091852887-1878569 13H01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091852887-1878569 13H01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130435554-1877469 13D05_rep_B_Cyclopenthiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130435554-1877469 13D05_rep_B_Cyclopenthiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaF_P4G1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (paaF_P4G1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201355797-1881893 16C06_rep_B_Nateglinidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201355797-1881893 16C06_rep_B_Nateglinidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170127_062ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b4/af872693a4e7636751d517f876c5a6/input_file/MMW4_20170127_062ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F7_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101250849-1869380 07G10_rep_B_Trimetazidine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101250849-1869380 07G10_rep_B_Trimetazidine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170209_015ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/9d/eb05d584fdf5a479412c91aac954d7/input_file/SH9_20170209_015ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F3_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (21).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_A9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB5G01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M15_id_MSn_positive.mzML at line 21
index 695 is out of bounds for axis 0 with size 695
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151549511-1576481 Batch7_SN12C_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_011ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/44/8cf45155de395ed6e3712b587acc05/input_file/QC_20170209_011ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152912307-1577138 Batch3_T24_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124306852-1876514 08H03_rep_D_Dipivefrin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124306852-1876514 08H03_rep_D_Dipivefrin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151945112-1576677 Batch1_BT549_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S39.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S39.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person2_Blood_NEG.mzXML at line 689
attributes construct error, line 38, column 73 (Person2_Blood_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/544-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/MS2/MC_Neg_Reps_1_2_3_4/DataMC_Neg_1_2_3_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/MS2/MC_Neg_Reps_1_2_3_4/DataMC_Neg_1_2_3_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122222065-1879830 15E04_rep_C_Aripiprazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122222065-1879830 15E04_rep_C_Aripiprazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124425846-1876579 09D02_rep_A_Dydrogesteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124425846-1876579 09D02_rep_A_Dydrogesteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/154-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121953976-1867195 04C01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121953976-1867195 04C01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_E9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/47-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/78.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I8_id_MSn_negative.mzML at line 21
index 346 is out of bounds for axis 0 with size 346
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_F2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122023937-1867219 04B05_rep_C_Nortriptyline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122023937-1867219 04B05_rep_C_Nortriptyline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD1_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121816948-1867119 04B08_rep_C_Retinoic_acid_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121816948-1867119 04B08_rep_C_Retinoic_acid_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D2_postFOS_3_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_16092759_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201042516-1877754 09F01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201042516-1877754 09F01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121513775-1866975 04F01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121513775-1866975 04F01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OW1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rfbD_P3G10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (rfbD_P3G10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092153/peak/Sample0007.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d8_287_lipid__Neg_17Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 32880, column 1 (SysVirol_IFL001_Cal04RG_d8_287_lipid__Neg_17Sep13_13-07-01.mzXML, line 32880)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_008ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/09/4567b6851e59a13e1315822a748dcd/input_file/QC_20170127_008ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control49_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control49_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/241.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_3_40x_2022_1006_Michael_pos-0.0021.mzML at line 689
Premature end of data in tag binary line 4029, line 4029, column 569275 (1_3_40x_2022_1006_Michael_pos-0.0021.mzML, line 4029)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151218384-1576306 Batch5_NCIH1755_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223745996-1870279 01A01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223745996-1870279 01A01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121043333-1879303 14A04_rep_D_Penbutolol_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121043333-1879303 14A04_rep_D_Penbutolol_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fepD_P4D2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (fepD_P4D2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224044260-1870416 01A08_rep_D_Amiloride hydrochloride dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224044260-1870416 01A08_rep_D_Amiloride hydrochloride dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_17121408_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E4_id_MSn_negative.mzML at line 21
index 318 is out of bounds for axis 0 with size 318
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_20_2022_1003_Michael_leming_liver_neg-0.0044.mzML at line 689
Premature end of data in tag binary line 15334, line 15334, column 321106 (3_20_2022_1003_Michael_leming_liver_neg-0.0044.mzML, line 15334)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112418371-1921955 3_A9_GPR1_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112418371-1921955 3_A9_GPR1_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121547406-1867001 04F03_rep_B_Trazodone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121547406-1867001 04F03_rep_B_Trazodone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A22_id.mzML at line 21
index 549 is out of bounds for axis 0 with size 549
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_B2_01_12194.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J11_id_MSn_negative.mzML at line 21
index 356 is out of bounds for axis 0 with size 356
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_G3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_QC_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control126_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control126_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/410.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aldB_P4A12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (aldB_P4A12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xdhC_P3C7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (xdhC_P3C7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/429.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlA3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlA3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122941672-1875870 08F03_rep_A_Fenipentola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122941672-1875870 08F03_rep_A_Fenipentola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124442855-1876593 09G03_rep_A_Succinylsulfathiazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124442855-1876593 09G03_rep_A_Succinylsulfathiazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argH_P5H4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (argH_P5H4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudJ_P5D1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (nudJ_P5D1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/ccms_peak/3_27_40x_2022_1006_Michael_pos-0.0051.mzML at line 689
Premature end of data in tag binary line 74709, line 74709, column 1450999 (3_27_40x_2022_1006_Michael_pos-0.0051.mzML, line 74709)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/garP_P4F12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (garP_P4F12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009738_IBD200_E20_B6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_18111330_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201841106-1882107 16F08_rep_D_Lofepraminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201841106-1882107 16F08_rep_D_Lofepraminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124824698-1862667 03A02_rep_B_Isoniazidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124824698-1862667 03A02_rep_B_Isoniazidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165808654-2227517 PAT33.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case171_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case171_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/CORN_AAD3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112839513-1922185 4_E1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112839513-1922185 4_E1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153417029-1577382 Batch4_MDAMB435S_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_97.mzXML at line 689
Premature end of data in tag peaks line 34736, line 34740, column 15939 (20121114_97.mzXML, line 34740)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088872/raw/AFN07.mzXML at line 689
Specification mandates value for attribute centroiR, line 650838, column 19 (AFN07.mzXML, line 650838)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2E10Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122020750-1879738 15A10_rep_B_Rifaximina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122020750-1879738 15A10_rep_B_Rifaximina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201705889-1878034 09B01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201705889-1878034 09B01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/araG_P4A12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (araG_P4A12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_H4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Mag_Glu_LbUGT3_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2E10Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_52_CNR_48.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_52_CNR_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7H08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/HFS_vehicle_T24_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151429164-1576415 Batch6_CORL279_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170209_035ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/52/63d7b1f6e2ae72c026057949425fe0/input_file/SH10_20170209_035ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_08P_A9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_140.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1101-B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200845842-1881662 16D06_rep_A_Cefpiramideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200845842-1881662 16D06_rep_A_Cefpiramideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152247718-1868064 05D08_rep_D_Amoxicillina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152247718-1868064 05D08_rep_D_Amoxicillina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100233056-1868887 06G06_rep_D_Tosufloxacin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100233056-1868887 06G06_rep_D_Tosufloxacin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087805/ccms_peak/Media_C5_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_56.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_56.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nagB_P3G6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (nagB_P3G6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094943/raw/MS2/Moustafa_AB_1st.mzML at line 689
Premature end of data in tag indexedmzML line 2, line 35867, column 1 (Moustafa_AB_1st.mzML, line 35867)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_F1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_QC_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc057_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc057_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1534.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1534.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/20221212_carryover_test_noISTD_PLASMA_sample05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_30.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_30.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153813196-1868784 06A07_rep_C_Delavirdinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153813196-1868784 06A07_rep_C_Delavirdinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_75.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151809064-1576597 Batch7_UMC11_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101327152-1869409 07C06_rep_B_Metaproterenol_sulfate,_orciprenaline_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101327152-1869409 07C06_rep_B_Metaproterenol_sulfate,_orciprenaline_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank2_190123164257.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/445.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125947976-1863223 04A07_rep_A_Pinacidilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125947976-1863223 04A07_rep_A_Pinacidilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125847823-1863172 04F07_rep_A_Acemetacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125847823-1863172 04F07_rep_A_Acemetacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114349535-1874957 12B01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114349535-1874957 12B01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/375.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112944416-1922205 1_D9_IZH2_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112944416-1922205 1_D9_IZH2_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/974.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_27_40x_2022_1006_Michael_pos-0.0051.mzML at line 689
Premature end of data in tag binary line 74709, line 74709, column 1450999 (3_27_40x_2022_1006_Michael_pos-0.0051.mzML, line 74709)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130754142-1877626 13G07_rep_C_Arbutinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130754142-1877626 13G07_rep_C_Arbutinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145727443-1863993 02B08_rep_A_Disulfirama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145727443-1863993 02B08_rep_A_Disulfirama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097739/peak/C0_1 MSMS neg.mzML at line 640
'selectedIonList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151924334-1576660 Batch7_NCIH209_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murE_P3A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (murE_P3A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124305439-1862297 03F06_rep_A_Mefexamide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124305439-1862297 03F06_rep_A_Mefexamide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/leuD_#2_P4F2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (leuD_#2_P4F2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_87.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D7_id_MSn_negative.mzML at line 21
index 329 is out of bounds for axis 0 with size 329
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample182_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123900886-1876317 08G03_rep_C_Amisulprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123900886-1876317 08G03_rep_C_Amisulprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201306556-1881856 16D02_rep_B_Aminacrineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201306556-1881856 16D02_rep_B_Aminacrineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180414_ES_H3K_batch7_repC_75.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151613440-1576501 Batch7_NCIH441_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152922782-1868368 06E06_rep_A_Cyclobenzaprine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152922782-1868368 06E06_rep_A_Cyclobenzaprine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F15_id_negative.mzML at line 21
index 244 is out of bounds for axis 0 with size 244
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/citramalic_acid_neg.mzXML at line 689
Premature end of data in tag peaks line 7327, line 7331, column 3565 (citramalic_acid_neg.mzXML, line 7331)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8H09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151812642-1576600 Batch4_HPAC_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122913997-1880149 15H10_rep_D_Acetylsalicylic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122913997-1880149 15H10_rep_D_Acetylsalicylic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_H5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152005438-1867936 05G11_rep_C_Fusidic_acid_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152005438-1867936 05G11_rep_C_Fusidic_acid_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125634625-1863061 03A09_rep_D_Nitrofurantoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125634625-1863061 03A09_rep_D_Nitrofurantoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_07_336_prot_43_IMS_20Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ubiE_P4C5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ubiE_P4C5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/10_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIAJ10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_81.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201118671-1881775 16H07_rep_B_Milnacipran_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201118671-1881775 16H07_rep_B_Milnacipran_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH55.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092819748-1879010 14G03_rep_B_Fexofenadine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092819748-1879010 14G03_rep_B_Fexofenadine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125311854-1876945 12F05_rep_D_Flucytosinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125311854-1876945 12F05_rep_D_Flucytosinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_dilute_190201005822.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153208807-1577278 Batch4_DMS114_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123520352-1876142 08C08_rep_B_Cilostazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123520352-1876142 08C08_rep_B_Cilostazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088606/peak/210116_AR_12_43_C09_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102102448-1869776 07F02_rep_D_Pirenperoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102102448-1869776 07F02_rep_D_Pirenperoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_E11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007632_032118-0.01Thr2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200927642-1881693 16A11_rep_A_Troxipidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200927642-1881693 16A11_rep_A_Troxipidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151449273-1576432 Batch7_KM12_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112344652-1921925 3_F1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112344652-1921925 3_F1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/CORN_AAW1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/447.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152936928-1868379 06E03_rep_A_Clobutinol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152936928-1868379 06E03_rep_A_Clobutinol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152117843-1576750 Batch1_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201947596-1878157 09D01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201947596-1878157 09D01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ycjG_P3D10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (ycjG_P3D10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_121.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_3_RESV_20uM_POS.mzXML at line 689
attributes construct error, line 38, column 82 (C2C12_3_RESV_20uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114117008-1874833 11D03_rep_D_Cefoxitin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114117008-1874833 11D03_rep_D_Cefoxitin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092140834-1878699 14B08_rep_A_Oxprenolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092140834-1878699 14B08_rep_A_Oxprenolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_123.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_A12_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/speA_P3C9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (speA_P3C9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E3_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pdxA_P3B5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (pdxA_P3B5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample165.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121721202-1879602 15H09_rep_B_Sildenafila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121721202-1879602 15H09_rep_B_Sildenafila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114424906-1874986 12E06_rep_A_Thonzonium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114424906-1874986 12E06_rep_A_Thonzonium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L12_id_MSn_positive.mzML at line 21
index 513 is out of bounds for axis 0 with size 513
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_E12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nirC_P3C1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (nirC_P3C1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gapA_P5A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (gapA_P5A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111538081-1921506 1_D4_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111538081-1921506 1_D4_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glmM_P4B10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (glmM_P4B10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHA08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD5_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151354115-1576386 Batch6_RPMI8226_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112426504-1921962 3_C11_GPR1_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112426504-1921962 3_C11_GPR1_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/444.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_F6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114814472-1875163 12C03_rep_B_Abacavir_Sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114814472-1875163 12C03_rep_B_Abacavir_Sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114256615-1922893 4_D7_STE2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114256615-1922893 4_D7_STE2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151446892-1576430 Batch6_RPMI8226_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124700055-1876698 09G04_rep_A_Famprofazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124700055-1876698 09G04_rep_A_Famprofazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GE11_01_17202.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/005_Soil_10mMIntra_1_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153608060-1577473 Batch4_NCIH2342_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR23h3a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 246128, column 2468 (pBlateR23h3a.mzML, line 246128)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190128203259.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200621926-1881556 16A04_rep_A_Trimebutineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200621926-1881556 16A04_rep_A_Trimebutineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person07_plasma_elder_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person07_plasma_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082738/ccms_peak/ST000780/EX00361-lipidomics/Raw data/NEG/20150304_Test.mzXML at line 689
error parsing attribute name, line 681, column 31 (20150304_Test.mzXML, line 681)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cyoD_P4C11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (cyoD_P4C11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person06_plasma_elder_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person06_plasma_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082692/ccms_peak/ST000665/EX00348-lipidomics/Raw data/NEG/Authentic.mzXML at line 689
Opening and ending tag mismatch: peaks line 48749 and msRun, line 54314, column 11 (Authentic.mzXML, line 54314)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202025956-1878187 09E02_rep_D_Pranoprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202025956-1878187 09E02_rep_D_Pranoprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152751090-1577069 Batch2_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079479/ccms_peak/bacterias 2015 esi/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092812231-1879004 14F08_rep_B_(-)-Isoproterenol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092812231-1879004 14F08_rep_B_(-)-Isoproterenol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123351477-1876070 08C11_rep_B_Etretinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123351477-1876070 08C11_rep_B_Etretinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/oppF_#1_P5E10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (oppF_#1_P5E10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000088606/ccms_peak/210116_AR_04_AGE016_A07_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122750545-1880083 15E07_rep_D_Sparfloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122750545-1880083 15E07_rep_D_Sparfloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123114019-1875943 08G11_rep_A_Dimethisoquin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123114019-1875943 08G11_rep_A_Dimethisoquin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152645280-1577014 Batch1_NCIH1395_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086335/raw/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Diaporthe CarGL-2A/M2A9.mzML at line 689
Extra content at the end of the document, line 47298, column 1 (M2A9.mzML, line 47298)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1345.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1345.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/10 Sept 2021/converted/210916_tanaka08.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201825160-1878094 09B06_rep_D_Halcinonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201825160-1878094 09B06_rep_D_Halcinonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112413885-1921951 3_A2_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112413885-1921951 3_A2_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114057100-1922786 4_F11_STE2_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114057100-1922786 4_F11_STE2_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/54-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153850340-1577609 Batch7_EKVX_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145829512-1864043 02B09_rep_A_Acetylsalicylsalicylic acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145829512-1864043 02B09_rep_A_Acetylsalicylsalicylic acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/QC_14_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_97.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100426881-1868977 06E02_rep_D_Estradiol-17_betaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100426881-1868977 06E02_rep_D_Estradiol-17_betaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD2_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120909141-1879232 14G11_rep_D_Parbendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120909141-1879232 14G11_rep_D_Parbendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111753899-1921623 1_A8_GAP1_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111753899-1921623 1_A8_GAP1_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150414196-1864791 02B06_rep_C_Lynestrenolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150414196-1864791 02B06_rep_C_Lynestrenolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122432177-1879929 15A06_rep_C_Fleroxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122432177-1879929 15A06_rep_C_Fleroxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122924803-1875857 08C11_rep_A_Etretinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122924803-1875857 08C11_rep_A_Etretinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114342222-1874951 12D09_rep_A_Nimodipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114342222-1874951 12D09_rep_A_Nimodipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3A09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201823784-1878093 09H01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201823784-1878093 09H01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_D7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122744009-1880078 15H07_rep_D_Rosiglitazone_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122744009-1880078 15H07_rep_D_Rosiglitazone_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113303346-1874474 11B05_rep_B_Cefsulodin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113303346-1874474 11B05_rep_B_Cefsulodin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153719791-1577533 Batch4_NCIH810_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD5_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/016_100uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083442/ccms_peak/mzXMLs/181221_COM13_D592_RPMI_New_Column/mzxml/+COM13_Samp11_TP3_RA3_01_19236.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000083442/ccms_peak/mzXMLs/181221_COM13_D592_RPMI_New_Column/mzxml/+COM13_Samp11_TP3_RA3_01_19236.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case33_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case33_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125450559-1862977 03G04_rep_D_Xylometazoline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125450559-1862977 03G04_rep_D_Xylometazoline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112654037-1922091 4_F5_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112654037-1922091 4_F5_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095538/raw/adphepDD-adphepLD_13C_CE20_msAG250_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024775 (adphepDD-adphepLD_13C_CE20_msAG250_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Pseudoalteromonas_ruthenica_S2756_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc1_T0_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084884/updates/2020-02-03_jamirimoghaddam_67410a78/raw/w20_MBn.mzML at line 689
Premature end of data in tag binary line 59615, line 59615, column 10846 (w20_MBn.mzML, line 59615)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_E12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GG12_01_16874.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150118488-1864176 02A11_rep_B_Pindololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150118488-1864176 02A11_rep_B_Pindololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET74.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET74.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153331499-1577345 Batch4_NCIH1793_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GH3_01_16885.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_3_P4A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (ctrl_3_P4A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3E05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114340945-1874950 12D09_rep_A_Nimodipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114340945-1874950 12D09_rep_A_Nimodipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153639872-1868709 06D08_rep_C_Digoxinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153639872-1868709 06D08_rep_C_Digoxinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-cc7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122848833-1880129 15H05_rep_D_Rufloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122848833-1880129 15H05_rep_D_Rufloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180505_ES_batch4B_pWT_c.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114516952-1875027 12G08_rep_A_Prazosin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114516952-1875027 12G08_rep_A_Prazosin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122510710-1879959 15E10_rep_C_Tripelennamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122510710-1879959 15E10_rep_C_Tripelennamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_156.mzXML at line 689
Premature end of data in tag msRun line 5, line 23556, column 1 (20121114_156.mzXML, line 23556)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C9_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/125-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/365.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_G9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153805598-1577571 Batch6_SF268_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224155011-1870471 01C05_rep_D_Norethynodrela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224155011-1870471 01C05_rep_D_Norethynodrela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075113.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152110642-1867989 05A01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152110642-1867989 05A01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD6_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_F4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_43.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_43.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F22_id.mzML at line 21
index 529 is out of bounds for axis 0 with size 529
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0013_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gsiA_#1_P3E10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (gsiA_#1_P3E10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample190.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cynX_P6A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (cynX_P6A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-012_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2D07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201730951-1878053 09B11_rep_C_Avermectin_B1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201730951-1878053 09B11_rep_C_Avermectin_B1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L23_id.mzML at line 21
index 574 is out of bounds for axis 0 with size 574
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101146363-1869328 07H07_rep_B_Mirtazapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101146363-1869328 07H07_rep_B_Mirtazapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_C8_id_negative.mzML at line 21
index 206 is out of bounds for axis 0 with size 206
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150408524-1924389 1_E7_RGT2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150408524-1924389 1_E7_RGT2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix9_160601055037.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091750829-1878519 13E02_rep_D_Alfadolone_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091750829-1878519 13E02_rep_D_Alfadolone_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG006A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080705/ccms_peak/RAW/6h_lysC_BA-re.mzML at line 648
Multiple activations for a single precursor is not yet implemented. 
                                                         File: input_file/6h_lysC_BA-re.mzML 
                                                         Scan: 828
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102055018-1869770 07H04_rep_D_Pentamidine_isethionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102055018-1869770 07H04_rep_D_Pentamidine_isethionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J13_id_MSn_negative.mzML at line 21
index 340 is out of bounds for axis 0 with size 340
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frdD_#1_P6F7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (frdD_#1_P6F7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_401.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yniC_P3B10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (yniC_P3B10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/6_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100604969-1869055 07B04_rep_A_Omeprazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100604969-1869055 07B04_rep_A_Omeprazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_86.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lacY_P5D6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (lacY_P5D6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092038493-1878651 14D08_rep_A_Formestaneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092038493-1878651 14D08_rep_A_Formestaneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2L003B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1129.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1129.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122609867-1867498 05F11_rep_A_Clebopride_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122609867-1867498 05F11_rep_A_Clebopride_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121417356-1866932 04C05_rep_B_Dyclonine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121417356-1866932 04C05_rep_B_Dyclonine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_Batch03_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_F21_id_MSn_negative.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/torY_#2_P4H2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (torY_#2_P4H2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1205.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1205.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_46_CNR_49.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_46_CNR_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample123.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S129.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S129.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224310292-1870530 01A10_rep_D_Hydrochlorothiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224310292-1870530 01A10_rep_D_Hydrochlorothiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113304437-1922373 1_F4_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113304437-1922373 1_F4_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123808390-1876275 08A04_rep_C_Pyridostigmine_iodideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123808390-1876275 08A04_rep_C_Pyridostigmine_iodideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_H7_01_12186.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100649409-1869091 07B05_rep_A_Propylthiouracila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100649409-1869091 07B05_rep_A_Propylthiouracila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydiF_#1_P3B12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (ydiF_#1_P3B12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dgoA_P4A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (dgoA_P4A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007629_032118-0.01Thr1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C4_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125301438-1876937 12C11_rep_D_Nisoxetine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125301438-1876937 12C11_rep_D_Nisoxetine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_4_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112842891-1922188 4_D8_GPR1_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112842891-1922188 4_D8_GPR1_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124350314-1876550 09G08_rep_A_Diphenylpyraline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124350314-1876550 09G08_rep_A_Diphenylpyraline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093206514-1879186 14E09_rep_C_(+,-)-Synephrinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093206514-1879186 14E09_rep_C_(+,-)-Synephrinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_17.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_17.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112224807-1873589 10E03_rep_D_Sulfapyridinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112224807-1873589 10E03_rep_D_Sulfapyridinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnD_P3A12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (phnD_P3A12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_18_NOR_48.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_18_NOR_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093143395-1879167 14C03_rep_C_Ioxaglic_acid_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093143395-1879167 14C03_rep_C_Ioxaglic_acid_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ssuA_P3E11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (ssuA_P3E11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample210_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample23n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P6_id_MSn_negative.mzML at line 21
index 387 is out of bounds for axis 0 with size 387
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125826228-1863154 04E07_rep_A_Perhexiline_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125826228-1863154 04E07_rep_A_Perhexiline_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201554193-1881979 16A02_rep_C_Nelfinavir_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201554193-1881979 16A02_rep_C_Nelfinavir_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G15_id_MSn_positive.mzML at line 21
index 692 is out of bounds for axis 0 with size 692
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153839639-1577600 Batch6_CCRFCEM_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152116533-1576749 Batch1A_UMUC3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112841801-1922187 4_F7_GPR1_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112841801-1922187 4_F7_GPR1_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101842577-1869662 07D04_rep_D_Norcyclobenzaprineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101842577-1869662 07D04_rep_D_Norcyclobenzaprineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ5_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_C2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190124_ES_H3K_batch15_repC_124.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/989.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101214956-1869351 99a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101214956-1869351 99a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170209_035ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/d5/b56ca84529d92d47bfd6c1278e056e/input_file/SH10_20170209_035ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_04_AC+_53.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/650.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092201070-1878715 14D01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092201070-1878715 14D01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2A12_160527130937.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092218173-1878729 14B04_rep_A_Pivmecillinam_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092218173-1878729 14B04_rep_A_Pivmecillinam_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2F06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223411935-1870115 01D07_rep_B_Troleandomycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223411935-1870115 01D07_rep_B_Troleandomycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_92.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.afg_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R23h2a.mzML at line 689
Opening and ending tag mismatch: binary line 127954 and scanList, line 127965, column 22 (pBlichMO17R23h2a.mzML, line 127965)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ6_3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223708363-1870250 01G03_rep_C_Homatropine hydrobromide (R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223708363-1870250 01G03_rep_C_Homatropine hydrobromide (R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD6_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151654710-1576536 Batch7_SF295_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_C11_id_MSn_negative_2.mzML at line 21
index 285 is out of bounds for axis 0 with size 285
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O20_id_MSn_positive.mzML at line 21
index 565 is out of bounds for axis 0 with size 565
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2F12_160527055109.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111824040-1921649 2_G4_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111824040-1921649 2_G4_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170209_050ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/64/69fcaa8a4f7dc893e615d03332025f/input_file/MMW4_20170209_050ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150606714-1924489 1_H7_RGT2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150606714-1924489 1_H7_RGT2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150315237-1864746 02E07_rep_B_Mefloquine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150315237-1864746 02E07_rep_B_Mefloquine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152506590-1868169 05H05_rep_D_Kanamycin_A_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152506590-1868169 05H05_rep_D_Kanamycin_A_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111451675-1871503 10D03_rep_B_Phenazopyridine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111451675-1871503 10D03_rep_B_Phenazopyridine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/674.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6B03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_63_AC+_40.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/003_1016_1_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220222_LKM_MouseBrain_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Pseudoalteromonas_rubra_S2471_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224247324-1870512 01C02_rep_D_Sulfaphenazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224247324-1870512 01C02_rep_D_Sulfaphenazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C24_id_MSn_positive.mzML at line 21
index 410 is out of bounds for axis 0 with size 410
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2C04P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/917.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122429981-1867417 04F02_rep_D_Dantrolene_sodium_salt_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122429981-1867417 04F02_rep_D_Dantrolene_sodium_salt_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152815460-1868315 06E07_rep_A_Carteolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152815460-1868315 06E07_rep_A_Carteolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD6_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123629729-1876197 08E06_rep_C_Carbadoxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123629729-1876197 08E06_rep_C_Carbadoxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J13_id_negative.mzML at line 21
index 254 is out of bounds for axis 0 with size 254
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD1_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152309049-1576838 Batch2_NCIH522_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/TAA204_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cyaA_#1_P4H3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (cyaA_#1_P4H3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201657948-1882027 16H09_rep_C_Brimonidine_L-Tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201657948-1882027 16H09_rep_C_Brimonidine_L-Tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/LiLi-7d.mzXML at line 689
Premature end of data in tag msRun line 5, line 27592, column 1 (LiLi-7d.mzXML, line 27592)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_G5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_G5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113443635-1922460 2_F11_IZH2_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113443635-1922460 2_F11_IZH2_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121844155-1879665 15G06_rep_B_Racepinephrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121844155-1879665 15G06_rep_B_Racepinephrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094943/raw/MS2/Moustafa_A_MSMS2.mzML at line 689
Premature end of data in tag binary line 29863, line 29863, column 7461 (Moustafa_A_MSMS2.mzML, line 29863)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I13_id_MSn_positive.mzML at line 21
index 353 is out of bounds for axis 0 with size 353
Error processing file: /data/datasets/server/MassIVE/MSV000086335/raw/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Diaporthe CarGL-23A/I-1_a.mzML at line 689
Extra content at the end of the document, line 65141, column 1 (I-1_a.mzML, line 65141)
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR07/WithKBr/140310P330eV.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD2_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD2_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124808579-1862654 03C08_rep_B_Catharanthinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124808579-1862654 03C08_rep_B_Catharanthinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/adiC_#1_P5F2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (adiC_#1_P5F2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112820899-1922168 4_D5_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112820899-1922168 4_D5_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/Blank2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P11_id_MSn_positive.mzML at line 21
index 567 is out of bounds for axis 0 with size 567
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_142.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/artJ_P4G12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (artJ_P4G12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYA003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/TM-plasma-S2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/634.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/412.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/89.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153751306-1577559 Batch6_OVCAR8_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD2_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085105/peak/New directory FOR KWAKU/KK14_RC6_01_13703.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170125_014EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/5b/be9b3129354fc5c61e1732628813e8/input_file/MMW3_20170125_014EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153421873-1577386 Batch5_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/CPV_P_rep_1_B-C2_1_5654.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_38_NOR_40.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_38_NOR_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201925644-1878140 09F02_rep_D_Tylosina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201925644-1878140 09F02_rep_D_Tylosina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C1_id_MSn_negative.mzML at line 21
index 297 is out of bounds for axis 0 with size 297
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR324h1a.mzML at line 689
attributes construct error, line 42650, column 110 (pMIBSDR324h1a.mzML, line 42650)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111911570-1872571 10A02_rep_C_Althiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111911570-1872571 10A02_rep_C_Althiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153847958-1577607 Batch6_OVCAR8_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113028437-1874354 11G02_rep_B_Gabapentina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113028437-1874354 11G02_rep_B_Gabapentina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122454172-1879946 15E06_rep_C_Fluocinolone_acetonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122454172-1879946 15E06_rep_C_Fluocinolone_acetonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_74.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125534944-1877054 12G07_rep_D_Altretamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125534944-1877054 12G07_rep_D_Altretamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088606/peak/210116_AR_11_23A_F10_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C1_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG009B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P11_id.mzML at line 21
index 561 is out of bounds for axis 0 with size 561
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/418.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/005_1020_1_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152845387-1577115 Batch3_SKLU1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092909646-1879050 14H01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092909646-1879050 14H01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K2_id_negative.mzML at line 21
index 266 is out of bounds for axis 0 with size 266
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122207864-1879819 15F09_rep_C_Telmisartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122207864-1879819 15F09_rep_C_Telmisartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pflA_#1_P4F10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (pflA_#1_P4F10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample162.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124654067-1862594 03E09_rep_B_Trimethoprim_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124654067-1862594 03E09_rep_B_Trimethoprim_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112814763-1874253 11B08_rep_A_Deflazacortb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112814763-1874253 11B08_rep_A_Deflazacortb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yeeO_P3D12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (yeeO_P3D12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaI_P3A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (paaI_P3A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151829384-1576614 Batch7_UACC257_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153622522-1577485 Batch4_NCIH810_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I18_id_MSn_positive.mzML at line 21
index 338 is out of bounds for axis 0 with size 338
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_E3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample147.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224207864-1870481 01E03_rep_D_Moxisylyte hydrochoridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224207864-1870481 01E03_rep_D_Moxisylyte hydrochoridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123743131-1876255 08E10_rep_C_Ipsapironeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123743131-1876255 08E10_rep_C_Ipsapironeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201254573-1881847 16C09_rep_B_Actarita.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201254573-1881847 16C09_rep_B_Actarita.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hB3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hB3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD6_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151602740-1576492 Batch7_CAL51_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNQ865_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/10_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/579-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124340768-1862325 03D11_rep_A_Camptothecine_(S,+)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124340768-1862325 03D11_rep_A_Camptothecine_(S,+)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample6n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122529992-1879974 15C01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122529992-1879974 15C01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113337505-1922402 2_D7_IZH2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113337505-1922402 2_D7_IZH2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_354.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152740388-1577060 Batch1_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_B9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/amiB_P3H1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (amiB_P3H1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172639030-1889899 Wb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ1_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130011631-1863242 04C09_rep_A_Vinpocetinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130011631-1863242 04C09_rep_A_Vinpocetinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tauC_P5C8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (tauC_P5C8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122648470-1880035 15F03_rep_D_Atorvastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122648470-1880035 15F03_rep_D_Atorvastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153225845-1868507 06C04_rep_B_Carisoprodolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153225845-1868507 06C04_rep_B_Carisoprodolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_A5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151429121-1924922 4_B2_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151429121-1924922 4_B2_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112850141-1874281 11G02_rep_A_Gabapentinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112850141-1874281 11G02_rep_A_Gabapentinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_Batch03_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arnB_#1_P4F5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (arnB_#1_P4F5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdsB_P3G1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (kdsB_P3G1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_QC_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_QC_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170209_028ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e5/fd3581d44af9c514b2bbdcf8cd3224/input_file/MMW6_20170209_028ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114344641-1874953 12F03_rep_A_S(-)Eticlopride_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114344641-1874953 12F03_rep_A_S(-)Eticlopride_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/entB_P5G8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (entB_P5G8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/909.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130647755-1877573 13H09_rep_C_Methyldopate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130647755-1877573 13H09_rep_C_Methyldopate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084275/peak/00068_psycac-C3.mzXML at line 689
Premature end of data in tag peaks line 48, line 48, column 13032 (00068_psycac-C3.mzXML, line 48)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A2_id_MSn_negative_20240405203133.mzML at line 21
index 392 is out of bounds for axis 0 with size 392
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_16_Liver_CMC_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 88 (Mouse_16_Liver_CMC_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_C11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_G6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/-ve_MS_M.mzXML at line 689
Premature end of data in tag peaks line 23726, line 23729, column 221663 (-ve_MS_M.mzXML, line 23729)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153158140-1868485 06E01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153158140-1868485 06E01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_D5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_103.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_103.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113004983-1922222 1_B3_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113004983-1922222 1_B3_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112353381-1874045 10D10_rep_D_Methacholine_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112353381-1874045 10D10_rep_D_Methacholine_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_G11_id_negative.mzML at line 21
index 285 is out of bounds for axis 0 with size 285
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-faux (5).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094792/raw/raw_files/Erythropodium.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B11_id_MSn_positive.mzML at line 21
index 611 is out of bounds for axis 0 with size 611
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_16092759_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114033619-1874798 11E01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114033619-1874798 11E01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153025097-1577197 Batch3_NCIH460DNP53_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201741667-1878061 09A04_rep_C_Flunisolideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201741667-1878061 09A04_rep_C_Flunisolideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lptC_#1_P4B8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (lptC_#1_P4B8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_low (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152935925-1577158 Batch3_T24_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample221_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152754681-1577072 Batch1_769P_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample085.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_08_blood_control_skin_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_08_blood_control_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_plasma_0h_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer3_plasma_0h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092960/raw/HILIC_plusDDA/HILIC/20221111-JC-471_HILIC_048_01.mzML at line 689
Premature end of data in tag binary line 48433, line 48433, column 13429 (20221111-JC-471_HILIC_048_01.mzML, line 48433)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7E04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_H1_01_12177.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_C3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113248283-1922359 1_D11_IZH2_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113248283-1922359 1_D11_IZH2_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151914725-1867895 05H02_rep_C_Terbutaline_hemisulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151914725-1867895 05H02_rep_C_Terbutaline_hemisulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_H_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122629804-1867514 05G10_rep_A_Ketoconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122629804-1867514 05G10_rep_A_Ketoconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlC1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraControlC1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_C3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151135737-1576271 Batch5_LUDLU1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201751431-1882068 16A10_rep_C_Ubenimexb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201751431-1882068 16A10_rep_C_Ubenimexb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210112_AD_88.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121323145-1879422 15A05_rep_A_Sulbactama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121323145-1879422 15A05_rep_A_Sulbactama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114422082-1922969 4_A11_STE2_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114422082-1922969 4_A11_STE2_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yigB_P3C4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (yigB_P3C4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MIXEE_20170125_070EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/4b/114a3e91de531a5f6bf22ee03577b2/input_file/MIXEE_20170125_070EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_C4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_MA_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083395/peak/mzML/Blank_20190131130726.mzML at line 689
AttValue: ' expected, line 360094, column 57 (Blank_20190131130726.mzML, line 360094)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152701553-1868258 06F02_rep_A_Alizapride_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152701553-1868258 06F02_rep_A_Alizapride_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G24_id.mzML at line 21
index 525 is out of bounds for axis 0 with size 525
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case206_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case206_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_090a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223006698-1869930 01E01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223006698-1869930 01E01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223647282-1870234 01D04_rep_C_Diprophyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223647282-1870234 01D04_rep_C_Diprophyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201350187-1877891 09A08_rep_C_Rebamipideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201350187-1877891 09A08_rep_C_Rebamipideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/866.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_E3_id_positive.mzML at line 21
index 370 is out of bounds for axis 0 with size 370
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30235 - GI-17-480.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fepA_P4E8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (fepA_P4E8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_C4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GB1_01_17148.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_A7_id_positive.mzML at line 21
index 317 is out of bounds for axis 0 with size 317
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152654920-1868253 06C01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152654920-1868253 06C01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-040_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201957977-1882167 16D08_rep_D_Adapalenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201957977-1882167 16D08_rep_D_Adapalenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/017_CRa_H9M5_M470_H03_K1_high_pos.mzXML at line 689
Premature end of data in tag peaks line 19134, line 19138, column 48628 (017_CRa_H9M5_M470_H03_K1_high_pos.mzXML, line 19138)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152319280-1868088 05E03_rep_D_Betamethasonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152319280-1868088 05E03_rep_D_Betamethasonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G8_id_MSn_negative.mzML at line 21
index 338 is out of bounds for axis 0 with size 338
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150535093-1924462 1_F1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150535093-1924462 1_F1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GD12_01_11679.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_93.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_C6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L10_id_MSn_positive.mzML at line 21
index 407 is out of bounds for axis 0 with size 407
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153611644-1577476 Batch4_NCIH1666_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130113563-1877312 13E02_rep_B_Alfadolone_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130113563-1877312 13E02_rep_B_Alfadolone_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD6_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glgA_P3F9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (glgA_P3F9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A6_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_17111316_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample008.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS307Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpTen1_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122913617-1875848 08A11_rep_A_Nicotinamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122913617-1875848 08A11_rep_A_Nicotinamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaF_#2_P4C11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (waaF_#2_P4C11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hB2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hB2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GE8_01_17076.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080389/peak/Peak_List_Files/mLm_CC_Tmem111_E18-5_AT2_Mut_3_P_15Sep16_Arwen_16-08-17.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092736948-1878977 14E01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092736948-1878977 14E01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GE2_01_11684.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample3n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8H09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yeaV_P3A2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (yeaV_P3A2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100654308-1869095 07E03_rep_A_Thiostreptona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100654308-1869095 07E03_rep_A_Thiostreptona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_86.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092718859-1878963 14F04_rep_B_Misoprostolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092718859-1878963 14F04_rep_B_Misoprostolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079284/ccms_peak/Duncan et al. 30 Salinispora/1a.mzXML at line 689
Premature end of data in tag mzXML line 2, line 5, column 1 (1a.mzXML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091955277-1878618 13E10_rep_D_Pivampicillina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091955277-1878618 13E10_rep_D_Pivampicillina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121452597-1866959 04F10_rep_B_Mifepristoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121452597-1866959 04F10_rep_B_Mifepristoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_G5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151902173-1867885 05F02_rep_C_Ketotifen_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151902173-1867885 05F02_rep_C_Ketotifen_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220222_LKM_HEK_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112805793-1874246 11E11_rep_A_Equilina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112805793-1874246 11E11_rep_A_Equilina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR17_5h2a.mzML at line 689
Specification mandates value for attribute acRAOiCES1sAhEb1wJRLmmCUQP2QlE, line 245870, column 65 (pMIBSDR17_5h2a.mzML, line 245870)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GG9_01_11554.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STY1_MS_RA2_01_22636.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113704182-1922581 2_D1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113704182-1922581 2_D1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122709432-1880051 15B06_rep_D_Amcinonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122709432-1880051 15B06_rep_D_Amcinonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170127_025ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/42/585f8ebcd5bd1dc3d4135209f3dd91/input_file/MMW6_20170127_025ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_87.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101820093-1869644 07G05_rep_D_Tobramycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101820093-1869644 07G05_rep_D_Tobramycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151119087-1865121 02A11_rep_D_Pindololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151119087-1865121 02A11_rep_D_Pindololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007623_032118-Unst6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124551179-1876644 09E07_rep_A_Tigecyclinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124551179-1876644 09E07_rep_A_Tigecyclinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uacT_#1_P4E12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (uacT_#1_P4E12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD4_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2B12_160527161118.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_2_B_rep_2_B-D5_1_5667.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121407866-1866925 04D02_rep_B_Vincamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121407866-1866925 04D02_rep_B_Vincamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/R24_II_ESI-.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gcd_#4_P4D6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (gcd_#4_P4D6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165914712-2227578 PAT39.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125148161-1862829 03D07_rep_C_Pentoxifyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125148161-1862829 03D07_rep_C_Pentoxifyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111850069-1872073 10G11_rep_C_Cycloheximideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111850069-1872073 10G11_rep_C_Cycloheximideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A11_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123117478-1867740 05F10_rep_B_Nefazodone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123117478-1867740 05F10_rep_B_Nefazodone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control132_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control132_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M14_id_MSn_negative.mzML at line 21
index 358 is out of bounds for axis 0 with size 358
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112322149-1873635 10E02_rep_D_Butambena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112322149-1873635 10E02_rep_D_Butambena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhtA_P4H1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (rhtA_P4H1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/1.5_DMSO.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_E12_id_negative.mzML at line 21
index 264 is out of bounds for axis 0 with size 264
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_58_CNR_49.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_58_CNR_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E24_id_negative.mzML at line 21
index 260 is out of bounds for axis 0 with size 260
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152233382-1868053 05F09_rep_D_Bezafibrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152233382-1868053 05F09_rep_D_Bezafibrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093526/peak/mzML/multiCE/Sa01_Water_POS_MultiNCE.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202111821-1878223 09F03_rep_D_Citalopram_Hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202111821-1878223 09F03_rep_D_Citalopram_Hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_C3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mgsA_P3D8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (mgsA_P3D8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M4_id_MSn_positive.mzML at line 21
index 699 is out of bounds for axis 0 with size 699
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151541084-1576474 Batch7_SN12C_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222853589-1869875 01C04_rep_A_Sulfadiazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222853589-1869875 01C04_rep_A_Sulfadiazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F2_id_MSn_positive.mzML at line 21
index 398 is out of bounds for axis 0 with size 398
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112007419-1872615 10C03_rep_C_Sulfamethizolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112007419-1872615 10C03_rep_C_Sulfamethizolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8C08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100821279-1869165 07D10_rep_A_Imipenema.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100821279-1869165 07D10_rep_A_Imipenema.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123034264-1875911 08F11_rep_A_Acamprosate_calciumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123034264-1875911 08F11_rep_A_Acamprosate_calciumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150234256-1864715 02A06_rep_B_Baclofen (R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150234256-1864715 02A06_rep_B_Baclofen (R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113031719-1922242 1_B8_IZH2_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113031719-1922242 1_B8_IZH2_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_54.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_54.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113627717-1874600 11D02_rep_C_Butacainea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113627717-1874600 11D02_rep_C_Butacainea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123956968-1876362 08B09_rep_D_Ropinirole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123956968-1876362 08B09_rep_D_Ropinirole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD4_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152705457-1577031 Batch3_KP4_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121616544-1867024 04A04_rep_B_Bufexamaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121616544-1867024 04A04_rep_B_Bufexamaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpTen2_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_plasma_24h_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer4_plasma_24h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/setB_P4C5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (setB_P4C5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180914_ES_H3K_batch2_repC_19.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G08P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ygbL_P4G2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (ygbL_P4G2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1A12_160525145311.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHL07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F22_id_negative.mzML at line 21
index 246 is out of bounds for axis 0 with size 246
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/cytidine_neg.mzXML at line 689
Premature end of data in tag peaks line 7527, line 7531, column 48619 (cytidine_neg.mzXML, line 7531)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201745166-1882063 16D03_rep_C_Pidotimoda.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201745166-1882063 16D03_rep_C_Pidotimoda.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_8_P3A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (ctrl_8_P3A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_A15M_pos_IMS1_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124159076-1862244 03B06_rep_A_Aceclofenacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124159076-1862244 03B06_rep_A_Aceclofenacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD2_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125739357-1863115 04A05_rep_A_Glutethimide,_para-aminob.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125739357-1863115 04A05_rep_A_Glutethimide,_para-aminob.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123318654-1876043 08A05_rep_B_Pentobarbitalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123318654-1876043 08A05_rep_B_Pentobarbitalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1317.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1317.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cbdB_P5A3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (cbdB_P5A3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201733289-1882054 16B06_rep_C_Pantoprazole_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201733289-1882054 16B06_rep_C_Pantoprazole_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_02_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_02_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_180.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112302504-1921888 3_B9_GPR1_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112302504-1921888 3_B9_GPR1_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/24 Sept 2021 - Copy/convert/210924_07.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M21_id_MSn_negative.mzML at line 21
index 329 is out of bounds for axis 0 with size 329
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1213.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1213.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I3_id_MSn_positive.mzML at line 21
index 412 is out of bounds for axis 0 with size 412
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_O16_id_MSn_negative.mzML at line 21
index 360 is out of bounds for axis 0 with size 360
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132920947-1733900 1fb Skin 1 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gpmA_P5H1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (gpmA_P5H1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_1_RESV_0uM_NEG.mzXML at line 689
attributes construct error, line 38, column 81 (HepG2_1_RESV_0uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151718317-1925060 4_B4_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151718317-1925060 4_B4_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/22_D24062013T2208_1399CBU_01QC_C1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_53_NOR_25.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_53_NOR_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122656495-1880041 15G10_rep_D_Imiquimodb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122656495-1880041 15G10_rep_D_Imiquimodb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ROO1_50EV_RA1_01_22705.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102015082-1869737 07E01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102015082-1869737 07E01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/873.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_0126_190128123128.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122522703-1867460 05H06_rep_A_Amikacin_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122522703-1867460 05H06_rep_A_Amikacin_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113503115-1874533 11B06_rep_C_Fosfosalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113503115-1874533 11B06_rep_C_Fosfosalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150352193-1924375 1_H2_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150352193-1924375 1_H2_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112245464-1921873 3_D1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112245464-1921873 3_D1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150330736-1924357 1_F3_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150330736-1924357 1_F3_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113204621-1874427 11H11_rep_B_Carbacholb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113204621-1874427 11H11_rep_B_Carbacholb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM5D006.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_C16_id_MSn_negative.mzML at line 21
index 298 is out of bounds for axis 0 with size 298
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/354.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V4_EDTAk2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170127_027ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/cb/d06eb99509d84e1635c6ddfa654536/input_file/MMW4_20170127_027ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mngB_P6C4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (mngB_P6C4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152326645-1576852 Batch2_NCIH226_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K14_id.mzML at line 21
index 476 is out of bounds for axis 0 with size 476
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G09Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlD3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlD3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007637_032118-0.01Thr3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/PDI-flfl-plasma-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112050648-1873034 10C08_rep_C_Aprepitanta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112050648-1873034 10C08_rep_C_Aprepitanta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_32_AC+_50.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124956678-1862740 03E01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124956678-1862740 03E01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case3_neg.mzXML at line 689
attributes construct error, line 37, column 67 (Case3_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000092259/peak/Sample0007.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6F06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092429250-1878831 14B09_rep_A_Ondansetron_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092429250-1878831 14B09_rep_A_Ondansetron_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S123.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S123.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092907275-1879048 14A02_rep_C_Etomidatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092907275-1879048 14A02_rep_C_Etomidatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/Blank15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narG_P3H12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (narG_P3H12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M17_id_MSn_positive_20240503130525.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/070_69.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/blank_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_A8_id_positive.mzML at line 21
index 348 is out of bounds for axis 0 with size 348
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007639_032118-0.01Thr4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112145732-1873558 10A11_rep_D_Balsalazide_Sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112145732-1873558 10A11_rep_D_Balsalazide_Sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_C5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093270/raw/20190522_KBL_JM_504478_Plant_Arab_QE-HF_C18_USDAY47560/mzml_files/20190522_KBL_JM_504478_Plant_Arab_QE-HF_C18_USDAY47560_NEG_MSMS_70_At-QsuB6-rcvy-rste_6_Rg90to1350-CE102040-30mg-S1_Run177.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_17091608_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151309981-1576349 Batch7_SNB75_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_0124.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_133_2B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130839549-1877663 13E01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130839549-1877663 13E01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_92.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153917681-1577632 Batch7_UO31_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_Blood1_NEG.mzXML at line 689
attributes construct error, line 38, column 74 (Person4_Blood1_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/003_Ammonia_Day0_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD5_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122147094-1867286 04H07_rep_D_Glibenclamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122147094-1867286 04H07_rep_D_Glibenclamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-033.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-033.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152049902-1576728 Batch1_MDAMB436_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125534827-1863013 03D08_rep_D_Metaraminol_bitartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125534827-1863013 03D08_rep_D_Metaraminol_bitartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113914443-1922695 3_H7_STE2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113914443-1922695 3_H7_STE2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_D3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/coaA_P3D7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (coaA_P3D7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2A05P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151047748-1924731 3_C4_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151047748-1924731 3_C4_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007640_032118-0.01Thr4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201822557-1878092 09H01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201822557-1878092 09H01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNP082_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_H9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A11_id_MSn_negative.mzML at line 21
index 244 is out of bounds for axis 0 with size 244
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150319306-1864749 02B11_rep_B_Nocodazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150319306-1864749 02B11_rep_B_Nocodazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152616436-1868223 06E04_rep_A_Gabazine_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152616436-1868223 06E04_rep_A_Gabazine_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095362/raw/MS2_VcS_3_17_1_7783.mzML at line 689
Premature end of data in tag chromatogramList line 660809, line 660810, column 1 (MS2_VcS_3_17_1_7783.mzML, line 660810)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2H06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153428143-1577391 Batch4_NCIH1666_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNH189_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125205295-1876894 12G10_rep_C_(+,-)-Octopamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125205295-1876894 12G10_rep_C_(+,-)-Octopamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlB2a.mzXML at line 689
expected '>', line 718, column 11 (ExtraControlB2a.mzXML, line 718)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124436185-1862369 03B09_rep_A_Mephenesina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124436185-1862369 03B09_rep_A_Mephenesina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_H1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200837380-1881656 16B10_rep_A_Felbamateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200837380-1881656 16B10_rep_A_Felbamateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_60.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_E2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/feoB_#4_P3D4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (feoB_#4_P3D4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130237425-1877377 13H08_rep_B_Zalcitabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130237425-1877377 13H08_rep_B_Zalcitabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-195_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121631820-1867036 04F04_rep_B_Glafenine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121631820-1867036 04F04_rep_B_Glafenine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125401570-1862937 03A10_rep_D_Hydralazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125401570-1862937 03A10_rep_D_Hydralazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/455.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_A10_id_negative.mzML at line 21
index 221 is out of bounds for axis 0 with size 221
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125130670-1862815 03D01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125130670-1862815 03D01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170125_047EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c3/842b619105a10bc7e8dde66291d965/input_file/MMW5_20170125_047EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEP1_MS_RA4_01_22654.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlich1001R324h3a.mzML at line 689
Opening and ending tag mismatch: binary line 219796 and activation, line 219798, column 28 (pBlich1001R324h3a.mzML, line 219798)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GE10_01_12141.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093001131-1879091 14H09_rep_C_Cefepime_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093001131-1879091 14H09_rep_C_Cefepime_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ4_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_115_2B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/027_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_220.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_3_P_rep_2_B-C8_1_5532.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxL_P3B7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (lpxL_P3B7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112209931-1873577 10A03_rep_D_Isopyrin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112209931-1873577 10A03_rep_D_Isopyrin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090775/peak/converties targeted/SAE6a-t.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample201.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/artP_P3C7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (artP_P3C7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150610131-1864881 02F08_rep_C_Clindamycin hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150610131-1864881 02F08_rep_C_Clindamycin hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093039696-1879117 14D01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093039696-1879117 14D01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pflC_P5A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (pflC_P5A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG06B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ascB_P4G12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (ascB_P4G12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202424432-1878375 10H10_rep_A_Pridinol_methanesulfonate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202424432-1878375 10H10_rep_A_Pridinol_methanesulfonate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122802976-1880093 15D03_rep_D_Mesnab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122802976-1880093 15D03_rep_D_Mesnab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130409884-1877449 13D02_rep_B_Gliquidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130409884-1877449 13D02_rep_B_Gliquidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153056223-1577220 Batch3_SCABER_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E16_id_negative.mzML at line 21
index 273 is out of bounds for axis 0 with size 273
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafTreatedB3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafTreatedB3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150458150-1924430 1_D8_RGT2_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150458150-1924430 1_D8_RGT2_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_59.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_59.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V8_EDTAk2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_5_P_rep_3_B-D6_1_5855.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiB_P4F9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (thiB_P4F9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124344472-1876545 09A07_rep_A_Oxiconazole_Nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124344472-1876545 09A07_rep_A_Oxiconazole_Nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_10_Blank.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_10_Blank.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GB10_01_11842.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150817995-1864980 02H06_rep_D_Paclitaxela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150817995-1864980 02H06_rep_D_Paclitaxela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200801142-1881629 16C04_rep_A_1,8-Dihydroxyanthraquinonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200801142-1881629 16C04_rep_A_1,8-Dihydroxyanthraquinonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyaA_#2_P4G5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (hyaA_#2_P4G5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152357886-1576877 Batch2_NCIH2444_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person12_RBC_youth_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Person12_RBC_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_22.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_22.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/884.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153314451-1868545 06C02_rep_B_Suloctidilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153314451-1868545 06C02_rep_B_Suloctidilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/19072021_Batch07_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153644699-1868713 06C09_rep_C_Roxatidine_Acetate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153644699-1868713 06C09_rep_C_Roxatidine_Acetate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glgX_P4H2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (glgX_P4H2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_007EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/40/8a9a42095c2f3f4a88fd4e3986a4e5/input_file/QC_20170207_007EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152453390-1576921 Batch2_IGROV1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GD8_01_17184.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130533058-1877514 13D03_rep_C_Pizotifen_malateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130533058-1877514 13D03_rep_C_Pizotifen_malateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200925980-1877698 09D03_rep_B_Sumatriptan_succinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200925980-1877698 09D03_rep_B_Sumatriptan_succinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007677_032118-1CRP3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/blank_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202308516-1878315 10E01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202308516-1878315 10E01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GA3_01_17011.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122344978-1867381 04G09_rep_D_Pimozideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122344978-1867381 04G09_rep_D_Pimozideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD5_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dapD_P3G8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (dapD_P3G8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153259529-1577319 Batch5_OVCAR5_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-6-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d3_276_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 33009, column 1 (SysVirol_IFL001_Cal04RG_d3_276_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 33009)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150106912-1864167 02G03_rep_B_Dipyridamolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150106912-1864167 02G03_rep_B_Dipyridamolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J18_id_MSn_negative.mzML at line 21
index 314 is out of bounds for axis 0 with size 314
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample214_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_E5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control237_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control237_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-088_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/128_108_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201747735-1882065 16H07_rep_C_Milnacipran_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201747735-1882065 16H07_rep_C_Milnacipran_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123138781-1875963 08G05_rep_B_Mercaptopurineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123138781-1875963 08G05_rep_B_Mercaptopurineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114227716-1922867 4_E7_STE2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114227716-1922867 4_E7_STE2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092459913-1878855 14A07_rep_B_Repaglinideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092459913-1878855 14A07_rep_B_Repaglinideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007688_032218-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114715828-1875117 12D03_rep_B_Monobenzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114715828-1875117 12D03_rep_B_Monobenzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165904927-2227569 Healthy3.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_A7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mobB_#1_P4G10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (mobB_#1_P4G10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc008_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc008_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124240713-1862277 03D06_rep_A_Asenapine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124240713-1862277 03D06_rep_A_Asenapine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123049957-1867718 05B01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123049957-1867718 05B01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gmk_P4F10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (gmk_P4F10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114234343-1922873 4_B3_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114234343-1922873 4_B3_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151050021-1924733 3_A2_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151050021-1924733 3_A2_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151824607-1576610 Batch3_J82_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_L18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151708989-1925052 4_H2_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151708989-1925052 4_H2_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_D8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_386.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152717373-1577041 Batch2_RERFLCSQ1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165821116-2227528 PAT43.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD2_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_D8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_D8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/12.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113031574-1874356 11E09_rep_B_Iodixanola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113031574-1874356 11E09_rep_B_Iodixanola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hB1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hB1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI5_2_9_1_878.mzML at line 689
Premature end of data in tag binary line 8994644, line 8994644, column 192901 (50130_microPOTS_Rat_Brain_ROI5_2_9_1_878.mzML, line 8994644)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case202_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case202_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Blank_3_B-A1_1_5633.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122655175-1880040 15G10_rep_D_Imiquimoda.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122655175-1880040 15G10_rep_D_Imiquimoda.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I5_id_MSn_negative.mzML at line 21
index 295 is out of bounds for axis 0 with size 295
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112346949-1921927 3_E8_GPR1_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112346949-1921927 3_E8_GPR1_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113743478-1922615 3_B3_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113743478-1922615 3_B3_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_A5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_2_P_rep_2_B-B8_1_5522.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xylG_#1_P4H11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (xylG_#1_P4H11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_C6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_A5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125809299-1863140 04G01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125809299-1863140 04G01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153606015-1868681 06C05_rep_C_Cephalosporanic_acid,_7-aminob.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153606015-1868681 06C05_rep_C_Cephalosporanic_acid,_7-aminob.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152453379-1868159 05D10_rep_D_Dextromethorphan_hydrobromide_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152453379-1868159 05D10_rep_D_Dextromethorphan_hydrobromide_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007565_031718-5CRP1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152047556-1867970 05E02_rep_C_Bambuterol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152047556-1867970 05E02_rep_C_Bambuterol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202048597-1878205 09E04_rep_D_Pempidine_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202048597-1878205 09E04_rep_D_Pempidine_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_133_1C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/495-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130028291-1863255 04A09_rep_A_Clonidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130028291-1863255 04A09_rep_A_Clonidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125349724-1876974 12H04_rep_D_(R)-(+)-Atenololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125349724-1876974 12H04_rep_D_(R)-(+)-Atenololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_131_2A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000091079/raw/NEG_23.mzML at line 689
Opening and ending tag mismatch: binary line 42527 and spectrum, line 42528, column 20 (NEG_23.mzML, line 42528)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_1_P_rep_1_B-C9_1_5848.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007641_032118-0.01Thr6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130801428-1877632 13H10_rep_C_Levocabastine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130801428-1877632 13H10_rep_C_Levocabastine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBacsR37_5h3a.mzML at line 689
Opening and ending tag mismatch: binary line 131510 and scanList, line 131521, column 22 (pBacsR37_5h3a.mzML, line 131521)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_A6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170209_049ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/1f/abcbda7c1ae245c8248b5d317f9e14/input_file/SH7_20170209_049ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_A3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G7_id_MSn_negative.mzML at line 21
index 370 is out of bounds for axis 0 with size 370
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122245002-1867332 04H08_rep_D_Guanethidine_sulfate_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122245002-1867332 04H08_rep_D_Guanethidine_sulfate_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2E02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltP_P3H11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (gltP_P3H11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210115_AD_89.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V2_LH_PSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112323397-1873636 10E02_rep_D_Butambenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112323397-1873636 10E02_rep_D_Butambenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample184_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201801456-1878076 09F10_rep_D_Hexestrola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201801456-1878076 09F10_rep_D_Hexestrola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121926861-1867174 04D10_rep_C_Methylprednisolone,_6-alphaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121926861-1867174 04D10_rep_C_Methylprednisolone,_6-alphaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B1_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151811397-1867845 05C10_rep_C_Ritodrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151811397-1867845 05C10_rep_C_Ritodrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153522151-1577435 Batch4_ASPC1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/656.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_19032112_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D14_id_MSn_positive.mzML at line 21
index 441 is out of bounds for axis 0 with size 441
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trkA_P3F4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (trkA_P3F4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D5_id.mzML at line 21
index 539 is out of bounds for axis 0 with size 539
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121713450-1867069 04D01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121713450-1867069 04D01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample230_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121117917-1879329 14B09_rep_D_Ondansetron_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121117917-1879329 14B09_rep_D_Ondansetron_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009638_IBD200_E18_A1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person1_Plasma_NEG.mzXML at line 689
attributes construct error, line 38, column 74 (Person1_Plasma_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample170.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD2_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_18_Liver_CMC_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 88 (Mouse_18_Liver_CMC_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/016_1000uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D13_id_MSn_negative.mzML at line 21
index 313 is out of bounds for axis 0 with size 313
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009594_IBD200_E15_B10.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_143.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_143.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_A2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S38.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S38.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/914.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike5_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYC001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/61-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153037524-1577206 Batch3_NCIH661_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152811667-1868312 06A01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152811667-1868312 06A01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlD1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlD1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G9_id_MSn_negative.mzML at line 21
index 304 is out of bounds for axis 0 with size 304
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O19_id_MSn_negative.mzML at line 21
index 384 is out of bounds for axis 0 with size 384
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223836404-1870318 01F04_rep_C_Triflupromazine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223836404-1870318 01F04_rep_C_Triflupromazine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample180_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153414557-1577380 Batch5_NCIH1650_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_19040322_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/593.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210324_AD_83.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222808441-1869841 01G05_rep_A_Chlorpromazine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222808441-1869841 01G05_rep_A_Chlorpromazine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114844890-1875188 12E06_rep_B_Thonzonium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114844890-1875188 12E06_rep_B_Thonzonium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-191_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_0126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113851682-1874716 11G06_rep_D_Simvastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113851682-1874716 11G06_rep_D_Simvastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093146955-1879170 14E01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093146955-1879170 14E01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD2_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_G9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152107901-1576742 Batch1_NCIH2030_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113030095-1874355 11G02_rep_B_Gabapentinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113030095-1874355 11G02_rep_B_Gabapentinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102118145-1869789 07A08_rep_D_Daunorubicin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102118145-1869789 07A08_rep_D_Daunorubicin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202130672-1882239 16F06_rep_D_Rasagilinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202130672-1882239 16F06_rep_D_Rasagilinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112423086-1921959 3_G11_GPR1_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112423086-1921959 3_G11_GPR1_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151349333-1576382 Batch6_OVCAR3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113818745-1874689 11B07_rep_C_Suprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113818745-1874689 11B07_rep_C_Suprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125356164-1876979 12D08_rep_D_Flurbiprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125356164-1876979 12D08_rep_D_Flurbiprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/299.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D12_id.mzML at line 21
index 543 is out of bounds for axis 0 with size 543
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEP1_20EV_RA4_01_22655.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130819746-1877647 13A07_rep_C_Sotalol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130819746-1877647 13A07_rep_C_Sotalol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD4_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpMat1_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/livF_P5H11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (livF_P5H11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_72.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_72.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093526/peak/mzML/DIA/Sa02_Water_POS_DIA_30mz.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G6_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR07/withoutKBr/140429pEtDBA.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_E2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/89.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121632967-1867037 04F04_rep_B_Glafenine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121632967-1867037 04F04_rep_B_Glafenine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_84.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L73cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L73cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_02062001_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_55.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroB_P4H7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (aroB_P4H7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124030997-1876389 08D08_rep_D_Temozolomideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124030997-1876389 08D08_rep_D_Temozolomideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_10_leg_skin_RESV_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_10_leg_skin_RESV_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD3_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122706861-1880049 15B07_rep_D_Caffeineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122706861-1880049 15B07_rep_D_Caffeineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/cbasp_pyrC_P4F9_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 634, column 10004401 (cbasp_pyrC_P4F9_Aquity_neg.mzXML, line 634)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glgB_P4B7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (glgB_P4B7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_B18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152725859-1577048 Batch3_KP4_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101651315-1869571 07B09_rep_C_Artemisinina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101651315-1869571 07B09_rep_C_Artemisinina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/003_Ammonia_Day9_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1089.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1843.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1843.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122857500-1880136 15H01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122857500-1880136 15H01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112628790-1874169 11F09_rep_A_Doxazosin_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112628790-1874169 11F09_rep_A_Doxazosin_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_G5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_19032111_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J7_id_MSn_positive.mzML at line 21
index 372 is out of bounds for axis 0 with size 372
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_154.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130103160-1877304 13H11_rep_B_Pyrvinium_pamoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130103160-1877304 13H11_rep_B_Pyrvinium_pamoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114944028-1875236 12F10_rep_B_Iodipamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114944028-1875236 12F10_rep_B_Iodipamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ6_4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100719260-1869116 07D11_rep_A_Sulfasalazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100719260-1869116 07D11_rep_A_Sulfasalazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/007_1029_2_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_D7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_D7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control176_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control176_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007616_032118-Unst3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122314328-1867356 04C07_rep_D_Disopyramidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122314328-1867356 04C07_rep_D_Disopyramidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD2_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007683_032118-1CRP6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121335339-1879431 15D11_rep_A_Lamotrigineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121335339-1879431 15D11_rep_A_Lamotrigineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/011_20uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121656175-1879583 15A10_rep_A_Rifaximinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121656175-1879583 15A10_rep_A_Rifaximinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091038/metadata/miltonsilva/Negative_samples/CA-Ra-P2_Neg.mzML at line 689
Opening and ending tag mismatch: binary line 211599 and binaryDataArray, line 211603, column 31 (CA-Ra-P2_Neg.mzML, line 211603)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150235796-1924312 1_A11_RGT2_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150235796-1924312 1_A11_RGT2_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_C6_id_negative.mzML at line 21
index 276 is out of bounds for axis 0 with size 276
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_122.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150137769-1864672 02C09_rep_B_Nomifensine maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150137769-1864672 02C09_rep_B_Nomifensine maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_09_Blank.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_09_Blank.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113216009-1874436 11F02_rep_B_Paroxetine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113216009-1874436 11F02_rep_B_Paroxetine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O12_id_MSn_negative.mzML at line 21
index 333 is out of bounds for axis 0 with size 333
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114945306-1875237 12F10_rep_B_Iodipamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114945306-1875237 12F10_rep_B_Iodipamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153210104-1577279 Batch4_DMS114_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092451059-1878848 14E07_rep_B_D-cycloserinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092451059-1878848 14E07_rep_B_D-cycloserinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisC_P5C11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (hisC_P5C11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121645017-1867046 04A03_rep_B_Flavoxate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121645017-1867046 04A03_rep_B_Flavoxate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_blank_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_D2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/287.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_A2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170209_041ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/7b/e273afb56baca97d7061542cc109cc/input_file/MMW5_20170209_041ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/007_CRa_H9M5_M470_L01_K2_low_pos.mzXML at line 689
Premature end of data in tag peaks line 11458, line 11462, column 24056 (007_CRa_H9M5_M470_L01_K2_low_pos.mzXML, line 11462)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122202241-1867298 04F09_rep_D_Fipexide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122202241-1867298 04F09_rep_D_Fipexide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201537209-1881966 16D07_rep_C_Fenoldopamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201537209-1881966 16D07_rep_C_Fenoldopamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_C6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092910992-1879051 14H01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092910992-1879051 14H01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_G5_id_negative.mzML at line 21
index 234 is out of bounds for axis 0 with size 234
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pabB_#1_P3E6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (pabB_#1_P3E6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125428054-1877003 12G08_rep_D_Prazosin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125428054-1877003 12G08_rep_D_Prazosin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C12_id_MSn_negative.mzML at line 21
index 305 is out of bounds for axis 0 with size 305
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121647540-1867048 04H01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121647540-1867048 04H01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123724235-1876240 08B06_rep_C_Tenatoprazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123724235-1876240 08B06_rep_C_Tenatoprazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_dilute_190201072023.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201601820-1881985 16H10_rep_C_Desonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201601820-1881985 16H10_rep_C_Desonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112339666-1874034 10H04_rep_D_Cloperastine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112339666-1874034 10H04_rep_D_Cloperastine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GC5_01_11953.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisD_P4E3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (hisD_P4E3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0005_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122923517-1875856 08C11_rep_A_Etretinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122923517-1875856 08C11_rep_A_Etretinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mhpD_P3C12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (mhpD_P3C12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180425_ES_H3K_batch6_repC_41.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152650077-1577018 Batch2_NCIH292_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_A4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092928829-1879065 14A07_rep_C_Repaglinideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092928829-1879065 14A07_rep_C_Repaglinideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172723925-1889932 NNa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201255755-1877851 09A09_rep_B_Nilvadipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201255755-1877851 09A09_rep_B_Nilvadipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_121a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092960/raw/HILIC_plusDDA/HILIC/20221111-JC-471_HILIC_162_01.mzML at line 689
Invalid character: Char 0x0 out of allowed range
, line 19758, column 12992 (20221111-JC-471_HILIC_162_01.mzML, line 19758)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/19072021_Batch07_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_C4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113703415-1874629 11D07_rep_C_Indoprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113703415-1874629 11D07_rep_C_Indoprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124327389-1876531 08D10_rep_D_Celiprolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124327389-1876531 08D10_rep_D_Celiprolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123148494-1875971 08E01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123148494-1875971 08E01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/CORN_AAD2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125149605-1876882 12C04_rep_C_Diloxanide_furoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125149605-1876882 12C04_rep_C_Diloxanide_furoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150621715-1924502 2_A11_RGT2_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150621715-1924502 2_A11_RGT2_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2F02P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_C8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD3_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112253378-1873612 10A05_rep_D_Sulfamethoxypyridazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112253378-1873612 10A05_rep_D_Sulfamethoxypyridazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alaE_P4F1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (alaE_P4F1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202044019-1882203 16B01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202044019-1882203 16B01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152345368-1576867 Batch2_NCIH460_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123621931-1876191 08F07_rep_C_Demecarium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123621931-1876191 08F07_rep_C_Demecarium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086486/ccms_peak/peak/sample/MSplate2_dgkA_b4042_C12_platePN_rep1_HEAT_GEI_0-758_304.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (MSplate2_dgkA_b4042_C12_platePN_rep1_HEAT_GEI_0-758_304.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpH_P4F6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (atpH_P4F6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_C7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_SERUM_V7_CAT.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007678_032118-1CRP4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2H12_160528221327.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H16_id.mzML at line 21
index 527 is out of bounds for axis 0 with size 527
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D2_postFOS_1_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K22_id_MSn_positive.mzML at line 21
index 376 is out of bounds for axis 0 with size 376
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG001C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample142_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GG3_01_17222.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_16061440_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_16092759_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153752078-1868767 06D01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153752078-1868767 06D01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2C09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112925154-1874308 11F04_rep_A_Liothyroninea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112925154-1874308 11F04_rep_A_Liothyroninea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190205_ES_H3K_batch15_repA_169.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101226120-1869360 07A09_rep_B_Dosulepin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101226120-1869360 07A09_rep_B_Dosulepin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_15102101_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_2_RESV_200uM_NEG.mzXML at line 689
attributes construct error, line 38, column 83 (HepG2_2_RESV_200uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/005_Urea_Day17_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_A22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GD1_01_12113.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000093526/peak/mzML/DIA/Blk_Water_POS_DIA_40mz.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ulaF_P4E5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ulaF_P4E5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100733137-1869127 07E01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100733137-1869127 07E01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009520_IBD200_E11_B2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/003_Soil_500mMExtra_1_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample074.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092008379-1878628 13E04_rep_D_Azapropazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092008379-1878628 13E04_rep_D_Azapropazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ5_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-faux (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165840375-2227546 PAT37.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_G4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121255818-1879402 14F02_rep_D_Spaglumic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121255818-1879402 14F02_rep_D_Spaglumic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123716430-1876234 08E05_rep_C_Butenafine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123716430-1876234 08E05_rep_C_Butenafine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C14_id_MSn_positive.mzML at line 21
index 432 is out of bounds for axis 0 with size 432
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121920629-1867169 04E08_rep_C_Oxybutynin_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121920629-1867169 04E08_rep_C_Oxybutynin_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S34.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S34.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190131133720.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_0126_190127160832.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gcvT_P3H2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (gcvT_P3H2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_55.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_94.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/707.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/A1/CNT371_A1_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_103.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122335100-1867373 04A10_rep_D_Bupropion_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122335100-1867373 04A10_rep_D_Bupropion_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_72.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_72.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GD10_01_11876.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_60.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_60.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHD03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153420325-1868597 06A09_rep_B_Butoconazole_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153420325-1868597 06A09_rep_B_Butoconazole_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112957620-1874333 11G09_rep_B_Acetaminophenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112957620-1874333 11G09_rep_B_Acetaminophenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101718031-1869593 07A05_rep_C_Benperidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101718031-1869593 07A05_rep_C_Benperidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152042586-1867966 05F01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152042586-1867966 05F01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control142_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control142_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hC1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hC1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130217905-1877362 13H01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130217905-1877362 13H01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D8_id_MSn_positive.mzML at line 21
index 513 is out of bounds for axis 0 with size 513
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/6_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121614962-1879551 15H06_rep_A_Pravastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121614962-1879551 15H06_rep_A_Pravastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123133933-1867753 05E06_rep_B_Brinzolamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123133933-1867753 05E06_rep_B_Brinzolamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093103296-1879135 14G06_rep_C_Verteporfinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093103296-1879135 14G06_rep_C_Verteporfinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C9_id_MSn_positive.mzML at line 21
index 468 is out of bounds for axis 0 with size 468
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GA3_01_11900.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/966.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ6_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB4G01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114052584-1922782 4_C4_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114052584-1922782 4_C4_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GE3_01_17194.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170125_034EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/89/9f2e0bc941ea302850424dd69c337c/input_file/MMW5_20170125_034EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A8_id_MSn_positive.mzML at line 21
index 682 is out of bounds for axis 0 with size 682
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112155894-1873566 10F06_rep_D_Sulfamethazine_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112155894-1873566 10F06_rep_D_Sulfamethazine_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130134158-1877328 13H09_rep_B_Methyldopate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130134158-1877328 13H09_rep_B_Methyldopate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_G4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/COR1_50EV_RA7_01_22686.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112526340-1922014 4_F1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112526340-1922014 4_F1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201904825-1878124 09H05_rep_D_Isosorbide_dinitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201904825-1878124 09H05_rep_D_Isosorbide_dinitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GC8_01_12105.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P6_id_MSn_positive.mzML at line 21
index 534 is out of bounds for axis 0 with size 534
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A3_id_MSn_negative.mzML at line 21
index 238 is out of bounds for axis 0 with size 238
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argG_P4F7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (argG_P4F7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_106.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112041641-1873027 10E05_rep_C_Furaltadone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112041641-1873027 10E05_rep_C_Furaltadone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091904288-1878578 13C08_rep_D_Pramipexole_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091904288-1878578 13C08_rep_D_Pramipexole_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150029706-1864138 02G05_rep_B_Loperamide hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150029706-1864138 02G05_rep_B_Loperamide hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101506692-1869488 07E04_rep_C_Miglitolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101506692-1869488 07E04_rep_C_Miglitolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112501798-1874100 10C08_rep_D_Aprepitanta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112501798-1874100 10C08_rep_D_Aprepitanta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086252/ccms_peak/PF077_pos/200728_LQ_PPF077_446063Z01_C12_pos.mzML at line 689
Extra content at the end of the document, line 632834, column 1 (200728_LQ_PPF077_446063Z01_C12_pos.mzML, line 632834)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152212222-1576793 Batch2_NCIH441_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pyrB_P4F11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (pyrB_P4F11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100349041-1868947 06G07_rep_D_Efavirenza.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100349041-1868947 06G07_rep_D_Efavirenza.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case56_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case56_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151826969-1576612 Batch3_NCIH2228_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152646873-1868247 06H04_rep_A_Cefotetanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152646873-1868247 06H04_rep_A_Cefotetanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084666/raw/InterSpec_SppSwarms/01316geniam.mzXML at line 689
Premature end of data in tag peaks line 2450, line 2450, column 4317 (01316geniam.mzXML, line 2450)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114144267-1874855 11H05_rep_D_Theobromineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114144267-1874855 11H05_rep_D_Theobromineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_C11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153044383-1868428 06B04_rep_B_Carbarsonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153044383-1868428 06B04_rep_B_Carbarsonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007503_031618-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_plasma_1h_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer2_plasma_1h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153742765-1577552 Batch6_MDAMB435S_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ytfR_P3C4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (ytfR_P3C4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113011434-1922227 1_F1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113011434-1922227 1_F1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125324524-1862907 03C03_rep_C_Levamisole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125324524-1862907 03C03_rep_C_Levamisole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111529798-1871532 10F03_rep_B_Leflunomideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111529798-1871532 10F03_rep_B_Leflunomideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114027507-1874793 11A01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114027507-1874793 11A01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152919386-1577144 Batch3_ACHN_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101323460-1869406 07C09_rep_B_Acenocoumarolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101323460-1869406 07C09_rep_B_Acenocoumarolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/adipic_acid_neg.mzXML at line 689
Premature end of data in tag peaks line 6567, line 6571, column 15851 (adipic_acid_neg.mzXML, line 6571)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D5_id_negative.mzML at line 21
index 269 is out of bounds for axis 0 with size 269
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_115.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_E4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125124667-1862810 03G10_rep_C_Nefopam_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125124667-1862810 03G10_rep_C_Nefopam_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112846479-1874278 11E02_rep_A_Olanzapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112846479-1874278 11E02_rep_A_Olanzapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yejA_P6E9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (yejA_P6E9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190334215-1889797 Nb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151743835-1576577 Batch3_NCIH2228_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cfa_#3_P4B7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (cfa_#3_P4B7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/358.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person14_plasma_youth_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person14_plasma_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092925080-1879062 14E06_rep_C_Topiramatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092925080-1879062 14E06_rep_C_Topiramatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091934803-1878602 13B10_rep_D_Ozagrel_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091934803-1878602 13B10_rep_D_Ozagrel_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096035/peak/Brain/B3xtg_147.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000096035/peak/Brain/B3xtg_147.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA16.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153733273-1868752 06B10_rep_C_Bisacodyla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153733273-1868752 06B10_rep_C_Bisacodyla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample039.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153215063-1577283 Batch4_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GB8_01_11917.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190123172544.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082735/ccms_peak/ST000664/EX00347-lipidomics/Raw data/POS/BATCH2/20150323_Authentic.mzXML at line 689
Extra content at the end of the document, line 50282, column 1 (20150323_Authentic.mzXML, line 50282)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_C2_id_positive.mzML at line 21
index 341 is out of bounds for axis 0 with size 341
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F7_id.mzML at line 21
index 477 is out of bounds for axis 0 with size 477
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_C2_id_positive.mzML at line 21
index 342 is out of bounds for axis 0 with size 342
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/888-B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_66.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GH7_01_17000.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dcuC_#3_P4D10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (dcuC_#3_P4D10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151439509-1924931 4_C1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151439509-1924931 4_C1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_F4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202113781-1882226 16F03_rep_D_Indinavir_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202113781-1882226 16F03_rep_D_Indinavir_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LEA1_50EV_RA8_01_22695.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ2_5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121730607-1879609 15G04_rep_B_Gemcitabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121730607-1879609 15G04_rep_B_Gemcitabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113620307-1874594 11F01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113620307-1874594 11F01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_1_RESV_200uM_NEG.mzXML at line 689
attributes construct error, line 38, column 83 (C2C12_1_RESV_200uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091854063-1878570 13E11_rep_D_Lodoxamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091854063-1878570 13E11_rep_D_Lodoxamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1B01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165703227-2227457 Healthy1.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114821750-1875169 12F01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114821750-1875169 12F01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ3_7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201757799-1882073 16H04_rep_C_Raltitrexeda.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201757799-1882073 16H04_rep_C_Raltitrexeda.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0033_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0033_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case98_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case98_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222756731-1869832 01F09_rep_A_Oxethazaineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222756731-1869832 01F09_rep_A_Oxethazaineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/caiB_P3A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (caiB_P3A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121119132-1879330 14E09_rep_D_(+,-)-Synephrinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121119132-1879330 14E09_rep_D_(+,-)-Synephrinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OAW5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GB1_01_16790.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122832610-1875816 08F10_rep_A_Diflorasone_Diacetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122832610-1875816 08F10_rep_A_Diflorasone_Diacetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_G3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E7_id_MSn_positive.mzML at line 21
index 473 is out of bounds for axis 0 with size 473
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_46.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_46.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152914685-1577140 Batch5_HOP92_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L62.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L62.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153505548-1868633 06D05_rep_C_Cefadroxilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153505548-1868633 06D05_rep_C_Cefadroxilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/931.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/60-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122541652-1879983 15G01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122541652-1879983 15G01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E21_id_MSn_negative.mzML at line 21
index 300 is out of bounds for axis 0 with size 300
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150909548-1865020 02F11_rep_D_Tetracycline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150909548-1865020 02F11_rep_D_Tetracycline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121706641-1879591 15A01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121706641-1879591 15A01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/014_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151457557-1576439 Batch6_NCIH1838_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/clcB_P3G9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (clcB_P3G9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_23_RIN_53.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_23_RIN_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000088606/peak/210116_AR_05_AGE017_H11_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007680_032118-1CRP4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET73.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET73.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170125_063EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a9/49e3722337b4fa99a7920988da1d87/input_file/MMW3_20170125_063EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091807055-1878532 13H02_rep_D_Halofantrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091807055-1878532 13H02_rep_D_Halofantrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_6_Blood_HO_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 86 (Mouse_6_Blood_HO_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD5_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150330911-1864758 02H08_rep_B_Gallamine triethiodidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150330911-1864758 02H08_rep_B_Gallamine triethiodidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/081_79.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122754827-1867583 05H02_rep_A_Terbutaline_hemisulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122754827-1867583 05H02_rep_A_Terbutaline_hemisulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/FIL1_40EV_RA1_01_22631.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100950032-1869235 07E01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100950032-1869235 07E01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/464-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A8_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_D9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_5_1_rep_1_B-C8_1_5660.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_75.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094619/peak/Mzml/YukIE_020723_lysate_SF16.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124601529-1876652 09C09_rep_A_Acitretina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124601529-1876652 09C09_rep_A_Acitretina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202003074-1878169 09H07_rep_D_Pramoxine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202003074-1878169 09H07_rep_D_Pramoxine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153617630-1577481 Batch5_HT29_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223829352-2227661 PAT45.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_D9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201221799-1877826 09E07_rep_B_Tigecyclinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201221799-1877826 09E07_rep_B_Tigecyclinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hpt_P3B12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (hpt_P3B12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G12_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD5_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yecS_P3B1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (yecS_P3B1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114210912-1922852 4_E11_STE2_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114210912-1922852 4_E11_STE2_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B19_id_MSn_negative.mzML at line 21
index 303 is out of bounds for axis 0 with size 303
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113914267-1874734 11H09_rep_D_Ioversola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113914267-1874734 11H09_rep_D_Ioversola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123919168-1876332 08B01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123919168-1876332 08B01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121527744-1866986 04G10_rep_B_Amodiaquin_dihydrochloride_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121527744-1866986 04G10_rep_B_Amodiaquin_dihydrochloride_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123009041-1867689 05D09_rep_B_Pemirolast_potassiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123009041-1867689 05D09_rep_B_Pemirolast_potassiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_C9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD5_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009519_IBD200_E11_A1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130006878-1877264 13C09_rep_A_Norgestimateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130006878-1877264 13C09_rep_A_Norgestimateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/prlp_hisF_P3C3_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (prlp_hisF_P3C3_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.MG1_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120925052-1879244 14F03_rep_D_Ranolazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120925052-1879244 14F03_rep_D_Ranolazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123116201-1867739 05C07_rep_B_Maprotiline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123116201-1867739 05C07_rep_B_Maprotiline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125002944-1862745 03B05_rep_C_Alverine_citrate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125002944-1862745 03B05_rep_C_Alverine_citrate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_C9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170207_058EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/5b/36eb55d43975ad35785fe5bc16884a/input_file/SH10_20170207_058EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O9_id_MSn_negative.mzML at line 21
index 366 is out of bounds for axis 0 with size 366
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike4_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/esculetin_neg.mzXML at line 689
Premature end of data in tag peaks line 7207, line 7211, column 69106 (esculetin_neg.mzXML, line 7211)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130330051-1877418 13A03_rep_B_Canrenoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130330051-1877418 13A03_rep_B_Canrenoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122414693-1879916 15F04_rep_C_Azithromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122414693-1879916 15F04_rep_C_Azithromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121433036-1879475 15C05_rep_A_Carprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121433036-1879475 15C05_rep_A_Carprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083181.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD3_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/DEX-plasma-VLDL-14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/234.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125107947-1862797 03D02_rep_C_Midodrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125107947-1862797 03D02_rep_C_Midodrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111342719-1871450 10C05_rep_B_Flunixin_meglumineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111342719-1871450 10C05_rep_B_Flunixin_meglumineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/932.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/PED1_40EV_RA5_01_22667.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_G8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nikE_P4A8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (nikE_P4A8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_low (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_133_2B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_blank_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30165 - GI-18-011.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/24_D24062013T2306_1399CBU_0008_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101412432-1869445 07F10_rep_C_Thiocolchicosidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101412432-1869445 07F10_rep_C_Thiocolchicosidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/206-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_blood_24h_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Volunteer3_blood_24h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152728287-1577050 Batch1_HCC15_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223854342-2227683 PAT48.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_sample12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124553140-1862546 03C02_rep_B_Ampyronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124553140-1862546 03C02_rep_B_Ampyronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150945835-1924678 2_A5_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150945835-1924678 2_A5_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093150622-1879173 14B10_rep_C_Propoxycaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093150622-1879173 14B10_rep_C_Propoxycaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123818632-1876283 08E09_rep_C_Oxibendazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123818632-1876283 08E09_rep_C_Oxibendazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_16061440_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GF9_01_17091.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_136b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_C8_id_MSn_positive_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201444622-1881930 16B05_rep_C_Tegaserod_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201444622-1881930 16B05_rep_C_Tegaserod_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151312446-1924856 3_B5_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151312446-1924856 3_B5_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.grif_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112315698-1873630 10A07_rep_D_Mephentermine_hemisulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112315698-1873630 10A07_rep_D_Mephentermine_hemisulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153800848-1868774 06C06_rep_C_Chicago_sky_blue_6Ba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153800848-1868774 06C06_rep_C_Chicago_sky_blue_6Ba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GB2_01_17024.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122746587-1880080 15C09_rep_D_Cladribinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122746587-1880080 15C09_rep_D_Cladribinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_106.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100639536-1869083 07D01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100639536-1869083 07D01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purB_P4B7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (purB_P4B7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_D8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yfbT_P3C2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (yfbT_P3C2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122628498-1867513 05G01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122628498-1867513 05G01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1D09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113214363-1922330 1_G3_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113214363-1922330 1_G3_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_102.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125907703-1877218 13C06_rep_A_Guaiacolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125907703-1877218 13C06_rep_A_Guaiacolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD2_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Negative FGF1_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E24_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151724728-1576561 Batch7_SKMEL2_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121946963-1879712 15F10_rep_B_Nalmefene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121946963-1879712 15F10_rep_B_Nalmefene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_04_076_prot_34_IMS_12Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M3_id.mzML at line 21
index 520 is out of bounds for axis 0 with size 520
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_131_1C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_107.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122833512-1880117 15A03_rep_D_Anastrozoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122833512-1880117 15A03_rep_D_Anastrozoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201656660-1878027 09F06_rep_C_Venlafaxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201656660-1878027 09F06_rep_C_Venlafaxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201036949-1877750 09G09_rep_B_Benzethonium_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201036949-1877750 09G09_rep_B_Benzethonium_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123039217-1867710 05A09_rep_B_Zoxazolaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123039217-1867710 05A09_rep_B_Zoxazolaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124224946-1876480 08A10_rep_D_Entacaponea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124224946-1876480 08A10_rep_D_Entacaponea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130556455-1877533 13G02_rep_C_Isradipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130556455-1877533 13G02_rep_C_Isradipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_115_1A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S005_0124_190125005843.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1065.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145758326-1864018 02F05_rep_A_Diltiazem hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145758326-1864018 02F05_rep_A_Diltiazem hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdpA_#2_P4G5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (kdpA_#2_P4G5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121516065-1879506 15B09_rep_A_Methenaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121516065-1879506 15B09_rep_A_Methenaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101700846-1869579 07A01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101700846-1869579 07A01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113820007-1874690 11A01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113820007-1874690 11A01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/179-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125012901-1876811 12D08_rep_C_Flurbiprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125012901-1876811 12D08_rep_C_Flurbiprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152052362-1576730 Batch1_NCIH1975_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122246195-1867333 04H08_rep_D_Guanethidine_sulfate_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122246195-1867333 04H08_rep_D_Guanethidine_sulfate_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095819/raw/202312_215_PA09_10ppb_1uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fecE_P3E12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (fecE_P3E12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A13_id_MSn_positive.mzML at line 21
index 661 is out of bounds for axis 0 with size 661
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113138587-1922299 1_D3_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113138587-1922299 1_D3_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_C1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murC_P4C7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (murC_P4C7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124318526-1862307 03B01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124318526-1862307 03B01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OW4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ansB_#2_P4E10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (ansB_#2_P4E10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122712072-1867548 05E01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122712072-1867548 05E01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088606/ccms_peak/210116_AR_03_AGE016_D04_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1G06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA15.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201245385-1881840 16H10_rep_B_Desonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201245385-1881840 16H10_rep_B_Desonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0039_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223137161-1869998 01C03_rep_B_Panthenol (D)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223137161-1869998 01C03_rep_B_Panthenol (D)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_F5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113528555-1874553 11G10_rep_C_Phthalylsulfathiazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113528555-1874553 11G10_rep_C_Phthalylsulfathiazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153824471-1577587 Batch7_NCIH441_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES223.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-016.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-016.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145559346-1863922 02A06_rep_A_Baclofen (R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145559346-1863922 02A06_rep_A_Baclofen (R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/837.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case211_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case211_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123303892-1876031 08F11_rep_B_Acamprosate_calciumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123303892-1876031 08F11_rep_B_Acamprosate_calciumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample165_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/1H-indole-1-acetic_acid.mzXML at line 689
Premature end of data in tag peaks line 7287, line 7291, column 89585 (1H-indole-1-acetic_acid.mzXML, line 7291)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gnd_P3D12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (gnd_P3D12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152800953-1868304 06A03_rep_A_Haloprogina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152800953-1868304 06A03_rep_A_Haloprogina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114108372-1922796 4_D11_STE2_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114108372-1922796 4_D11_STE2_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111333402-1871443 10A05_rep_B_Sulfamethoxypyridazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111333402-1871443 10A05_rep_B_Sulfamethoxypyridazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152356651-1576876 Batch2_NCIH2444_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083351/ccms_peak/BAs Animals one group/Desktop/WirelessDiagnostics-C02MR6WTG086-20160515121338/UserDiagnosticReports/.com.apple.WebKit.Networking_2016-04-22-114407_Ninas-MacBook-Air-3.crash.plist at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O21_id_MSn_negative.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153058851-1577222 Batch3_MIAPACA2_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ndh_P3G5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (ndh_P3G5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/692.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152302696-1576833 Batch2_NCIH2122_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1K009.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190128_ES_H3K_batch15_repC_224.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121722095-1867076 04E01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121722095-1867076 04E01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1511.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1511.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/012_CRa_H9M5_M470_C01_K1_low_pos.mzXML at line 689
Premature end of data in tag peaks line 12864, line 12868, column 24055 (012_CRa_H9M5_M470_C01_K1_low_pos.mzXML, line 12868)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122837201-1880120 15D11_rep_D_Lamotriginea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122837201-1880120 15D11_rep_D_Lamotriginea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151056121-1865103 02H04_rep_D_Didanosineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151056121-1865103 02H04_rep_D_Didanosineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_high (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153911854-1577627 Batch6_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1B07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1457.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1457.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C20_id_MSn_negative.mzML at line 21
index 304 is out of bounds for axis 0 with size 304
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GH7_01_17117.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202212506-1882272 16F07_rep_D_Flumethasone_pivalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202212506-1882272 16F07_rep_D_Flumethasone_pivalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151136992-1865135 02A07_rep_D_Acyclovirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151136992-1865135 02A07_rep_D_Acyclovirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C8_id_MSn_positive.mzML at line 21
index 505 is out of bounds for axis 0 with size 505
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122852914-1867629 05H03_rep_A_Ketanserin_tartrate_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122852914-1867629 05H03_rep_A_Ketanserin_tartrate_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122503130-1879953 15E05_rep_C_Ethinylestradiolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122503130-1879953 15E05_rep_C_Ethinylestradiolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/20221212_carryover_test_noISTD_PLASMA_sample06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltX_#4_P4E8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (gltX_#4_P4E8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145546953-1863912 02C01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145546953-1863912 02C01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I11_id_MSn_negative.mzML at line 21
index 341 is out of bounds for axis 0 with size 341
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223926578-1870357 01F10_rep_C_Pheniramine maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223926578-1870357 01F10_rep_C_Pheniramine maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153430541-1577393 Batch4_NCIH1869_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092936231-1879071 14E11_rep_C_Homosalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092936231-1879071 14E11_rep_C_Homosalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201617981-1877998 09A01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201617981-1877998 09A01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152859395-1577127 Batch5_HOP92_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092738248-1878978 14D05_rep_B_Cyproterone_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092738248-1878978 14D05_rep_B_Cyproterone_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/652.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6B01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092706039-1878953 14B09_rep_B_Ondansetron_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092706039-1878953 14B09_rep_B_Ondansetron_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/146_118.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122627275-1867512 05G01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122627275-1867512 05G01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092904592-1879046 14A06_rep_C_Sertaconazole_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092904592-1879046 14A06_rep_C_Sertaconazole_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122239696-1867328 04C11_rep_D_Fendiline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122239696-1867328 04C11_rep_D_Fendiline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B21_id.mzML at line 21
index 504 is out of bounds for axis 0 with size 504
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/astD_P3E4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (astD_P3E4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2E06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person10_RBC_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Person10_RBC_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123828557-1876291 08A09_rep_C_Acarboseb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123828557-1876291 08A09_rep_C_Acarboseb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_A_2.mzXML at line 689
Premature end of data in tag peaks line 2666, line 2670, column 15848 (L_A_2.mzXML, line 2670)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hcaD_P3B11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (hcaD_P3B11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201558806-1877984 09A09_rep_C_Nilvadipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201558806-1877984 09A09_rep_C_Nilvadipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180901_ES_H3K_batch1_repA_7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR07/WithKBr/140311P7.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201627196-1882004 16B09_rep_C_Altrenogestb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201627196-1882004 16B09_rep_C_Altrenogestb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample097.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223938076-1870366 01C09_rep_C_Ethambutol dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223938076-1870366 01C09_rep_C_Ethambutol dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBsubR231_5h2b.mzML at line 689
Opening and ending tag mismatch: binary line 175300 and spectrum, line 175335, column 20 (pBsubR231_5h2b.mzML, line 175335)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_197.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_P_E3E3_C_31Jan18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113258531-1922368 1_B10_IZH2_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113258531-1922368 1_B10_IZH2_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092504695-1878859 14A03_rep_B_Tridihexethyl_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092504695-1878859 14A03_rep_B_Tridihexethyl_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E18_id.mzML at line 21
index 574 is out of bounds for axis 0 with size 574
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152839823-1868334 06B04_rep_A_Carbarsonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152839823-1868334 06B04_rep_A_Carbarsonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH54.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220222_LKM_MouseBrain_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_C5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Blank_pesticide_Swabs_170403125359.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ugd_P3A8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (ugd_P3A8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_54_AC+_48.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ascF_#1_P3B2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ascF_#1_P3B2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113556043-1874575 11B11_rep_C_Aminophyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113556043-1874575 11B11_rep_C_Aminophyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fucA_P3A3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (fucA_P3A3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123848232-1876307 08C04_rep_C_Papaverine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123848232-1876307 08C04_rep_C_Papaverine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_48_RIN_25.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_48_RIN_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/400.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007615_032118-Unst3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GE9_01_11693.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R23h1a.mzML at line 689
Opening and ending tag mismatch: binary line 42316 and binaryDataArray, line 42321, column 31 (pBlichMO17R23h1a.mzML, line 42321)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092323099-1878780 14C02_rep_A_Phensuximidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092323099-1878780 14C02_rep_A_Phensuximidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_A6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_A6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1365.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1365.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114539178-1875043 12H01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114539178-1875043 12H01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD4_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GD12_01_16955.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114347259-1922938 4_D4_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114347259-1922938 4_D4_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM4M003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082913/ccms_peak/15NEGMSMS5_10_15eV.mzML at line 689
Premature end of data in tag binary line 3882, line 3882, column 618480 (15NEGMSMS5_10_15eV.mzML, line 3882)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample092_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153515927-1577430 Batch4_977_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153625997-1577488 Batch4_184A1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/XYT-47d.mzXML at line 689
Premature end of data in tag msRun line 5, line 4811, column 1 (XYT-47d.mzXML, line 4811)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223520056-1870167 01D05_rep_B_Triamterenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223520056-1870167 01D05_rep_B_Triamterenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165710890-2227464 PAT35.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223425372-1870125 01D10_rep_B_Diflunisala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223425372-1870125 01D10_rep_B_Diflunisala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N22_id_MSn_positive.mzML at line 21
index 662 is out of bounds for axis 0 with size 662
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD3_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114739243-1875135 12D10_rep_B_Bacitracinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114739243-1875135 12D10_rep_B_Bacitracinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E15_id_MSn_negative.mzML at line 21
index 332 is out of bounds for axis 0 with size 332
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/003_Ammonia_Day9_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095819/raw/202312_217_PA11_10ppb_1uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130414967-1877453 13G03_rep_B_Nifekalanta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130414967-1877453 13G03_rep_B_Nifekalanta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153646475-1577505 Batch4_SW1573_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1G03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_17.mzXML at line 689
Premature end of data in tag peaks line 20099, line 20103, column 3654 (20121114_17.mzXML, line 20103)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0045_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0045_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092044849-1878656 14F02_rep_A_Spaglumic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092044849-1878656 14F02_rep_A_Spaglumic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1058.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111422016-1871480 10H01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111422016-1871480 10H01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007659_032118-1Thr4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F6_id_MSn_negative.mzML at line 21
index 314 is out of bounds for axis 0 with size 314
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/4-hydroxybenzoic_acid_neg.mzXML at line 689
Premature end of data in tag peaks line 5727, line 5731, column 24045 (4-hydroxybenzoic_acid_neg.mzXML, line 5731)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112529787-1874122 10D01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112529787-1874122 10D01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/378.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201229517-1881828 16B01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201229517-1881828 16B01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_F4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/424.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person11_plasma_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person11_plasma_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_37_Blank.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_37_Blank.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122436192-1879932 15B08_rep_C_Carvedilola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122436192-1879932 15B08_rep_C_Carvedilola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/306.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_46.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_46.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wecG_P3E6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (wecG_P3E6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150649854-1924526 2_D4_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150649854-1924526 2_D4_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224258936-1870521 01G04_rep_D_Nifedipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224258936-1870521 01G04_rep_D_Nifedipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_D1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152830126-1577102 Batch3_HT1197_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153741524-1577551 Batch6_NCIH82_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET78.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET78.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD2_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223125416-1869989 01B08_rep_A_Levodopaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223125416-1869989 01B08_rep_A_Levodopaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/030_CRa_H9M5_M470_C14_K1_high_pos.mzXML at line 689
Premature end of data in tag peaks line 18583, line 18587, column 28151 (030_CRa_H9M5_M470_C14_K1_high_pos.mzXML, line 18587)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202135855-1882243 16B07_rep_D_Tegafura.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202135855-1882243 16B07_rep_D_Tegafura.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narZ_#1_P4H7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (narZ_#1_P4H7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D17_id_MSn_negative.mzML at line 21
index 337 is out of bounds for axis 0 with size 337
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ulaA_#2_P5F7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ulaA_#2_P5F7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115007831-1875255 12B05_rep_B_Butylparabenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115007831-1875255 12B05_rep_B_Butylparabenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aphA_P4B11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (aphA_P4B11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152207198-1576789 Batch1_HCC70_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/epmB_P3A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (epmB_P3A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_0126_190128155050.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col2_JX_04102015_150413142135.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210325_AD_82.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123350380-1876069 08A07_rep_B_Eserine_hemisulfate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123350380-1876069 08A07_rep_B_Eserine_hemisulfate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case148_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case148_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092711134-1878957 14F07_rep_B_Estriolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092711134-1878957 14F07_rep_B_Estriolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150025690-1864135 02H09_rep_B_Neomycin sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150025690-1864135 02H09_rep_B_Neomycin sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124310532-1876517 08C07_rep_D_Alfacalcidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124310532-1876517 08C07_rep_D_Alfacalcidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ1_2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130053577-1863276 04A11_rep_A_Alprenolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130053577-1863276 04A11_rep_A_Alprenolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201846508-1878110 09A09_rep_D_Nilvadipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201846508-1878110 09A09_rep_D_Nilvadipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007615_032118-Unst3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/2pg_eno_P3D2_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024913 (2pg_eno_P3D2_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case81_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case81_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152652521-1577020 Batch1_NCIH1299_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ04251528.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dcuB_P4C1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (dcuB_P4C1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_0123_190123202826.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d3_280_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 39408, column 1 (SysVirol_IFT001_1918_d3_280_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 39408)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-036_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152051155-1576729 Batch1_MDAMB436_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hA2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hA2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120901265-1879226 14C04_rep_D_Naftifine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120901265-1879226 14C04_rep_D_Naftifine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_50_NOR_20.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_50_NOR_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150729244-1864942 02E09_rep_C_Spironolactonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150729244-1864942 02E09_rep_C_Spironolactonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113528516-1922499 2_G4_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113528516-1922499 2_G4_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223719139-1870258 01F06_rep_C_Acetohexamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223719139-1870258 01F06_rep_C_Acetohexamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122905635-1867639 05B09_rep_A_N6-methyladenosineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122905635-1867639 05B09_rep_A_N6-methyladenosineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J22_id_negative.mzML at line 21
index 269 is out of bounds for axis 0 with size 269
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample188_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111905186-1921684 2_C10_GAP1_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111905186-1921684 2_C10_GAP1_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113556675-1922523 2_G2_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113556675-1922523 2_G2_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OW5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3C12_160530132339.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091810979-1878535 13E08_rep_D_Fursultiamine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091810979-1878535 13E08_rep_D_Fursultiamine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frdD_#1_P6F7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (frdD_#1_P6F7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007517_031618-0.01Thr6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3C02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224229546-1870498 01G02_rep_D_Morantel tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224229546-1870498 01G02_rep_D_Morantel tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mppA_P4E2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (mppA_P4E2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample160_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130534259-1877515 13E05_rep_C_Meptazinol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130534259-1877515 13E05_rep_C_Meptazinol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111628716-1871577 10G07_rep_B_Methimazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111628716-1871577 10G07_rep_B_Methimazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124150203-1876452 08A07_rep_D_Eserine_hemisulfate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124150203-1876452 08A07_rep_D_Eserine_hemisulfate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample034.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P5_id.mzML at line 21
index 562 is out of bounds for axis 0 with size 562
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike5_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD3_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD5_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P22_id_MSn_negative.mzML at line 21
index 366 is out of bounds for axis 0 with size 366
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091655161-1878475 13F09_rep_D_Alprostadilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091655161-1878475 13F09_rep_D_Alprostadilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150544583-1924470 1_H5_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150544583-1924470 1_H5_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100939779-1869227 07B10_rep_A_Propafenone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100939779-1869227 07B10_rep_A_Propafenone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201146640-1881796 16C11_rep_B_Azatadine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201146640-1881796 16C11_rep_B_Azatadine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121001697-1879272 14G04_rep_D_4-aminosalicylic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121001697-1879272 14G04_rep_D_4-aminosalicylic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F1_id_negative.mzML at line 21
index 266 is out of bounds for axis 0 with size 266
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/4.3_4OI.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/284.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114324530-1922918 4_H1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114324530-1922918 4_H1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114931724-1875226 12D02_rep_B_(+)-Isoproterenol_(+)-bitartrate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114931724-1875226 12D02_rep_B_(+)-Isoproterenol_(+)-bitartrate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIAJ09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A7_id_MSn_positive_20240408141622.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150940385-1865044 02C07_rep_D_Nicorandila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150940385-1865044 02C07_rep_D_Nicorandila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125512544-1862995 03B10_rep_D_Phenformin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125512544-1862995 03B10_rep_D_Phenformin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150858016-1865011 02E01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150858016-1865011 02E01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD2_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145705256-1863975 02B05_rep_A_Azathioprinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145705256-1863975 02B05_rep_A_Azathioprinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_20_male_2022_1017_Michael_neg-0.0044.mzML at line 689
Premature end of data in tag binary line 19085, line 19085, column 7399 (4_20_male_2022_1017_Michael_neg-0.0044.mzML, line 19085)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/A1/CNT371_A1_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112658631-1922095 4_E8_GPR1_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112658631-1922095 4_E8_GPR1_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122733738-1880070 15G11_rep_D_Fosinoprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122733738-1880070 15G11_rep_D_Fosinoprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpTen3_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_2_RESV_200uM_NEG.mzXML at line 689
attributes construct error, line 38, column 83 (C2C12_2_RESV_200uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_21_CNR_52.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_21_CNR_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gpr_P3G11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (gpr_P3G11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130044946-1877290 13A01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130044946-1877290 13A01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/934-B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_26_CNR_54.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_26_CNR_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K20_id_MSn_negative.mzML at line 21
index 362 is out of bounds for axis 0 with size 362
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113923362-1922703 3_C5_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113923362-1922703 3_C5_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_RBC_24h_NEG.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer3_RBC_24h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/PDI-flfl-plasma-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091722971-1878497 13B06_rep_D_Naftopidil_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091722971-1878497 13B06_rep_D_Naftopidil_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M9_id_MSn_negative.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6C12_160603023320.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHL07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_E12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_284_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153040451-1577208 Batch3_BTFC905_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD3_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/napA_P3G8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (napA_P3G8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H20_id_MSn_positive.mzML at line 21
index 674 is out of bounds for axis 0 with size 674
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI6_1_3_1_872.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD6_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person09_RBC_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Person09_RBC_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_117b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151306422-1576346 Batch7_CHAGOK1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N9_id_MSn_positive.mzML at line 21
index 365 is out of bounds for axis 0 with size 365
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124255799-1862289 03C10_rep_A_Aminopurine,_6-benzyla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124255799-1862289 03C10_rep_A_Aminopurine,_6-benzyla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152921806-1577146 Batch3_HT1376_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A10_id_MSn_positive_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlich1001R23h1a.mzML at line 689
Specification mandates value for attribute valueOhAdE3owHRIaVB0TcmwdE5eEHRMQDCETwCwhErTIIRPJZCESvXghEfJIIRASXCES8oAhE, line 43280, column 155 (pBlich1001R23h1a.mzML, line 43280)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112303657-1921889 3_B9_GPR1_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112303657-1921889 3_B9_GPR1_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153804415-1577570 Batch6_SF268_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201524412-1877958 09A10_rep_C_Etanidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201524412-1877958 09A10_rep_C_Etanidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223237244-1870043 01D01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223237244-1870043 01D01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113611340-1874587 11F07_rep_C_Tolmetin_sodium_salt_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113611340-1874587 11F07_rep_C_Tolmetin_sodium_salt_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH59.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_162.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD5_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152754681-1577072 Batch1_769P_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114006441-1874776 11E11_rep_D_Equilina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114006441-1874776 11E11_rep_D_Equilina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yeaP_P4A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (yeaP_P4A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNT302_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GA9_01_11830.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153343425-1868568 06C03_rep_B_Zotepinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153343425-1868568 06C03_rep_B_Zotepinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122929421-1867658 05F11_rep_B_Clebopride_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122929421-1867658 05F11_rep_B_Clebopride_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100435828-1868984 06D07_rep_D_Digitoxigeninb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100435828-1868984 06D07_rep_D_Digitoxigeninb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085888/peak/peak/Geissoschizine.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/249.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151644585-1925032 4_F1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151644585-1925032 4_F1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101054481-1869287 07H02_rep_B_Hexetidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101054481-1869287 07H02_rep_B_Hexetidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_F4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_E5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tehB_P4G1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (tehB_P4G1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/697.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glsB_P4E11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (glsB_P4E11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111549024-1871547 10D06_rep_B_Piperacillin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111549024-1871547 10D06_rep_B_Piperacillin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097681/peak/amino acids/030521-b1-OV-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB1B09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_95.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM2E001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1012.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.ros_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_08P_C2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101058340-1869290 07G03_rep_B_Probenecidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101058340-1869290 07G03_rep_B_Probenecidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151527305-1924969 4_D7_SNF3_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151527305-1924969 4_D7_SNF3_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_blood_0h_POS.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer4_blood_0h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E15_id_MSn_negative.mzML at line 21
index 306 is out of bounds for axis 0 with size 306
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151445717-1576429 Batch6_MOLT4_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153725962-1577538 Batch5_HT29_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122251196-1867337 04B01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122251196-1867337 04B01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180428_ES_H3K_batch3_repB_36.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130506370-1877493 13A03_rep_C_Canrenonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130506370-1877493 13A03_rep_C_Canrenonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2C04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151332676-1576368 Batch6_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125016771-1876814 12F06_rep_C_(-)-MK_801_hydrogen_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125016771-1876814 12F06_rep_C_(-)-MK_801_hydrogen_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100852901-1869190 07H09_rep_A_Gliclazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100852901-1869190 07H09_rep_A_Gliclazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114806914-1875157 12E05_rep_B_Rolipramb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114806914-1875157 12E05_rep_B_Rolipramb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153027696-1577199 Batch3_BTFC905_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112011313-1872618 10C09_rep_C_Monensin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112011313-1872618 10C09_rep_C_Monensin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123106507-1875937 08B05_rep_A_Dacarbazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123106507-1875937 08B05_rep_A_Dacarbazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/456-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F9_id.mzML at line 21
index 550 is out of bounds for axis 0 with size 550
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_131_3C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_A5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_A5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GD4_01_16821.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122934300-1867662 05E02_rep_B_Bambuterol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122934300-1867662 05E02_rep_B_Bambuterol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151908504-1867890 05C09_rep_C_Chlorprothixene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151908504-1867890 05C09_rep_C_Chlorprothixene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7F07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152956010-1577175 Batch3_SU8686_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_C10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087892/peak/Peak List Files/MOLM14 VEN ARAC/QUANTITATIVE/SERIE 1/190419_C12_LS_CB_MOLM14_VEN_3_1.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control62_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control62_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151145799-1576279 Batch5_SBC5_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122410702-1879913 15D06_rep_C_Triclosanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122410702-1879913 15D06_rep_C_Triclosanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0032_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0032_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152019032-1867947 05E05_rep_C_Metergolineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152019032-1867947 05E05_rep_C_Metergolineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBmegR224h3a.mzML at line 689
Opening and ending tag mismatch: binaryDataArray line 270744 and binary, line 270747, column 852 (pBmegR224h3a.mzML, line 270747)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113140436-1874408 11B06_rep_B_Fosfosala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113140436-1874408 11B06_rep_B_Fosfosala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152423441-1576897 Batch2_T47D_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223901136-2227689 pooled.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNT302_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-qc_low.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201804615-1882078 16D05_rep_C_Perospironeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201804615-1882078 16D05_rep_C_Perospironeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125109167-1862798 03F02_rep_C_Piroxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125109167-1862798 03F02_rep_C_Piroxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_0126_190128100157.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111631381-1871579 10A10_rep_B_Sulfanilamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111631381-1871579 10A10_rep_B_Sulfanilamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112614943-1874158 11A05_rep_A_Spectinomycin_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112614943-1874158 11A05_rep_A_Spectinomycin_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/epd_#3_P4F3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (epd_#3_P4F3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152340505-1576863 Batch1_HCC70_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V5_EDTAk3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNQ525_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28022021_Batch02_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114025016-1874791 11C06_rep_D_Trichlormethiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114025016-1874791 11C06_rep_D_Trichlormethiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafTreatedB1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafTreatedB1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bglB_P3F3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (bglB_P3F3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_E12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_SERUM_V1_CAT.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNT302_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/036_CRa_H9M5_M470_C03_K3_low_pos.mzXML at line 689
Premature end of data in tag peaks line 15999, line 16003, column 11767 (036_CRa_H9M5_M470_C03_K3_low_pos.mzXML, line 16003)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cobT_P3E1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (cobT_P3E1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C4_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_C6_id_positive.mzML at line 21
index 345 is out of bounds for axis 0 with size 345
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/436.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000097448/updates/2025-05-29_amsidebottom_3d270e8d/raw/GC1410_379_1207/025__20221027__GC379S__3806-S__dil.mzML at line 689
Premature end of data in tag indexedmzML line 2, line 19698, column 1 (025__20221027__GC379S__3806-S__dil.mzML, line 19698)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111552989-1871550 10E04_rep_B_Meclofenoxate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111552989-1871550 10E04_rep_B_Meclofenoxate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_8_male_2022_1017_Michael_neg-0.0026.mzML at line 689
Premature end of data in tag binary line 21631, line 21631, column 1022001 (2_8_male_2022_1017_Michael_neg-0.0026.mzML, line 21631)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C3_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample37n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152315443-1576843 Batch2_NCIH520_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152857077-1577125 Batch3_HT1197_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130505150-1877492 13A10_rep_C_Darifenacin_hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130505150-1877492 13A10_rep_C_Darifenacin_hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_99.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N22_id.mzML at line 21
index 573 is out of bounds for axis 0 with size 573
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_D6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112454588-1921986 3_G2_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112454588-1921986 3_G2_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_C7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124112936-1876422 08F11_rep_D_Acamprosate_calciuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124112936-1876422 08F11_rep_D_Acamprosate_calciuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_dilute_190131215542.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C11_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rihB_#2_P6E9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (rihB_#2_P6E9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125504886-1877031 12A02_rep_D_Niacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125504886-1877031 12A02_rep_D_Niacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1214.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1214.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR08/withKBr/1403115T.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_C4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150914781-1924651 2_E10_RGT2_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150914781-1924651 2_E10_RGT2_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082692/ccms_peak/ST000665/EX00348-lipidomics/Raw data/POS/Test.mzXML at line 689
Extra content at the end of the document, line 79992, column 1 (Test.mzXML, line 79992)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150334430-1924360 1_F2_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150334430-1924360 1_F2_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2A05Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ldtB_#2_P3A8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (ldtB_#2_P3A8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_F8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I16_id.mzML at line 21
index 550 is out of bounds for axis 0 with size 550
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltI_P3D11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (gltI_P3D11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1D05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/549-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_D2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112552564-1922037 4_F9_GPR1_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112552564-1922037 4_F9_GPR1_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J7_id_MSn_negative.mzML at line 21
index 309 is out of bounds for axis 0 with size 309
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_C8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223850106-1870329 01D06_rep_C_Dapsonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223850106-1870329 01D06_rep_C_Dapsonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124054085-1876407 08B06_rep_D_Tenatoprazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124054085-1876407 08B06_rep_D_Tenatoprazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/449.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/3-hydroxybenzoic_acid_neg.mzXML at line 689
Premature end of data in tag peaks line 10247, line 10251, column 89580 (3-hydroxybenzoic_acid_neg.mzXML, line 10251)
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124526375-1862408 03H02_rep_A_Etodolacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124526375-1862408 03H02_rep_A_Etodolacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_91.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_171.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_171.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094202/ccms_peak/3DMM_pos_raw/Plate10/P10_B10.mzML at line 21
index 678 is out of bounds for axis 0 with size 678
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8D04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D20_id_MSn_positive.mzML at line 21
index 706 is out of bounds for axis 0 with size 706
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lgoT_#1_P5A5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (lgoT_#1_P5A5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_010EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/92/378387b40f7f20de27d5c3e9415a81/input_file/QC_20170207_010EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153818473-1577582 Batch6_HCC1806_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150933322-1924667 2_A1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150933322-1924667 2_A1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pyrH_P4G9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (pyrH_P4G9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/004_Nitrate_Day7_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151834226-1576618 Batch7_NCIH1693_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_C9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1374.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1374.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_50_RIN_54.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_50_RIN_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-078_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD1_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007652_032118-1Thr2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GD4_01_17055.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000083383/updates/2019-10-30_allegraaron_e0b9cac9/other/allegraaron/hui_fe_and_zn/Hui_N1_fe.mzXML at line 689
Premature end of data in tag peaks line 3919, line 3923, column 28818 (Hui_N1_fe.mzXML, line 3923)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124329588-1862316 03F11_rep_A_Indapamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124329588-1862316 03F11_rep_A_Indapamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_362_190125155942.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d3_281_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 40868, column 1 (SysVirol_IFL001_1918_d3_281_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 40868)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153445330-1577405 Batch4_SW780_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153142719-1868473 06E09_rep_B_Hydroxytacrine_maleate_(R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153142719-1868473 06E09_rep_B_Hydroxytacrine_maleate_(R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224146068-1870464 01F01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224146068-1870464 01F01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122709581-1867546 05B07_rep_A_Chlormezanonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122709581-1867546 05B07_rep_A_Chlormezanonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2E13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210313_LKM_mb_rapid_no_beads_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_85.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD6_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153232233-1868512 06H03_rep_B_Itopridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153232233-1868512 06H03_rep_B_Itopridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30069 - GI-14-456.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124604656-1862555 03E01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124604656-1862555 03E01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/282.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/753.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ptsH_P3G2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ptsH_P3G2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/panB_P4C9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (panB_P4C9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STE2_20EV_RA4_01_22572.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150756965-1924584 2_D5_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150756965-1924584 2_D5_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person04_blood_youth_POS.mzXML at line 689
attributes construct error, line 41, column 101 (Person04_blood_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gloA_#1_P4E3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (gloA_#1_P4E3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114114106-1922801 4_F9_STE2_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114114106-1922801 4_F9_STE2_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2C10P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102041841-1869759 07B10_rep_D_Propafenone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102041841-1869759 07B10_rep_D_Propafenone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/idi_#2_P5E6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (idi_#2_P5E6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GB8_01_11640.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1054.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1054.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_A6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/fgam_purL_P5G10_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (fgam_purL_P5G10_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152132953-1576762 Batch2_MDAMB468_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Bai_xyl_Glu_LbUGT3_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tesA_P3H3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (tesA_P3H3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114838648-1875183 12C06_rep_B_Urapidil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114838648-1875183 12C06_rep_B_Urapidil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123744363-1876256 08H03_rep_C_Dipivefrin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123744363-1876256 08H03_rep_C_Dipivefrin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223544583-1870186 01C02_rep_B_Sulfaphenazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223544583-1870186 01C02_rep_B_Sulfaphenazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125140208-1876875 12B01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125140208-1876875 12B01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150418081345.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150410910-1924391 1_E5_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150410910-1924391 1_E5_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E18_id_negative.mzML at line 21
index 232 is out of bounds for axis 0 with size 232
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153335774-1868562 06A10_rep_B_Amiodarone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153335774-1868562 06A10_rep_B_Amiodarone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201543852-1881971 16C10_rep_C_Ethoxzolamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201543852-1881971 16C10_rep_C_Ethoxzolamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafTreatedA3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafTreatedA3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/382.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_2_P_rep_4_B-B2_1_5643.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybiV_P3F6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ybiV_P3F6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAJ03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNX435_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152542691-1576962 Batch2_OVCAR3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210108_AD_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM6C006.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201813630-1882085 16E07_rep_C_Enalaprilat_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201813630-1882085 16E07_rep_C_Enalaprilat_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112208644-1873576 10F03_rep_D_Leflunomideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112208644-1873576 10F03_rep_D_Leflunomideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124532771-1862413 03C08_rep_A_Catharanthinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124532771-1862413 03C08_rep_A_Catharanthinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112646547-1874183 11E08_rep_A_(-)_-Levobunolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112646547-1874183 11E08_rep_A_(-)_-Levobunolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB1B03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/67-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/112.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122240286-1879844 15H08_rep_C_Rivastigminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122240286-1879844 15H08_rep_C_Rivastigminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA22.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153514382-1868640 06H05_rep_C_Fentiazaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153514382-1868640 06H05_rep_C_Fentiazaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M7_id_MSn_positive.mzML at line 21
index 557 is out of bounds for axis 0 with size 557
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_mock_d1_290_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 27213, column 1 (SysVirol_IFL001_mock_d1_290_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 27213)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113637567-1874608 11A11_rep_C_Sulconazole_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113637567-1874608 11A11_rep_C_Sulconazole_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100640838-1869084 07D01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100640838-1869084 07D01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNH287_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125740336-1877151 13C11_rep_A_Phenylbutazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125740336-1877151 13C11_rep_A_Phenylbutazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GC10_01_11859.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130118618-1863297 04C08_rep_A_Clotrimazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130118618-1863297 04C08_rep_A_Clotrimazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-cc5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample053_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD1_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_19032111_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223924885-2227709 PAT41.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122833791-1875817 08F10_rep_A_Diflorasone_Diacetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122833791-1875817 08F10_rep_A_Diflorasone_Diacetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/allB_#1_P4A4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (allB_#1_P4A4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153409657-1577376 Batch4_NCIH2286_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122946910-1875874 08B08_rep_A_Escitalopram_oxalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122946910-1875874 08B08_rep_A_Escitalopram_oxalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/10 Sept 2021/converted/210916_tanaka12.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_5_B_rep_4_B-E9_1_5681.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112002950-1921733 2_B1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112002950-1921733 2_B1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Serratia_proteamaculans_02.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E10_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151647595-1576530 Batch7_NCIH441_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/016_100uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151421040-1924915 4_E8_SNF3_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151421040-1924915 4_E8_SNF3_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_1_B-A2_1_5815.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113105863-1874381 11B02_rep_B_Auranofinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113105863-1874381 11B02_rep_B_Auranofinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5S004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201902505-1882124 16G07_rep_D_Alosetron_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201902505-1882124 16G07_rep_D_Alosetron_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124820126-1876727 12B06_rep_C_Aminohippuric_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124820126-1876727 12B06_rep_C_Aminohippuric_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101243369-1869374 07G06_rep_B_Tetramisole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101243369-1869374 07G06_rep_B_Tetramisole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_A5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222917329-1869893 01H09_rep_A_Thioridazine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222917329-1869893 01H09_rep_A_Thioridazine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/636.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122932683-1875863 08B10_rep_A_Lacidipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122932683-1875863 08B10_rep_A_Lacidipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112841421-1874274 11B06_rep_A_Fosfosala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112841421-1874274 11B06_rep_A_Fosfosala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_155.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150500514-1924432 1_F11_RGT2_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150500514-1924432 1_F11_RGT2_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_007ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/72/df9b35bddd24950611b33420619773/input_file/QC_20170127_007ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092514791-1878867 14H04_rep_B_Viomycin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092514791-1878867 14H04_rep_B_Viomycin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM2Q004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Photobacterium_halotolerans_S2753_02.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiI_#5_P4H7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (thiI_#5_P4H7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121952263-1879716 15H06_rep_B_Pravastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121952263-1879716 15H06_rep_B_Pravastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_263.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ilvH_#3_P4H4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (ilvH_#3_P4H4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201646048-1878019 09A06_rep_C_Flurandrenolideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201646048-1878019 09A06_rep_C_Flurandrenolideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3C01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122938129-1880168 15C11_rep_D_Fluconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122938129-1880168 15C11_rep_D_Fluconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130552648-1877530 13G01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130552648-1877530 13G01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cfa_#3_P4B7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (cfa_#3_P4B7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114401966-1922951 4_E5_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114401966-1922951 4_E5_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091038/metadata/miltonsilva/Negative_samples/CM-Ca-P2_Neg.mzML at line 689
AttValue: " or ' expected, line 155766, column 61 (CM-Ca-P2_Neg.mzML, line 155766)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180626_ES_H3K_bacth8_repB_109.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/entH_#1_P4D2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (entH_#1_P4D2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d8_288_lipid__Neg_16Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 26694, column 1 (SysVirol_IFL001_Cal04RG_d8_288_lipid__Neg_16Sep13_13-07-01.mzXML, line 26694)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111731038-1921603 1_B3_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111731038-1921603 1_B3_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI4b_2_19_1_888.mzML at line 689
Premature end of data in tag binary line 2830741, line 2830741, column 301906 (50130_microPOTS_Rat_Brain_ROI4b_2_19_1_888.mzML, line 2830741)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152807562-1868309 06B09_rep_A_Biotinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152807562-1868309 06B09_rep_A_Biotinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114029960-1874795 11C07_rep_D_Oxalamine_citrate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114029960-1874795 11C07_rep_D_Oxalamine_citrate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ygaZ_P3F1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (ygaZ_P3F1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101621098-1869546 07H11_rep_C_Prenylamine_lactateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101621098-1869546 07H11_rep_C_Prenylamine_lactateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122943208-1880172 15B11_rep_D_Diclazurila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122943208-1880172 15B11_rep_D_Diclazurila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/004_Nitrate_Day2_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009456_IBD200_E7_A7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/msrB_P3H6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (msrB_P3H6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_H5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlich1001R131_5h2a.mzML at line 689
attributes construct error, line 17322, column 87 (pBlich1001R131_5h2a.mzML, line 17322)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 Column1_test_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122319603-1879874 15E11_rep_C_Tulobuterola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122319603-1879874 15E11_rep_C_Tulobuterola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113836271-1922661 3_F8_STE2_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113836271-1922661 3_F8_STE2_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3G03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082735/ccms_peak/ST000664/EX00347-lipidomics/Raw data/NEG/BATCH2/20150323_Authentic.mzXML at line 689
Specification mandates value for attribute retentionTTZUQ64yNAJXqARDxEekAE3slEPMJ9QAULOUQ9QCtABTd8RD1aZT8FQLdEPV8, line 23385, column 81 (20150323_Authentic.mzXML, line 23385)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152536521-1576957 Batch2_BXPC3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151651117-1576533 Batch7_CAL51_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_3_P_rep_3_B-E6_1_5678.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113707105-1874632 11A06_rep_C_Piromidic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113707105-1874632 11A06_rep_C_Piromidic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_P5_id_MSn_negative.mzML at line 21
index 308 is out of bounds for axis 0 with size 308
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thrA_P5H3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (thrA_P5H3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152939400-1868381 06A11_rep_A_Amphotericin_Bb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152939400-1868381 06A11_rep_A_Amphotericin_Bb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/adhE_#1_P4A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (adhE_#1_P4A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET44.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET44.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control26_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control26_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112144453-1873557 10A11_rep_D_Balsalazide_Sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112144453-1873557 10A11_rep_D_Balsalazide_Sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_99.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D3_preFOS_1_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114048633-1874810 11C02_rep_D_Azlocillin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114048633-1874810 11C02_rep_D_Azlocillin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHD09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/87.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B20_id_MSn_positive.mzML at line 21
index 535 is out of bounds for axis 0 with size 535
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113513352-1922486 2_D8_IZH2_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113513352-1922486 2_D8_IZH2_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223844168-2227674 Healthy4.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122945587-1875873 08A09_rep_A_Acarboseb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122945587-1875873 08A09_rep_A_Acarboseb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112038344-1921763 2_A11_GAP1_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112038344-1921763 2_A11_GAP1_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153426866-1577390 Batch4_NCIH1666_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/797.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_C4_id_positive.mzML at line 21
index 354 is out of bounds for axis 0 with size 354
Error processing file: /data/datasets/server/MassIVE/MSV000091220/peak/Cea17-1.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_83.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GD8_01_12122.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aaeB_P4C8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (aaeB_P4C8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD4_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arnC_P3G7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (arnC_P3G7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009506_IBD200_E10_B2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114832713-1875178 12F09_rep_B_Benserazide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114832713-1875178 12F09_rep_B_Benserazide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_C9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_C9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201405190-1877902 09H06_rep_C_Sulfachloropyridazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201405190-1877902 09H06_rep_C_Sulfachloropyridazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125808042-1877172 13H06_rep_A_Molindone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125808042-1877172 13H06_rep_A_Molindone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092208225-1878721 14F11_rep_A_Toltrazurilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092208225-1878721 14F11_rep_A_Toltrazurilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092048870-1878659 14H07_rep_A_Dorzolamide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092048870-1878659 14H07_rep_A_Dorzolamide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_32_RIN_20.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_32_RIN_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_27.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_27.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_A6_id_negative.mzML at line 21
index 204 is out of bounds for axis 0 with size 204
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_G6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091609/raw/GNPS Workshop Dataset/011123_613B_S500_DDA1.mzXML at line 689
Extra content at the end of the document, line 29108, column 1 (011123_613B_S500_DDA1.mzXML, line 29108)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-blank3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111540117-1871540 10F09_rep_B_Proadifen_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111540117-1871540 10F09_rep_B_Proadifen_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_163.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113121398-1874393 11E04_rep_B_Nafcillin_sodium_salt_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113121398-1874393 11E04_rep_B_Nafcillin_sodium_salt_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_10_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_10_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_133.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K9_id_MSn_negative.mzML at line 21
index 356 is out of bounds for axis 0 with size 356
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L7_id_MSn_positive.mzML at line 21
index 392 is out of bounds for axis 0 with size 392
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix7_160531181010.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150622922-1924503 2_F3_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150622922-1924503 2_F3_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200907298-1881678 16G05_rep_A_Lomerizine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200907298-1881678 16G05_rep_A_Lomerizine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087808/raw/RIGHT_SSL_EI_sleep_STER_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1624.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1624.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202231950-1878286 10G05_rep_A_Bendroflumethiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202231950-1878286 10G05_rep_A_Bendroflumethiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A10_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-qc_med (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153756081-1577563 Batch6_SF268_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123413776-1876088 08G09_rep_B_Benazepril_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123413776-1876088 08G09_rep_B_Benazepril_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_2_P_rep_3_B-A9_1_5828.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_11P_A7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C11_id_MSn_negative.mzML at line 21
index 251 is out of bounds for axis 0 with size 251
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153711529-1577526 Batch4_NCIH1048_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_E3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/439.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150120989-1864178 02C05_rep_B_Famotidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150120989-1864178 02C05_rep_B_Famotidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cusF_#1_P3G9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (cusF_#1_P3G9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_229.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Naringenin_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_56.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH3.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/74.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114436048-1874995 12D08_rep_A_Flurbiprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114436048-1874995 12D08_rep_A_Flurbiprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_D4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J11_id_MSn_positive.mzML at line 21
index 515 is out of bounds for axis 0 with size 515
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151654710-1576536 Batch7_SF295_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine65cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine65cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/903.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_D3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/077_75.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125509054-1862992 03F06_rep_D_Mefexamide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125509054-1862992 03F06_rep_D_Mefexamide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LIM2_30EV_RA8_01_22538.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/990.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152003170-1576691 Batch1_HCC1806_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5E06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GE4_01_16961.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0046_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0046_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153739537-1868757 06G06_rep_C_Tosufloxacin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153739537-1868757 06G06_rep_C_Tosufloxacin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case116_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case116_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-108_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151051109-1924734 3_A2_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151051109-1924734 3_A2_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_P7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_28_RIN_54.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_28_RIN_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100406652-1868961 06E04_rep_D_Gabazine_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100406652-1868961 06E04_rep_D_Gabazine_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1147.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172655243-1889911 NNb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180915_ES_H3K_batch2_repB_32.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202141916-1882248 16D06_rep_D_Cefpiramideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202141916-1882248 16D06_rep_D_Cefpiramideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD6_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152135448-1576764 Batch2_NCIH358_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYD003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_G7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123522751-1876144 08A04_rep_B_Pyridostigmine_iodidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123522751-1876144 08A04_rep_B_Pyridostigmine_iodidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_C4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD3_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114315682-1922910 4_B4_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114315682-1922910 4_B4_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093051868-1879126 14D09_rep_C_Benzylpenicillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093051868-1879126 14D09_rep_C_Benzylpenicillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180822_ES_H3K_batch10_repB_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152219066-1868042 05E02_rep_D_Bambuterol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152219066-1868042 05E02_rep_D_Bambuterol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1211.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1211.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190356155-1889814 Na.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/72-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD6_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNS606_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111706273-1871606 10A11_rep_B_Balsalazide_Sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111706273-1871606 10A11_rep_B_Balsalazide_Sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_QC_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemL_P3C9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (hemL_P3C9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091855331-1878571 13E11_rep_D_Lodoxamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091855331-1878571 13E11_rep_D_Lodoxamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113038366-1922247 1_E11_IZH2_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113038366-1922247 1_E11_IZH2_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122837696-1875820 08H05_rep_A_Tomoxetine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122837696-1875820 08H05_rep_A_Tomoxetine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_54.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151628869-1576514 Batch7_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N9_id_MSn_positive.mzML at line 21
index 553 is out of bounds for axis 0 with size 553
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150716479-1864932 02H04_rep_C_Didanosinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150716479-1864932 02H04_rep_C_Didanosinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J3_id_MSn_negative.mzML at line 21
index 309 is out of bounds for axis 0 with size 309
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C6_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/616.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/002_1010_1_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114623199-1875076 12D07_rep_A_Nitrendipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114623199-1875076 12D07_rep_A_Nitrendipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124144837-1862233 03G04_rep_A_Xylometazoline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124144837-1862233 03G04_rep_A_Xylometazoline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_115_3A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/149_121.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_09_liver_control_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_09_liver_control_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR131_5h3a.mzML at line 88
Invalid base64-encoded string: number of data characters (6661) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_G3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_91.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_50_RIN_54.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_50_RIN_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124802359-1862649 03A03_rep_B_Pentylenetetrazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124802359-1862649 03A03_rep_B_Pentylenetetrazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_plasma_4h_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer2_plasma_4h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121442447-1866951 04C10_rep_B_Clomipramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121442447-1866951 04C10_rep_B_Clomipramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Sphingomonas_sp_MSR01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124513098-1876617 09E04_rep_A_Pempidine_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124513098-1876617 09E04_rep_A_Pempidine_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5C09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100240529-1868893 06F10_rep_D_Butalbitala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100240529-1868893 06F10_rep_D_Butalbitala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A9_id_MSn_positive.mzML at line 21
index 684 is out of bounds for axis 0 with size 684
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_95.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_95.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD5_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/488-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.co_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G19_id_negative.mzML at line 21
index 242 is out of bounds for axis 0 with size 242
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112113583-1873052 10H01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112113583-1873052 10H01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/251.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD2_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GE2_01_17193.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C15_id_MSn_positive.mzML at line 21
index 417 is out of bounds for axis 0 with size 417
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150800435-1924587 2_G4_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150800435-1924587 2_G4_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150238577-1924314 1_C5_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150238577-1924314 1_C5_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J12_id_MSn_negative.mzML at line 21
index 354 is out of bounds for axis 0 with size 354
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114746893-1875141 12C11_rep_B_Nisoxetine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114746893-1875141 12C11_rep_B_Nisoxetine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_19073146_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/LiLi-15d.mzXML at line 689
Premature end of data in tag msRun line 5, line 1543, column 1 (LiLi-15d.mzXML, line 1543)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/zitB_P4H2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (zitB_P4H2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112709300-1874201 11E04_rep_A_Nafcillin_sodium_salt_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112709300-1874201 11E04_rep_A_Nafcillin_sodium_salt_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_G7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200943702-1877711 09D05_rep_B_Nalidixic_acid_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200943702-1877711 09D05_rep_B_Nalidixic_acid_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoI_P3E2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (nuoI_P3E2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample196_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111456726-1871507 10A01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111456726-1871507 10A01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151614620-1576502 Batch7_SN12C_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201712538-1882038 16C07_rep_C_Avobenzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201712538-1882038 16C07_rep_C_Avobenzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ4_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_87.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N22_id_MSn_positive.mzML at line 21
index 354 is out of bounds for axis 0 with size 354
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190201045056.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224054828-1870424 01A03_rep_D_Allantoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224054828-1870424 01A03_rep_D_Allantoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210923_LKM_beads_timecourse_20min_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114417442-1874980 12G05_rep_A_Phenoxybenzamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114417442-1874980 12G05_rep_A_Phenoxybenzamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100245715-1868897 06C09_rep_D_Roxatidine_Acetate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100245715-1868897 06C09_rep_D_Roxatidine_Acetate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190128235216.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_149.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_11P_A5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125312287-1862897 03C07_rep_C_Cloxacillin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125312287-1862897 03C07_rep_C_Cloxacillin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088606/peak/210116_AR_02_AGE015_F03_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_C7_id_positive.mzML at line 21
index 351 is out of bounds for axis 0 with size 351
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisH_#3_P4D7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (hisH_#3_P4D7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111641364-1871587 10D09_rep_B_Ribostamycin_sulfate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111641364-1871587 10D09_rep_B_Ribostamycin_sulfate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150629932-1864896 02G09_rep_C_Canrenoic acid potassium salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150629932-1864896 02G09_rep_C_Canrenoic acid potassium salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_A6_id_negative.mzML at line 21
index 221 is out of bounds for axis 0 with size 221
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E19_id_MSn_positive.mzML at line 21
index 432 is out of bounds for axis 0 with size 432
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L12_id_MSn_positive.mzML at line 21
index 676 is out of bounds for axis 0 with size 676
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190205_ES_H3K_batch15_repC_169.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/006_1022_1_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/005_Urea_Day2_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case160_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case160_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdsB_P3G1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (kdsB_P3G1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G05Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person08_plasma_elder_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person08_plasma_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125810700-1877174 13H02_rep_A_Halofantrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125810700-1877174 13H02_rep_A_Halofantrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_092b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/486.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/asnB_#1_P5C5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (asnB_#1_P5C5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111357540-1871461 10B09_rep_B_Folinic_acid_calcium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111357540-1871461 10B09_rep_B_Folinic_acid_calcium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121236580-1879388 14E11_rep_D_Homosalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121236580-1879388 14E11_rep_D_Homosalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_C6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample174_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A7_id_MSn_negative.mzML at line 21
index 175 is out of bounds for axis 0 with size 175
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_177.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151722355-1576559 Batch3_J82_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150950704-1865052 02G01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150950704-1865052 02G01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L5_id.mzML at line 21
index 535 is out of bounds for axis 0 with size 535
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G17_id_MSn_negative.mzML at line 21
index 286 is out of bounds for axis 0 with size 286
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-1-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_106b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202023245-1882187 16A08_rep_D_Amorolfine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202023245-1882187 16A08_rep_D_Amorolfine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhaD_P3A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (rhaD_P3A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111630086-1871578 10G07_rep_B_Methimazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111630086-1871578 10G07_rep_B_Methimazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152329178-1576854 Batch1_LK2_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152735513-1577056 Batch2_IGROV1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130221938-1877365 13F09_rep_B_Alprostadila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130221938-1877365 13F09_rep_B_Alprostadila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092138270-1878697 14C07_rep_A_Methantheline_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092138270-1878697 14C07_rep_A_Methantheline_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH42.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD4_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094792/raw/raw_files/Renilla.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223017899-1869938 01E02_rep_A_Procaine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223017899-1869938 01E02_rep_A_Procaine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D16_id_negative.mzML at line 21
index 254 is out of bounds for axis 0 with size 254
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/278.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201539815-1881968 16E01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201539815-1881968 16E01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_250.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_07_336_prot_43_IMS_15Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201030097-1881739 16H01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201030097-1881739 16H01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ3_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mglB_P4A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (mglB_P4A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153514712-1577429 Batch4_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fepC_P5G8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (fepC_P5G8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_G5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200809242-1881635 16D11_rep_A_Phenprobamatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200809242-1881635 16D11_rep_A_Phenprobamatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114642197-1875091 12G11_rep_A_Stavudineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114642197-1875091 12G11_rep_A_Stavudineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person18_RBC_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 81 (Person18_RBC_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_17091608_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114913533-1875211 12G05_rep_B_Phenoxybenzamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114913533-1875211 12G05_rep_B_Phenoxybenzamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170207_035EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/f6/1483b008b9378c3f9a64da7c5f0b20/input_file/MMW3_20170207_035EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNH189_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sdhA_P3G4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (sdhA_P3G4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165831732-2227538 PAT48.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nikA_P4D9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (nikA_P4D9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_G4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074323.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/004_Nitrate_Day17_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mppA_P4E2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (mppA_P4E2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124646447-1862588 03D07_rep_B_Pentoxifyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124646447-1862588 03D07_rep_B_Pentoxifyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603154000392-1577668 Batch6_SF539_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_A3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_F20_id_MSn_negative.mzML at line 21
index 347 is out of bounds for axis 0 with size 347
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123421190-1876094 08D09_rep_B_Xylazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123421190-1876094 08D09_rep_B_Xylazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_115_2A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD1_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151846161-1576628 Batch7_NCIH1993_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_CABIN_sample01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F8_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GB9_01_11841.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ispB_#1_P4C6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (ispB_#1_P4C6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153051122-1577216 Batch3_MGHU3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/590.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB1C20.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201050233-1881754 16E03_rep_B_Anagrelideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201050233-1881754 16E03_rep_B_Anagrelideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col1_JX_04102015_150413133459.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_D7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/948.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/391.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAJ01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD6_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L22_id_MSn_negative.mzML at line 21
index 374 is out of bounds for axis 0 with size 374
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD1_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM4V009.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L3_id_MSn_negative.mzML at line 21
index 331 is out of bounds for axis 0 with size 331
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201355680-1877895 09F02_rep_C_Tylosinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201355680-1877895 09F02_rep_C_Tylosinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113650624-1922569 2_A3_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113650624-1922569 2_A3_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N5_id_MSn_negative.mzML at line 21
index 339 is out of bounds for axis 0 with size 339
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121607397-1867017 04H11_rep_B_Fluphenazine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121607397-1867017 04H11_rep_B_Fluphenazine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123902186-1876318 08D01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123902186-1876318 08D01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Serratia_MADAA01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130059238-1877301 13E09_rep_B_Gabexate_mesilatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130059238-1877301 13E09_rep_B_Gabexate_mesilatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201429171-1881918 16G11_rep_C_Latanoprostb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201429171-1881918 16G11_rep_C_Latanoprostb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hC3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hC3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112335592-1921917 3_A11_GPR1_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112335592-1921917 3_A11_GPR1_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B11_id_negative.mzML at line 21
index 253 is out of bounds for axis 0 with size 253
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201027346-1877743 09B02_rep_B_Glimepirideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201027346-1877743 09B02_rep_B_Glimepirideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_dilute_190201064711.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083449/ccms_peak/NIH_synthesis_UV_raw/B_NP_Lib.mzML at line 689
Premature end of data in tag spectrumList line 68, line 240444, column 1 (B_NP_Lib.mzML, line 240444)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/citG_#1_P4G5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (citG_#1_P4G5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_01_liver_control_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_01_liver_control_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150418090025.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210324_AD_35.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_22.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_22.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145710184-1863979 02F10_rep_A_Cefotaxime sodium salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145710184-1863979 02F10_rep_A_Cefotaxime sodium salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_F1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_102.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gudX_#3_P5D10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (gudX_#3_P5D10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150832091-1864991 02A01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150832091-1864991 02A01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151215506-1924807 3_B8_SNF3_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151215506-1924807 3_B8_SNF3_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125012654-1862753 03B06_rep_C_Aceclofenacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125012654-1862753 03B06_rep_C_Aceclofenacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091711587-1878488 13D03_rep_D_Pizotifen_malatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091711587-1878488 13D03_rep_D_Pizotifen_malatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/eptB_P3H7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (eptB_P3H7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112516044-1922005 3_F2_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112516044-1922005 3_F2_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B10_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153306730-1577325 Batch4_MDAMB435S_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112355877-1874047 10G06_rep_D_Dicumarolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112355877-1874047 10G06_rep_D_Dicumarolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202359969-1878356 10G01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202359969-1878356 10G01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145921681-1864085 02E02_rep_A_Bromocryptine mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145921681-1864085 02E02_rep_A_Bromocryptine mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/4-hydroxybenzoic_acid.mzXML at line 689
Premature end of data in tag msRun line 5, line 7794, column 1 (4-hydroxybenzoic_acid.mzXML, line 7794)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/abgB_P4G2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (abgB_P4G2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/5aop_hemB_P4C6_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024912 (5aop_hemB_P4C6_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/(R)-2-hydroxystearic_acid_neg.mzXML at line 689
Premature end of data in tag peaks line 10927, line 10931, column 56816 ((R)-2-hydroxystearic_acid_neg.mzXML, line 10931)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mhpB_P4D7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (mhpB_P4D7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092813574-1879005 14F08_rep_B_(-)-Isoproterenol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092813574-1879005 14F08_rep_B_(-)-Isoproterenol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124619619-1876666 09A10_rep_A_Etanidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124619619-1876666 09A10_rep_A_Etanidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_sample07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J18_id_MSn_positive.mzML at line 21
index 325 is out of bounds for axis 0 with size 325
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_89.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_89.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNY228_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153126341-1577244 Batch4_SW156_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E17_id_MSn_positive.mzML at line 21
index 703 is out of bounds for axis 0 with size 703
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153133609-1868466 06A04_rep_B_Thyroxine_(L)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153133609-1868466 06A04_rep_B_Thyroxine_(L)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113759114-1874673 11E05_rep_C_Procyclidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113759114-1874673 11E05_rep_C_Procyclidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152946562-1577167 Batch3_T24_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_E6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/667.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_D4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/635.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088741/ccms_peak/QLTMS2_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009495_IBD200_E9_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C7_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_80.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_80.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153719791-1577533 Batch4_NCIH810_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_232.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_109.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121448862-1866956 04B09_rep_B_Antazoline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121448862-1866956 04B09_rep_B_Antazoline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OAW2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E6_id_MSn_positive.mzML at line 21
index 556 is out of bounds for axis 0 with size 556
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121238079-1879389 14E11_rep_D_Homosalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121238079-1879389 14E11_rep_D_Homosalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101936986-1869706 07F09_rep_D_Phenindioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101936986-1869706 07F09_rep_D_Phenindioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_C12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112503103-1874101 10C08_rep_D_Aprepitantb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112503103-1874101 10C08_rep_D_Aprepitantb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-PDAC01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_23.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_23.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201803306-1882077 16D05_rep_C_Perospironea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201803306-1882077 16D05_rep_C_Perospironea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_phospho_HFD25_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/24.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfJ_P3A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (hyfJ_P3A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated8hA3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated8hA3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200952966-1877718 09H05_rep_B_Isosorbide_dinitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200952966-1877718 09H05_rep_B_Isosorbide_dinitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124011976-1876374 08B10_rep_D_Lacidipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124011976-1876374 08B10_rep_D_Lacidipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111822965-1921648 2_G4_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111822965-1921648 2_G4_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D16_id.mzML at line 21
index 524 is out of bounds for axis 0 with size 524
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151822182-1576608 Batch7_UACC257_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_02062001_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frmA_P4E3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (frmA_P4E3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/blank_2_160423131903.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_54_CNR_25.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_54_CNR_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/957.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potC_#1_P3A2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (potC_#1_P3A2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130653703-1877578 13F05_rep_C_Sertralineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130653703-1877578 13F05_rep_C_Sertralineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1059.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151637105-1576521 Batch7_SF295_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122631065-1867515 05G10_rep_A_Ketoconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122631065-1867515 05G10_rep_A_Ketoconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4T4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4T4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6G12_160603142416.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_257.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/24 Sept 2021 - Copy/convert/210924_06.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100153105-1868856 06H07_rep_D_Primaquine_diphosphateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100153105-1868856 06H07_rep_D_Primaquine_diphosphateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_08P_A3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A5_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152556903-1868208 05B06_rep_D_Zaprinasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152556903-1868208 05B06_rep_D_Zaprinasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S1cells_4_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_SERUM_V7_SSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201447229-1881932 16F11_rep_C_Ritonavirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201447229-1881932 16F11_rep_C_Ritonavirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR37_5h3a.mzML at line 689
Opening and ending tag mismatch: binary line 18802 and binaryDataArray, line 18804, column 31 (pBlateR37_5h3a.mzML, line 18804)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1557.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1557.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ3_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092321847-1878779 14E01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092321847-1878779 14E01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/001_Nitrate_Day14_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123544140-1876161 08C09_rep_C_Galanthamine_hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123544140-1876161 08C09_rep_C_Galanthamine_hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_30_CNR_52.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_30_CNR_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_O15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30237 - GI-17-537.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/441.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/475-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083167.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151728389-1576564 Batch7_SKMEL2_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152043666-1576723 Batch1_NCIH2030_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_138.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_138.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/20221212_carryover_test_noISTD_blank01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/264.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123855863-1876313 08A11_rep_C_Nicotinamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123855863-1876313 08A11_rep_C_Nicotinamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170125_064EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/77/7b99df6b1982200876df7fd687f108/input_file/MMW5_20170125_064EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/361.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151813818-1576601 Batch4_HPAC_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_G8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S127.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S127.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yehY_P4D3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (yehY_P4D3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H11_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4C04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122233634-1867323 04G05_rep_D_Econazole_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122233634-1867323 04G05_rep_D_Econazole_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_31_RIN_50.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_31_RIN_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD4_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122847630-1867625 05H10_rep_A_Prochlorperazine_dimaleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122847630-1867625 05H10_rep_A_Prochlorperazine_dimaleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine70.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine70.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130043200-1863267 04D05_rep_A_Prednisoloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130043200-1863267 04D05_rep_A_Prednisoloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100253024-1868903 06D02_rep_D_Pefloxacinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100253024-1868903 06D02_rep_D_Pefloxacinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD5_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153502528-1577419 Batch4_NCIH1048_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_17091608_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111807913-1872040 10A05_rep_C_Sulfamethoxypyridazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111807913-1872040 10A05_rep_C_Sulfamethoxypyridazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170207_029EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/9f/0594b3cad383550be64b9d0ffd16dd/input_file/SH10_20170207_029EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD5_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223827448-1870311 01H10_rep_C_Diphemanil methylsulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223827448-1870311 01H10_rep_C_Diphemanil methylsulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201348832-1877890 09A08_rep_C_Rebamipidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201348832-1877890 09A08_rep_C_Rebamipidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223749815-1870282 01E07_rep_C_Naphazoline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223749815-1870282 01E07_rep_C_Naphazoline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153219478-1868502 06D08_rep_B_Digoxina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153219478-1868502 06D08_rep_B_Digoxina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122417486-1867407 04F03_rep_D_Trazodone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122417486-1867407 04F03_rep_D_Trazodone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_57_CNR_52.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_57_CNR_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4F04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kefB_P4C8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (kefB_P4C8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8H10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_116b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/FIL2_30EV_RA3_01_22496.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K13_id_MSn_positive.mzML at line 21
index 734 is out of bounds for axis 0 with size 734
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2E09Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD6_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122824091-1875809 08H09_rep_A_Dexfenfluramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122824091-1875809 08H09_rep_A_Dexfenfluramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152904125-1577131 Batch5_NCIH2347_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151019361-1924707 3_G11_SNF3_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151019361-1924707 3_G11_SNF3_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2C08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151217131-1576305 Batch5_NCIH345_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_36_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_36_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A17_id_MSn_positive.mzML at line 21
index 663 is out of bounds for axis 0 with size 663
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201850639-1878113 09G02_rep_D_Trihexyphenidyl-D,L_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201850639-1878113 09G02_rep_D_Trihexyphenidyl-D,L_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092626757-1878923 14C05_rep_B_Meprylcaine_hydrochloride_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092626757-1878923 14C05_rep_B_Meprylcaine_hydrochloride_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/C24_III_ESI+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EBM006B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-cc6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N3_id.mzML at line 21
index 598 is out of bounds for axis 0 with size 598
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_89.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-048.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-048.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_121.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_121.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152432293-1576904 Batch2_NCIH2085_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121651076-1879579 15F11_rep_A_Bifonazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121651076-1879579 15F11_rep_A_Bifonazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_3_P4A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (ctrl_3_P4A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100542041-1869037 07C03_rep_A_Biperiden_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100542041-1869037 07C03_rep_A_Biperiden_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D2_preFOS_3_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170127_049ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/9c/078f4461638a34d0db40b2624dfb09/input_file/MMW4_20170127_049ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/121-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B5_id_MSn_negative.mzML at line 21
index 290 is out of bounds for axis 0 with size 290
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GB1_01_16917.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M13_id_negative.mzML at line 21
index 252 is out of bounds for axis 0 with size 252
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case154_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case154_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person08_RBC_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Person08_RBC_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/952.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130541611-1877521 13A06_rep_C_Floxuridinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130541611-1877521 13A06_rep_C_Floxuridinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113007422-1874340 11F05_rep_B_Roxithromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113007422-1874340 11F05_rep_B_Roxithromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/blank_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S01_0126_190128141105.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201425570-1877917 09G07_rep_C_Chlorcyclizine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201425570-1877917 09G07_rep_C_Chlorcyclizine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cydA_#1_P4D9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (cydA_#1_P4D9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S96.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S96.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122544340-1879985 15C05_rep_D_Carprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122544340-1879985 15C05_rep_D_Carprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152750427-1868296 06C07_rep_A_Buflomedil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152750427-1868296 06C07_rep_A_Buflomedil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_59.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145736157-1864000 02D11_rep_A_Triamcinoloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145736157-1864000 02D11_rep_A_Triamcinoloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086335/ccms_peak/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Brancos/MeOH_14072.mzML at line 689
Extra content at the end of the document, line 46906, column 1 (MeOH_14072.mzML, line 46906)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152151884-1576777 Batch1_HCC1806_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100617355-1869065 07E04_rep_A_Miglitola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100617355-1869065 07E04_rep_A_Miglitola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD3_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009625_IBD200_E17_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/araF_P3F4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (araF_P3F4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121820293-1879647 15F08_rep_B_Vecuronium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121820293-1879647 15F08_rep_B_Vecuronium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_3_B-A2_1_5630.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_087_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153849122-1577608 Batch7_EKVX_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dhaL_P3G4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (dhaL_P3G4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115028324-1875272 12C10_rep_B_Nabumetonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115028324-1875272 12C10_rep_B_Nabumetonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111446571-1921076 1_H2_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111446571-1921076 1_H2_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S005_0126_190128173027.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_RBC_4h_NEG.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer1_RBC_4h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Verrucosispora_sp_MS100137_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/14.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1345.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1345.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201826502-1878095 09B06_rep_D_Halcinonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201826502-1878095 09B06_rep_D_Halcinonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEP2_50EV_RA6_01_22524.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_C11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/608.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12C13_Replicate1_Level1_MSMS_neg.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person15_blood_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 100 (Person15_blood_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6E06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152614252-1576988 Batch1_CALU6_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092237403-1878744 14B07_rep_A_Trifluridinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092237403-1878744 14B07_rep_A_Trifluridinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/iscU_P4E5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (iscU_P4E5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_C4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125151583-1862832 03E08_rep_C_Tibolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125151583-1862832 03E08_rep_C_Tibolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G06Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_133_1C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ttdB_P4B2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (ttdB_P4B2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_196.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_C8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_H5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GC4_01_11651.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_plasma_1h_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer4_plasma_1h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151741514-1576575 Batch3_NCIH2228_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153004190-1868400 06F11_rep_A_Dinoprost_trometamola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153004190-1868400 06F11_rep_A_Dinoprost_trometamola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/255.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121803104-1867108 04D08_rep_C_Labetalol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121803104-1867108 04D08_rep_C_Labetalol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114241056-1922879 4_H4_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114241056-1922879 4_H4_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007533_031618-1Thr3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092214453-1878726 14D06_rep_A_(R)-Propranolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092214453-1878726 14D06_rep_A_(R)-Propranolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Sanguibacter_sp__BM5A020.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gsiB_P4A12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (gsiB_P4A12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_106.mzXML at line 689
Premature end of data in tag peaks line 21459, line 21463, column 7748 (20121114_106.mzXML, line 21463)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D4_id_MSn_negative.mzML at line 21
index 321 is out of bounds for axis 0 with size 321
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_E9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111554351-1871551 10A07_rep_B_Mephentermine_hemisulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111554351-1871551 10A07_rep_B_Mephentermine_hemisulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113330806-1922396 2_D10_IZH2_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113330806-1922396 2_D10_IZH2_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G14_id_negative.mzML at line 21
index 259 is out of bounds for axis 0 with size 259
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person03_blood_youth_POS.mzXML at line 689
attributes construct error, line 41, column 101 (Person03_blood_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210330_AD_44.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ykgE_P4G3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ykgE_P4G3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087872/ccms_peak/MassIVE - Matthaei + Herbarium datasets/Boswellia-sucra-stem-nBuOH.mzML at line 689
Premature end of data in tag spectrumList line 72, line 148233, column 1 (Boswellia-sucra-stem-nBuOH.mzML, line 148233)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_377.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD1_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123704033-1876224 08B10_rep_C_Lacidipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123704033-1876224 08B10_rep_C_Lacidipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201414600-1877909 09F07_rep_C_Ethotoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201414600-1877909 09F07_rep_C_Ethotoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D2_preFOS_1_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007563_031718-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100234339-1868888 06G06_rep_D_Tosufloxacin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100234339-1868888 06G06_rep_D_Tosufloxacin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124412169-1862350 03E01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124412169-1862350 03E01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202318226-1878323 10F08_rep_A_Alexidine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202318226-1878323 10F08_rep_A_Alexidine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150713757-1864930 02C10_rep_C_Dizocilpine maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150713757-1864930 02C10_rep_C_Dizocilpine maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnN_P4E7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (phnN_P4E7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_120.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153605697-1577471 Batch4_RT4_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/27_D25062013T0033_1399CBU_0001_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180827_ES_H3K_batch11_repA_162.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150837234-1864995 02D02_rep_D_Naloxone hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150837234-1864995 02D02_rep_D_Naloxone hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EBM012B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111624760-1871574 10E03_rep_B_Sulfapyridineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111624760-1871574 10E03_rep_B_Sulfapyridineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F9_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S75.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S75.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_1mM_L_AC_AS_Neg.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_1mM_L_AC_AS_Neg.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123308940-1876035 08B10_rep_B_Lacidipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123308940-1876035 08B10_rep_B_Lacidipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153811370-1577576 Batch6_SF539_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD4_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H11_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_cell lysate/mzML/Vector_Bai_noxyl_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F2_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150641667-1924519 2_E11_RGT2_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150641667-1924519 2_E11_RGT2_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101758929-1869627 07D03_rep_D_Iohexola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101758929-1869627 07D03_rep_D_Iohexola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/carA_P5B6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (carA_P5B6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N6_id_MSn_positive.mzML at line 21
index 535 is out of bounds for axis 0 with size 535
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_96.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/011_20uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_0126_190128182022.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152123047-1867999 05F05_rep_C_Methylergometrine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152123047-1867999 05F05_rep_C_Methylergometrine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092358190-1878807 14F09_rep_A_Sarafloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092358190-1878807 14F09_rep_A_Sarafloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153433048-1577395 Batch5_SW620_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122607608-1880003 15A07_rep_D_Clavulanate_potassium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122607608-1880003 15A07_rep_D_Clavulanate_potassium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150322457-1924350 1_E4_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150322457-1924350 1_E4_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ3_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET49.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET49.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_123a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151631250-1576516 Batch7_HCC38_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_rerun_BA4_01_11608.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case61_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case61_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092525163-1878875 14C09_rep_B_Thiethylperazine_dimalate_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092525163-1878875 14C09_rep_B_Thiethylperazine_dimalate_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Vibrio_coralliilyticus_S2052_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ulaB_P6B6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (ulaB_P6B6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121326186-1866894 04B05_rep_B_Nortriptyline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121326186-1866894 04B05_rep_B_Nortriptyline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088261/raw/210916_tanaka12.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F21_id_MSn_negative.mzML at line 21
index 295 is out of bounds for axis 0 with size 295
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113713127-1922589 3_A5_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113713127-1922589 3_A5_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130539168-1877519 13H11_rep_C_Pyrvinium_pamoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130539168-1877519 13H11_rep_C_Pyrvinium_pamoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112847476-1922192 4_A4_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112847476-1922192 4_A4_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150418064026.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G09P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-qc_elow.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_O12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_D9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/relA_P3A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (relA_P3A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111900292-1921680 2_H11_GAP1_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111900292-1921680 2_H11_GAP1_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control108_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control108_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B2_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151547113-1576479 Batch7_HCC38_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H15_id_MSn_negative.mzML at line 21
index 309 is out of bounds for axis 0 with size 309
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111718845-1871616 10C07_rep_B_Glycopyrrolateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111718845-1871616 10C07_rep_B_Glycopyrrolateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122810499-1880099 15D06_rep_D_Triclosanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122810499-1880099 15D06_rep_D_Triclosanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078960/ccms_peak/blank-Pmix_SPL-GT47-6+5+4_RA1_01_19802.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111611007-1921534 1_C11_GAP1_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111611007-1921534 1_C11_GAP1_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222723643-1869807 01D04_rep_A_Diprophyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222723643-1869807 01D04_rep_A_Diprophyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2L004B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person14_blood_youth_POS.mzXML at line 689
attributes construct error, line 41, column 101 (Person14_blood_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rpiB_P4E4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (rpiB_P4E4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/suchms_metB_P3C1_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (suchms_metB_P3C1_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091721735-1878496 13B06_rep_D_Naftopidil_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091721735-1878496 13B06_rep_D_Naftopidil_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/004_Nitrate_Day2_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152250007-1576823 Batch2_NCIH2122_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153517195-1577431 Batch4_977_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydcU_P3D3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (ydcU_P3D3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153632740-1868703 06G03_rep_C_Cefiximeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153632740-1868703 06G03_rep_C_Cefiximeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D4_id_MSn_negative.mzML at line 21
index 295 is out of bounds for axis 0 with size 295
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_19073146_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_C9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dgkA_P4E6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (dgkA_P4E6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122039022-1879752 15A06_rep_B_Fleroxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122039022-1879752 15A06_rep_B_Fleroxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151554307-1576485 Batch7_NCIH226_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N7.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130508938-1877495 13G04_rep_C_Isometheptene_mucatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130508938-1877495 13G04_rep_C_Isometheptene_mucatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223410640-1870114 01H01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223410640-1870114 01H01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202236901-1878290 10G08_rep_A_Merbromina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202236901-1878290 10G08_rep_A_Merbromina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_31_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_31_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151326815-1576363 Batch6_SR8714_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3F07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_B1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122657827-1880042 15A08_rep_D_Valproic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122657827-1880042 15A08_rep_D_Valproic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114210190-1874876 11E03_rep_D_Trimeprazine_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114210190-1874876 11E03_rep_D_Trimeprazine_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122447118-1867431 04G08_rep_D_Oxytetracycline_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122447118-1867431 04G08_rep_D_Oxytetracycline_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152719778-1577043 Batch2_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_16_Liver_CMC_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 88 (Mouse_16_Liver_CMC_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/cal_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153447808-1577407 Batch5_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_101.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081555/ccms_peak/FullSpectra-mzML/B031_GenbankAccession-KY858239.mzML at line 689
Extra content at the end of the document, line 229206, column 1 (B031_GenbankAccession-KY858239.mzML, line 229206)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153452694-1577411 Batch5_A704_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_47.mzXML at line 689
Premature end of data in tag peaks line 19198, line 19202, column 11844 (20121114_47.mzXML, line 19202)
Error processing file: /data/datasets/server/MassIVE/MSV000087069/ccms_peak/BRB Liquid Convert pos/BBR_R17500_N70_I10e4_E10_pos_06292020.mzML at line 689
Premature end of data in tag binary line 220181, line 220181, column 238421 (BBR_R17500_N70_I10e4_E10_pos_06292020.mzML, line 220181)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A9_id.mzML at line 21
index 572 is out of bounds for axis 0 with size 572
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J4_id.mzML at line 21
index 530 is out of bounds for axis 0 with size 530
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B14_id_MSn_positive.mzML at line 21
index 466 is out of bounds for axis 0 with size 466
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165741215-2227492 PAT35.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4G01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079598/ccms_peak/AMG_UKG/AMG_UKG_DB_Tracefinder.csv at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHF19.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/39.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153340710-1868566 06E08_rep_B_Hydrocortisone_basea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153340710-1868566 06E08_rep_B_Hydrocortisone_basea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114138012-1874850 11B03_rep_D_Cromolyn_disodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114138012-1874850 11B03_rep_D_Cromolyn_disodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/006_Ammonia_Day7_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB4G02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample179_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145641969-1863956 02E05_rep_A_Tioconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145641969-1863956 02E05_rep_A_Tioconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152530525-1576952 Batch1_CALU1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_245.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_A5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125608732-1877080 12C06_rep_D_Urapidil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125608732-1877080 12C06_rep_D_Urapidil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100648192-1869090 07H04_rep_A_Pentamidine_isethionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100648192-1869090 07H04_rep_A_Pentamidine_isethionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gntT_P5B7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (gntT_P5B7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121700033-1879586 15H05_rep_A_Rufloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121700033-1879586 15H05_rep_A_Rufloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1F07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc065_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc065_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C3_id_MSn_positive.mzML at line 21
index 578 is out of bounds for axis 0 with size 578
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Photobacterium_halotolerans_S2753_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1114.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130105790-1877306 13D09_rep_B_Zuclopenthixol_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130105790-1877306 13D09_rep_B_Zuclopenthixol_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30119 - GI-14-974.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152641750-1868243 06C08_rep_A_Dibenzepine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152641750-1868243 06C08_rep_A_Dibenzepine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_G10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/296.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_C5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_158.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210120_AD_67.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_24.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_24.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202058903-1878213 09E07_rep_D_Tigecyclineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202058903-1878213 09E07_rep_D_Tigecyclineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1116.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control169_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control169_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8D01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121753192-1867100 04F05_rep_C_Pimethixene_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121753192-1867100 04F05_rep_C_Pimethixene_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB1B13.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153328145-1868556 06B02_rep_B_Androsteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153328145-1868556 06B02_rep_B_Androsteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113930223-1874747 11H04_rep_D_Theophylline_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113930223-1874747 11H04_rep_D_Theophylline_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Liver_raw files/Lumos_ISAS_liver_QC3.mzML at line 689
Premature end of data in tag spectrumList line 92, line 44704, column 1 (Lumos_ISAS_liver_QC3.mzML, line 44704)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125420844-1862953 03A01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125420844-1862953 03A01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121533477-1879519 15F06_rep_A_Losartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121533477-1879519 15F06_rep_A_Losartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD6_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122718207-1867553 05B01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122718207-1867553 05B01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gloB_#1_P5H1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (gloB_#1_P5H1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0042_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0042_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124146148-1862234 03G04_rep_A_Xylometazoline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124146148-1862234 03G04_rep_A_Xylometazoline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_17_AC+_48.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112802067-1874243 11A10_rep_A_Dichlorphenamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112802067-1874243 11A10_rep_A_Dichlorphenamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1140.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180628_ES_H3K_bacth8_repC_111.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092536278-1878884 14E06_rep_B_Topiramatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092536278-1878884 14E06_rep_B_Topiramatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152917003-1577142 Batch3_A498_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112354632-1874046 10G06_rep_D_Dicumarola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112354632-1874046 10G06_rep_D_Dicumarola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F8_id_MSn_negative.mzML at line 21
index 322 is out of bounds for axis 0 with size 322
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125951221-1877252 13A05_rep_A_Methacycline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125951221-1877252 13A05_rep_A_Methacycline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_MICU_187_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150749788-1924578 2_H3_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150749788-1924578 2_H3_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_19040307_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201220_LKM_20to1_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_E2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111500364-1921088 1_E10_GAP1_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111500364-1921088 1_E10_GAP1_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152613750-1868221 05B10_rep_D_Guanfacine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152613750-1868221 05B10_rep_D_Guanfacine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I4_id_MSn_negative.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152241198-1576816 Batch2_NCIH2172_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/244.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201011145-1877731 09A10_rep_B_Etanidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201011145-1877731 09A10_rep_B_Etanidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200822489-1881645 16H11_rep_A_Cefprozila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200822489-1881645 16H11_rep_A_Cefprozila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I14_id_negative.mzML at line 21
index 260 is out of bounds for axis 0 with size 260
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GA11_01_17019.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/tagdpD_gatZ_P3D6_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (tagdpD_gatZ_P3D6_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112323024-1921906 3_E3_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112323024-1921906 3_E3_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR224h3a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 18396, column 9833 (pBpumR224h3a.mzML, line 18396)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/001_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222742555-1869821 01E07_rep_A_Naphazoline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222742555-1869821 01E07_rep_A_Naphazoline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088138/raw/210916_tanaka08.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNB091_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122313189-1867355 04G07_rep_D_Clemastine_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122313189-1867355 04G07_rep_D_Clemastine_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123040529-1867711 05A09_rep_B_Zoxazolamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123040529-1867711 05A09_rep_B_Zoxazolamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150016448-1864128 02F04_rep_B_Hydroxyzine dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150016448-1864128 02F04_rep_B_Hydroxyzine dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152658319-1577025 Batch1_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151611066-1576499 Batch7_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_C9_id_positive.mzML at line 21
index 411 is out of bounds for axis 0 with size 411
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample077.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112534903-1874126 10H02_rep_D_(R)_-Naproxen_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112534903-1874126 10H02_rep_D_(R)_-Naproxen_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150337994-1924363 1_B11_RGT2_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150337994-1924363 1_B11_RGT2_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNT302_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_G6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092629298-1878925 14D10_rep_B_Methicillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092629298-1878925 14D10_rep_B_Methicillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150429870-1864803 02B09_rep_C_Acetylsalicylsalicylic acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150429870-1864803 02B09_rep_C_Acetylsalicylsalicylic acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125623176-1863052 03E09_rep_D_Trimethoprim_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125623176-1863052 03E09_rep_D_Trimethoprim_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM5L001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_cc2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125456648-1862982 03F11_rep_D_Indapamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125456648-1862982 03F11_rep_D_Indapamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152639294-1577009 Batch1_7860_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090213/ccms_peak/9March2022_006_VH RT Trang 10x_neg .mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_blood_4h_NEG.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer1_blood_4h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113105394-1922270 1_A11_IZH2_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113105394-1922270 1_A11_IZH2_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_96.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C12_id_MSn_positive.mzML at line 21
index 427 is out of bounds for axis 0 with size 427
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/470-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/825.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hC2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hC2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_101.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122115908-1879780 15F09_rep_B_Telmisartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122115908-1879780 15F09_rep_B_Telmisartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092347616-1878799 14H03_rep_A_Procarbazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092347616-1878799 14H03_rep_A_Procarbazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100442324-1868989 06D08_rep_D_Digoxina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100442324-1868989 06D08_rep_D_Digoxina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153001916-1577180 Batch3_SCABER_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150002567-1864118 02H06_rep_B_Paclitaxelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150002567-1864118 02H06_rep_B_Paclitaxelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_47_AC+_20.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151754472-1576585 Batch4_DMS53_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8H08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151622974-1576509 Batch7_SKMES1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_114.mzXML at line 689
Premature end of data in tag peaks line 23533, line 23537, column 15940 (20121114_114.mzXML, line 23537)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_F4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201641998-1882015 16B10_rep_C_Felbamatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201641998-1882015 16B10_rep_C_Felbamatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H6_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113753728-1922624 3_D10_STE2_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113753728-1922624 3_D10_STE2_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/BUD1_30EV_RA3_01_22720.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaO_P3E4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (waaO_P3E4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114853719-1875195 12H04_rep_B_(R)-(+)-Atenololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114853719-1875195 12H04_rep_B_(R)-(+)-Atenololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093220333-1879197 14H07_rep_C_Dorzolamide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093220333-1879197 14H07_rep_C_Dorzolamide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091642170-1878465 13D02_rep_D_Gliquidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091642170-1878465 13D02_rep_D_Gliquidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121901896-1867154 04D02_rep_C_Vincaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121901896-1867154 04D02_rep_C_Vincaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112052133-1921775 2_F2_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112052133-1921775 2_F2_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_16_NOR_47.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_16_NOR_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_091b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152025881-1576709 Batch1_NCIH2073_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153634460-1577495 Batch4_ASPC1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNT360_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/C48_I_ESI-.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223920485-2227705 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112137464-1921814 2_H9_GAP1_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112137464-1921814 2_H9_GAP1_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122419858-1867409 04E02_rep_D_Fludrocortisone_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122419858-1867409 04E02_rep_D_Fludrocortisone_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091731719-1878504 13D11_rep_D_Lymecyclinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091731719-1878504 13D11_rep_D_Lymecyclinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201347813-1881887 16B09_rep_B_Altrenogesta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201347813-1881887 16B09_rep_B_Altrenogesta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD1_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Kideny_raw files/ISAS_Lumos_kidney_Labeled_1.mzML at line 689
Premature end of data in tag spectrumList line 92, line 74869, column 1 (ISAS_Lumos_kidney_Labeled_1.mzML, line 74869)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201613914-1881994 16C09_rep_C_Actaritb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201613914-1881994 16C09_rep_C_Actaritb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092013642-1878632 13G02_rep_D_Isradipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092013642-1878632 13G02_rep_D_Isradipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arsC_#2_P4C9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (arsC_#2_P4C9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_16061440_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_blood_24h_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Volunteer1_blood_24h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpC_#4_P3C12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (atpC_#4_P3C12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210313_LKM_mb_rapid_beads_40min_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095328/peak/MS_RAW_data/230811_BBT301_control_TPP_HighPH_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S25_0126_190127185447.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_85.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151130448-1576267 Batch5_SBC5_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150709404-1924543 2_E7_RGT2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150709404-1924543 2_E7_RGT2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_135.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_135.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1094.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD4_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_98.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201339376-1877883 09E04_rep_C_Pempidine_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201339376-1877883 09E04_rep_C_Pempidine_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152022123-1576706 Batch1_BT549_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_63.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201639416-1878014 09E03_rep_C_Secnidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201639416-1878014 09E03_rep_C_Secnidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091836896-1878556 13B04_rep_D_Pirlindole_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091836896-1878556 13B04_rep_D_Pirlindole_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K9_id.mzML at line 21
index 567 is out of bounds for axis 0 with size 567
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151214690-1576303 Batch5_PC9_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112835386-1922181 4_B11_GPR1_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112835386-1922181 4_B11_GPR1_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpG_P4A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (atpG_P4A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/002_Urea_Day4_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_106.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_106.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113114780-1922278 1_E4_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113114780-1922278 1_E4_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007681_032118-1CRP6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172701535-1889916 NNa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_39.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_39.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223724106-2227604 Healthy7.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uxuA_P5E4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (uxuA_P5E4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223135860-1869997 01C03_rep_B_Panthenol (D)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223135860-1869997 01C03_rep_B_Panthenol (D)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170209_056ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/15/7cc0f349620c2e22083ed36e4335cb/input_file/SH10_20170209_056ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_86.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223736700-1870272 01A03_rep_C_Allantoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223736700-1870272 01A03_rep_C_Allantoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GE5_01_11515.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152150586-1576776 Batch1_HCC1806_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224003523-1870385 01G01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224003523-1870385 01G01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L7_id_MSn_positive.mzML at line 21
index 704 is out of bounds for axis 0 with size 704
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C8_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_0124_190125061426.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122352260-1879899 15G08_rep_C_Docetaxelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122352260-1879899 15G08_rep_C_Docetaxelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180821_ES_H3K_batch10_repA_140.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D20_id_negative.mzML at line 21
index 269 is out of bounds for axis 0 with size 269
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroP_P3A8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (aroP_P3A8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/550-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080030/ccms_peak/Forensic_study_80_volunteers/Forensic_Objects_mzXML/Forensic_Objects_plate_E_mzXML/.DS_Store at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_13.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_13.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152636964-1577007 Batch1_7860_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223613123-1870208 01C02_rep_C_Sulfaphenazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223613123-1870208 01C02_rep_C_Sulfaphenazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_D7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M18_id_MSn_positive.mzML at line 21
index 558 is out of bounds for axis 0 with size 558
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081999/updates/2018-01-30_aaksenov_de8234c5/peak/Round1/A39_RA9_01_7048.mzXML at line 689
Invalid character: Char 0x0 out of allowed range
, line 13564, column 2713 (A39_RA9_01_7048.mzXML, line 13564)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113820810-1922648 3_F2_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113820810-1922648 3_F2_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114334891-1922927 4_H11_STE2_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114334891-1922927 4_H11_STE2_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD5_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD4_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/937.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD1_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_A9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151213471-1576302 Batch5_PC9_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case194_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case194_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB1H11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample072_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153905867-1577622 Batch7_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlA1b.mzXML at line 689
expected '>', line 718, column 10 (ExtraControlA1b.mzXML, line 718)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample148.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_46_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_46_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122921958-1867652 05G09_rep_B_Dequalinium_dichloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122921958-1867652 05G09_rep_B_Dequalinium_dichloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153513462-1577428 Batch4_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD4_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A18_id_MSn_positive.mzML at line 21
index 462 is out of bounds for axis 0 with size 462
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152140500-1576768 Batch2_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sodC_P3H3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (sodC_P3H3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tauA_P3A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (tauA_P3A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152540246-1576960 Batch1_CALU3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5T4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5T4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J3_id_negative.mzML at line 21
index 270 is out of bounds for axis 0 with size 270
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ1_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ4_1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200534261-1881521 16B07_rep_A_Tegafura.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200534261-1881521 16B07_rep_A_Tegafura.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1083.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151444522-1576428 Batch6_MOLT4_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_L9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/348.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpMat1_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/208-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_C10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100145086-1868850 06B10_rep_D_Bisacodylb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100145086-1868850 06B10_rep_D_Bisacodylb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100448650-1868994 06G01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100448650-1868994 06G01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHE02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123023133-1867699 05E11_rep_B_Benzbromaroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123023133-1867699 05E11_rep_B_Benzbromaroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pabC_P4H4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (pabC_P4H4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_38_RIN_48.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_38_RIN_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009514_IBD200_E10_B10.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD1_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S81.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S81.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/275.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123310163-1876036 08B08_rep_B_Escitalopram_oxalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123310163-1876036 08B08_rep_B_Escitalopram_oxalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190117_ES_H3K_batch14_repA_202.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ldtC_#2_P4H1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (ldtC_#2_P4H1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114052342-1874813 11G04_rep_D_Ciclesonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114052342-1874813 11G04_rep_D_Ciclesonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malF_P5B4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (malF_P5B4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152041187-1576721 Batch1_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_48.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample052_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_102.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/314.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151910152-1576648 Batch7_NCIH1693_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_129b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121727865-1879607 15H10_rep_B_Acetylsalicylic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121727865-1879607 15H10_rep_B_Acetylsalicylic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153049627-1868432 06B06_rep_B_Modafinila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153049627-1868432 06B06_rep_B_Modafinila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (7).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130212745-1877358 13D01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130212745-1877358 13D01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_74_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_74_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/311.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F9_id_MSn_negative.mzML at line 21
index 321 is out of bounds for axis 0 with size 321
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123112680-1875942 08G11_rep_A_Dimethisoquin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123112680-1875942 08G11_rep_A_Dimethisoquin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G18_id_negative.mzML at line 21
index 246 is out of bounds for axis 0 with size 246
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152237381-1576813 Batch2_NCIH2085_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121939050-1879706 15C11_rep_B_Fluconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121939050-1879706 15C11_rep_B_Fluconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET34.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET34.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D13_id_negative.mzML at line 21
index 264 is out of bounds for axis 0 with size 264
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_63.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_blood_0h_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Volunteer1_blood_0h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150253981-1864730 02B01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150253981-1864730 02B01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike3_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201742990-1878062 09H08_rep_C_Finasteridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201742990-1878062 09H08_rep_C_Finasteridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/167-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/021_CRa_H9M5_M470_L03_K2_low_pos.mzXML at line 689
Premature end of data in tag peaks line 14460, line 14464, column 36343 (021_CRa_H9M5_M470_L03_K2_low_pos.mzXML, line 14464)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122916078-1875850 08C05_rep_A_Yohimbine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122916078-1875850 08C05_rep_A_Yohimbine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114632061-1875083 12C01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114632061-1875083 12C01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097448/updates/2025-05-29_amsidebottom_3d270e8d/raw/GC1410_379_1207/026__20221027__GC379S__3804-Sre__dil.mzML at line 689
Premature end of data in tag indexedmzML line 2, line 8184, column 1 (026__20221027__GC379S__3804-Sre__dil.mzML, line 8184)
Error processing file: /data/datasets/server/MassIVE/MSV000095328/peak/MS_RAW_data/230811_BBT301_TPP_HighPH_8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124835161-1862675 03G02_rep_B_Norfloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124835161-1862675 03G02_rep_B_Norfloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lgoD_P3H11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (lgoD_P3H11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092245977-1878751 14C06_rep_A_Milrinoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092245977-1878751 14C06_rep_A_Milrinoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091773/raw/Volf_Salix_MassIVE/MV00163_SALIFR.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123232264-1876006 08F04_rep_B_Diosmina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123232264-1876006 08F04_rep_B_Diosmina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121755486-1867102 04A09_rep_C_Clonidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121755486-1867102 04A09_rep_C_Clonidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_398.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/adeP_P3H2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (adeP_P3H2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person09_plasma_elder_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person09_plasma_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097681/peak/amino acids/030521-b1-OV-5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100930741-1869220 07F11_rep_A_Clorsulonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100930741-1869220 07F11_rep_A_Clorsulonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_xx2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153657217-1577514 Batch5_HCT15_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_78.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_12_liver_RESV_skin_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_12_liver_RESV_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1049.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD1_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121541471-1879525 15H11_rep_A_Hexachloropheneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121541471-1879525 15H11_rep_A_Hexachloropheneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152944225-1577165 Batch5_NCIH2347_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151256772-1576338 Batch5_SBC5_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_67.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150525760-1924454 1_A3_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150525760-1924454 1_A3_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151158340-1924792 3_E2_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151158340-1924792 3_E2_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M8_id_MSn_negative.mzML at line 21
index 311 is out of bounds for axis 0 with size 311
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124829674-1876734 12B09_rep_C_Dioxybenzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124829674-1876734 12B09_rep_C_Dioxybenzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100643356-1869086 07H06_rep_A_Nifuroxazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100643356-1869086 07H06_rep_A_Nifuroxazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152325355-1576851 Batch2_NCIH358_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_88.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102126837-1869796 07H02_rep_D_Hexetidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102126837-1869796 07H02_rep_D_Hexetidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170125_054EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/59/da1bb6413fd205fb0650c526cde535/input_file/QC_20170125_054EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130713749-1877594 13F01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130713749-1877594 13F01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GF8_01_11710.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/293.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GA11_01_11625.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000083989/updates/2019-07-18_Tongchai_9989dd7a/raw/180323_PMA_TS_BC_S_02_B_neg.mzXML at line 689
Premature end of data in tag peaks line 70739, line 70743, column 2108 (180323_PMA_TS_BC_S_02_B_neg.mzXML, line 70743)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/435.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_B3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_H3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person18_blood_elder_POS.mzXML at line 689
attributes construct error, line 41, column 83 (Person18_blood_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person28_plasma_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person28_plasma_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cdh_P4B10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (cdh_P4B10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_22_CNR_53.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_22_CNR_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Hono_Glu_LbUGT3_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6C07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151044245-1924728 3_F7_SNF3_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151044245-1924728 3_F7_SNF3_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/124-4_Ms_25min__GE5_01_4170.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_62.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_203.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150710095-1864927 02A03_rep_C_Fulvestrantb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150710095-1864927 02A03_rep_C_Fulvestrantb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092617843-1878916 14G08_rep_B_Ramiprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092617843-1878916 14G08_rep_B_Ramiprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153933002-1577645 Batch6_OVCAR8_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100708381-1869107 07H02_rep_A_Hexetidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100708381-1869107 07H02_rep_A_Hexetidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case258_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case258_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152049902-1576728 Batch1_MDAMB436_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EBM014.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/004_1018_3_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009763_IBD200_E23_A3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125612044-1863043 03F05_rep_D_Gemfibrozilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125612044-1863043 03F05_rep_D_Gemfibrozilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V6_LH.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151242441-1576326 Batch5_NCIH446_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145739915-1864003 02C03_rep_A_Amoxapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145739915-1864003 02C03_rep_A_Amoxapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122511664-1867451 04C10_rep_D_Clomipramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122511664-1867451 04C10_rep_D_Clomipramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0011_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170207_019EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/6f/35fbde9864573380cdb6d0ccbb3ade/input_file/MMW4_20170207_019EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_75.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_A11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094443/ccms_peak/All Egg Mass/1A5A_MSMS.mzML at line 689
Premature end of data in tag binary line 44089, line 44089, column 438218 (1A5A_MSMS.mzML, line 44089)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201043332-1881749 16D10_rep_B_Dofetilidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201043332-1881749 16D10_rep_B_Dofetilidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081118/ccms_peak/Beers19_ms2ldaPLUS/NEGmode/Beer_multibeers_8_T10_NEG.mzXML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151526702-1576462 Batch7_HARA_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD2_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_E5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_C11_id_negative.mzML at line 21
index 269 is out of bounds for axis 0 with size 269
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114810718-1875160 12F05_rep_B_Flucytosinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114810718-1875160 12F05_rep_B_Flucytosinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/901.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/blank3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082760/ccms_peak/MTBLS198/raw/MTBLS198/JALI118DietC_V3.mzXML at line 689
Premature end of data in tag peaks line 9192, line 9196, column 3565 (JALI118DietC_V3.mzXML, line 9196)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_aqueous_longstudy_230215_169.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222918524-1869894 01H09_rep_A_Thioridazine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222918524-1869894 01H09_rep_A_Thioridazine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_120.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2C08Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150420880-1864796 02A08_rep_C_Diazoxidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150420880-1864796 02A08_rep_C_Diazoxidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_19032111_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_68_CNR_15.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_68_CNR_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_C3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2E02P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/puuP_#1_P4G1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (puuP_#1_P4G1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150817971-1924602 2_F7_RGT2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150817971-1924602 2_F7_RGT2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Caballeronia_LYG015B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_82.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI3_2_14_1_883.mzML at line 689
AttValue: " or ' expected, line 3900511, column 31 (50130_microPOTS_Rat_Brain_ROI3_2_14_1_883.mzML, line 3900511)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124501115-1876608 09B10_rep_A_6-Furfurylaminopurinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124501115-1876608 09B10_rep_A_6-Furfurylaminopurinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoC_P3E10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (nuoC_P3E10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/198-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_2_RESV_20uM_POS.mzXML at line 689
attributes construct error, line 38, column 82 (HepG2_2_RESV_20uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_115_3C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc016_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc016_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101039696-1869275 07E02_rep_B_Lofexidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101039696-1869275 07E02_rep_B_Lofexidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_4_B_rep_4_B-D7_1_5669.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2C5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2C5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/94.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_14.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_14.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw3_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090904/raw/2022Aug_BSH.KO&WT_treated.CA_B.Frag/20220822_Bipin_conjBA_neg36_BSH_CA_06.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000090904/raw/2022Aug_BSH.KO&WT_treated.CA_B.Frag/20220822_Bipin_conjBA_neg36_BSH_CA_06.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_YP_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET39.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET39.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090549/updates/2023-02-07_bsedio_eb5d1a0f/peak/Madidi_mzXML/MDP0831.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101236136-1869368 07H03_rep_B_Selegiline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101236136-1869368 07H03_rep_B_Selegiline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MSB05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_101.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_08_dorsal_skin_control_skin_POS.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_08_dorsal_skin_control_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdsC_P5D4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (kdsC_P5D4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153247256-1577309 Batch5_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111938517-1872592 10D07_rep_C_Diethylstilbestrolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111938517-1872592 10D07_rep_C_Diethylstilbestrolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mhpA_#2_P3A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (mhpA_#2_P3A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_115.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_115.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_H2_01_12178.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Catechin_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/892.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpMat2_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125834640-1863161 04F08_rep_A_Benzydamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125834640-1863161 04F08_rep_A_Benzydamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151538721-1576472 Batch7_HARA_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control108_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control108_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_02062001_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125325005-1876955 12C01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125325005-1876955 12C01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153436825-1577398 Batch5_NCIH727_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125047464-1876837 12H06_rep_C_Florfenicola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125047464-1876837 12H06_rep_C_Florfenicola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1427.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1427.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_90.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_90.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201330215-1881874 16H06_rep_B_Valsartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201330215-1881874 16H06_rep_B_Valsartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_E8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122316975-1879872 15A07_rep_C_Clavulanate_potassium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122316975-1879872 15A07_rep_C_Clavulanate_potassium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/CORN_AD2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroF_P3F5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (aroF_P3F5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/crr_P4E5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (crr_P4E5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_122.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125055659-1862787 03B02_rep_C_Tranexamic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125055659-1862787 03B02_rep_C_Tranexamic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/astD_P3E4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (astD_P3E4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L74cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L74cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_C1_01_12200.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122332508-1879884 15B05_rep_C_Anethole-trithionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122332508-1879884 15B05_rep_C_Anethole-trithionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121334114-1866900 04F07_rep_B_Acemetacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121334114-1866900 04F07_rep_B_Acemetacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170207_027EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/62/1fd7bee3ed3abfd311986daf5136f6/input_file/SH8_20170207_027EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240408_pluskal_enammol_5002_B1_id_MSn_positive_20240408121751.mzML at line 21
index 674 is out of bounds for axis 0 with size 674
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ7_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_protogens_EB2L004C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/cal_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190339315-1889801 NNb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223151994-1870009 01E02_rep_B_Procaine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223151994-1870009 01E02_rep_B_Procaine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/001_Nitrate_Day9_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GC4_01_17165.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201237394-1881834 16D06_rep_B_Cefpiramideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201237394-1881834 16D06_rep_B_Cefpiramideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150243433-1864722 02F06_rep_B_Methotrexatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150243433-1864722 02F06_rep_B_Methotrexatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112214961-1873581 10B03_rep_D_Streptozotocina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112214961-1873581 10B03_rep_D_Streptozotocina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_107b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ynfE_#1_P3H3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (ynfE_#1_P3H3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_E12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc067_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc067_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample208_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fepD_P4D2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (fepD_P4D2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acuI_#2_P4A2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (acuI_#2_P4A2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000091918/raw/K2_R2_P.mzML at line 255
Error -3 while decompressing data: incorrect data check
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_60.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092841529-1879027 14C01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092841529-1879027 14C01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223252147-1870054 01G03_rep_B_Homatropine hydrobromide (R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223252147-1870054 01G03_rep_B_Homatropine hydrobromide (R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR224h2a.mzML at line 689
Opening and ending tag mismatch: scanList line 24070 and binaryDataArray, line 24075, column 31 (pBpumR224h2a.mzML, line 24075)
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_53.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_53.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_163.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124034898-1876392 08H02_rep_D_Alendronate_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124034898-1876392 08H02_rep_D_Alendronate_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202541791-1878436 10E11_rep_A_Isopropamide_iodidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202541791-1878436 10E11_rep_A_Isopropamide_iodidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092115087-1878679 14H05_rep_A_Saquinavir_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092115087-1878679 14H05_rep_A_Saquinavir_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/595.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152335508-1576859 Batch2_NCIH2122_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125626985-1863055 03D05_rep_D_Nimesulideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125626985-1863055 03D05_rep_D_Nimesulideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009750_IBD200_E22_B4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7B04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_98.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNY243_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222809640-1869842 01G05_rep_A_Chlorpromazine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222809640-1869842 01G05_rep_A_Chlorpromazine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A5_id_MSn_positive.mzML at line 21
index 678 is out of bounds for axis 0 with size 678
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hD3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hD3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007617_032118-Unst3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152733822-1868283 06G03_rep_A_Cefiximeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152733822-1868283 06G03_rep_A_Cefiximeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122031351-1867225 04H01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122031351-1867225 04H01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_5_B_rep_4_B-E4_1_5547.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J2_id.mzML at line 21
index 512 is out of bounds for axis 0 with size 512
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124205526-1862249 03G08_rep_A_Clemizole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124205526-1862249 03G08_rep_A_Clemizole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlB2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlB2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086157/ccms_peak/Data20191206 uwashington mito inhibitor media and cell.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150719080-1864934 02C07_rep_C_Nicorandila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150719080-1864934 02C07_rep_C_Nicorandila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GC5_01_17042.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113956614-1874768 11C09_rep_D_Viloxazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113956614-1874768 11C09_rep_D_Viloxazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112958907-1874334 11C11_rep_B_Ethaverine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112958907-1874334 11C11_rep_B_Ethaverine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124905115-1862699 03H03_rep_B_Scopolamin-N-oxide_hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124905115-1862699 03H03_rep_B_Scopolamin-N-oxide_hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GA7_01_17140.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_23.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_23.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S33.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S33.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101550376-1869521 07E03_rep_C_Thiostreptona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101550376-1869521 07E03_rep_C_Thiostreptona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_A4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114217403-1922858 4_F10_STE2_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114217403-1922858 4_F10_STE2_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNB091_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ghxP_P4A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ghxP_P4A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fldB_#2_P5E12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (fldB_#2_P5E12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085272/raw/mzXML_Coral_Metabolome_2020/T1_1003.mzXML at line 689
Premature end of data in tag peaks line 22191, line 22195, column 2685 (T1_1003.mzXML, line 22195)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123532824-1876152 08B08_rep_C_Escitalopram_oxalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123532824-1876152 08B08_rep_C_Escitalopram_oxalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dacA_P4C10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (dacA_P4C10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/caiC_#3_P3A3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (caiC_#3_P3A3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample111.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123114973-1867738 05C07_rep_B_Maprotiline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123114973-1867738 05C07_rep_B_Maprotiline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092956105-1879087 14B03_rep_C_Iopanoic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092956105-1879087 14B03_rep_C_Iopanoic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sseA_#1_P5F6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (sseA_#1_P5F6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM6A010.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M8_id.mzML at line 21
index 577 is out of bounds for axis 0 with size 577
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201359760-1877898 09G08_rep_C_Diphenylpyraline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201359760-1877898 09G08_rep_C_Diphenylpyraline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088017/ccms_peak/12307-gsnor4-15_Treffon-005.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125115131-1876857 12C10_rep_C_Nabumetonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125115131-1876857 12C10_rep_C_Nabumetonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30255 - GI-19-061.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112227049-1921857 3_F8_GPR1_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112227049-1921857 3_F8_GPR1_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kefF_P3A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (kefF_P3A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130736799-1877612 13B09_rep_C_Memantine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130736799-1877612 13B09_rep_C_Memantine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/008_1217_2_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNT318_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yehX_P5G3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (yehX_P5G3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_G3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122355398-1867389 04B11_rep_D_Praziquantelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122355398-1867389 04B11_rep_D_Praziquantelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/016_1000uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113524431-1874550 11F08_rep_C_(+)_-Levobunolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113524431-1874550 11F08_rep_C_(+)_-Levobunolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114002561-1922738 3_F4_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114002561-1922738 3_F4_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125056770-1862788 03F09_rep_C_Fenbufena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125056770-1862788 03F09_rep_C_Fenbufena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223140026-1870000 01A03_rep_B_Allantoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223140026-1870000 01A03_rep_B_Allantoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121437194-1866947 04E06_rep_B_Chenodiolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121437194-1866947 04E06_rep_B_Chenodiolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I8_id.mzML at line 21
index 550 is out of bounds for axis 0 with size 550
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_C5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgk_P3D7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (pgk_P3D7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E16_id_MSn_positive.mzML at line 21
index 451 is out of bounds for axis 0 with size 451
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3C04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M12_id_negative.mzML at line 21
index 242 is out of bounds for axis 0 with size 242
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD6_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case223_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case223_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000085693/ccms_peak/MRM-validation cohort/BC MRM 1st batch.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150642882-1924520 2_E11_RGT2_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150642882-1924520 2_E11_RGT2_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150155041-1864685 02D09_rep_B_Nalbuphine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150155041-1864685 02D09_rep_B_Nalbuphine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD6_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dmsB_P3C3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (dmsB_P3C3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093246699-1879218 14F11_rep_C_Toltrazurila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093246699-1879218 14F11_rep_C_Toltrazurila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151227166-1924817 3_D1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151227166-1924817 3_D1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152444671-1576914 Batch2_MDAMB468_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ5_2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/63-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_04_686_prot_01_IMS_12Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091932103-1878600 13G03_rep_D_Nifekalanta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091932103-1878600 13G03_rep_D_Nifekalanta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111624609-1921546 1_E4_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111624609-1921546 1_E4_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M21_id_MSn_positive_20240503132038.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2C07Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-022_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/XYT-48d.mzXML at line 689
Premature end of data in tag peaks line 3969, line 3973, column 3575 (XYT-48d.mzXML, line 3973)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/ac_lpxC_P3G7_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024914 (ac_lpxC_P3G7_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_04_497_prot_35_IMS_14Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/151-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112959690-1922218 1_G5_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112959690-1922218 1_G5_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample196.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153530926-1868653 06A10_rep_C_Amiodarone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153530926-1868653 06A10_rep_C_Amiodarone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_481_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123804659-1876272 08F05_rep_C_Carbidopaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123804659-1876272 08F05_rep_C_Carbidopaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123551651-1876167 08A10_rep_C_Entacaponeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123551651-1876167 08A10_rep_C_Entacaponeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_127a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNQ149_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092155143-1878710 14A11_rep_A_Quinethazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092155143-1878710 14A11_rep_A_Quinethazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/betA_P3D1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (betA_P3D1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD3_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_cc6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201838534-1878104 09G04_rep_D_Famprofazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201838534-1878104 09G04_rep_D_Famprofazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pflB_P4D10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (pflB_P4D10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H9_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_D2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/83.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201021862-1881733 16A08_rep_B_Amorolfine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201021862-1881733 16A08_rep_B_Amorolfine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101949290-1869716 07D08_rep_D_Nystatineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101949290-1869716 07D08_rep_D_Nystatineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET79.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET79.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_G3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acpP_#3_P4E2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (acpP_#3_P4E2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080608.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E10_id_negative.mzML at line 21
index 270 is out of bounds for axis 0 with size 270
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124511780-1876616 09E04_rep_A_Pempidine_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124511780-1876616 09E04_rep_A_Pempidine_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112702101-1874195 11D01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112702101-1874195 11D01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101610470-1869537 07G02_rep_C_Ciclopirox_ethanolaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101610470-1869537 07G02_rep_C_Ciclopirox_ethanolaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30232 - GI-17-404.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152348455-1868110 05G04_rep_D_Nicardipine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152348455-1868110 05G04_rep_D_Nicardipine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD4_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223720317-1870259 01D02_rep_C_Chloramphenicola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223720317-1870259 01D02_rep_C_Chloramphenicola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007638_032118-0.01Thr4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_C4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114721035-1875121 12G07_rep_B_Altretamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114721035-1875121 12G07_rep_B_Altretamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/478-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170207_051EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/57/464c58756c960a13255e87907bd27c/input_file/SH9_20170207_051EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123045506-1875920 08H01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123045506-1875920 08H01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124325824-1862313 03D09_rep_A_Salbutamola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124325824-1862313 03D09_rep_A_Salbutamola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_RBC_0h_NEG.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer3_RBC_0h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/-ve_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/galU_P3G10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (galU_P3G10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O10_id_MSn_negative.mzML at line 21
index 308 is out of bounds for axis 0 with size 308
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113458417-1922473 2_C10_IZH2_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113458417-1922473 2_C10_IZH2_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person16_RBC_youth_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Person16_RBC_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/007_1029_1_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A14_id_MSn_positive_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092847242-1879032 14A04_rep_C_Penbutolol_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092847242-1879032 14A04_rep_C_Penbutolol_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210115_AD_5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007731_032318-5CRP6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cydB_#2_P5G1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (cydB_#2_P5G1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_41_AC+_30.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1318.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1318.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151336285-1576371 Batch6_CORL279_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122417391-1879918 15D04_rep_C_Mitotanea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122417391-1879918 15D04_rep_C_Mitotanea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152203289-1576786 Batch2_NCIH2172_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111852158-1921673 2_H10_GAP1_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111852158-1921673 2_H10_GAP1_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201902195-1878122 09D11_rep_D_Warfarina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201902195-1878122 09D11_rep_D_Warfarina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_55_150319145032.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2F06P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151319518-1924862 3_C7_SNF3_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151319518-1924862 3_C7_SNF3_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121402834-1879452 15F01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121402834-1879452 15F01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153558484-1577465 Batch4_NCIH2342_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EBM006A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190112_ES_H3K_batch13_repA_198.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/001_Soil_WaterExtra_2_Col2_JX_12172015_151217205508.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD6_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112540031-1922026 4_H2_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112540031-1922026 4_H2_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-5-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202015433-1882181 16E02_rep_D_Cefuroxime_axetila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202015433-1882181 16E02_rep_D_Cefuroxime_axetila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151232911-1576318 Batch5_NCIH446_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/ectoine_neg.mzXML at line 689
Premature end of data in tag peaks line 6967, line 6971, column 7662 (ectoine_neg.mzXML, line 6971)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gsiC_#2_P4H9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (gsiC_#2_P4H9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNT371_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000096940/peak/15_Human fecal community screening for EGT metabolism_targeted_HF24_TUA and 3-(2-thione-imidazol-4-yl)-propionic acid quantification_2.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092850814-1879035 14E07_rep_C_D-cycloserineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092850814-1879035 14E07_rep_C_D-cycloserineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD1_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5E09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153532094-1577443 Batch4_977_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223059244-1869969 01A04_rep_A_Acetazolamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223059244-1869969 01A04_rep_A_Acetazolamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122754235-1880086 15G01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122754235-1880086 15G01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E23_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114146263-1922830 4_B5_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114146263-1922830 4_B5_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007504_031618-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_E1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223950493-2227731 PAT45.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR27_5h2a.mzML at line 689
Opening and ending tag mismatch: binaryDataArray line 280956 and spectrum, line 280991, column 20 (pBlateR27_5h2a.mzML, line 280991)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B1_id.mzML at line 21
index 511 is out of bounds for axis 0 with size 511
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_61.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD3_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample057_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/blank_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112622682-1874164 11A07_rep_A_Trimipramine_maleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112622682-1874164 11A07_rep_A_Trimipramine_maleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/940.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114634640-1875085 12A08_rep_A_Oxybenzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114634640-1875085 12A08_rep_A_Oxybenzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224330058-1870546 01C06_rep_D_Thiamphenicolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224330058-1870546 01C06_rep_D_Thiamphenicolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124036198-1876393 08H02_rep_D_Alendronate_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124036198-1876393 08H02_rep_D_Alendronate_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E21_id_MSn_negative.mzML at line 21
index 322 is out of bounds for axis 0 with size 322
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123208117-1875987 08B11_rep_B_Argatrobanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123208117-1875987 08B11_rep_B_Argatrobanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_12_dorsal_skin_RESV_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_12_dorsal_skin_RESV_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_116a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153212592-1577281 Batch5_NCIH23_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/23_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L4_id_MSn_positive.mzML at line 21
index 290 is out of bounds for axis 0 with size 290
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130112293-1877311 13E02_rep_B_Alfadolone_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130112293-1877311 13E02_rep_B_Alfadolone_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124328633-1876532 09A08_rep_A_Rebamipidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124328633-1876532 09A08_rep_A_Rebamipidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/477-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111635147-1871582 10C11_rep_B_Mevalonic-D,_L_acid_lactoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111635147-1871582 10C11_rep_B_Mevalonic-D,_L_acid_lactoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122701974-1867540 05E05_rep_A_Metergolinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122701974-1867540 05E05_rep_A_Metergolinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHL22.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C1_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122209873-1867304 04A06_rep_D_Dropropizine_(R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122209873-1867304 04A06_rep_D_Dropropizine_(R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102017465-1869739 07B11_rep_D_Ethamivana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102017465-1869739 07B11_rep_D_Ethamivana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc1_T4_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150701146-1864920 02D08_rep_C_Chlorpheniramine maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150701146-1864920 02D08_rep_C_Chlorpheniramine maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120944989-1879259 14C06_rep_D_Milrinoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120944989-1879259 14C06_rep_D_Milrinoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009417_IBD200_E5_B2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150254981-1924327 1_C1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150254981-1924327 1_C1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153513462-1577428 Batch4_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145619578-1863938 02E10_rep_A_Pirenzepine dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145619578-1863938 02E10_rep_A_Pirenzepine dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B18_id_MSn_positive.mzML at line 21
index 429 is out of bounds for axis 0 with size 429
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151707798-1925051 4_H2_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151707798-1925051 4_H2_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_208.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152359166-1576878 Batch1_NCIH1993_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD2_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/FIL1_30EV_RA1_01_22629.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112546468-1874135 11A08_rep_A_Chloropyramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112546468-1874135 11A08_rep_A_Chloropyramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125654210-1877115 13B03_rep_A_THIP_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125654210-1877115 13B03_rep_A_THIP_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_C3_id_MSn_negative_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/maeB_P3H10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (maeB_P3H10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201547720-1881974 16H11_rep_C_Cefprozilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201547720-1881974 16H11_rep_C_Cefprozilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A7Bs5mm_black_P1-A-7_01_23058.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152158601-1868027 05A10_rep_C_Tacrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152158601-1868027 05A10_rep_C_Tacrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152816022-1577090 Batch3_A498_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101334604-1869415 07E11_rep_B_Troloxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101334604-1869415 07E11_rep_B_Troloxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K20_id_MSn_positive.mzML at line 21
index 569 is out of bounds for axis 0 with size 569
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dacD_P3C10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (dacD_P3C10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081778.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111707178-1921582 1_G2_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111707178-1921582 1_G2_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_133_3C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145744876-1864007 02H10_rep_A_Dihydrostreptomycin sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145744876-1864007 02H10_rep_A_Dihydrostreptomycin sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBsubR124h2a.mzML at line 689
Opening and ending tag mismatch: binary line 114694 and spectrum, line 114729, column 20 (pBsubR124h2a.mzML, line 114729)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114147390-1922831 4_B5_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114147390-1922831 4_B5_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_SERUM_V6_CAT.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2C09P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082735/ccms_peak/ST000664/EX00347-lipidomics/Raw data/POS/BATCH1/20150318_Test.mzXML at line 689
Extra content at the end of the document, line 73654, column 1 (20150318_Test.mzXML, line 73654)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2A08Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yeiR_P3D5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (yeiR_P3D5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009390_IBD200_E3_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine63.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine63.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Kosakonia_Oryzendophytica_EB1K019.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124042407-1876398 08G03_rep_D_Amisulpridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124042407-1876398 08G03_rep_D_Amisulpridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K11_id_MSn_negative.mzML at line 21
index 335 is out of bounds for axis 0 with size 335
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/artM_P3A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (artM_P3A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_042ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/47/d62553250ac1422796cac9fd0ea041/input_file/QC_20170209_042ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000093276/raw/20191003_KBL_WW_504264_GEBAVI_Super_QEHF_EPC18_USDAY54320/rawdata/20191003_KBLWW_504264_GEBAVI_Super_QEHF_EPC18-USDAY55278_POS_MSMS-V2_50_14SB-50ml-26-ExBlank-EtAce_2_022.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000093276/raw/20191003_KBL_WW_504264_GEBAVI_Super_QEHF_EPC18_USDAY54320/rawdata/20191003_KBLWW_504264_GEBAVI_Super_QEHF_EPC18-USDAY55278_POS_MSMS-V2_50_14SB-50ml-26-ExBlank-EtAce_2_022.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113410064-1922431 2_C3_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113410064-1922431 2_C3_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpD_P4D9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (atpD_P4D9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_55.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1080.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_123b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rdgB_#1_P4G7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (rdgB_#1_P4G7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202011859-1878176 09C05_rep_D_Loratadinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202011859-1878176 09C05_rep_D_Loratadinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GD6_01_11968.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case75_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case75_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170209_037ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/55/9f485776829531febcd6702e0b5966/input_file/MMW3_20170209_037ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122855814-1875834 08G06_rep_A_Cytarabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122855814-1875834 08G06_rep_A_Cytarabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgpA_P3H7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (pgpA_P3H7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD4_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007486_031618-Unst1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM2Q004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202008015-1878173 09E10_rep_D_Butylscopolammonium_(n-)_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202008015-1878173 09E10_rep_D_Butylscopolammonium_(n-)_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092153/peak/Sample0012.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_04_107_prot_23_IMS_9Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150416818-1924396 1_C3_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150416818-1924396 1_C3_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/215-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_4_P_rep_3_B-B4_1_5833.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122648209-1867529 05F01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122648209-1867529 05F01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170207_040EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/be/d552e99e4e2d5fe48598a878307eeb/input_file/SH7_20170207_040EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/274.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_D4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GG4_01_11721.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200640517-1881570 16A05_rep_A_Nevirapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200640517-1881570 16A05_rep_A_Nevirapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153746444-1577555 Batch7_MIAPACA2_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122933988-1875864 08C09_rep_A_Galanthamine_hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122933988-1875864 08C09_rep_A_Galanthamine_hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153048674-1577214 Batch3_PANC0403_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125200396-1862839 03A07_rep_C_Mafenide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125200396-1862839 03A07_rep_C_Mafenide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample044_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gpmM_P3A8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (gpmM_P3A8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case77_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case77_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E11_id_negative.mzML at line 21
index 254 is out of bounds for axis 0 with size 254
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1357.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1357.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093138523-1879163 14C07_rep_C_Methantheline_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093138523-1879163 14C07_rep_C_Methantheline_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152006939-1576694 Batch1_HCC1143_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152748627-1577067 Batch1_HCC15_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124343315-1862327 03D08_rep_A_Metaraminol_bitartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124343315-1862327 03D08_rep_A_Metaraminol_bitartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201145303-1881795 16C11_rep_B_Azatadine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201145303-1881795 16C11_rep_B_Azatadine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/424.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_241.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121857509-1879675 15F06_rep_B_Losartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121857509-1879675 15F06_rep_B_Losartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8B01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153131005-1868464 06H06_rep_B_Brompheniramine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153131005-1868464 06H06_rep_B_Brompheniramine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_redo_MSMS_2022_neg-0008.mzML at line 689
Premature end of data in tag binary line 13539, line 13539, column 1123863 (pooled_redo_MSMS_2022_neg-0008.mzML, line 13539)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD1_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_G6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122651882-1867532 05A07_rep_A_Methyldopa_(L,-)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122651882-1867532 05A07_rep_A_Methyldopa_(L,-)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130535488-1877516 13E05_rep_C_Meptazinol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130535488-1877516 13E05_rep_C_Meptazinol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092842736-1879028 14H08_rep_C_Azaperonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092842736-1879028 14H08_rep_C_Azaperonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiQ_P5F10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (thiQ_P5F10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151252518-1924839 3_E11_SNF3_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151252518-1924839 3_E11_SNF3_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113239813-1874455 11B08_rep_B_Deflazacortb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113239813-1874455 11B08_rep_B_Deflazacortb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P10_id_MSn_positive.mzML at line 21
index 564 is out of bounds for axis 0 with size 564
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150424720-1864799 02A02_rep_C_Metronidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150424720-1864799 02A02_rep_C_Metronidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD6_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200806512-1881633 16C06_rep_A_Nateglinidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200806512-1881633 16C06_rep_A_Nateglinidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101304708-1869391 07B11_rep_B_Ethamivana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101304708-1869391 07B11_rep_B_Ethamivana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153551288-1577459 Batch4_PANC0813_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIAE02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190127_ES_H3K_batch15_repA_219.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD4_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122426641-1879925 15B11_rep_C_Diclazurilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122426641-1879925 15B11_rep_C_Diclazurilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fbaB_P3F11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (fbaB_P3F11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoC_P3E10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (nuoC_P3E10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR13h1a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 77570, column 2907 (pMIBSDR13h1a.mzML, line 77570)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrfD_P3C5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (nrfD_P3C5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_114.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L71cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L71cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201218_LKM_no_ACN_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101959024-1869724 07H08_rep_D_Dirithromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101959024-1869724 07H08_rep_D_Dirithromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153305474-1577324 Batch4_MDAMB435S_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B02P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124009476-1876372 08D01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124009476-1876372 08D01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082744/ccms_peak/ST000763/EX00543/Raw data/Untargeted/NEG/20160506_NO.mzXML at line 689
Extra content at the end of the document, line 72312, column 1 (20160506_NO.mzXML, line 72312)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125751434-1863125 04E08_rep_A_Oxybutynin_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125751434-1863125 04E08_rep_A_Oxybutynin_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152346639-1576868 Batch1_NCIH1437_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124332055-1862318 03F09_rep_A_Fenbufenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124332055-1862318 03F09_rep_A_Fenbufenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_A3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/677.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113645997-1922565 2_B3_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113645997-1922565 2_B3_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223829900-1870313 01H11_rep_C_Trimethobenzamide hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223829900-1870313 01H11_rep_C_Trimethobenzamide hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152144359-1576771 Batch2_BT20_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pykF_P4G9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (pykF_P4G9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153735529-1577546 Batch6_NCIH146_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112210967-1921843 3_H3_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112210967-1921843 3_H3_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O17_id_MSn_positive.mzML at line 21
index 552 is out of bounds for axis 0 with size 552
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ5_5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100216240-1868874 06A11_rep_D_Amphotericin_Bb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100216240-1868874 06A11_rep_D_Amphotericin_Bb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD4_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR331_5h1a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101217544-1869353 07H11_rep_B_Prenylamine_lactatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101217544-1869353 07H11_rep_B_Prenylamine_lactatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-cc2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150536307-1924463 1_A2_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150536307-1924463 1_A2_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153502528-1577419 Batch4_NCIH1048_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-cc2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125007293-1876807 12E01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125007293-1876807 12E01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_359.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I20_id_MSn_positive.mzML at line 21
index 698 is out of bounds for axis 0 with size 698
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092007068-1878627 13G04_rep_D_Isometheptene_mucateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092007068-1878627 13G04_rep_D_Isometheptene_mucateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152906199-1868355 06G08_rep_A_Rifapentineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152906199-1868355 06G08_rep_A_Rifapentineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_G9_id_negative.mzML at line 21
index 278 is out of bounds for axis 0 with size 278
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152825454-1577098 Batch3_A549_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153659454-1868725 06F05_rep_C_Linezolidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153659454-1868725 06F05_rep_C_Linezolidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_186.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092519914-1878871 14C03_rep_B_Ioxaglic_acid_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092519914-1878871 14C03_rep_B_Ioxaglic_acid_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122442061-1867427 04F10_rep_D_Mifepristoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122442061-1867427 04F10_rep_D_Mifepristoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_55.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/BeautyProducts_Vol3/BP2_01_12351.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_12_40x_2022_1006_Michael_pos-0.0032.mzML at line 689
Premature end of data in tag binary line 3307, line 3307, column 2053937 (1_12_40x_2022_1006_Michael_pos-0.0032.mzML, line 3307)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28022021_Batch02_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ7_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/puuE_P3B2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (puuE_P3B2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_A8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092809751-1879002 14A10_rep_B_Oxyphenbutazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092809751-1879002 14A10_rep_B_Oxyphenbutazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201028755-1881738 16E05_rep_B_Benzoxiquineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201028755-1881738 16E05_rep_B_Benzoxiquineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_228.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202031117-1878191 09G06_rep_D_Methyl_benzethonium_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202031117-1878191 09G06_rep_D_Methyl_benzethonium_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/275.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201541143-1881969 16G06_rep_C_Ampiroxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201541143-1881969 16G06_rep_C_Ampiroxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F14_id.mzML at line 21
index 533 is out of bounds for axis 0 with size 533
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_3_B_rep_3_B-A8_1_5640.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ5_6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ompC_P3F12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (ompC_P3F12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_C3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_101.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_101.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112720444-1922114 4_G1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112720444-1922114 4_G1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150920631-1924656 2_H4_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150920631-1924656 2_H4_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223803094-2227638 PAT35.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151305226-1576345 Batch6_NCIH1155_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123010373-1875892 08H10_rep_A_Etoricoxiba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123010373-1875892 08H10_rep_A_Etoricoxiba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5C07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_G9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_CABIN_sample07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30174 - GI-19-002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/16FEB2021 Column3_test_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121418419-1879464 15E10_rep_A_Tripelennamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121418419-1879464 15E10_rep_A_Tripelennamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_103.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_C7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094364/raw/20230201_MV19_12C_DOM_extract_b_tr1_pos_zh.mzXML at line 689
Premature end of data in tag msRun line 5, line 82717, column 1 (20230201_MV19_12C_DOM_extract_b_tr1_pos_zh.mzXML, line 82717)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroH_P3F1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (aroH_P3F1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_18072701_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J20_id_MSn_positive_20240503091330.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-cc4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_A7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088606/peak/210116_AR_01_DMSO_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114754461-1875147 12E07_rep_B_Idazoxan_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114754461-1875147 12E07_rep_B_Idazoxan_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I20_id_negative.mzML at line 21
index 264 is out of bounds for axis 0 with size 264
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD1_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1085.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150507333-1924438 1_G5_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150507333-1924438 1_G5_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/serA_#3_P4G3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (serA_#3_P4G3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_4_P_rep_1_B-B8_1_5650.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112228193-1921858 3_A8_GPR1_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112228193-1921858 3_A8_GPR1_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124938388-1876785 12A10_rep_C_Diacereinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124938388-1876785 12A10_rep_C_Diacereinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GE2_01_12131.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201616590-1877997 09C08_rep_C_Acefyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201616590-1877997 09C08_rep_C_Acefyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_RBC_24h_NEG.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer4_RBC_24h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/66-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097681/peak/amino acids/030521-b1-QC3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121358968-1879449 15C11_rep_A_Fluconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121358968-1879449 15C11_rep_A_Fluconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/794.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151936117-1867912 05D05_rep_C_Clopamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151936117-1867912 05D05_rep_C_Clopamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/MS2/SS_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/MS2/SS_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-021_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150928953-1865035 02G06_rep_D_Chlortetracycline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150928953-1865035 02G06_rep_D_Chlortetracycline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIAG04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_E5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_mock_d1_291_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 25963, column 1 (SysVirol_IFT001_mock_d1_291_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 25963)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/906.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/905.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080284.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223807782-2227642 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_74.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/L1cells_2_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_50_NOR_20.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_50_NOR_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_SERUM_V1_SSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210108_AD_37.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00077317.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_A6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K19_id_MSn_negative.mzML at line 21
index 330 is out of bounds for axis 0 with size 330
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB4G04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H11_id_negative.mzML at line 21
index 252 is out of bounds for axis 0 with size 252
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L6_id_MSn_negative.mzML at line 21
index 325 is out of bounds for axis 0 with size 325
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_124.mzXML at line 689
Premature end of data in tag peaks line 23805, line 23809, column 15939 (20121114_124.mzXML, line 23809)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_cc3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092251112-1878755 14B06_rep_A_Piperidolate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092251112-1878755 14B06_rep_A_Piperidolate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093131187-1879157 14B01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093131187-1879157 14B01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092636805-1878931 14G02_rep_B_Perindoprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092636805-1878931 14G02_rep_B_Perindoprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113531068-1874555 11F06_rep_C_Beclomethasone_dipropionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113531068-1874555 11F06_rep_C_Beclomethasone_dipropionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111616651-1921539 1_G10_GAP1_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111616651-1921539 1_G10_GAP1_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009684_IBD200_E21_A11.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201116819-1877779 09B08_rep_B_Benzamil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201116819-1877779 09B08_rep_B_Benzamil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093045372-1879121 14D07_rep_C_Ciprofibrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093045372-1879121 14D07_rep_C_Ciprofibrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113604881-1874582 11F10_rep_C_Fluvastatin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113604881-1874582 11F10_rep_C_Fluvastatin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d3_282_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag peaks line 36182, line 36186, column 7659 (SysVirol_IFT001_1918_d3_282_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 36186)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR331_5h3a.mzML at line 689
Specification mandates value for attribute acce5EkRLjfJETzTSVEeU0mRLUVJ0TcTidEu5AnREZRKETElihEaZ4oRAMPKUT8GCtE20osRCkCLUQmSi5Eio0uRPnPLkRKFS9ENNMvRHbXL0QoFzBEwlMwRBxZMUQ3FzJEG4gyRPVVM0TtzjNEjNozRMQMNETgTzREbSQ1RO1ZNUQrkTVEbZo1RKDSNURbIzZE6vA2RDQbN0QU2DpEsXo8RCWlPkS7jz9EahhBRLxUQUTBzkFEo9RBRHgWQkQw1UJECtVDRBvkQ0R, line 19887, column 305 (pBpumR331_5h3a.mzML, line 19887)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ddpD_P3D8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (ddpD_P3D8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080619.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-qc_ehigh.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHK03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw_Baseline_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_147.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpTen2_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxD_P4H12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (lpxD_P4H12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152533328-1868190 05C05_rep_D_Clorgyline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152533328-1868190 05C05_rep_D_Clorgyline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_76.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dsbG_P3F9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (dsbG_P3F9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007552_031618-1CRP3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1131.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1131.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125212797-1862849 03G06_rep_C_Nifenazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125212797-1862849 03G06_rep_C_Nifenazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3A07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170209_028ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/dc/36ed95ac1c92c9456b06fe08d579bd/input_file/MMW6_20170209_028ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dosP_P3G5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (dosP_P3G5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132910940-1733892 blankb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_17121406_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_L13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125448167-1862975 03F04_rep_D_Fenspiride_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125448167-1862975 03F04_rep_D_Fenspiride_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124308081-1876515 08H03_rep_D_Dipivefrin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124308081-1876515 08H03_rep_D_Dipivefrin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114141849-1922826 4_C1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114141849-1922826 4_C1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-22.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-22.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/2cpr5p-pran_trpC_P3D12_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024898 (2cpr5p-pran_trpC_P3D12_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092852139-1879036 14F05_rep_C_Sulfadoxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092852139-1879036 14F05_rep_C_Sulfadoxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_G10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_G10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092232191-1878740 14C11_rep_A_Vorinostata.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092232191-1878740 14C11_rep_A_Vorinostata.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hldE_P4D5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (hldE_P4D5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113217311-1874437 11F02_rep_B_Paroxetine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113217311-1874437 11F02_rep_B_Paroxetine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150430882-1924408 1_C8_RGT2_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150430882-1924408 1_C8_RGT2_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc1 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N6_id_MSn_negative.mzML at line 21
index 345 is out of bounds for axis 0 with size 345
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124229471-1862268 03H01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124229471-1862268 03H01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GD10_01_16953.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G04P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case160_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case160_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_E4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152232442-1576809 Batch2_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123335761-1876057 08H07_rep_B_Penciclovirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123335761-1876057 08H07_rep_B_Penciclovirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113848509-1922672 3_B11_STE2_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113848509-1922672 3_B11_STE2_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152344442-1868107 05F01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152344442-1868107 05F01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153324034-1577339 Batch5_NCIH1650_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_07_358_prot_44_IMS_12Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150216130-1864701 02H10_rep_B_Dihydrostreptomycin sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150216130-1864701 02H10_rep_B_Dihydrostreptomycin sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/treF_P4A4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (treF_P4A4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/005_Urea_Day11_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sucA_P3B1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (sucA_P3B1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201026086-1881736 16D01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201026086-1881736 16D01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_126a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N15.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000078960/ccms_peak/Soce38-Hmix_SPL-6+5+4_RA1_01_20445.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078891/ccms_peak/massive_cyanos/EH_2014_05_19_KO+N_colony.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/187-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122829096-1875813 08F01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122829096-1875813 08F01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_131_2B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E21_id.mzML at line 21
index 488 is out of bounds for axis 0 with size 488
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123555513-1876170 08H07_rep_C_Penciclovira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123555513-1876170 08H07_rep_C_Penciclovira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/818.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cyoE_#2_P4A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (cyoE_#2_P4A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/livK_P4C6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (livK_P4C6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GD1_01_16818.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_D8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O9_id_MSn_negative.mzML at line 21
index 380 is out of bounds for axis 0 with size 380
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083193.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124412231-1876568 09D11_rep_A_Warfarina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124412231-1876568 09D11_rep_A_Warfarina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control62_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control62_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D2_preFOS_2_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153730721-1868750 06B09_rep_C_Biotina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153730721-1868750 06B09_rep_C_Biotina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153719168-1868741 06E06_rep_C_Cyclobenzaprine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153719168-1868741 06E06_rep_C_Cyclobenzaprine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B18_id_MSn_positive.mzML at line 21
index 457 is out of bounds for axis 0 with size 457
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093116209-1879145 14G03_rep_C_Fexofenadine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093116209-1879145 14G03_rep_C_Fexofenadine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172658857-1889914 Na.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201955299-1882165 16G04_rep_D_Tolterodine_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201955299-1882165 16G04_rep_D_Tolterodine_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121056687-1879313 14G03_rep_D_Fexofenadine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121056687-1879313 14G03_rep_D_Fexofenadine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B10_id_MSn_positive.mzML at line 21
index 566 is out of bounds for axis 0 with size 566
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092537624-1878885 14E06_rep_B_Topiramateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092537624-1878885 14E06_rep_B_Topiramateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078960/ccms_peak/blank-Pmix_SPL-GT47-6+5_RA1_01_19801.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114331348-1922924 4_E8_STE2_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114331348-1922924 4_E8_STE2_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180822_ES_H3K_batch10_repB_150.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_122.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_Plasma2_NEG.mzXML at line 689
attributes construct error, line 38, column 75 (Person4_Plasma2_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K10_id_MSn_positive.mzML at line 21
index 520 is out of bounds for axis 0 with size 520
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_F3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_75.mzXML at line 689
Premature end of data in tag peaks line 20388, line 20392, column 11843 (20121114_75.mzXML, line 20392)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1H002B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000088068/ccms_peak/AH009_Phaeo_Cont_R2.mzML at line 689
Specification mandates value for attribute 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, line 134590, column 846 (AH009_Phaeo_Cont_R2.mzML, line 134590)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009770_IBD200_E23_B10.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150550328-1924475 1_E10_RGT2_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150550328-1924475 1_E10_RGT2_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_26_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_26_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S67.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S67.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113548624-1922516 2_H4_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113548624-1922516 2_H4_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/367.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150957351-1865057 02G07_rep_D_Tamoxifen citrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150957351-1865057 02G07_rep_D_Tamoxifen citrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD1_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case105_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case105_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_3_RESV_20uM_NEG.mzXML at line 689
attributes construct error, line 38, column 82 (C2C12_3_RESV_20uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ppc_P5G10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ppc_P5G10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112446820-1874088 10B05_rep_D_Flumethasonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112446820-1874088 10B05_rep_D_Flumethasonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample093.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_372.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nadR_P4E8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (nadR_P4E8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/92.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100324024-1868927 06D10_rep_D_Carbimazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100324024-1868927 06D10_rep_D_Carbimazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD1_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/016_100uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alr_#1_P4G9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (alr_#1_P4G9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125228756-1876912 12G07_rep_C_Altretamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125228756-1876912 12G07_rep_C_Altretamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2A01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130002760-1877261 13C03_rep_A_Nandrolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130002760-1877261 13C03_rep_A_Nandrolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190348263-1889808 NNa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081036.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_70.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person12_blood_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 100 (Person12_blood_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113257013-1874469 11G11_rep_B_Luteolinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113257013-1874469 11G11_rep_B_Luteolinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_H6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130011415-1877267 13D11_rep_A_Lymecyclinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130011415-1877267 13D11_rep_A_Lymecyclinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nanC_P4B12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (nanC_P4B12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130903417-1877682 13B11_rep_C_Piribedil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130903417-1877682 13B11_rep_C_Piribedil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223817000-1870303 01E08_rep_C_Ticlopidine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223817000-1870303 01E08_rep_C_Ticlopidine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/2.4_VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_79.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210325_AD_70.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201520204-1877955 09F08_rep_C_3-alpha-Hydroxy-5-beta-androstan-17-oneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201520204-1877955 09F08_rep_C_3-alpha-Hydroxy-5-beta-androstan-17-oneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GE1_01_16958.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K6_id_negative.mzML at line 21
index 250 is out of bounds for axis 0 with size 250
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2F01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092944952-1879078 14G09_rep_C_Mephenytoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092944952-1879078 14G09_rep_C_Mephenytoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125846638-1863171 04A02_rep_A_Mexiletine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125846638-1863171 04A02_rep_A_Mexiletine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_G9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GB12_01_11476.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_42_NOR_15.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_42_NOR_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150522206-1864844 02B08_rep_C_Disulfirama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150522206-1864844 02B08_rep_C_Disulfirama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092021302-1878638 13B05_rep_D_Pronethalol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092021302-1878638 13B05_rep_D_Pronethalol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113830839-1922656 3_D11_STE2_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113830839-1922656 3_D11_STE2_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202121804-1882232 16D07_rep_D_Fenoldopamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202121804-1882232 16D07_rep_D_Fenoldopamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153355082-1577364 Batch3_KU1919_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mltC_P3A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (mltC_P3A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124955764-1876798 12G02_rep_C_Pentetic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124955764-1876798 12G02_rep_C_Pentetic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw3_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086486/ccms_peak/peak/sample/MSplate14_yidI_b3677_B3_plateY_rep2_HEAT_GEIV_0-698_1181.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (MSplate14_yidI_b3677_B3_plateY_rep2_HEAT_GEIV_0-698_1181.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-043_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_G4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_112.mzXML at line 689
Premature end of data in tag peaks line 22513, line 22517, column 7748 (20121114_112.mzXML, line 22517)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200954379-1877719 09H05_rep_B_Isosorbide_dinitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200954379-1877719 09H05_rep_B_Isosorbide_dinitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091726641-1878500 13G07_rep_D_Arbutina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091726641-1878500 13G07_rep_D_Arbutina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/f6p-g6p_pgi_P6E4_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024916 (f6p-g6p_pgi_P6E4_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151601523-1924995 4_G4_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151601523-1924995 4_G4_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_G4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ddpD_P3D8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (ddpD_P3D8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_MICU_436_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223814676-2227648 PAT40.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190109_ES_H3K_batch12_repB_182.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_364.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/005_1020_2_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151405657-1924902 4_A3_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151405657-1924902 4_A3_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_99.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180829_ES_H3K_batch11_repB_165.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124214056-1862256 03G05_rep_A_Oxymetazoline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124214056-1862256 03G05_rep_A_Oxymetazoline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person07_blood_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 101 (Person07_blood_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/606.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_A4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S05_dilute_190131212230.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7D05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F14_id_MSn_positive.mzML at line 21
index 748 is out of bounds for axis 0 with size 748
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A22_id_MSn_negative.mzML at line 21
index 298 is out of bounds for axis 0 with size 298
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202119186-1882230 16D02_rep_D_Aminacrineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202119186-1882230 16D02_rep_D_Aminacrineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD4_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/254.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/219.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153718556-1577532 Batch4_NCIH810_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_A2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153421873-1577386 Batch5_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P10_id_negative.mzML at line 21
index 278 is out of bounds for axis 0 with size 278
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B04Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211005_LKM_beads_mb_HPL_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085900/peak/pos_mzxml/positive_5_Oct_22_saliva_early_chronic_infected_20200715012415.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1561.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1561.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112204836-1873573 10H05_rep_D_Eucatropine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112204836-1873573 10H05_rep_D_Eucatropine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A23_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ycaO_#3_P4H1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (ycaO_#3_P4H1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080281.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_A7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094430/metadata/metadata-example-2files.csv at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aldB_P4A12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (aldB_P4A12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ4_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200655053-1881581 16E01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200655053-1881581 16E01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124537239-1876634 09F06_rep_A_Venlafaxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124537239-1876634 09F06_rep_A_Venlafaxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/CPV_P_rep_2_B-E5_1_5677.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094430/ccms_parameters/params.xml at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHK03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152312915-1576841 Batch2_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122028822-1867223 04H06_rep_C_Minocycline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122028822-1867223 04H06_rep_C_Minocycline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150415193428.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_C7_01_12220.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_B1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/72-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_D1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_E6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-faux (5).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person06_blood_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 101 (Person06_blood_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_LCTS_2.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151652365-1576534 Batch7_SKMES1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007528_031618-1Thr2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_G5_id_positive.mzML at line 21
index 381 is out of bounds for axis 0 with size 381
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130238745-1877378 13H08_rep_B_Zalcitabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130238745-1877378 13H08_rep_B_Zalcitabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxP_P3C12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (lpxP_P3C12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113925716-1922705 3_D9_STE2_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113925716-1922705 3_D9_STE2_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111952431-1921724 2_C5_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111952431-1921724 2_C5_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170125_021EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/46/fd991daa3761fedf8eea379d9c0a56/input_file/SH9_20170125_021EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R331_5h1a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 251330, column 312 (pBlichMO17R331_5h1a.mzML, line 251330)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2C01Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122219392-1879828 15B01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122219392-1879828 15B01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argF_P3D8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (argF_P3D8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_23_AC+_51.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100325276-1868928 06D10_rep_D_Carbimazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100325276-1868928 06D10_rep_D_Carbimazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152305255-1576835 Batch1_HCC1806_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151124595-1924763 3_B11_SNF3_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151124595-1924763 3_B11_SNF3_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A12_id_negative.mzML at line 21
index 270 is out of bounds for axis 0 with size 270
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_C10_01_12203.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121740191-1867090 04F03_rep_C_Trazodone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121740191-1867090 04F03_rep_C_Trazodone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150537523-1864856 02G11_rep_C_Dihydroergotamine tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150537523-1864856 02G11_rep_C_Dihydroergotamine tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc1 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_05_liver_RESV_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_05_liver_RESV_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-6-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaA_P6E9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (paaA_P6E9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C8_id_MSn_negative.mzML at line 21
index 298 is out of bounds for axis 0 with size 298
Error processing file: /data/datasets/server/MassIVE/MSV000082795/ccms_peak/raw/MTBLS428/mtab_VentDOM_tsq_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082795/ccms_peak/raw/MTBLS428/mtab_VentDOM_tsq_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-27d.mzXML at line 689
Premature end of data in tag peaks line 6781, line 6785, column 7671 (YnYn-27d.mzXML, line 6785)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153151790-1868480 06E04_rep_B_Gabazine_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153151790-1868480 06E04_rep_B_Gabazine_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151923179-1576659 Batch7_NCIH209_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150646405-1924523 2_C1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150646405-1924523 2_C1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Blank_pesticide.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075353.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112617019-1922058 4_E11_GPR1_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112617019-1922058 4_E11_GPR1_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150447174-1924421 1_C9_RGT2_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150447174-1924421 1_C9_RGT2_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/009_CRa_H9M5_M470_Blank_03_high_pos.mzXML at line 689
Premature end of data in tag peaks line 16398, line 16402, column 48621 (009_CRa_H9M5_M470_Blank_03_high_pos.mzXML, line 16402)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JVE1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_129b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201638060-1882012 16C02_rep_C_(R)-Duloxetine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201638060-1882012 16C02_rep_C_(R)-Duloxetine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fieF_#1_P3G6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (fieF_#1_P3G6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/accA_P3G7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (accA_P3G7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122748293-1875781 08E02_rep_A_Tranilastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122748293-1875781 08E02_rep_A_Tranilastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152611834-1576986 Batch2_OVCAR3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G20_id_MSn_negative.mzML at line 21
index 330 is out of bounds for axis 0 with size 330
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET76.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET76.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/033_CRa_H9M5_M470_Pool_05_low_pos.mzXML at line 689
Premature end of data in tag peaks line 15524, line 15528, column 24055 (033_CRa_H9M5_M470_Pool_05_low_pos.mzXML, line 15528)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GG4_01_17100.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151231954-1924821 3_A10_SNF3_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151231954-1924821 3_A10_SNF3_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pflD_P4C10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (pflD_P4C10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101417132-1869449 07B10_rep_C_Propafenone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101417132-1869449 07B10_rep_C_Propafenone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112639352-1922078 4_D7_GPR1_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112639352-1922078 4_D7_GPR1_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122916476-1880151 15D04_rep_D_Mitotaneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122916476-1880151 15D04_rep_D_Mitotaneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_1_B_rep_2_B-A3_1_5635.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224008314-1870389 01E07_rep_D_Naphazoline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224008314-1870389 01E07_rep_D_Naphazoline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123550324-1876166 08A10_rep_C_Entacaponea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123550324-1876166 08A10_rep_C_Entacaponea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F24_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124633624-1862578 03H09_rep_B_Lomefloxacin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124633624-1862578 03H09_rep_B_Lomefloxacin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124253251-1876503 08E09_rep_D_Oxibendazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124253251-1876503 08E09_rep_D_Oxibendazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201553370-1877980 09B09_rep_C_Suxibuzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201553370-1877980 09B09_rep_C_Suxibuzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150131194-1864186 02E05_rep_B_Tioconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150131194-1864186 02E05_rep_B_Tioconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_111.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gshA_#3_P5G3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (gshA_#3_P5G3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222739802-1869819 01A06_rep_A_Atracurium besylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222739802-1869819 01A06_rep_A_Atracurium besylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_4_B_rep_4_B-E1_1_5544.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_plasma_4h_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer4_plasma_4h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD1_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152122996-1576754 Batch1_HCC1937_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_A12_id_positive.mzML at line 21
index 340 is out of bounds for axis 0 with size 340
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_70.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151341149-1924881 4_C10_SNF3_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151341149-1924881 4_C10_SNF3_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_A5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153212592-1577281 Batch5_NCIH23_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114144002-1922828 4_F7_STE2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114144002-1922828 4_F7_STE2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E6_id.mzML at line 21
index 535 is out of bounds for axis 0 with size 535
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_133_2C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G12_id_MSn_negative.mzML at line 21
index 334 is out of bounds for axis 0 with size 334
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C1_repl4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_G1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G6_id_MSn_positive.mzML at line 21
index 578 is out of bounds for axis 0 with size 578
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d3_280_lipid__Neg_17Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 35128, column 1 (SysVirol_IFL001_1918_d3_280_lipid__Neg_17Sep13_13-07-01.mzXML, line 35128)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114125722-1874840 11C04_rep_D_Sulfamonomethoxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114125722-1874840 11C04_rep_D_Sulfamonomethoxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHJ02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_E2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112623601-1922064 4_D1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112623601-1922064 4_D1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M14_id_MSn_positive.mzML at line 21
index 552 is out of bounds for axis 0 with size 552
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111755251-1921624 1_B2_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111755251-1921624 1_B2_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_131_3B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151047250-1865096 02F02_rep_D_Glipizidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151047250-1865096 02F02_rep_D_Glipizidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092722718-1878966 14B07_rep_B_Trifluridinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092722718-1878966 14B07_rep_B_Trifluridinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202410144-1878364 10C01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202410144-1878364 10C01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122519730-1879966 15B07_rep_C_Caffeinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122519730-1879966 15B07_rep_C_Caffeinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P22_id.mzML at line 21
index 558 is out of bounds for axis 0 with size 558
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201550963-1877978 09C07_rep_C_Nisoldipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201550963-1877978 09C07_rep_C_Nisoldipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nadD_P3B9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (nadD_P3B9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_C4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_sample06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_144.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person18_plasma_elder_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person18_plasma_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151311198-1576350 Batch7_SNB75_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153408976-1868588 06E06_rep_B_Cyclobenzaprine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153408976-1868588 06E06_rep_B_Cyclobenzaprine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092538943-1878886 14E09_rep_B_(+,-)-Synephrinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092538943-1878886 14E09_rep_B_(+,-)-Synephrinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114321438-1874934 12E02_rep_A_Nizatidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114321438-1874934 12E02_rep_A_Nizatidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114402981-1874968 12E07_rep_A_Idazoxan_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114402981-1874968 12E07_rep_A_Idazoxan_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151522065-1576458 Batch6_NCIH1838_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125841644-1877198 13D03_rep_A_Pizotifen_malateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125841644-1877198 13D03_rep_A_Pizotifen_malateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D14_id_MSn_negative.mzML at line 21
index 327 is out of bounds for axis 0 with size 327
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B12_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170209_045ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a6/7ef3029e8206d7513cfa5842fb35a5/input_file/MMW6_20170209_045ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD1_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111908707-1921687 2_C7_GAP1_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111908707-1921687 2_C7_GAP1_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125817042-1877179 13A08_rep_A_Gestrinonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125817042-1877179 13A08_rep_A_Gestrinonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/15_D24062013T1846_1399CBU_0012_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101425935-1869456 07A08_rep_C_Daunorubicin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101425935-1869456 07A08_rep_C_Daunorubicin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O8_id_MSn_negative.mzML at line 21
index 361 is out of bounds for axis 0 with size 361
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_G12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153512220-1577427 Batch4_SKOV3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153442925-1577403 Batch4_SW780_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151937555-1576671 Batch1A_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E3_id_MSn_positive.mzML at line 21
index 725 is out of bounds for axis 0 with size 725
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S3cells_3_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202106571-1878219 09C06_rep_D_Tetraethylenepentamine_pentahydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202106571-1878219 09C06_rep_D_Tetraethylenepentamine_pentahydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_17121406_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/587.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223705768-1870248 01H02_rep_C_Todralazine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223705768-1870248 01H02_rep_C_Todralazine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201107167-1877772 09D09_rep_B_Tazobactama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201107167-1877772 09D09_rep_B_Tazobactama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_0124_190125014837.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201448559-1881933 16G01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201448559-1881933 16G01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080183/ccms_peak/AIR_4Weeks/42-F-03.mzXML at line 689
Opening and ending tag mismatch: peaks line 8269 and scan, line 8286, column 12 (42-F-03.mzXML, line 8286)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_E10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_E3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153753677-1577561 Batch6_MDAMB435S_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/COR2_30EV_RA1_01_22546.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210505_LKM_on_ctrl_4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224007207-1870388 01B03_rep_D_Benzonatateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224007207-1870388 01B03_rep_D_Benzonatateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180827_ES_H3K_batch11_repA_163.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130124960-1877321 13H04_rep_B_Nomegestrol_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130124960-1877321 13H04_rep_B_Nomegestrol_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_1_B-A2_1_5628.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample032.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124549890-1876643 09H06_rep_A_Sulfachloropyridazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124549890-1876643 09H06_rep_A_Sulfachloropyridazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F16_id_MSn_negative.mzML at line 21
index 330 is out of bounds for axis 0 with size 330
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092219491-1878730 14A01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092219491-1878730 14A01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101918644-1869691 07D02_rep_D_Fluoxetine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101918644-1869691 07D02_rep_D_Fluoxetine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B13Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113120543-1922283 1_F5_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113120543-1922283 1_F5_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3C06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-cc3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person08_plasma_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person08_plasma_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/19072021_Batch07_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_B9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202227904-1878283 10H07_rep_A_Lithocholic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202227904-1878283 10H07_rep_A_Lithocholic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH36.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_A10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD2_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_G9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152035018-1867960 05C07_rep_C_Maprotiline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152035018-1867960 05C07_rep_C_Maprotiline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007551_031618-1CRP3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GC4_01_11482.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L12_id_MSn_negative.mzML at line 21
index 344 is out of bounds for axis 0 with size 344
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153551123-1868669 06G01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153551123-1868669 06G01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2L024B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_70.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR17_5h2a.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223712366-1870253 01F07_rep_C_Sulpiridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223712366-1870253 01F07_rep_C_Sulpiridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2C05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_F2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/432.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw_Baseline_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_192.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125032644-1862769 03A09_rep_C_Nitrofurantoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125032644-1862769 03A09_rep_C_Nitrofurantoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case67_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case67_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EBM010B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092742177-1878981 14A06_rep_B_Sertaconazole_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092742177-1878981 14A06_rep_B_Sertaconazole_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cyoB_P4C4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (cyoB_P4C4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_127.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_127.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113534818-1922504 2_A2_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113534818-1922504 2_A2_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100739489-1869132 07E07_rep_A_Ethionamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100739489-1869132 07E07_rep_A_Ethionamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rutE_P3E1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (rutE_P3E1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124351520-1876551 09G08_rep_A_Diphenylpyraline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124351520-1876551 09G08_rep_A_Diphenylpyraline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122323954-1867364 04G01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122323954-1867364 04G01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ5_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113242590-1922354 1_F10_IZH2_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113242590-1922354 1_F10_IZH2_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151836564-1867865 05F09_rep_C_Bezafibrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151836564-1867865 05F09_rep_C_Bezafibrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD1_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_68.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152627343-1576999 Batch2_NCIH647_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092308101-1878768 14C03_rep_A_Ioxaglic_acid_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092308101-1878768 14C03_rep_A_Ioxaglic_acid_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_G5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_34.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_34.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150918280-1924654 2_C9_RGT2_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150918280-1924654 2_C9_RGT2_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165837165-2227543 Healthy5.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std a 003a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GE11_01_17079.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc4 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrdF_P3F5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (nrdF_P3F5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152115329-1576748 Batch1A_UMUC3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122753655-1867582 05H02_rep_A_Terbutaline_hemisulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122753655-1867582 05H02_rep_A_Terbutaline_hemisulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample193_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample214.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121659878-1867058 04C07_rep_B_Disopyramidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121659878-1867058 04C07_rep_B_Disopyramidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/speE_P4D1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (speE_P4D1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P13_id_MSn_negative.mzML at line 21
index 355 is out of bounds for axis 0 with size 355
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151622974-1576509 Batch7_SKMES1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hA1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hA1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075252.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample228.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD4_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_51_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_51_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202140704-1882247 16D06_rep_D_Cefpiramidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202140704-1882247 16D06_rep_D_Cefpiramidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GH10_01_11758.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151620669-1576507 Batch7_MIAPACA2_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124223773-1876479 08G07_rep_D_Racecadotrilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124223773-1876479 08G07_rep_D_Racecadotrilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_F8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_A3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130745506-1877619 13H08_rep_C_Zalcitabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130745506-1877619 13H08_rep_C_Zalcitabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112500191-1921991 3_E11_GPR1_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112500191-1921991 3_E11_GPR1_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_137.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_137.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_131_3A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151756906-1576587 Batch3_J82_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/71-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ldtE_P3E9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (ldtE_P3E9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095328/peak/MS_RAW_data/230811_BBT301_control_TPP_HighPH_8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J9_id_negative.mzML at line 21
index 263 is out of bounds for axis 0 with size 263
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114438498-1874997 12C11_rep_A_Nisoxetine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114438498-1874997 12C11_rep_A_Nisoxetine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170207_025EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/3a/78f2cd56925929b5eb76f4f00d8e61/input_file/SH8_20170207_025EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_E3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125625679-1877093 12D05_rep_D_Estronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125625679-1877093 12D05_rep_D_Estronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD1_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087358/raw/GNPS-Streptomyces/SB5.mzXML at line 689
Premature end of data in tag peaks line 323, line 327, column 187 (SB5.mzXML, line 327)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130239981-1877379 13C07_rep_B_Proscillaridin_Aa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130239981-1877379 13C07_rep_B_Proscillaridin_Aa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample193.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145548201-1863913 02D03_rep_A_Metolazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145548201-1863913 02D03_rep_A_Metolazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009461_IBD200_E7_B12.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_74.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_22_Dorsal_skin_EtOH_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_22_Dorsal_skin_EtOH_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D1_postFOS_2_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121157973-1879359 14B02_rep_D_Moricizine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121157973-1879359 14B02_rep_D_Moricizine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ4_3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L18_id_MSn_positive.mzML at line 21
index 589 is out of bounds for axis 0 with size 589
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_69.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009375_IBD200_E2_B6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151648082-1925035 4_F9_SNF3_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151648082-1925035 4_F9_SNF3_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114332533-1874943 12C03_rep_A_Abacavir_Sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114332533-1874943 12C03_rep_A_Abacavir_Sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/677.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemH_P4G10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (hemH_P4G10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114941593-1875234 12H11_rep_B_Aminocaproic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114941593-1875234 12H11_rep_B_Aminocaproic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_B7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Daid_LbUGT3_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007630_032118-0.01Thr1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165859634-2227564 PAT41.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202407691-1878362 10D09_rep_A_Ribostamycin_sulfate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202407691-1878362 10D09_rep_A_Ribostamycin_sulfate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/158-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083395/peak/mzML/Fecal1_SPE_40H2O-60MeOH.mzML at line 689
Specification mandates value for attribute id, line 358170, column 17 (Fecal1_SPE_40H2O-60MeOH.mzML, line 358170)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091700277-1878479 13H05_rep_D_Pancuronium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091700277-1878479 13H05_rep_D_Pancuronium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100527102-1869025 06A09_rep_D_Butoconazole_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100527102-1869025 06A09_rep_D_Butoconazole_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112308087-1873624 10F10_rep_D_Zomepirac_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112308087-1873624 10F10_rep_D_Zomepirac_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114354097-1922944 4_C2_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114354097-1922944 4_C2_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152340505-1576863 Batch1_HCC70_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153139863-1577255 Batch4_NCIH2009_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc053_neg.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc053_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_054ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b4/09ff750f0ad69e58b5657d7c5f6a88/input_file/QC_20170209_054ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5B05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222921084-1869896 01A08_rep_A_Amiloride hydrochloride dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222921084-1869896 01A08_rep_A_Amiloride hydrochloride dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_74.mzXML at line 689
Premature end of data in tag peaks line 20524, line 20528, column 11843 (20121114_74.mzXML, line 20528)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case158_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case158_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M16_id_MSn_positive.mzML at line 21
index 569 is out of bounds for axis 0 with size 569
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/198-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2A03Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G11_id_MSn_negative.mzML at line 21
index 338 is out of bounds for axis 0 with size 338
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J16_id_negative.mzML at line 21
index 274 is out of bounds for axis 0 with size 274
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220222_LKM_HEK_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078603/ccms_peak/DTU_P1/G1G10_RG10_01_7129.mzXML at line 689
Premature end of data in tag peaks line 4774, line 4774, column 131315 (G1G10_RG10_01_7129.mzXML, line 4774)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082913/raw/15NEGMSMS20_25_30eV.mzML at line 689
Premature end of data in tag binary line 12660, line 12660, column 1088597 (15NEGMSMS20_25_30eV.mzML, line 12660)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ7_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202058277-1882214 16A11_rep_D_Troxipideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202058277-1882214 16A11_rep_D_Troxipideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/885.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153004307-1577182 Batch3_MGHU3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_PB_male_2022_1017_Michael_neg-0.0040.mzML at line 689
Premature end of data in tag binary line 27597, line 27597, column 2223261 (2_PB_male_2022_1017_Michael_neg-0.0040.mzML, line 27597)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112505706-1874103 10C06_rep_D_Spiramycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112505706-1874103 10C06_rep_D_Spiramycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152633416-1577004 Batch2_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1145.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152401740-1576880 Batch2_NCIH2085_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122049503-1879760 15A03_rep_B_Anastrozolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122049503-1879760 15A03_rep_B_Anastrozolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1132.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1132.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/396.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190108_ES_H3K_batch12_repA_176.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_11P_A11_id_negative.mzML at line 21
index 242 is out of bounds for axis 0 with size 242
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150955997-1865056 02G07_rep_D_Tamoxifen citratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150955997-1865056 02G07_rep_D_Tamoxifen citratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094756/peak/02_TO_mLiver_Pel_C18_pos.mzML at line 689
Premature end of data in tag binary line 3718244, line 3718244, column 64 (02_TO_mLiver_Pel_C18_pos.mzML, line 3718244)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample018.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MSB05.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125550923-1863026 03H03_rep_D_Scopolamin-N-oxide_hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125550923-1863026 03H03_rep_D_Scopolamin-N-oxide_hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR331_5h2a.mzML at line 689
Opening and ending tag mismatch: binary line 185866 and binaryDataArray, line 185867, column 31 (pMIBSDR331_5h2a.mzML, line 185867)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gntU_P4E3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (gntU_P4E3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123159527-1875980 08H01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123159527-1875980 08H01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111519044-1921104 1_A5_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111519044-1921104 1_A5_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E11_id_negative.mzML at line 21
index 243 is out of bounds for axis 0 with size 243
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113652893-1922571 2_G7_IZH2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113652893-1922571 2_G7_IZH2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_male_2022_1017_Michael_neg-0010.mzML at line 689
Premature end of data in tag binary line 3703, line 3703, column 1480431 (pooled_male_2022_1017_Michael_neg-0010.mzML, line 3703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122836398-1875819 08D07_rep_A_Fomepizoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122836398-1875819 08D07_rep_A_Fomepizoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170207_040EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/5c/cea19971abfaf8bcb8ad6fe2a96327/input_file/SH7_20170207_040EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8F05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121257080-1879403 14F02_rep_D_Spaglumic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121257080-1879403 14F02_rep_D_Spaglumic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082765/ccms_peak/raw/MTBLS290/2014-02-13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082765/ccms_peak/raw/MTBLS290/2014-02-13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_CABIN_sample10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/321.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111443766-1871497 10G03_rep_B_Podophyllotoxina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111443766-1871497 10G03_rep_B_Podophyllotoxina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_aqueous_longstudy_230215_170.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pflD_P4C10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (pflD_P4C10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074714.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/19072021_Batch07_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092854663-1879038 14H10_rep_C_Clocortolone_pivalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092854663-1879038 14H10_rep_C_Clocortolone_pivalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/plsB_P3B12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (plsB_P3B12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/119.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_B4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152127999-1576758 Batch1A_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/053_54.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100632113-1869077 07A05_rep_A_Benperidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100632113-1869077 07A05_rep_A_Benperidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30078 - GI-14-796.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009513_IBD200_E10_A9.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_34.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_34.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202053091-1882210 16H05_rep_D_Ceftibutenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202053091-1882210 16H05_rep_D_Ceftibutenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tyrP_P3E11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (tyrP_P3E11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224220647-1870491 01D03_rep_D_Epirizolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224220647-1870491 01D03_rep_D_Epirizolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093117554-1879146 14G01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093117554-1879146 14G01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_12.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_12.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mepH_#1_P4C2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (mepH_#1_P4C2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_D8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152353954-1868114 05F03_rep_D_Debrisoquin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152353954-1868114 05F03_rep_D_Debrisoquin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/259.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1151.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J22_id_MSn_negative.mzML at line 21
index 312 is out of bounds for axis 0 with size 312
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114638399-1875088 12E01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114638399-1875088 12E01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_76.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample219_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_H1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-065.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-065.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_H5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/430.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170127_037ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e4/bc347108c6b662331ca16cf5ddae89/input_file/MMW6_20170127_037ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152746630-1868293 06D02_rep_A_Pefloxacineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152746630-1868293 06D02_rep_A_Pefloxacineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153351332-1868574 06B08_rep_B_Lamivudinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153351332-1868574 06B08_rep_B_Lamivudinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fadK_#3_P4E5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (fadK_#3_P4E5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153431611-1868606 06F08_rep_C_Meclozine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153431611-1868606 06F08_rep_C_Meclozine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121601210-1867012 04A10_rep_B_Bupropion_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121601210-1867012 04A10_rep_B_Bupropion_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201604211-1877988 09D09_rep_C_Tazobactama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201604211-1877988 09D09_rep_C_Tazobactama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152015722-1576701 Batch1_HCC1395_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/feaB_P3D12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (feaB_P3D12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ1_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092256298-1878759 14E05_rep_A_Levalbuterol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092256298-1878759 14E05_rep_A_Levalbuterol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_67.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_67.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111939700-1872593 10F01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111939700-1872593 10F01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR23h1a.mzML at line 689
Specification mandates value for attribute couP8iegT, line 59847, column 40 (pMIBSDR23h1a.mzML, line 59847)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150246648-1924321 1_F10_RGT2_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150246648-1924321 1_F10_RGT2_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D3_preFOS_3_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112846270-1922191 4_E7_GPR1_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112846270-1922191 4_E7_GPR1_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078551/ccms_peak/pseudoalteromonas_120713_P_Piscicida_70-30_MeOH-H2O_FT-IT_2.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A10_id_MSn_negative.mzML at line 21
index 285 is out of bounds for axis 0 with size 285
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_80.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_blank_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M5_id_MSn_positive.mzML at line 21
index 549 is out of bounds for axis 0 with size 549
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152909907-1868358 06G04_rep_A_Metrizamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152909907-1868358 06G04_rep_A_Metrizamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHD06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dgoA_P4A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (dgoA_P4A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153141399-1868472 06E09_rep_B_Hydroxytacrine_maleate_(R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153141399-1868472 06E09_rep_B_Hydroxytacrine_maleate_(R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170125_068EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/de/1ecbedb01bc59295fd65581311f41a/input_file/SH7_20170125_068EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNQ329_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123834853-1876296 08D10_rep_C_Celiprolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123834853-1876296 08D10_rep_C_Celiprolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153018902-1868410 06C10_rep_A_Valacyclovir_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153018902-1868410 06C10_rep_A_Valacyclovir_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD2_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152626288-1868231 06G01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152626288-1868231 06G01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tdk_P5C3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (tdk_P5C3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_B3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpBud3_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_007EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/2a/2bb6704078d9235faea1461cf65715/input_file/QC_20170207_007EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224119606-1870443 01D07_rep_D_Troleandomycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224119606-1870443 01D07_rep_D_Troleandomycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P17_id_MSn_negative.mzML at line 21
index 343 is out of bounds for axis 0 with size 343
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152818404-1577092 Batch3_HT1376_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125836529-1877194 13H11_rep_A_Pyrvinium_pamoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125836529-1877194 13H11_rep_A_Pyrvinium_pamoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111450065-1921079 1_C2_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111450065-1921079 1_C2_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_73_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_73_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170127_038ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/bb/b723d69580b218497c42bbe1decc44/input_file/MMW5_20170127_038ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223602664-1870200 01G07_rep_C_Minaprine dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223602664-1870200 01G07_rep_C_Minaprine dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_N22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_35.mzXML at line 689
Premature end of data in tag msRun line 5, line 19272, column 1 (20121114_35.mzXML, line 19272)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8H02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151349333-1576382 Batch6_OVCAR3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123534075-1876153 08B08_rep_C_Escitalopram_oxalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123534075-1876153 08B08_rep_C_Escitalopram_oxalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114108523-1874826 11E02_rep_D_Olanzapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114108523-1874826 11E02_rep_D_Olanzapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224218064-1870489 01B05_rep_D_Sulfacetamide sodic hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224218064-1870489 01B05_rep_D_Sulfacetamide sodic hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145955068-1864112 02E01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145955068-1864112 02E01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075492.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_105.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123513093-1876136 08C03_rep_B_Camylofine_chlorhydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123513093-1876136 08C03_rep_B_Camylofine_chlorhydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alsB_P4E8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (alsB_P4E8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/253.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR131_5h1a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 44493, column 979 (pBlateR131_5h1a.mzML, line 44493)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150458060-1864825 02B02_rep_C_Khellinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150458060-1864825 02B02_rep_C_Khellinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-1d.mzXML at line 689
Premature end of data in tag peaks line 2031, line 2035, column 7674 (YnYn-1d.mzXML, line 2035)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00072711.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220222_LKM_HEK_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223256186-1870057 01E06_rep_B_Naproxena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223256186-1870057 01E06_rep_B_Naproxena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085693/ccms_peak/MRM-validation cohort/BC MRM 5th batch.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121602476-1867013 04A10_rep_B_Bupropion_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121602476-1867013 04A10_rep_B_Bupropion_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113931436-1874748 11D07_rep_D_Indoprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113931436-1874748 11D07_rep_D_Indoprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GA2_01_16768.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153013024-1868406 06B02_rep_A_Androsteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153013024-1868406 06B02_rep_A_Androsteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_34.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_34.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112532007-1922019 4_G2_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112532007-1922019 4_G2_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224032311-1870407 01C08_rep_D_Doxylamine succinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224032311-1870407 01C08_rep_D_Doxylamine succinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yqhD_P3H11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (yqhD_P3H11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092716/peak/Peak List/M_RM_8257_JRC_POS_2.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_389.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/astC_P4B3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (astC_P4B3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A1Bs5mm_black_P1-A-3_01_23054.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_D11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_D11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124534445-1876632 09F05_rep_A_Sulfamerazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124534445-1876632 09F05_rep_A_Sulfamerazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170207_052EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/cf/35d33de75f1d8a350466ce97d1175c/input_file/MMW4_20170207_052EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_B3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075948.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222829800-1869857 01C09_rep_A_Ethambutol dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222829800-1869857 01C09_rep_A_Ethambutol dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dapF_P3D10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (dapF_P3D10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089385/ccms_peak/TOF_T3_pos_MS1/TOF_T3_Pos-JC-1058-36_02.mzML at line 689
Premature end of data in tag binary line 65510, line 65510, column 21810 (TOF_T3_Pos-JC-1058-36_02.mzML, line 65510)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_AW2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD5_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101113489-1869302 07D11_rep_B_Sulfasalazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101113489-1869302 07D11_rep_B_Sulfasalazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dmsA_P3D2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (dmsA_P3D2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122249477-1879851 15E02_rep_C_Clofibrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122249477-1879851 15E02_rep_C_Clofibrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100512078-1869013 06H01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100512078-1869013 06H01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_G8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152617795-1576991 Batch1_HCC1143_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L9 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112431080-1921966 3_F7_GPR1_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112431080-1921966 3_F7_GPR1_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121225689-1879380 14C11_rep_D_Vorinostata.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121225689-1879380 14C11_rep_D_Vorinostata.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153249989-1868526 06F06_rep_B_Mebhydroline_1,5-naphtalenedisulfonatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153249989-1868526 06F06_rep_B_Mebhydroline_1,5-naphtalenedisulfonatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyi_P3B3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (hyi_P3B3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pykF_P4G9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (pykF_P4G9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100948696-1869234 07F09_rep_B_Phenindioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100948696-1869234 07F09_rep_B_Phenindioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124502904-1862390 03G02_rep_A_Norfloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124502904-1862390 03G02_rep_A_Norfloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uxuB_P5E11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (uxuB_P5E11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/694.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B6_id_MSn_negative.mzML at line 21
index 225 is out of bounds for axis 0 with size 225
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/355.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153041674-1868426 06D01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153041674-1868426 06D01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaZ_P3G6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (waaZ_P3G6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150415154224.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151409982-1924906 4_C3_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151409982-1924906 4_C3_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150732254-1924563 2_A8_RGT2_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150732254-1924563 2_A8_RGT2_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4F02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GE9_01_17077.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091625942-1878453 13D01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091625942-1878453 13D01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112500528-1874099 10G04_rep_D_Clofibric_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112500528-1874099 10G04_rep_D_Clofibric_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlC3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlC3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152751090-1577069 Batch2_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150541031-1924467 1_G3_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150541031-1924467 1_G3_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_89.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150859670-1924638 2_G11_RGT2_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150859670-1924638 2_G11_RGT2_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_71_RIN_15.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_71_RIN_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_G5_id_positive.mzML at line 21
index 353 is out of bounds for axis 0 with size 353
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150231036-1924308 1_G7_RGT2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150231036-1924308 1_G7_RGT2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130305797-1877399 13D10_rep_B_Proguanil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130305797-1877399 13D10_rep_B_Proguanil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_ehigh (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112207351-1873575 10F03_rep_D_Leflunomidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112207351-1873575 10F03_rep_D_Leflunomidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample9n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123839671-1876300 08B03_rep_C_Mometasone_furoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123839671-1876300 08B03_rep_C_Mometasone_furoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GF3_01_16966.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122133457-1867275 04F11_rep_D_Diperodon_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122133457-1867275 04F11_rep_D_Diperodon_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/102-4_MsMs_25min_30eV_GE3_01_4125.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113249393-1922360 1_H11_IZH2_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113249393-1922360 1_H11_IZH2_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150527185-1864848 02G10_rep_C_Thioproperazine dimesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150527185-1864848 02G10_rep_C_Thioproperazine dimesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124522635-1862405 03F07_rep_A_Tiapride_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124522635-1862405 03F07_rep_A_Tiapride_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151609873-1576498 Batch7_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098231/raw/31072022_Mots_HIS2.mzML at line 689
Premature end of data in tag binary line 262825, line 262826, column 11647 (31072022_Mots_HIS2.mzML, line 262826)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8F01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wrbA_P3B4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (wrbA_P3B4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152915853-1577141 Batch5_HOP92_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124710201-1876706 09E03_rep_A_Secnidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124710201-1876706 09E03_rep_A_Secnidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_087a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114637179-1875087 12A09_rep_A_Promethazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114637179-1875087 12A09_rep_A_Promethazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152217625-1868041 05G02_rep_D_Lidoflazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152217625-1868041 05G02_rep_D_Lidoflazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC09_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A6_id_MSn_positive.mzML at line 21
index 690 is out of bounds for axis 0 with size 690
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201036772-1881744 16D07_rep_B_Fenoldopamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201036772-1881744 16D07_rep_B_Fenoldopamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125849224-1877204 13A09_rep_A_Decamethonium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125849224-1877204 13A09_rep_A_Decamethonium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4A05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124200187-1876460 08D02_rep_D_Emedastinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124200187-1876460 08D02_rep_D_Emedastinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153937735-1577649 Batch6_SF539_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30087 - GI-16-102.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101228525-1869362 07G08_rep_B_Molsidomineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101228525-1869362 07G08_rep_B_Molsidomineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202024507-1882188 16A08_rep_D_Amorolfine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202024507-1882188 16A08_rep_D_Amorolfine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydjG_P5B6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ydjG_P5B6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150614615-1924496 2_G3_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150614615-1924496 2_G3_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A9_id_MSn_negative_20240503181158.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111501890-1871511 10E06_rep_B_Ethoxyquina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111501890-1871511 10E06_rep_B_Ethoxyquina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V8_LH_PSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/plsC_P3A2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (plsC_P3A2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122834944-1867615 05A09_rep_A_Zoxazolamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122834944-1867615 05A09_rep_A_Zoxazolamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G04Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD6_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBmegR131_5h1a.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201836094-1882103 16B06_rep_D_Pantoprazole_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201836094-1882103 16B06_rep_D_Pantoprazole_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc059_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc059_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130051428-1877295 13A04_rep_A_Enilconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130051428-1877295 13A04_rep_A_Enilconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170125_022EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b1/749d2fda63d240a9ea4bab58195e89/input_file/SH8_20170125_022EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_G2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LEA1_MS_RA8_01_22690.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092310725-1878770 14F07_rep_A_Estriola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092310725-1878770 14F07_rep_A_Estriola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_262.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201855007-1882118 16C05_rep_D_Nitazoxanideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201855007-1882118 16C05_rep_D_Nitazoxanideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_19073146_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample171.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M4_id_MSn_negative.mzML at line 21
index 356 is out of bounds for axis 0 with size 356
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111454700-1921083 1_F4_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111454700-1921083 1_F4_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8C12_160605030011.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhmA_P3C12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (rhmA_P3C12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150417181346.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J12_id_negative.mzML at line 21
index 279 is out of bounds for axis 0 with size 279
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYD020.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GB6_01_11470.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_G7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1709.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1709.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/679.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2J004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P10_id_MSn_positive.mzML at line 21
index 369 is out of bounds for axis 0 with size 369
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xylH_P3B4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (xylH_P3B4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1134.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A12_id_MSn_negative_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_G11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_H5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_C7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNQ865_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C5_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151907260-1867889 05E03_rep_C_Betamethasoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151907260-1867889 05E03_rep_C_Betamethasoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152319221-1576846 Batch2_NCIH226_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYD008A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2G01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150213460-1864699 02B03_rep_B_Zimelidine dihydrochloride monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150213460-1864699 02B03_rep_B_Zimelidine dihydrochloride monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130422446-1877459 13D08_rep_B_Fluticasone_propionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130422446-1877459 13D08_rep_B_Fluticasone_propionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ghrB_P3D11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (ghrB_P3D11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample195.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151029583-1865082 02A04_rep_D_Edrophonium chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151029583-1865082 02A04_rep_D_Edrophonium chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/manA_P3F4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (manA_P3F4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHL13.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/619.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123318017-1867837 05F01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123318017-1867837 05F01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std d 010a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/310.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150105591-1864166 02H11_rep_B_Gentamicine sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150105591-1864166 02H11_rep_B_Gentamicine sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dgcZ_#1_P5E7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (dgcZ_#1_P5E7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_82.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yihU_P3H7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (yihU_P3H7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_99.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnH_#2_P4B10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (phnH_#2_P4B10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122751733-1880084 15E08_rep_D_Desloratadinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122751733-1880084 15E08_rep_D_Desloratadinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C8_id_MSn_positive.mzML at line 21
index 463 is out of bounds for axis 0 with size 463
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_A10_id_negative.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152706612-1577032 Batch2_NCIH292_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223930571-2227714 Healthy3.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlich1001R23h1a.mzML at line 689
Specification mandates value for attribute valueOhAdE3owHRIaVB0TcmwdE5eEHRMQDCETwCwhErTIIRPJZCESvXghEfJIIRASXCES8oAhE, line 43280, column 155 (pBlich1001R23h1a.mzML, line 43280)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix6_160531094308.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_G4_id_positive.mzML at line 21
index 394 is out of bounds for axis 0 with size 394
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223510916-1870160 01G05_rep_B_Chlorpromazine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223510916-1870160 01G05_rep_B_Chlorpromazine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_G6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100838948-1869179 07G10_rep_A_Trimetazidine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100838948-1869179 07G10_rep_A_Trimetazidine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111912833-1872572 10A02_rep_C_Althiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111912833-1872572 10A02_rep_C_Althiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112325954-1873638 10B07_rep_D_Cefazolin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112325954-1873638 10B07_rep_D_Cefazolin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/624.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/14_D24062013T1817_1399CBU_0016_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152248745-1576822 Batch2_NCIH2122_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_05_dorsal_skin_RESV_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_05_dorsal_skin_RESV_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113221246-1922336 1_C8_IZH2_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113221246-1922336 1_C8_IZH2_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_68.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091804604-1878530 13B11_rep_D_Piribedil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091804604-1878530 13B11_rep_D_Piribedil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-034_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F15_id.mzML at line 21
index 508 is out of bounds for axis 0 with size 508
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1206.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1206.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151434736-1924927 4_A11_SNF3_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151434736-1924927 4_A11_SNF3_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_Blood4_POS.mzXML at line 689
attributes construct error, line 38, column 74 (Person4_Blood4_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d1_292_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 26664, column 1 (SysVirol_IFT001_1918_d1_292_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 26664)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC16.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122634434-1880024 15E03_rep_D_Cyclophosphamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122634434-1880024 15E03_rep_D_Cyclophosphamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007564_031718-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GA2_01_11613.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_84.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_A3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/asnB_#1_P5C5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (asnB_#1_P5C5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101811163-1869637 07G08_rep_D_Molsidominea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101811163-1869637 07G08_rep_D_Molsidominea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/353.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121814693-1879643 15G03_rep_B_Bosentanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121814693-1879643 15G03_rep_B_Bosentanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102024831-1869745 07E11_rep_D_Troloxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102024831-1869745 07E11_rep_D_Troloxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-093_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125920470-1877228 13D09_rep_A_Zuclopenthixol_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125920470-1877228 13D09_rep_A_Zuclopenthixol_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1357.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1357.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124254475-1876504 08B05_rep_D_Dacarbazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124254475-1876504 08B05_rep_D_Dacarbazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_201.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153826783-1577589 Batch6_DU4475_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092632885-1878928 14C07_rep_B_Methantheline_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092632885-1878928 14C07_rep_B_Methantheline_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_35.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_35.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113635292-1874606 11B05_rep_C_Cefsulodin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113635292-1874606 11B05_rep_C_Cefsulodin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_A11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112241317-1873602 10A10_rep_D_Sulfanilamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112241317-1873602 10A10_rep_D_Sulfanilamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Rhodococcus_LYG002B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_E4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101616574-1869542 07H08_rep_C_Dirithromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101616574-1869542 07H08_rep_C_Dirithromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113104235-1922269 1_B5_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113104235-1922269 1_B5_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/258.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151302966-1576343 Batch6_NCIH2171_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101313400-1869398 07F10_rep_B_Thiocolchicosideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101313400-1869398 07F10_rep_B_Thiocolchicosideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151440650-1924932 4_C1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151440650-1924932 4_C1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET115.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET115.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_109.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_0124.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N15_id_MSn_positive.mzML at line 21
index 541 is out of bounds for axis 0 with size 541
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K9_id_MSn_negative.mzML at line 21
index 339 is out of bounds for axis 0 with size 339
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172643101-1889902 Na.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151551903-1576483 Batch7_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A4_id_MSn_negative.mzML at line 21
index 219 is out of bounds for axis 0 with size 219
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GB10_01_16926.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHL13.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153304232-1577323 Batch4_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_O18_id_MSn_negative.mzML at line 21
index 341 is out of bounds for axis 0 with size 341
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_111b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122325174-1867365 04G01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122325174-1867365 04G01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_116.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28022021_Batch02_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145734896-1863999 02D11_rep_A_Triamcinolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145734896-1863999 02D11_rep_A_Triamcinolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124722480-1876716 09H09_rep_A_Fluorometholonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124722480-1876716 09H09_rep_A_Fluorometholonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B19_id_MSn_negative_2.mzML at line 21
index 247 is out of bounds for axis 0 with size 247
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-blank3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-blank3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130040748-1863265 04A03_rep_A_Flavoxate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130040748-1863265 04A03_rep_A_Flavoxate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092209360-1878722 14D05_rep_A_Cyproterone_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092209360-1878722 14D05_rep_A_Cyproterone_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_H5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L15_id.mzML at line 21
index 536 is out of bounds for axis 0 with size 536
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152145536-1576772 Batch2_NCIH2170_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145700421-1863971 02F06_rep_A_Methotrexatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145700421-1863971 02F06_rep_A_Methotrexatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_110.mzXML at line 689
Premature end of data in tag peaks line 22581, line 22585, column 11844 (20121114_110.mzXML, line 22585)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F19_id_negative.mzML at line 21
index 253 is out of bounds for axis 0 with size 253
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample216.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080128/ccms_peak/20100308_Ctherm_SWG_PU4_T03_48hr_SCX_LTQ3_Run2/20100308_Ctherm_SWG_PU4_T03_48hr_SCX_LTQ3_Run2_12.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121825383-1879651 15E10_rep_B_Tripelennamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121825383-1879651 15E10_rep_B_Tripelennamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150305621-1924336 1_A8_RGT2_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150305621-1924336 1_A8_RGT2_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083195.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113131604-1874401 11D11_rep_B_Ethopropazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113131604-1874401 11D11_rep_B_Ethopropazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R131_5h2a.mzML at line 689
Specification mandates value for attribute con, line 66281, column 35 (pBlichMO17R131_5h2a.mzML, line 66281)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092254962-1878758 14E05_rep_A_Levalbuterol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092254962-1878758 14E05_rep_A_Levalbuterol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/005_Urea_Day7_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093032190-1879112 14F01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093032190-1879112 14F01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1145.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1145.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112217499-1873583 10E09_rep_D_Vidarabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112217499-1873583 10E09_rep_D_Vidarabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/SP168.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S40.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S40.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151707965-1576547 Batch4_HPAC_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114113532-1874830 11G09_rep_D_Acetaminophena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114113532-1874830 11G09_rep_D_Acetaminophena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151402838-1576393 Batch6_NCIH2171_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD4_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7D12_160604061914.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153715010-1577529 Batch4_NCIH1666_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person30_plasma_elder_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person30_plasma_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122500529-1879951 15D01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122500529-1879951 15D01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145916972-1864081 02H02_rep_A_Erythromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145916972-1864081 02H02_rep_A_Erythromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAI02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201213334-1881816 16F08_rep_B_Lofepramineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201213334-1881816 16F08_rep_B_Lofepramineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_011ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/05/6ff91f93349829df5dab24c07f0409/input_file/QC_20170127_011ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/araD_P4D4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (araD_P4D4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100609943-1869059 07F09_rep_A_Phenindionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100609943-1869059 07F09_rep_A_Phenindionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5E05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malF_P5B4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (malF_P5B4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153048326-1868431 06C07_rep_B_Buflomedil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153048326-1868431 06C07_rep_B_Buflomedil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD3_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_A5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_64_NOR_49.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_64_NOR_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyaC_P3A12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (hyaC_P3A12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202057589-1878212 09E07_rep_D_Tigecyclinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202057589-1878212 09E07_rep_D_Tigecyclinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/006_Ammonia_Day11_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113038976-1874361 11C06_rep_B_Trichlormethiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113038976-1874361 11C06_rep_B_Trichlormethiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111846345-1872070 10C05_rep_C_Flunixin_megluminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111846345-1872070 10C05_rep_C_Flunixin_megluminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/300.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_112.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_112.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ3_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR23h3a.mzML at line 689
attributes construct error, line 138851, column 145 (pMIBSDR23h3a.mzML, line 138851)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_A12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/283.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153228997-1577294 Batch5_SW620_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096497/peak/20200912_ProgressCurveAnalysis_Eda_set2_eff7_t5_rep1.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000096497/peak/20200912_ProgressCurveAnalysis_Eda_set2_eff7_t5_rep1.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122811705-1867597 05D06_rep_A_Hycanthoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122811705-1867597 05D06_rep_A_Hycanthoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082735/ccms_peak/ST000664/EX00347-lipidomics/Raw data/NEG/BATCH3/20150406_Pooled.mzXML at line 689
Opening and ending tag mismatch: peaks line 20108 and msRun, line 56504, column 11 (20150406_Pooled.mzXML, line 56504)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH8.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151304132-1576344 Batch6_NCIH1155_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M14_id_negative.mzML at line 21
index 261 is out of bounds for axis 0 with size 261
Error processing file: /data/datasets/server/MassIVE/MSV000082728/ccms_peak/ST000661/EX00264-lipidomics/Raw data/NEG/20140728_POOLED.mzXML at line 689
Extra content at the end of the document, line 40920, column 1 (20140728_POOLED.mzXML, line 40920)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H3_id_MSn_negative.mzML at line 21
index 304 is out of bounds for axis 0 with size 304
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trxC_P3H2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (trxC_P3H2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152621419-1868227 06F09_rep_A_Melatoninb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152621419-1868227 06F09_rep_A_Melatoninb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E14_id_MSn_positive.mzML at line 21
index 704 is out of bounds for axis 0 with size 704
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD2_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD2_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113506487-1922480 2_C2_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113506487-1922480 2_C2_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S01_dilute_190201054046.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092435/raw/Group_I_mzML/I100.mzML at line 689
Invalid character: Char 0x0 out of allowed range
, line 76, column 1 (I100.mzML, line 76)
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Kideny_raw files/ISAS_Lumos_kidney_QC1.mzML at line 689
Premature end of data in tag spectrumList line 92, line 54630, column 1 (ISAS_Lumos_kidney_QC1.mzML, line 54630)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_05_blood_RESV_oral_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_05_blood_RESV_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBsubR27_5h2b.mzML at line 689
Opening and ending tag mismatch: spectrum line 236900 and scanWindow, line 236902, column 30 (pBsubR27_5h2b.mzML, line 236902)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_G10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224205212-1870479 01H03_rep_D_Imipramine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224205212-1870479 01H03_rep_D_Imipramine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHF08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_P5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_D9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/002_Urea_Day14_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150412987-1864790 02B06_rep_C_Lynestrenola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150412987-1864790 02B06_rep_C_Lynestrenola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151228013-1576314 Batch5_MALME3M_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170127_057ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/16/2d90bc17e95c02eb54341ec4cd5f65/input_file/SH8_20170127_057ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I22_id_MSn_negative.mzML at line 21
index 324 is out of bounds for axis 0 with size 324
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093214095-1879192 14C09_rep_C_Thiethylperazine_dimalate_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093214095-1879192 14C09_rep_C_Thiethylperazine_dimalate_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sdhC_P3G1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (sdhC_P3G1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/600.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152443416-1576913 Batch1_HCC1806_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/351.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S88.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S88.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122735637-1875771 08E04_rep_A_Zafirlukastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122735637-1875771 08E04_rep_A_Zafirlukastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1093.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090213/ccms_peak/17March2022_008_Blank MeOH_pos 1 .mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person02_blood_youth_POS.mzXML at line 689
attributes construct error, line 41, column 101 (Person02_blood_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153202451-1577273 Batch4_A427_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153255808-1577316 Batch4_NCIH1793_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202127441-1878235 09C10_rep_D_Zonisamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202127441-1878235 09C10_rep_D_Zonisamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aphA_P4B11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (aphA_P4B11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_88.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_33.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_33.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112739610-1922131 4_B1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112739610-1922131 4_B1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130048869-1877293 13A06_rep_A_Floxuridinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130048869-1877293 13A06_rep_A_Floxuridinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150033716-1864141 02B02_rep_B_Khellina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150033716-1864141 02B02_rep_B_Khellina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112643821-1922082 4_A7_GPR1_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112643821-1922082 4_A7_GPR1_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009661_IBD200_E19_B12.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F21_id_MSn_positive.mzML at line 21
index 703 is out of bounds for axis 0 with size 703
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114950474-1875241 12H07_rep_B_Megestrol_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114950474-1875241 12H07_rep_B_Megestrol_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152134344-1868008 05G03_rep_C_Betaxolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152134344-1868008 05G03_rep_C_Betaxolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152622575-1576995 Batch1_CALU3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A3_id_MSn_positive_2uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_B8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222752721-1869829 01B04_rep_A_Hydroflumethiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222752721-1869829 01B04_rep_A_Hydroflumethiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_26_2022_1003_Michael_leming_liver_neg-0.0050.mzML at line 689
Premature end of data in tag binary line 14840, line 14840, column 72497 (3_26_2022_1003_Michael_leming_liver_neg-0.0050.mzML, line 14840)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_149.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kbl_P3E7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (kbl_P3E7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151711551-1576550 Batch7_UMC11_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112121228-1873058 10C01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112121228-1873058 10C01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113940021-1922718 3_C3_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113940021-1922718 3_C3_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_C2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD1_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101646552-1869567 07F04_rep_C_Phenacetina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101646552-1869567 07F04_rep_C_Phenacetina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB4H01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ilvN_P5A4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (ilvN_P5A4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101634305-1869557 07F05_rep_C_Atovaquonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101634305-1869557 07F05_rep_C_Atovaquonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180902_ESH3K_batch1A_repA_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/197-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/894.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000091760/raw/TC9_pellet.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P12_id_MSn_negative.mzML at line 21
index 338 is out of bounds for axis 0 with size 338
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145925398-1864088 02C08_rep_A_Pioglitazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145925398-1864088 02C08_rep_A_Pioglitazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Variovorax_LYG003A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/657.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Blank_5_B-A1_1_5685.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200735575-1881611 16G11_rep_A_Latanoprosta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200735575-1881611 16G11_rep_A_Latanoprosta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person30_blood_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 83 (Person30_blood_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000096497/peak/20200912_ProgressCurveAnalysis_Eda_set3_eff2_t3_rep2.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000096497/peak/20200912_ProgressCurveAnalysis_Eda_set3_eff2_t3_rep2.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysN_P5F6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (cysN_P5F6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M9_id_MSn_positive.mzML at line 21
index 713 is out of bounds for axis 0 with size 713
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-blank (6).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hA2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hA2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_F1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125301021-1862888 03A03_rep_C_Pentylenetetrazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125301021-1862888 03A03_rep_C_Pentylenetetrazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113243425-1874458 11D03_rep_B_Cefoxitin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113243425-1874458 11D03_rep_B_Cefoxitin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122554858-1879993 15H11_rep_D_Hexachloropheneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122554858-1879993 15H11_rep_D_Hexachloropheneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121939543-1867184 04F04_rep_C_Glafenine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121939543-1867184 04F04_rep_C_Glafenine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122238954-1879843 15B03_rep_C_Melengestrol_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122238954-1879843 15B03_rep_C_Melengestrol_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/(-)-epigallocatechin.mzXML at line 689
Premature end of data in tag peaks line 4807, line 4811, column 3561 ((-)-epigallocatechin.mzXML, line 4811)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acnA_#1_P3C1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (acnA_#1_P3C1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153407683-1868587 06A05_rep_B_Idebenoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153407683-1868587 06A05_rep_B_Idebenoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_med (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_22.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_22.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200938431-1881701 16B08_rep_A_Tolcaponea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200938431-1881701 16B08_rep_A_Tolcaponea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150910849-1865021 02F11_rep_D_Tetracycline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150910849-1865021 02F11_rep_D_Tetracycline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082718/ccms_peak/peak/ST000666/EX00376-lipidomics/Raw data/POS/20141119_Pooled.mzXML at line 689
Opening and ending tag mismatch: peaks line 28738 and msRun, line 50633, column 11 (20141119_Pooled.mzXML, line 50633)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121624228-1867030 04C08_rep_B_Clotrimazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121624228-1867030 04C08_rep_B_Clotrimazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B19_id_MSn_negative.mzML at line 21
index 287 is out of bounds for axis 0 with size 287
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122843697-1880125 15H03_rep_D_Moxifloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122843697-1880125 15H03_rep_D_Moxifloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201847895-1878111 09A09_rep_D_Nilvadipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201847895-1878111 09A09_rep_D_Nilvadipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180630_ES_H3K_bacth9_repA_130.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111915301-1872574 10B10_rep_C_Levonordefrinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111915301-1872574 10B10_rep_C_Levonordefrinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125114426-1862802 03H02_rep_C_Etodolaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125114426-1862802 03H02_rep_C_Etodolaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223630275-1870221 01C03_rep_C_Panthenol (D)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223630275-1870221 01C03_rep_C_Panthenol (D)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152042403-1576722 Batch1_NCIH2030_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample011.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD2_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202041010-1878199 09B07_rep_D_Lanatoside_Cb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202041010-1878199 09B07_rep_D_Lanatoside_Cb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hC2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hC2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_133_1A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153218184-1868501 06H02_rep_B_Vatalanibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153218184-1868501 06H02_rep_B_Vatalanibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151416185-1924911 4_E1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151416185-1924911 4_E1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151713760-1925056 4_D11_SNF3_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151713760-1925056 4_D11_SNF3_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114019184-1922753 3_E8_STE2_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114019184-1922753 3_E8_STE2_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200636413-1881567 16C10_rep_A_Ethoxzolamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200636413-1881567 16C10_rep_A_Ethoxzolamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152110341-1576744 Batch1_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190123_ES_H3K_batch15_repB_127.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_131_3A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/436.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12C13_Replicate3_Level1_MSMS_neg.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130030854-1863257 04C03_rep_A_Triprolidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130030854-1863257 04C03_rep_A_Triprolidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222959793-1869925 01F04_rep_A_Triflupromazine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222959793-1869925 01F04_rep_A_Triflupromazine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/624.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113833087-1922658 3_F5_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113833087-1922658 3_F5_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101641625-1869563 07B02_rep_C_Metixene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101641625-1869563 07B02_rep_C_Metixene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tauB_P3D4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (tauB_P3D4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/oxc_P3A5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (oxc_P3A5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_18092931_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153157425-1577269 Batch4_DMS114_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/464-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case159_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case159_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124534125-1862414 03C08_rep_A_Catharanthineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124534125-1862414 03C08_rep_A_Catharanthineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/torY_#2_P4H2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (torY_#2_P4H2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113153196-1874418 11E01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113153196-1874418 11E01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Pseudomonas_breneri_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153451478-1577410 Batch5_A704_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075474.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8C14.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201218_LKM_no_EtOH_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GE2_01_17069.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GD12_01_11508.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_A9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7B03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152140500-1576768 Batch2_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007729_032218-buffer ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/016_1000uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150724415-1924556 2_H8_RGT2_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150724415-1924556 2_H8_RGT2_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/273.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_18_Dorsal_skin_CMC_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_18_Dorsal_skin_CMC_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082718/ccms_peak/ST000666/EX00376-lipidomics/Raw data/POS/20141119_Pooled.mzXML at line 689
Opening and ending tag mismatch: peaks line 28738 and msRun, line 50633, column 11 (20141119_Pooled.mzXML, line 50633)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123220048-1867790 05D07_rep_B_Adenosine_5'-monophosphate_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123220048-1867790 05D07_rep_B_Adenosine_5'-monophosphate_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_QC_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_89.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD2_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_G4_id_positive.mzML at line 21
index 316 is out of bounds for axis 0 with size 316
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111828689-1921653 2_A4_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111828689-1921653 2_A4_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151927895-1576663 Batch7_NCIH2444_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafTreatedA1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafTreatedA1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112018908-1873009 10D10_rep_C_Methacholine_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112018908-1873009 10D10_rep_C_Methacholine_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.hyg_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121347217-1866910 04B06_rep_B_Niflumic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121347217-1866910 04B06_rep_B_Niflumic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/262.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_E11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GE2_01_16833.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/araB_P4B1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (araB_P4B1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/072_70.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114136766-1874849 11B01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114136766-1874849 11B01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007539_031618-1Thr6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153723593-1577536 Batch4_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009511_IBD200_E10_A7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpT_P5D10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (glpT_P5D10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224223212-1870493 01F06_rep_D_Acetohexamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224223212-1870493 01F06_rep_D_Acetohexamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dctA_#3_P6H11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (dctA_#3_P6H11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112834401-1922180 4_B11_GPR1_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112834401-1922180 4_B11_GPR1_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/425.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/278.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113441199-1922458 2_H9_IZH2_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113441199-1922458 2_H9_IZH2_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_H2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GA4_01_16770.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/LiLi-5d.mzXML at line 689
Premature end of data in tag peaks line 1499, line 1503, column 3576 (LiLi-5d.mzXML, line 1503)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pyrH_P4G9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (pyrH_P4G9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151115222-1865118 02B02_rep_D_Khellina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151115222-1865118 02B02_rep_D_Khellina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112620452-1922061 4_B7_GPR1_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112620452-1922061 4_B7_GPR1_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ3_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/puuC_P5C11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (puuC_P5C11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112821058-1874258 11B11_rep_A_Aminophyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112821058-1874258 11B11_rep_A_Aminophyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/311.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152200751-1576784 Batch2_NCIH520_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_B5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101630771-1869554 07D05_rep_C_Pyrazinamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101630771-1869554 07D05_rep_C_Pyrazinamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223639505-1870228 01E09_rep_C_Dicyclomine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223639505-1870228 01E09_rep_C_Dicyclomine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G11_id_MSn_positive.mzML at line 21
index 667 is out of bounds for axis 0 with size 667
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E11_id_MSn_negative.mzML at line 21
index 330 is out of bounds for axis 0 with size 330
Error processing file: /data/datasets/server/MassIVE/MSV000087069/raw/BRB Liquid Convert neg/BBR_R17500_N10_I10e6_E60_neg_06292020.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (BBR_R17500_N10_I10e6_E60_neg_06292020.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_G10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GH6_01_11565.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121412128-1866928 04C04_rep_B_Doxepin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121412128-1866928 04C04_rep_B_Doxepin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6A12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123228421-1876003 08H10_rep_B_Etoricoxibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123228421-1876003 08H10_rep_B_Etoricoxibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-cc4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151947649-1576679 Batch1_HCC1395_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_B8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223141437-1870001 01G06_rep_B_Diphenhydramine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223141437-1870001 01G06_rep_B_Diphenhydramine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150341535-1924366 1_A1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150341535-1924366 1_A1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111644006-1871589 10D07_rep_B_Diethylstilbestrola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111644006-1871589 10D07_rep_B_Diethylstilbestrola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R23h3a.mzML at line 689
Opening and ending tag mismatch: binary line 98326 and binaryDataArray, line 98331, column 31 (pBlichMO17R23h3a.mzML, line 98331)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111901452-1921681 2_H11_GAP1_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111901452-1921681 2_H11_GAP1_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/022_CRa_H9M5_M470_Blank_06_low_pos.mzXML at line 689
Premature end of data in tag peaks line 15163, line 15167, column 19959 (022_CRa_H9M5_M470_Blank_06_low_pos.mzXML, line 15167)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100900227-1869196 07C10_rep_A_Bromperidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100900227-1869196 07C10_rep_A_Bromperidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152449762-1576918 Batch2_IGROV1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124631010-1876675 09D06_rep_A_Oxacillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124631010-1876675 09D06_rep_A_Oxacillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202408929-1878363 10D09_rep_A_Ribostamycin_sulfate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202408929-1878363 10D09_rep_A_Ribostamycin_sulfate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086335/raw/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Brancos/BD_13766.mzML at line 689
Extra content at the end of the document, line 50546, column 1 (BD_13766.mzML, line 50546)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170207_038EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/70/cd191c2a52a6d7cd21906111237a0c/input_file/MMW5_20170207_038EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-qc_elow (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202515367-1878415 10D11_rep_A_Pipenzolate_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202515367-1878415 10D11_rep_A_Pipenzolate_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB1H11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/agm_speB_P4C5_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 552, column 10000848 (agm_speB_P4C5_Aquity_pos.mzXML, line 552)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD2_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/256.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151147197-1865143 02D03_rep_D_Metolazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151147197-1865143 02D03_rep_D_Metolazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-040_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111839793-1872065 10H02_rep_C_(R)_-Naproxen_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111839793-1872065 10H02_rep_C_(R)_-Naproxen_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152858247-1577126 Batch5_HOP92_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I17_id_MSn_negative.mzML at line 21
index 345 is out of bounds for axis 0 with size 345
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122933003-1867661 05G02_rep_B_Lidoflazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122933003-1867661 05G02_rep_B_Lidoflazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_dilute_190201043420.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151151045-1865146 02D06_rep_D_Haloperidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151151045-1865146 02D06_rep_D_Haloperidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_1_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_E3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5H02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample009_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075246.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124520403-1876622 09D04_rep_A_Opipramol_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124520403-1876622 09D04_rep_A_Opipramol_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151753273-1576584 Batch4_DMS53_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike6_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_G7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cmoA_P4C7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (cmoA_P4C7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/956-B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_B10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_B10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201240613-1877840 09H04_rep_B_Dipyronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201240613-1877840 09H04_rep_B_Dipyronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_98.mzXML at line 689
Premature end of data in tag peaks line 32475, line 32479, column 11840 (20121114_98.mzXML, line 32479)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_134_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (15).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125111678-1862800 03F11_rep_C_Indapamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125111678-1862800 03F11_rep_C_Indapamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/QC_mix_170404192808.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Blank_pesticide_170402215141.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B19_id_MSn_positive.mzML at line 21
index 440 is out of bounds for axis 0 with size 440
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224214289-1870486 01A11_rep_D_Sulfaguanidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224214289-1870486 01A11_rep_D_Sulfaguanidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153040384-1868425 06B01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153040384-1868425 06B01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/190_147.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GD11_01_17064.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNQ149_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092746200-1878984 14H09_rep_B_Cefepime_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092746200-1878984 14H09_rep_B_Cefepime_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/235.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151537521-1576471 Batch7_CORL88_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_5_B_rep_4_B-E9_1_5868.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079130/ccms_peak/AIN Coral Growth Experiment mzXML/AIN137_GD5_01_1963.mzXML at line 689
Premature end of data in tag peaks line 6064, line 6064, column 106001 (AIN137_GD5_01_1963.mzXML, line 6064)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151943829-1576676 Batch1_BT549_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124355730-1862337 03A05_rep_A_Ornidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124355730-1862337 03A05_rep_A_Ornidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121512507-1866974 04F01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121512507-1866974 04F01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D6_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000084762/raw/AHU125.mzML at line 689
Premature end of data in tag binary line 29345, line 29345, column 32046 (AHU125.mzML, line 29345)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112159019-1921833 3_D5_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112159019-1921833 3_D5_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_G10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rsgA_P3H8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (rsgA_P3H8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153029292-1868417 06A06_rep_B_Pepstatin_Ab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153029292-1868417 06A06_rep_B_Pepstatin_Ab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_19040307_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101552845-1869523 07A07_rep_C_Colistin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101552845-1869523 07A07_rep_C_Colistin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/exbD_P4E3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (exbD_P4E3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_108.mzXML at line 689
Premature end of data in tag peaks line 21969, line 21973, column 11846 (20121114_108.mzXML, line 21973)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_106.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_B6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1584.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1584.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD2_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_20_Liver_EtOH_control_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_20_Liver_EtOH_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B20_id_MSn_positive.mzML at line 21
index 636 is out of bounds for axis 0 with size 636
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C6_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L19_id_MSn_positive.mzML at line 21
index 544 is out of bounds for axis 0 with size 544
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_010ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c2/ec6e0b0c8c05cf2ccfa205ec3afe69/input_file/QC_20170127_010ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_G4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_G4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084666/raw/InterSpec_SppSwarms/00326_hybapr-comparison.mzXML at line 689
expected '>', line 21725, column 64 (00326_hybapr-comparison.mzXML, line 21725)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121405379-1866923 04B07_rep_B_Isotretinoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121405379-1866923 04B07_rep_B_Isotretinoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151420813-1576408 Batch7_NCIH1734_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F15_id.mzML at line 21
index 577 is out of bounds for axis 0 with size 577
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124251970-1876502 08E09_rep_D_Oxibendazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124251970-1876502 08E09_rep_D_Oxibendazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH44.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gpp_P3C10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (gpp_P3C10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200829284-1881650 16H09_rep_A_Brimonidine_L-Tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200829284-1881650 16H09_rep_A_Brimonidine_L-Tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glsB_P4E11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (glsB_P4E11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/007_CRa_H9M5_M470_L01_K2_high_pos.mzXML at line 689
Premature end of data in tag peaks line 15543, line 15547, column 44525 (007_CRa_H9M5_M470_L01_K2_high_pos.mzXML, line 15547)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111424624-1871482 10E10_rep_B_Sulfameterb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111424624-1871482 10E10_rep_B_Sulfameterb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/adhE_#1_P4A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (adhE_#1_P4A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121518728-1866979 04F05_rep_B_Pimethixene_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121518728-1866979 04F05_rep_B_Pimethixene_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112015773-1921744 2_E11_GAP1_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112015773-1921744 2_E11_GAP1_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121854656-1879673 15E05_rep_B_Ethinylestradiolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121854656-1879673 15E05_rep_B_Ethinylestradiolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100305684-1868913 06D06_rep_D_Cyclosporin_Aa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100305684-1868913 06D06_rep_D_Cyclosporin_Aa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101823667-1869647 07H05_rep_D_Tolazamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101823667-1869647 07H05_rep_D_Tolazamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/622.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D20_id_MSn_positive.mzML at line 21
index 694 is out of bounds for axis 0 with size 694
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yiaK_P3E6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (yiaK_P3E6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Blank_1_B-A1_1_5813.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122852036-1875831 08D05_rep_A_Diclofenac_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122852036-1875831 08D05_rep_A_Diclofenac_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152932441-1577155 Batch5_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100459866-1869003 06B11_rep_D_Erlotiniba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100459866-1869003 06B11_rep_D_Erlotiniba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C18_id_MSn_positive.mzML at line 21
index 459 is out of bounds for axis 0 with size 459
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152546456-1868200 05D05_rep_D_Clopamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152546456-1868200 05D05_rep_D_Clopamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112143311-1921819 2_F3_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112143311-1921819 2_F3_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113151339-1922310 1_A5_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113151339-1922310 1_A5_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094756/peak/02_TO_mLiver_Pel_HILIC_neg.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202245740-1878297 10H11_rep_A_Amrinoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202245740-1878297 10H11_rep_A_Amrinoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J14_id_MSn_negative.mzML at line 21
index 337 is out of bounds for axis 0 with size 337
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_E7_id_negative.mzML at line 21
index 424 is out of bounds for axis 0 with size 424
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-064.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-064.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_120_1A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/577-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152648818-1577017 Batch3_MDAMB157_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Column2_test_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/17.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153337062-1868563 06A10_rep_B_Amiodarone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153337062-1868563 06A10_rep_B_Amiodarone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yihS_#3_P3G12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (yihS_#3_P3G12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-PDAC10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1A01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD4_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152316640-1868086 05G03_rep_D_Betaxolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152316640-1868086 05G03_rep_D_Betaxolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_F8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tsx_P3D8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (tsx_P3D8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ5_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_14_Blood_CMC_control_NEG.mzXML at line 689
attributes construct error, line 38, column 91 (Mouse_14_Blood_CMC_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cueO_P3B9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (cueO_P3B9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1032.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123753337-1876263 08H10_rep_C_Etoricoxibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123753337-1876263 08H10_rep_C_Etoricoxibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O18_id_MSn_positive.mzML at line 21
index 645 is out of bounds for axis 0 with size 645
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_115_3C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_C2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample220_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B3_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124247021-1876498 08G08_rep_D_Folic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124247021-1876498 08G08_rep_D_Folic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151853278-1576634 Batch7_M14_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_SERUM_V3_CAT.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B19_id_MSn_positive_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122042951-1879755 15H05_rep_B_Rufloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122042951-1879755 15H05_rep_B_Rufloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151041750-1924726 3_B2_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151041750-1924726 3_B2_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC13.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1086.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_0124_190125081039.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132933208-1733910 1fb Wound5D 3 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121150014-1879353 14D05_rep_D_Cyproterone_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121150014-1879353 14D05_rep_D_Cyproterone_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152826622-1577099 Batch3_A549_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170127_013ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/eb/15ebdb1028705ceafe0eca40e6c851/input_file/MMW3_20170127_013ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/005_1020_3_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/scpC_P3F5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (scpC_P3F5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample179.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpB_P4A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (atpB_P4A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_143.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/11_D24062013T1650_1399CBU_01QC_B2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224255119-1870518 01F05_rep_D_Mefenamic acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224255119-1870518 01F05_rep_D_Mefenamic acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152029721-1576712 Batch1_UMUC3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101028327-1869266 07F02_rep_B_Pirenperoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101028327-1869266 07F02_rep_B_Pirenperoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Std_20ppm.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153359892-1577368 Batch4_NCIH1793_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201233503-1881831 16F10_rep_B_Besifloxacin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201233503-1881831 16F10_rep_B_Besifloxacin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078603/ccms_peak/DTU_P1/G1H3_RH3_01_7136.mzXML at line 689
Premature end of data in tag peaks line 6712, line 6712, column 233818 (G1H3_RH3_01_7136.mzXML, line 6712)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/speA_P3C9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (speA_P3C9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124517551-1862401 03A08_rep_A_Riluzole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124517551-1862401 03A08_rep_A_Riluzole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6A02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201655403-1882025 16E10_rep_C_Zoledronic_acid_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201655403-1882025 16E10_rep_C_Zoledronic_acid_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C3_id_MSn_positive.mzML at line 21
index 694 is out of bounds for axis 0 with size 694
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111749055-1872025 10D05_rep_C_Fenoprofen_calcium_salt_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111749055-1872025 10D05_rep_C_Fenoprofen_calcium_salt_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122037761-1879751 15F04_rep_B_Azithromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122037761-1879751 15F04_rep_B_Azithromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2E13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115033227-1875276 12E03_rep_B_Thioperamide_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115033227-1875276 12E03_rep_B_Thioperamide_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125712440-1877129 13G08_rep_A_Tocainide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125712440-1877129 13G08_rep_A_Tocainide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_G11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G03P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093243149-1879215 14E05_rep_C_Levalbuterol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093243149-1879215 14E05_rep_C_Levalbuterol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4H08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lsrA_#2_P4B5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (lsrA_#2_P4B5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/prpC_P3E6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (prpC_P3E6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114101610-1922790 4_H9_STE2_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114101610-1922790 4_H9_STE2_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD2_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/028_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092394/updates/2023-07-25_luciacancelada_5bcba47d/peak/pos_peak/JCB-IP_5Jan23_7_LR1_pos_1.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000092394/updates/2023-07-25_luciacancelada_5bcba47d/peak/pos_peak/JCB-IP_5Jan23_7_LR1_pos_1.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sgbU_P4H6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (sgbU_P4H6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/19072021_Batch07_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124701267-1876699 09G04_rep_A_Famprofazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124701267-1876699 09G04_rep_A_Famprofazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112731643-1922124 4_B9_GPR1_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112731643-1922124 4_B9_GPR1_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C8_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG001B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD6_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100910175-1869204 07D09_rep_A_Budesonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100910175-1869204 07D09_rep_A_Budesonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121816026-1879644 15E06_rep_B_Fluocinolone_acetonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121816026-1879644 15E06_rep_B_Fluocinolone_acetonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ3_8 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/646.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_V11_036_prot_19_IMS_12Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_SERUM_V1_CAT.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G9_id.mzML at line 21
index 523 is out of bounds for axis 0 with size 523
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112605008-1922048 4_H9_GPR1_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112605008-1922048 4_H9_GPR1_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101911131-1869685 07F06_rep_D_Methoxamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101911131-1869685 07F06_rep_D_Methoxamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114109794-1874827 11E02_rep_D_Olanzapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114109794-1874827 11E02_rep_D_Olanzapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153737923-1577548 Batch6_HL60_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHJ01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121643447-1879573 15E01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121643447-1879573 15E01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_Extracellular/mzML/Ex_Baicalin_2_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_070_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1053.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30126 - GI-16-102.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1019.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223406690-1870111 01B09_rep_B_Idoxuridinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223406690-1870111 01B09_rep_B_Idoxuridinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_88.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Bosea_LYD011.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114240645-1874901 12F05_rep_A_Flucytosineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114240645-1874901 12F05_rep_A_Flucytosineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122217590-1867310 04B09_rep_D_Antazoline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122217590-1867310 04B09_rep_D_Antazoline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2L001B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113454122-1874526 11D01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113454122-1874526 11D01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082742/ccms_peak/ST000775/EX00417/Raw data/Lipidomics/NEG/20150318_Pooled.mzXML at line 689
Specification mandates value for attribute precurso, line 7810, column 32 (20150318_Pooled.mzXML, line 7810)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_24_2022_1003_Michael_leming_liver_neg-0.0048.mzML at line 689
Premature end of data in tag binary line 13808, line 13808, column 1746722 (3_24_2022_1003_Michael_leming_liver_neg-0.0048.mzML, line 13808)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.TU6071_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_B5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223946969-2227728 PAT50.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G7_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222803058-1869837 01C06_rep_A_Thiamphenicola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222803058-1869837 01C06_rep_A_Thiamphenicola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223944676-1870371 01E05_rep_C_Isoxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223944676-1870371 01E05_rep_C_Isoxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/131_110_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6H07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GE11_01_16842.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112340893-1874035 10H04_rep_D_Cloperastine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112340893-1874035 10H04_rep_D_Cloperastine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151800511-1576590 Batch3_5637_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_009EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/8c/7ebcebab5572bb0423fc0e2d7e12c4/input_file/QC_20170207_009EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114039783-1874803 11A09_rep_D_Furazolidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114039783-1874803 11A09_rep_D_Furazolidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125435895-1862965 03A03_rep_D_Pentylenetetrazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125435895-1862965 03A03_rep_D_Pentylenetetrazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHK04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153742765-1577552 Batch6_MDAMB435S_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1056.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114326324-1874938 12G09_rep_A_Timolol_maleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114326324-1874938 12G09_rep_A_Timolol_maleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/eda_#1_P4A5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (eda_#1_P4A5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample19n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1205.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1205.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112456792-1921988 3_F9_GPR1_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112456792-1921988 3_F9_GPR1_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180831_ES_H3K_batch11_repC_152.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151718752-1576556 Batch4_DU145_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GF10_01_12157.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/guanine.mzXML at line 689
Premature end of data in tag peaks line 5367, line 5371, column 73192 (guanine.mzXML, line 5371)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113124951-1922287 1_E2_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113124951-1922287 1_E2_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100410246-1868964 06D01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100410246-1868964 06D01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_G3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_10_305_prot_17_IMS_19Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080705/ccms_peak/RAW/0h_lysC_BA.mzML at line 648
Multiple activations for a single precursor is not yet implemented. 
                                                         File: input_file/0h_lysC_BA.mzML 
                                                         Scan: 745
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B9_id_MSn_positive.mzML at line 21
index 557 is out of bounds for axis 0 with size 557
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114904906-1875204 12F04_rep_B_Primidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114904906-1875204 12F04_rep_B_Primidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115023477-1875268 12B10_rep_B_Adrenosteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115023477-1875268 12B10_rep_B_Adrenosteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152056192-1576733 Batch1_NCIH2030_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130545356-1877524 13B04_rep_C_Pirlindole_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130545356-1877524 13B04_rep_C_Pirlindole_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std d 100a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C3_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D3_id_MSn_negative.mzML at line 21
index 324 is out of bounds for axis 0 with size 324
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153655991-1577513 Batch4_RT4_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123909468-1876324 08E11_rep_C_Hydroxychloroquine_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123909468-1876324 08E11_rep_C_Hydroxychloroquine_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113029151-1922240 1_C11_IZH2_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113029151-1922240 1_C11_IZH2_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_53.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122652446-1880038 15C01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122652446-1880038 15C01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D18_id_negative.mzML at line 21
index 256 is out of bounds for axis 0 with size 256
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR08/withcoumaricacidwithoutKBr/140523coum.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/001_Nitrate_Day4_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111514318-1871520 10B03_rep_B_Streptozotocinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111514318-1871520 10B03_rep_B_Streptozotocinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201929470-1882145 16B09_rep_D_Altrenogesta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201929470-1882145 16B09_rep_D_Altrenogesta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_A3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I22_id_negative.mzML at line 21
index 247 is out of bounds for axis 0 with size 247
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B22_id_negative.mzML at line 21
index 291 is out of bounds for axis 0 with size 291
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111728662-1921601 1_D1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111728662-1921601 1_D1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145946555-1864105 02A08_rep_B_Diazoxidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145946555-1864105 02A08_rep_B_Diazoxidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125258594-1862886 03H03_rep_C_Scopolamin-N-oxide_hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125258594-1862886 03H03_rep_C_Scopolamin-N-oxide_hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (25).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153452694-1577411 Batch5_A704_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150815635-1924600 2_H10_RGT2_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150815635-1924600 2_H10_RGT2_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample152_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007513_031618-0.01Thr3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L11_id_MSn_positive.mzML at line 21
index 511 is out of bounds for axis 0 with size 511
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_62.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ05031555.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_D2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0044_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_081b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201925504-1882142 16H07_rep_D_Milnacipran_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201925504-1882142 16H07_rep_D_Milnacipran_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153433048-1577395 Batch5_SW620_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075185.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121055402-1879312 14G03_rep_D_Fexofenadine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121055402-1879312 14G03_rep_D_Fexofenadine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1H04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_56_NOR_54.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_56_NOR_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysK_P4D8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (cysK_P4D8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123636227-1876202 08E01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123636227-1876202 08E01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample092.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD2_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case218_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case218_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151849646-1576631 Batch7_M14_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151623550-1925014 4_B7_SNF3_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151623550-1925014 4_B7_SNF3_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151433831-1576419 Batch6_HCC1937_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125711081-1863091 03H09_rep_D_Lomefloxacin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125711081-1863091 03H09_rep_D_Lomefloxacin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B19_id_negative.mzML at line 21
index 245 is out of bounds for axis 0 with size 245
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_C1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/73-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153727161-1577539 Batch5_HT29_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151759305-1576589 Batch3_5637_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122107758-1879774 15A09_rep_B_Mepivacaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122107758-1879774 15A09_rep_B_Mepivacaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES73.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_63.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/001_Nitrate_Day0_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122600069-1879997 15D10_rep_D_Anthralinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122600069-1879997 15D10_rep_D_Anthralinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A23_id_MSn_positive.mzML at line 21
index 483 is out of bounds for axis 0 with size 483
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlD2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlD2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/242.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114427467-1874988 12B04_rep_A_Felbinaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114427467-1874988 12B04_rep_A_Felbinaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114135534-1874848 11B01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114135534-1874848 11B01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122758376-1875789 08A05_rep_A_Pentobarbitalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122758376-1875789 08A05_rep_A_Pentobarbitalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_120125_nanoDESI_Mosquito_18hrs_HCL_17.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1G02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GF8_01_17213.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_med.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153804638-1868777 06A01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153804638-1868777 06A01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person06_RBC_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 95 (Person06_RBC_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/XYT-56d.mzXML at line 689
Premature end of data in tag peaks line 3247, line 3251, column 7671 (XYT-56d.mzXML, line 3251)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114847311-1875190 12A08_rep_B_Oxybenzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114847311-1875190 12A08_rep_B_Oxybenzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094756/peak/02_TO_mPlasma_CROT_main_BOTTOM_pos_HILIC.mzML at line 689
Premature end of data in tag binary line 480089, line 480089, column 25954 (02_TO_mPlasma_CROT_main_BOTTOM_pos_HILIC.mzML, line 480089)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample111_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145629612-1863946 02A10_rep_A_Busulfanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145629612-1863946 02A10_rep_A_Busulfanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_H9_01_12415.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STY2_30EV_RA4_01_22502.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Positive_Veh_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_QC_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_QC_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170207_047EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c9/862547f3a7409ce03bf427673f28d4/input_file/SH8_20170207_047EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150514621-1864838 02F11_rep_C_Tetracycline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150514621-1864838 02F11_rep_C_Tetracycline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150349748-1924373 1_C4_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150349748-1924373 1_C4_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150927526-1924662 2_C10_RGT2_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150927526-1924662 2_C10_RGT2_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123930464-1876341 08A04_rep_D_Pyridostigmine_iodideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123930464-1876341 08A04_rep_D_Pyridostigmine_iodideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30246 - GI-18-356.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201830452-1878098 09B11_rep_D_Avermectin_B1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201830452-1878098 09B11_rep_D_Avermectin_B1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_H8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample103.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_blank_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080337/ccms_peak/ASM/Strains/VVP415_ASM_BA10_01_30361.mzXML at line 689
Premature end of data in tag mzXML line 2, line 3, column 1 (VVP415_ASM_BA10_01_30361.mzXML, line 3)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30106 - GI-14-429.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBsubR324h3b.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_79.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_79.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_24_Liver_EtOH_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_24_Liver_EtOH_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/patD_P3D9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (patD_P3D9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121626724-1867032 04A11_rep_B_Alprenolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121626724-1867032 04A11_rep_B_Alprenolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/4_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150648259-1864910 02B01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150648259-1864910 02B01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145741017-1864004 02C03_rep_A_Amoxapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145741017-1864004 02C03_rep_A_Amoxapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G19_id.mzML at line 21
index 600 is out of bounds for axis 0 with size 600
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092421588-1878825 14C05_rep_A_Meprylcaine_hydrochloride_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092421588-1878825 14C05_rep_A_Meprylcaine_hydrochloride_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1018.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lsrB_P3H10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (lsrB_P3H10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/022_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153030782-1868418 06G01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153030782-1868418 06G01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/glcD_yihX_P5E4_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 634, column 10000692 (glcD_yihX_P5E4_Aquity_neg.mzXML, line 634)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111617804-1921540 1_E1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111617804-1921540 1_E1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_C6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152106626-1576741 Batch1_HCC38_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121233688-1879386 14C03_rep_D_Ioxaglic_acid_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121233688-1879386 14C03_rep_D_Ioxaglic_acid_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170209_040ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/2e/812c7698d54e1cb1134f13e2aed83d/input_file/SH8_20170209_040ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purH_P5D7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (purH_P5D7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150100520-1864162 02G06_rep_B_Chlortetracycline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150100520-1864162 02G06_rep_B_Chlortetracycline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_03_liver_control_oral_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_03_liver_control_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151742666-1576576 Batch3_NCIH2228_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_65.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_2_Dorsal_skin_HO_control_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_2_Dorsal_skin_HO_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151514599-1576452 Batch7_KM12_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample199.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1116.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092333297-1878788 14G06_rep_A_Verteporfina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092333297-1878788 14G06_rep_A_Verteporfina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fiu_P3C10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (fiu_P3C10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_17121408_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151424364-1576411 Batch7_CORL23_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V2_EDTAk3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_233.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095819/raw/20240116_02_PA14_1ppm_1uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P20_id_MSn_positive.mzML at line 21
index 553 is out of bounds for axis 0 with size 553
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_C2_id_negative.mzML at line 21
index 184 is out of bounds for axis 0 with size 184
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151746152-1576578 Batch4_HS578T_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R224h3a.mzML at line 689
Opening and ending tag mismatch: binary line 83572 and isolationWindow, line 83573, column 33 (pBlichMO17R224h3a.mzML, line 83573)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V3_LH_PSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130359819-1877441 13E08_rep_B_Fursultiamine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130359819-1877441 13E08_rep_B_Fursultiamine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYC001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pdxK_P3H10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (pdxK_P3H10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111434852-1921066 1_F1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111434852-1921066 1_F1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/gentiobiose_neg.mzXML at line 689
Premature end of data in tag peaks line 7767, line 7771, column 44521 (gentiobiose_neg.mzXML, line 7771)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190128_ES_H3K_batch15_repB_220.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/glucys_gshB_P4D9_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (glucys_gshB_P4D9_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151620076-1925011 4_D1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151620076-1925011 4_D1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096480/raw/230928_01_HILIC_neg/230925_M201_01_HILIC_neg_5.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/serB_#1_P5A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (serB_#1_P5A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082760/ccms_peak/MTBLS198/raw/MTBLS198/JALI118DietC_V4.mzXML at line 689
Premature end of data in tag peaks line 9800, line 9804, column 19949 (JALI118DietC_V4.mzXML, line 9804)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Blank_pesticide_170404064351.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170125_037EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/d4/0fa3a297d781ad6d7181fbec02095f/input_file/MMW3_20170125_037EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_4_B_rep_1_B-D7_1_5541.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OAW3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223121434-1869986 01A09_rep_A_Amprolium hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223121434-1869986 01A09_rep_A_Amprolium hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125549588-1877065 12C04_rep_D_Diloxanide_furoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125549588-1877065 12C04_rep_D_Diloxanide_furoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/R48_II_ESI-.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfD_P5H4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (hyfD_P5H4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123255865-1867819 05A01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123255865-1867819 05A01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150151107-1864682 02B08_rep_B_Disulfirama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150151107-1864682 02B08_rep_B_Disulfirama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122046930-1879758 15G11_rep_B_Fosinoprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122046930-1879758 15G11_rep_B_Fosinoprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_030ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/02/3e7bdc603e49b511ce996751b5cfc7/input_file/QC_20170127_030ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS304P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100213621-1868872 06F09_rep_D_Melatoninb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100213621-1868872 06F09_rep_D_Melatoninb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113658327-1874625 11H01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113658327-1874625 11H01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8B06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/034_CRa_H9M5_M470_L01_K1_low_pos.mzXML at line 689
Premature end of data in tag peaks line 15011, line 15015, column 7671 (034_CRa_H9M5_M470_L01_K1_low_pos.mzXML, line 15015)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124201646-1862246 03C11_rep_A_Tolbutamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124201646-1862246 03C11_rep_A_Tolbutamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d1_284_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 16352, column 1 (SysVirol_IFL001_Cal04RG_d1_284_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 16352)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F9_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165926638-2227589 PAT42.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/292.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person13_blood_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 100 (Person13_blood_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093233097-1879207 14D10_rep_C_Methicillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093233097-1879207 14D10_rep_C_Methicillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112804323-1922153 4_D10_GPR1_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112804323-1922153 4_D10_GPR1_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B4_id_MSn_positive.mzML at line 21
index 686 is out of bounds for axis 0 with size 686
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/953-A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120955230-1879267 14H01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120955230-1879267 14H01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201123594-1877784 09D11_rep_B_Warfarina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201123594-1877784 09D11_rep_B_Warfarina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2C08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124503761-1876610 09B09_rep_A_Suxibuzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124503761-1876610 09B09_rep_A_Suxibuzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180628_ES_H3K_bacth8_repC_109.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087684/raw/mzXML/NCI_MCOH2018-B42.mzXML at line 689
Premature end of data in tag msRun line 5, line 43997, column 1 (NCI_MCOH2018-B42.mzXML, line 43997)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_100.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086486/ccms_peak/peak/sample/MSplate12_glpB_b2242_D11_platePN_rep2_SALT_GEIII_0-758_1534.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (MSplate12_glpB_b2242_D11_platePN_rep2_SALT_GEIII_0-758_1534.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151712773-1576551 Batch7_UMC11_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-118_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/949.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152656332-1868254 06C03_rep_A_Zotepinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152656332-1868254 06C03_rep_A_Zotepinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122843004-1875824 08E09_rep_A_Oxibendazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122843004-1875824 08E09_rep_A_Oxibendazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Ac21.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150341335-1864766 02E11_rep_C_Dexamethasone acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150341335-1864766 02E11_rep_C_Dexamethasone acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GC2_01_12097.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202020608-1882185 16A03_rep_D_Silodosina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202020608-1882185 16A03_rep_D_Silodosina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/17_D24062013T1944_1399CBU_0011_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1418.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1418.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130843490-1877666 13E08_rep_C_Fursultiamine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130843490-1877666 13E08_rep_C_Fursultiamine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202431893-1878381 10F03_rep_A_Leflunomideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202431893-1878381 10F03_rep_A_Leflunomideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087805/ccms_peak/Media_R3_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_F3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152529446-1576951 Batch2_SW900_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD2_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151259424-1576340 Batch7_CORL88_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180827_ES_H3K_batch11_repA_166.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153449039-1577408 Batch4_PANC0813_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/986.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GA1_01_11622.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113246040-1922357 1_C1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113246040-1922357 1_C1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/617.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151710339-1576549 Batch4_DMS53_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145838115-1864050 02G06_rep_A_Chlortetracycline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145838115-1864050 02G06_rep_A_Chlortetracycline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD3_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121702690-1879588 15E04_rep_A_Aripiprazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121702690-1879588 15E04_rep_A_Aripiprazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152910022-1577136 Batch5_NCIH3255_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210308_AD_84.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125819701-1877181 13E04_rep_A_Azapropazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125819701-1877181 13E04_rep_A_Azapropazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151429164-1576415 Batch6_CORL279_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ahpC_#1_P4H4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (ahpC_#1_P4H4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S86.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S86.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dcd_P3B8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (dcd_P3B8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201607203-1881989 16B11_rep_C_Estramustinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201607203-1881989 16B11_rep_C_Estramustinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_A5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123229698-1876004 08H06_rep_B_Aceclidine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123229698-1876004 08H06_rep_B_Aceclidine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180429_ES_H3K_batch3_repD_48.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybjG_P4F2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (ybjG_P4F2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uidA_#1_P4A12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (uidA_#1_P4A12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150723035-1864937 02A06_rep_C_Baclofen (R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150723035-1864937 02A06_rep_C_Baclofen (R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_E4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122052943-1867242 04B04_rep_C_Norethindronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122052943-1867242 04B04_rep_C_Norethindronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151145424-1924781 3_A3_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151145424-1924781 3_A3_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xdhA_P3G9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (xdhA_P3G9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/889.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086335/raw/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Diaporthe CarGL-8A/M8A1Ca.mzML at line 689
error parsing attribute name, line 890, column 76 (M8A1Ca.mzML, line 890)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_dilute_190131190935.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093002355-1879092 14F02_rep_C_Spaglumic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093002355-1879092 14F02_rep_C_Spaglumic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G12P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124342137-1876543 09C06_rep_A_Tetraethylenepentamine_pentahydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124342137-1876543 09C06_rep_A_Tetraethylenepentamine_pentahydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M19_id_MSn_negative.mzML at line 21
index 372 is out of bounds for axis 0 with size 372
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_B8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223800856-2227636 PAT33.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/endBlank.mzML at line 689
Premature end of data in tag binary line 243, line 243, column 4603 (endBlank.mzML, line 243)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Bosea_sp__LYD014.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075694.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_B7_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD5_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201344725-1877887 09D03_rep_C_Sumatriptan_succinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201344725-1877887 09D03_rep_C_Sumatriptan_succinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101439824-1869467 07H01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101439824-1869467 07H01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G18_id_MSn_positive.mzML at line 21
index 663 is out of bounds for axis 0 with size 663
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_60.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample042_ne.mzml at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000086351/peak/Sample042_ne.mzml
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_46_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_46_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153230203-1577295 Batch5_SW620_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007538_031618-1Thr6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pspE_#2_P5F11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (pspE_#2_P5F11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113318022-1874486 11D08_rep_B_Carbenoxolone_disodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113318022-1874486 11D08_rep_B_Carbenoxolone_disodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/828.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/031_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1208.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1208.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaG_P3F11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (paaG_P3F11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/napG_P3B7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (napG_P3B7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4A02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/770.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223912622-2227698 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_C6_id_MSn_negative.mzML at line 21
index 292 is out of bounds for axis 0 with size 292
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112013499-1921742 2_E3_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112013499-1921742 2_E3_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2D08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR27_5h1a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 135170, column 1316 (pMIBSDR27_5h1a.mzML, line 135170)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151646441-1576529 Batch7_CAL51_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145900588-1864068 02C06_rep_A_Danazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145900588-1864068 02C06_rep_A_Danazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD5_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Column2_test_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170127_061ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/53/6e608f71b4ccf158507900d9bf7e34/input_file/SH7_20170127_061ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GA12_01_17145.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152214774-1576795 Batch1_LK2_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_D6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNQ329_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_35_40x_2022_1006_Michael_pos-0.0061.mzML at line 689
Premature end of data in tag binary line 6347, line 6347, column 2354657 (3_35_40x_2022_1006_Michael_pos-0.0061.mzML, line 6347)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092213148-1878725 14A09_rep_A_Piperacetazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092213148-1878725 14A09_rep_A_Piperacetazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111515550-1871521 10F11_rep_B_Cinoxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111515550-1871521 10F11_rep_B_Cinoxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR23h2a.mzML at line 689
Specification mandates value for attribute cvRe514, line 80737, column 27 (pMIBSDR23h2a.mzML, line 80737)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124643595-1876685 09C08_rep_A_Acefyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124643595-1876685 09C08_rep_A_Acefyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG007A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125343108-1862922 03B08_rep_D_Sulfamethoxazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125343108-1862922 03B08_rep_D_Sulfamethoxazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153137362-1577253 Batch4_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G2_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_066ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/bf/520a5ecd449c11c4e11cf790ec777f/input_file/QC_20170209_066ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_131_1B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112334411-1921916 3_A11_GPR1_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112334411-1921916 3_A11_GPR1_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151453602-1924943 4_F8_SNF3_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151453602-1924943 4_F8_SNF3_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130803946-1877634 13E03_rep_C_Alfaxaloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130803946-1877634 13E03_rep_C_Alfaxaloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_G7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_F5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/exuT_#3_P4D8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (exuT_#3_P4D8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1041.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ispG_P5A2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (ispG_P5A2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_69.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2E05Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113835195-1922660 3_F8_STE2_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113835195-1922660 3_F8_STE2_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123755932-1876265 08D04_rep_C_Zaleplonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123755932-1876265 08D04_rep_C_Zaleplonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151932264-1867909 05C04_rep_C_Desipramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151932264-1867909 05C04_rep_C_Desipramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170209_034ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/93/0c30cc53a54e245b1a742a74b86fac/input_file/MMW5_20170209_034ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124548080-1862542 03D02_rep_B_Midodrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124548080-1862542 03D02_rep_B_Midodrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223424054-1870124 01A10_rep_B_Hydrochlorothiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223424054-1870124 01A10_rep_B_Hydrochlorothiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/99.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151440965-1576425 Batch6_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/XYT-38d.mzXML at line 689
Premature end of data in tag peaks line 2601, line 2605, column 7672 (XYT-38d.mzXML, line 2605)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_100.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151533902-1576468 Batch6_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151812642-1576600 Batch4_HPAC_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/pserL_serB_P5A7_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (pserL_serB_P5A7_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201903510-1878123 09D11_rep_D_Warfarinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201903510-1878123 09D11_rep_D_Warfarinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130156208-1877345 13C10_rep_B_Chlormadinone_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130156208-1877345 13C10_rep_B_Chlormadinone_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD3_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122140095-1879798 15B04_rep_C_Bromhexine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122140095-1879798 15B04_rep_C_Bromhexine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S25_0126_190128162407.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisQ_#1_P4G10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (hisQ_#1_P4G10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124015722-1876377 08C10_rep_D_Azelastine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124015722-1876377 08C10_rep_D_Azelastine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR07/WithKBr/140311P1.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_3_P_rep_4_B-D3_1_5665.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_18111330_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151800511-1576590 Batch3_5637_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/899-A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090213/raw/9March2022_004_VH WD Trang 10x_neg .mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_338_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_H6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/344.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/099_90.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/C48_II_ESI+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/005_Urea_Day7_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124334625-1862320 03B08_rep_A_Sulfamethoxazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124334625-1862320 03B08_rep_A_Sulfamethoxazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151028289-1865081 02F05_rep_D_Diltiazem hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151028289-1865081 02F05_rep_D_Diltiazem hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlC2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlC2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0043_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD3_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_C6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_A7_id_negative.mzML at line 21
index 250 is out of bounds for axis 0 with size 250
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-040.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-040.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_87.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/416.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101207469-1869345 07B06_rep_B_Terconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101207469-1869345 07B06_rep_B_Terconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG14.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_96.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O4_id_MSn_positive.mzML at line 21
index 393 is out of bounds for axis 0 with size 393
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122931322-1875862 08B10_rep_A_Lacidipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122931322-1875862 08B10_rep_A_Lacidipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124515805-1876619 09F02_rep_A_Tylosinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124515805-1876619 09F02_rep_A_Tylosinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_97.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152306490-1576836 Batch1_HX147_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A4_id_MSn_positive.mzML at line 21
index 715 is out of bounds for axis 0 with size 715
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224013394-1870393 01D01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224013394-1870393 01D01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151339989-1924880 4_E10_SNF3_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151339989-1924880 4_E10_SNF3_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2G09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113543986-1922512 2_F4_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113543986-1922512 2_F4_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Pool_8_B-A2_1_5653.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150304435-1924335 1_A8_RGT2_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150304435-1924335 1_A8_RGT2_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151830573-1576615 Batch7_UACC257_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/003_Ammonia_Day14_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/modA_P4A5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (modA_P4A5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_E4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OAD5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151324395-1576361 Batch7_SUM149PT_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD6_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125557483-1877071 12A07_rep_D_Clioquinola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125557483-1877071 12A07_rep_D_Clioquinola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122356572-1867390 04D10_rep_D_Methylprednisolone,_6-alphaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122356572-1867390 04D10_rep_D_Methylprednisolone,_6-alphaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170125_030EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/46/8d2b5d6f6b78b37a3217720e8776e6/input_file/QC_20170125_030EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_0123_190124025023.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100159647-1868861 06E07_rep_D_Carteolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100159647-1868861 06E07_rep_D_Carteolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-meoh.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100638291-1869082 07G08_rep_A_Molsidomineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100638291-1869082 07G08_rep_A_Molsidomineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_77.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4C10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_E3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_C10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100458648-1869002 06F11_rep_D_Dinoprost_trometamolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100458648-1869002 06F11_rep_D_Dinoprost_trometamolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152623797-1576996 Batch1_HCC15_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_12_NOR_47.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_12_NOR_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHH02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A17_id_MSn_positive.mzML at line 21
index 624 is out of bounds for axis 0 with size 624
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_65.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_65.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201439521-1881926 16C06_rep_C_Nateglinideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201439521-1881926 16C06_rep_C_Nateglinideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tolC_P3B11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (tolC_P3B11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_36_Blank.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_36_Blank.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224219359-1870490 01B05_rep_D_Sulfacetamide sodic hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224219359-1870490 01B05_rep_D_Sulfacetamide sodic hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/37-4_idMsMs_25min_40eV_GE6_01_4262.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_18091336_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201052042-1877761 09B05_rep_B_Benfotiamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201052042-1877761 09B05_rep_B_Benfotiamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121304057-1879408 15E06_rep_A_Fluocinolone_acetonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121304057-1879408 15E06_rep_A_Fluocinolone_acetonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113107788-1922272 1_D1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113107788-1922272 1_D1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201732000-1882053 16B06_rep_C_Pantoprazole_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201732000-1882053 16B06_rep_C_Pantoprazole_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lptB_#1_P4D11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (lptB_#1_P4D11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_plasma_1h_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer1_plasma_1h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8F03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201216_LKM_Silica_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152938172-1868380 06A11_rep_A_Amphotericin_Ba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152938172-1868380 06A11_rep_A_Amphotericin_Ba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-46d.mzXML at line 689
Premature end of data in tag peaks line 8434, line 8438, column 3574 (YnYn-46d.mzXML, line 8438)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C17_id_MSn_negative.mzML at line 21
index 319 is out of bounds for axis 0 with size 319
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152852368-1577121 Batch3_NCIH322M_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2C1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2C1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114120888-1874836 11H11_rep_D_Carbachola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114120888-1874836 11H11_rep_D_Carbachola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123840939-1876301 08B03_rep_C_Mometasone_furoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123840939-1876301 08B03_rep_C_Mometasone_furoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_115_3C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ2_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_G8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P17_id_MSn_negative.mzML at line 21
index 354 is out of bounds for axis 0 with size 354
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC07_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152232125-1868052 05F09_rep_D_Bezafibratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152232125-1868052 05F09_rep_D_Bezafibratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102047788-1869764 07G06_rep_D_Tetramisole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102047788-1869764 07G06_rep_D_Tetramisole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114418732-1922966 4_G5_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114418732-1922966 4_G5_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/403.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113019338-1874348 11A03_rep_B_Methazolamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113019338-1874348 11A03_rep_B_Methazolamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control124_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control124_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_117.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125843035-1863168 04G03_rep_A_Lincomycin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125843035-1863168 04G03_rep_A_Lincomycin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121943457-1867187 04C03_rep_C_Triprolidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121943457-1867187 04C03_rep_C_Triprolidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M9_id_MSn_positive.mzML at line 21
index 563 is out of bounds for axis 0 with size 563
Error processing file: /data/datasets/server/MassIVE/MSV000085103/ccms_peak/mzML/JB-182_100um.mzML at line 689
Premature end of data in tag binary line 220233, line 220233, column 10753 (JB-182_100um.mzML, line 220233)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112736885-1874223 11H01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112736885-1874223 11H01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224115478-1870440 01E09_rep_D_Dicyclomine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224115478-1870440 01E09_rep_D_Dicyclomine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cyoD_P4C11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (cyoD_P4C11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202150012-1878253 09E06_rep_D_Ibutilide_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202150012-1878253 09E06_rep_D_Ibutilide_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201651300-1878023 09F11_rep_C_Cefmetazole_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201651300-1878023 09F11_rep_C_Cefmetazole_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_global_LFD30_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ompL_P4H3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ompL_P4H3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007694_032218-5CRP2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/36-4_MsMs_25min_20eV_GE4_01_4128.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101324731-1869407 07F11_rep_B_Clorsulona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101324731-1869407 07F11_rep_B_Clorsulona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/273.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/36-4_MsMs_25min_40eV_GE4_01_4130.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_0126_190127183809.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151734280-1576569 Batch4_DMS53_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GC12_01_11960.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112626356-1874167 11F06_rep_A_Beclomethasone_dipropionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112626356-1874167 11F06_rep_A_Beclomethasone_dipropionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D8_id_MSn_positive.mzML at line 21
index 391 is out of bounds for axis 0 with size 391
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A5_id_MSn_positive.mzML at line 21
index 639 is out of bounds for axis 0 with size 639
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124514537-1876618 09F02_rep_A_Tylosina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124514537-1876618 09F02_rep_A_Tylosina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_134b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151135168-1924772 3_F8_SNF3_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151135168-1924772 3_F8_SNF3_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125006002-1876806 12E01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125006002-1876806 12E01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_19032112_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151052267-1865100 02F01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151052267-1865100 02F01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092545384-1878891 14F06_rep_B_Cyclopentolate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092545384-1878891 14F06_rep_B_Cyclopentolate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cyaA_#1_P4H3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (cyaA_#1_P4H3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxH_P3A5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (lpxH_P3A5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210108_AD_13.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0047_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample176.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112720900-1874210 11D04_rep_A_Ifosfamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112720900-1874210 11D04_rep_A_Ifosfamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tmk_P4D4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (tmk_P4D4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/359.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/7_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_A1_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case186_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case186_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114652524-1875099 12B11_rep_B_Methylatropine_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114652524-1875099 12B11_rep_B_Methylatropine_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_A3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009609_IBD200_E16_B8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD1_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151125589-1865126 02D01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151125589-1865126 02D01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_E11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210108_AD_49.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079788/ccms_peak/Human_GITract_organic_renamed_mzxml_march2016/03282016_human.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Blank_5_B-A1_1_5872.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111715056-1871613 10H03_rep_B_Propidium_iodidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111715056-1871613 10H03_rep_B_Propidium_iodidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087808/raw/RIGHT_SSL_EI_sleep_STER_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1623.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1623.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/188-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I16_id_MSn_negative.mzML at line 21
index 357 is out of bounds for axis 0 with size 357
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH33.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223642121-1870230 01D01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223642121-1870230 01D01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201019135-1881731 16E11_rep_B_Cefpodoxime_proxetila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201019135-1881731 16E11_rep_B_Cefpodoxime_proxetila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/201901027_ES_H3K_batch15B_repA_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000099145/peak/mzML/363184421.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000099145/peak/mzML/363184421.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202105982-1882220 16D04_rep_D_Benidipine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202105982-1882220 16D04_rep_D_Benidipine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114305547-1874921 12A05_rep_A_Meglumineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114305547-1874921 12A05_rep_A_Meglumineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153351496-1577361 Batch5_SW620_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/824.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A3Bs10mm_black_P1-A-6_01_23057.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.afg_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_107b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180420_ES_H3K_batch6_repC_102.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC14_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000085122/peak/2.mzXML at line 255
Error -3 while decompressing data: invalid distance too far back
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152336766-1576860 Batch2_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/467.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112035237-1873022 10G09_rep_C_Hexylcaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112035237-1873022 10G09_rep_C_Hexylcaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1348.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1348.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123402702-1876079 08G06_rep_B_Cytarabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123402702-1876079 08G06_rep_B_Cytarabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B07Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151709151-1576548 Batch4_DMS53_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122416044-1879917 15F04_rep_C_Azithromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122416044-1879917 15F04_rep_C_Azithromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_121b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_25_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_25_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28022021_Batch02_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223008145-1869931 01C03_rep_A_Panthenol (D)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223008145-1869931 01C03_rep_A_Panthenol (D)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/araA_P4C3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (araA_P4C3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/4.2_4OI.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223517411-1870165 01C06_rep_B_Thiamphenicola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223517411-1870165 01C06_rep_B_Thiamphenicola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125701368-1863083 03A11_rep_D_Phenelzine_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125701368-1863083 03A11_rep_D_Phenelzine_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fecC_#4_P3G4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (fecC_#4_P3G4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_04_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_04_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4E05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/pa181_cdsA_P4F1_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (pa181_cdsA_P4F1_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trpD_P4H5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (trpD_P4H5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130830866-1877656 13F10_rep_C_Tribenosideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130830866-1877656 13F10_rep_C_Tribenosideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_A4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125748374-1877157 13B11_rep_A_Piribedil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125748374-1877157 13B11_rep_A_Piribedil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112450448-1874091 10G02_rep_D_Clobetasol_propionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112450448-1874091 10G02_rep_D_Clobetasol_propionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112501335-1921992 3_D11_GPR1_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112501335-1921992 3_D11_GPR1_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091634408-1878459 13F11_rep_D_Rimexoloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091634408-1878459 13F11_rep_D_Rimexoloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122328602-1879881 15H01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122328602-1879881 15H01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112556434-1874143 11C08_rep_A_Propantheline_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112556434-1874143 11C08_rep_A_Propantheline_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201106400-1881766 16D08_rep_B_Adapaleneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201106400-1881766 16D08_rep_B_Adapaleneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mscM_#2_P4D9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (mscM_#2_P4D9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc008_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc008_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHD04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case208_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case208_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/talA_P3B2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (talA_P3B2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113455399-1874527 11D01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113455399-1874527 11D01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085122/peak/25.mzXML at line 255
Error -3 while decompressing data: incorrect data check
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_qc_med.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A11_id_MSn_negative.mzML at line 21
index 233 is out of bounds for axis 0 with size 233
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152019586-1576704 Batch1_HCC1806_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Micromonospora_sp_BM6C002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200601514-1881541 16G10_rep_A_Oxymetholonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200601514-1881541 16G10_rep_A_Oxymetholonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_A5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201800108-1878075 09G05_rep_D_Bromoprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201800108-1878075 09G05_rep_D_Bromoprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/968.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/005_Urea_Day17_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122910662-1867643 05F06_rep_A_Methiothepin_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122910662-1867643 05F06_rep_A_Methiothepin_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115004034-1875252 12B07_rep_B_N-Acetyl-L-leucinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115004034-1875252 12B07_rep_B_N-Acetyl-L-leucinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201158494-1877809 09E01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201158494-1877809 09E01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/175-4_idMsMs_25min_50eV_GE2_01_4242.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD4_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_H9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223428044-1870127 01H08_rep_B_Prednisonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223428044-1870127 01H08_rep_B_Prednisonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007630_032118-0.01Thr1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170209_023ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/08/e9a525e534e61cf1bce95eb692843c/input_file/MMW5_20170209_023ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/252.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MIXEE_20170207_070EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/4c/f61574763bb269cb31cecc5dca09a2/input_file/MIXEE_20170207_070EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG018A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112436639-1921971 3_B11_GPR1_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112436639-1921971 3_B11_GPR1_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_95.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoN_P3H5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (nuoN_P3H5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdpF_P4C11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (kdpF_P4C11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B15_id.mzML at line 21
index 521 is out of bounds for axis 0 with size 521
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc047_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc047_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084610/updates/2019-12-02_jgauglitz_e0da9482/peak/mzXML_data_shift/samples/83501_RA10_01_49726.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1101-A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD4_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113953609-1922730 3_A1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113953609-1922730 3_A1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152121886-1867998 05F05_rep_C_Methylergometrine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152121886-1867998 05F05_rep_C_Methylergometrine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223217280-1870028 01F10_rep_B_Pheniramine maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223217280-1870028 01F10_rep_B_Pheniramine maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151144197-1576278 Batch5_SBC5_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frdB_#2_P4E6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (frdB_#2_P4E6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101216290-1869352 99b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101216290-1869352 99b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125427152-1862958 03B07_rep_D_Iproniazide_phosphatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125427152-1862958 03B07_rep_D_Iproniazide_phosphatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1425.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1425.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1875.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1875.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101302144-1869389 07A07_rep_B_Colistin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101302144-1869389 07A07_rep_B_Colistin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S120.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S120.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/prpD_P3E12_pos.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2A04Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d3_281_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 41660, column 1 (SysVirol_IFT001_1918_d3_281_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 41660)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151253641-1924840 3_E11_SNF3_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151253641-1924840 3_E11_SNF3_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009397_IBD200_E3_B12.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122357721-1867391 04D10_rep_D_Methylprednisolone,_6-alphab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122357721-1867391 04D10_rep_D_Methylprednisolone,_6-alphab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Resveratrol_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1449.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1449.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET119.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET119.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/35.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093132474-1879158 14B02_rep_C_Moricizine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093132474-1879158 14B02_rep_C_Moricizine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_plasma_24h_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer1_plasma_24h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gcd_#4_P4D6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (gcd_#4_P4D6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike4_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hycB_#2_P5A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (hycB_#2_P5A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_198.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Blank_pesticide_Swabs_170405072118.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yeiG_P4B10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (yeiG_P4B10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230424 - 2-JHU39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/apaH_P4C2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (apaH_P4C2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124255781-1876505 08B05_rep_D_Dacarbazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124255781-1876505 08B05_rep_D_Dacarbazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_E8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_164.mzXML at line 689
Premature end of data in tag peaks line 20320, line 20324, column 11844 (20121114_164.mzXML, line 20324)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122314433-1879870 15D03_rep_C_Mesnaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122314433-1879870 15D03_rep_C_Mesnaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125619486-1863049 03C02_rep_D_Ampyroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125619486-1863049 03C02_rep_D_Ampyroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J12_id_MSn_positive.mzML at line 21
index 341 is out of bounds for axis 0 with size 341
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_C2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200537315-1881523 16G03_rep_A_Loteprednol_etabonatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200537315-1881523 16G03_rep_A_Loteprednol_etabonatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170127_026ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/2a/fc3122f28c4671ae98af0cf8fa8dd8/input_file/SH8_20170127_026ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D23_id_MSn_positive.mzML at line 21
index 378 is out of bounds for axis 0 with size 378
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/265.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_23_Dorsal_skin_EtOH_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_23_Dorsal_skin_EtOH_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample226_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007531_031618-1Thr3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample051_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112013804-1873005 10F03_rep_C_Leflunomideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112013804-1873005 10F03_rep_C_Leflunomideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_E1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201338362-1881880 16G07_rep_B_Alosetron_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201338362-1881880 16G07_rep_B_Alosetron_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fes_P5C3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (fes_P5C3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6G01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101745933-1869616 07F04_rep_D_Phenacetinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101745933-1869616 07F04_rep_D_Phenacetinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/861.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113954726-1922731 3_A1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113954726-1922731 3_A1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130139307-1877332 13D03_rep_B_Pizotifen_malateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130139307-1877332 13D03_rep_B_Pizotifen_malateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097681/peak/amino acids/030521-b1-OV-6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample187.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122951863-1875878 08A03_rep_A_Mevastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122951863-1875878 08A03_rep_A_Mevastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD2_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130108385-1877308 13G09_rep_B_Benzathine_benzylpenicillinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130108385-1877308 13G09_rep_B_Benzathine_benzylpenicillinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151207221-1576297 Batch5_NCIH345_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092227222-1878736 14B05_rep_A_Levopropoxyphene_napsylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092227222-1878736 14B05_rep_A_Levopropoxyphene_napsylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111422708-1921056 1_F3_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111422708-1921056 1_F3_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092203464-1878717 14C01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092203464-1878717 14C01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153124284-1868459 06G05_rep_B_Quetiapine_hemifumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153124284-1868459 06G05_rep_B_Quetiapine_hemifumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH16.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111435946-1871491 10H02_rep_B_(R)_-Naproxen_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111435946-1871491 10H02_rep_B_(R)_-Naproxen_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_8_40x_2022_1006_Michael_pos-0.0026.mzML at line 689
Premature end of data in tag binary line 3351, line 3351, column 13828 (1_8_40x_2022_1006_Michael_pos-0.0026.mzML, line 3351)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nagE_#1_P4A4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (nagE_#1_P4A4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_113.mzXML at line 689
Premature end of data in tag msRun line 5, line 23063, column 1 (20121114_113.mzXML, line 23063)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151059959-1865106 02H08_rep_D_Gallamine triethiodidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151059959-1865106 02H08_rep_D_Gallamine triethiodidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/acser_cysE_P3B8_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 634, column 10008530 (acser_cysE_P3B8_Aquity_pos.mzXML, line 634)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007509_031618-0.01Thr2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C7_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A1_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5A12_160601202502.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152850062-1577119 Batch3_EPLC272H_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130207491-1877354 13E10_rep_B_Pivampicillinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130207491-1877354 13E10_rep_B_Pivampicillinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190128201626.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD2_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I16_id.mzML at line 21
index 521 is out of bounds for axis 0 with size 521
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1218.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1218.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/62-4_MsMs_25min_50eV_GE2_01_4121.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150636447-1864901 02E04_rep_C_Dehydrocholic acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150636447-1864901 02E04_rep_C_Dehydrocholic acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170209_046ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a5/2dbc0832b70870b9e374603d83985a/input_file/MMW5_20170209_046ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S105.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S105.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151426772-1576413 Batch7_CORL88_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112023945-1873013 10B02_rep_C_Sulfaquinoxaline_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112023945-1873013 10B02_rep_C_Sulfaquinoxaline_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/846.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_081a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201701983-1882030 16G10_rep_C_Oxymetholoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201701983-1882030 16G10_rep_C_Oxymetholoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pbpG_P3C9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (pbpG_P3C9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L8_id_MSn_positive.mzML at line 21
index 552 is out of bounds for axis 0 with size 552
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201015034-1881728 16F01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201015034-1881728 16F01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_A10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202147698-1878251 09H11_rep_D_Cefuroxime_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202147698-1878251 09H11_rep_D_Cefuroxime_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122628047-1880019 15B02_rep_D_Acetylcysteineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122628047-1880019 15B02_rep_D_Acetylcysteineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121023120-1879288 14B01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121023120-1879288 14B01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201331023-1877877 09G04_rep_C_Famprofazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201331023-1877877 09G04_rep_C_Famprofazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D8_id.mzML at line 21
index 540 is out of bounds for axis 0 with size 540
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_35_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_35_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A2_id_negative_20230130215022.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wbbI_#1_P4C10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (wbbI_#1_P4C10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample198_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_E5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/344.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/chaA_P5E3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (chaA_P5E3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081773.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111607645-1921531 1_D11_GAP1_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111607645-1921531 1_D11_GAP1_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114036139-1874800 11F05_rep_D_Roxithromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114036139-1874800 11F05_rep_D_Roxithromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124535400-1862415 03A02_rep_A_Isoniazida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124535400-1862415 03A02_rep_A_Isoniazida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153603574-1868679 06F06_rep_C_Mebhydroline_1,5-naphtalenedisulfonateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153603574-1868679 06F06_rep_C_Mebhydroline_1,5-naphtalenedisulfonateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111656189-1921573 1_B4_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111656189-1921573 1_B4_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/581.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F7_id_MSn_negative.mzML at line 21
index 327 is out of bounds for axis 0 with size 327
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_NC101_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122812877-1867598 05G11_rep_A_Fusidic_acid_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122812877-1867598 05G11_rep_A_Fusidic_acid_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample212.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150632302-1924511 2_B7_RGT2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150632302-1924511 2_B7_RGT2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frmB_#3_P4G4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (frmB_#3_P4G4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190123222451.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_16061440_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/2agpe161_aas_P3B7_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 552, column 10010930 (2agpe161_aas_P3B7_Aquity_pos.mzXML, line 552)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E1_id_negative.mzML at line 21
index 270 is out of bounds for axis 0 with size 270
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_RBC_0h_POS.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer1_RBC_0h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153253318-1577314 Batch4_NCIH2286_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150643046-1864906 02A01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150643046-1864906 02A01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091839293-1878558 13F01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091839293-1878558 13F01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124304530-1876512 08E05_rep_D_Butenafine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124304530-1876512 08E05_rep_D_Butenafine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-6-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/255.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201027423-1881737 16E05_rep_B_Benzoxiquinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201027423-1881737 16E05_rep_B_Benzoxiquinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-047_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G9_id_MSn_negative.mzML at line 21
index 356 is out of bounds for axis 0 with size 356
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/645.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_066ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/bf/4da026440c2f97db675ed913600dad/input_file/QC_20170209_066ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122318277-1879873 15A07_rep_C_Clavulanate_potassium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122318277-1879873 15A07_rep_C_Clavulanate_potassium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100814832-1869160 07G01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100814832-1869160 07G01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_G12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control226_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control226_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112011121-1921740 2_H1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112011121-1921740 2_H1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_49.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180628_ES_H3K_bacth8_repC_104.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_49_CNR_54.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_49_CNR_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_H4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223732973-1870269 01C11_rep_C_Antipyrine, 4-hydroxya.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223732973-1870269 01C11_rep_C_Antipyrine, 4-hydroxya.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074332.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190319758-1889786 Wa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glsA_#1_P4B9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (glsA_#1_P4B9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_139.mzXML at line 689
Premature end of data in tag peaks line 22819, line 22823, column 3651 (20121114_139.mzXML, line 22823)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153724780-1577537 Batch4_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_024EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/f5/6f4e6b8b9e645cef87c0731476e16b/input_file/QC_20170209_024EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152000467-1576689 Batch1_NCIH2073_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125528500-1877049 12B10_rep_D_Adrenosteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125528500-1877049 12B10_rep_D_Adrenosteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_C7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122248137-1879850 15E02_rep_C_Clofibratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122248137-1879850 15E02_rep_C_Clofibratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112919739-1874304 11E01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112919739-1874304 11E01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200830592-1881651 16G09_rep_A_Palonosetron_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200830592-1881651 16G09_rep_A_Palonosetron_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122119096-1867263 04D11_rep_D_Quinidine_hydrochloride_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122119096-1867263 04D11_rep_D_Quinidine_hydrochloride_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152036155-1576717 Batch1_NCIH1975_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151408822-1576398 Batch6_MOLT4_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_131_3A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H18_id_MSn_positive.mzML at line 21
index 334 is out of bounds for axis 0 with size 334
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S29.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S29.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111733436-1921605 1_E11_GAP1_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111733436-1921605 1_E11_GAP1_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_D6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_34_2022_1003_Michael_leming_liver_neg-0.0060.mzML at line 689
Premature end of data in tag binary line 13998, line 13998, column 694433 (3_34_2022_1003_Michael_leming_liver_neg-0.0060.mzML, line 13998)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBmegR331_5h1a.mzML at line 21
index 3098 is out of bounds for axis 0 with size 3098
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L13_id_MSn_positive.mzML at line 21
index 530 is out of bounds for axis 0 with size 530
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gadC_P5H12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (gadC_P5H12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150614102-1864884 02F06_rep_C_Methotrexatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150614102-1864884 02F06_rep_C_Methotrexatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_07_NOR_53.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_07_NOR_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114252244-1922889 4_G11_STE2_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114252244-1922889 4_G11_STE2_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHH01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rutB_P5D9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (rutB_P5D9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYB013.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR07/WithKBr/140311P4.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170127_021ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/7f/5a818ef25fc958a956611381602c96/input_file/MMW5_20170127_021ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/856.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_90.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/u23ga_lpxH_P3A5_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (u23ga_lpxH_P3A5_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121423709-1879468 15H07_rep_A_Rosiglitazone_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121423709-1879468 15H07_rep_A_Rosiglitazone_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151820997-1576607 Batch7_UACC257_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201932095-1878145 09H02_rep_D_Sulfabenzamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201932095-1878145 09H02_rep_D_Sulfabenzamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153527139-1577439 Batch5_HCT116_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153628413-1577490 Batch4_PANC0813_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151907720-1576646 Batch5_COLO205_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224127086-1870449 01G06_rep_D_Diphenhydramine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224127086-1870449 01G06_rep_D_Diphenhydramine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2C3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2C3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_96.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d3_275_lipid__Neg_17Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 35613, column 1 (SysVirol_IFL001_Cal04RG_d3_275_lipid__Neg_17Sep13_13-07-01.mzXML, line 35613)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_187.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/SP168.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M7_id_MSn_positive.mzML at line 21
index 553 is out of bounds for axis 0 with size 553
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122236312-1879841 15H06_rep_C_Pravastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122236312-1879841 15H06_rep_C_Pravastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E21_id_negative.mzML at line 21
index 256 is out of bounds for axis 0 with size 256
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130751712-1877624 13E11_rep_C_Lodoxamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130751712-1877624 13E11_rep_C_Lodoxamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/749.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ7_3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_G8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111514444-1921100 1_F9_GAP1_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111514444-1921100 1_F9_GAP1_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122136958-1867278 04G10_rep_D_Amodiaquin_dihydrochloride_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122136958-1867278 04G10_rep_D_Amodiaquin_dihydrochloride_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_0123.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_18072701_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125837837-1877195 13E01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125837837-1877195 13E01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153402354-1577370 Batch4_NCIH1651_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/blank_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_blood_1h_NEG.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer4_blood_1h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200905931-1881677 16G05_rep_A_Lomerizine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200905931-1881677 16G05_rep_A_Lomerizine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lsrA_#2_P4B5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (lsrA_#2_P4B5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G21_id_MSn_positive.mzML at line 21
index 420 is out of bounds for axis 0 with size 420
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F7_id_MSn_positive.mzML at line 21
index 384 is out of bounds for axis 0 with size 384
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person15_RBC_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Person15_RBC_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170125_015EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/58/0062fe5dc194d439fb523222e353f7/input_file/MMW6_20170125_015EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151312389-1576351 Batch7_SNB75_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112711890-1874203 11H08_rep_A_Scopolamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112711890-1874203 11H08_rep_A_Scopolamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_48_RIN_20.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_48_RIN_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202009358-1878174 09E08_rep_D_Tramadol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202009358-1878174 09E08_rep_D_Tramadol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GB6_01_16922.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_09_blood_control_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_09_blood_control_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122218928-1867311 04B09_rep_D_Antazoline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122218928-1867311 04B09_rep_D_Antazoline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_133_2A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111957124-1921728 2_G2_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111957124-1921728 2_G2_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122159604-1867296 04F06_rep_D_Pergolide_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122159604-1867296 04F06_rep_D_Pergolide_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fhuD_P3D12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (fhuD_P3D12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_30_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_30_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/527-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/001_Soil_WaterExtra_1_Col1_JX_12172015_151217200829.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purM_P6B10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (purM_P6B10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125707279-1877125 13H09_rep_A_Methyldopate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125707279-1877125 13H09_rep_A_Methyldopate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5A010.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122408941-1867400 04E06_rep_D_Chenodiola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122408941-1867400 04E06_rep_D_Chenodiola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153049923-1577215 Batch3_PANC0403_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007550_031618-1CRP2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_222.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A5_id_MSn_positive.mzML at line 21
index 441 is out of bounds for axis 0 with size 441
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_5_P_rep_3_B-D6_1_5668.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122422381-1867411 04G02_rep_D_Lisinoprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122422381-1867411 04G02_rep_D_Lisinoprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M12_id_MSn_negative.mzML at line 21
index 354 is out of bounds for axis 0 with size 354
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125510199-1862993 03F06_rep_D_Mefexamide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125510199-1862993 03F06_rep_D_Mefexamide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STY2_40EV_RA4_01_22508.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_A15M_pos_IMS1_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_131_3C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/002_Soil_10mMExtra_2_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124050122-1876404 08D03_rep_D_Etofenamatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124050122-1876404 08D03_rep_D_Etofenamatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151922020-1576658 Batch7_NCIH209_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150750967-1924579 2_B2_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150750967-1924579 2_B2_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124312061-1862302 03B05_rep_A_Alverine_citrate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124312061-1862302 03B05_rep_A_Alverine_citrate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152408098-1576885 Batch2_NCIH2291_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person07_RBC_elder_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Person07_RBC_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_189.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151241385-1924829 3_B1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151241385-1924829 3_B1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125852645-1863176 04B06_rep_A_Niflumic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125852645-1863176 04B06_rep_A_Niflumic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093108426-1879139 14B08_rep_C_Oxprenolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093108426-1879139 14B08_rep_C_Oxprenolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET56.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET56.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/coaD_P5H4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (coaD_P5H4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_120_3B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_77.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R124h1a.mzML at line 689
Opening and ending tag mismatch: binary line 124400 and scanWindow, line 124401, column 30 (pBlichMO17R124h1a.mzML, line 124401)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223032499-1869949 01D08_rep_A_Pyrimethaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223032499-1869949 01D08_rep_A_Pyrimethaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/12_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M18_id_MSn_negative.mzML at line 21
index 313 is out of bounds for axis 0 with size 313
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample004_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200856622-1881670 16H01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200856622-1881670 16H01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/004_Soil_WaterIntra_3_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/142-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100845252-1869184 07B02_rep_A_Metixene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100845252-1869184 07B02_rep_A_Metixene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1374.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1374.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dppC_P3C3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (dppC_P3C3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5F01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152251272-1576824 Batch2_NCIH2444_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1422.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1422.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124544465-1876639 09G02_rep_A_Trihexyphenidyl-D,L_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124544465-1876639 09G02_rep_A_Trihexyphenidyl-D,L_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narY_P4H5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (narY_P4H5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EBM011B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150418081345.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_MSMS_2022_1003_Michael_leming_liver_neg-0015.mzML at line 689
Premature end of data in tag binary line 23639, line 23639, column 663728 (pooled_MSMS_2022_1003_Michael_leming_liver_neg-0015.mzML, line 23639)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aceE_P3G6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (aceE_P3G6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Positive_Veh_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample135.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224137317-1870457 01C10_rep_D_Antipyrinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224137317-1870457 01C10_rep_D_Antipyrinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/NEC1_MS_RA7_01_22602.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201944910-1882157 16F04_rep_D_Terbinafinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201944910-1882157 16F04_rep_D_Terbinafinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130707608-1877589 13B05_rep_C_Pronethalol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130707608-1877589 13B05_rep_C_Pronethalol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113759438-1922629 3_H9_STE2_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113759438-1922629 3_H9_STE2_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_4_P_rep_1_B-B8_1_5650.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/20221212_carryover_test_noISTD_blank01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/nad_nadR_P4E8_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024913 (nad_nadR_P4E8_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090775/peak/converties targeted/SAD8c-t.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201220_LKM_20to1_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180703_ES_H3K_batch9_repC_pWT.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A1_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J14_id_MSn_positive.mzML at line 21
index 505 is out of bounds for axis 0 with size 505
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET84.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET84.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201220408-1877825 09H09_rep_B_Fluorometholoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201220408-1877825 09H09_rep_B_Fluorometholoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_54.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_E3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114043545-1922774 3_H4_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114043545-1922774 3_H4_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125544659-1863021 03D09_rep_D_Salbutamolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125544659-1863021 03D09_rep_D_Salbutamolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151938717-1867914 05D11_rep_C_Droperidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151938717-1867914 05D11_rep_C_Droperidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/766.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111743641-1921614 1_E2_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111743641-1921614 1_E2_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/296.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_RBC4_POS.mzXML at line 689
attributes construct error, line 38, column 72 (Person4_RBC4_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_17121408_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_B9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122421310-1879921 15D07_rep_C_Enoxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122421310-1879921 15D07_rep_C_Enoxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/882.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151549511-1576481 Batch7_SN12C_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201329677-1877876 09G04_rep_C_Famprofazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201329677-1877876 09G04_rep_C_Famprofazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case54_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case54_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152642922-1577012 Batch2_NCIH838_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145835689-1864048 02C07_rep_A_Nicorandilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145835689-1864048 02C07_rep_A_Nicorandilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C9_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007493_031618-Unst3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Blank_pesticide_170404080748.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_A7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100350280-1868948 06G07_rep_D_Efavirenzb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100350280-1868948 06G07_rep_D_Efavirenzb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I21_id_MSn_negative.mzML at line 21
index 324 is out of bounds for axis 0 with size 324
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_A10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202253356-1878303 10F07_rep_A_Guaifenesinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202253356-1878303 10F07_rep_A_Guaifenesinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090651/raw/021722_SH_BW1_30-45V.mzXML at line 689
expected '>', line 20436, column 34 (021722_SH_BW1_30-45V.mzXML, line 20436)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gadB_P4F9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (gadB_P4F9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_G12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/932.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125445340-1877016 12H06_rep_D_Florfenicolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125445340-1877016 12H06_rep_D_Florfenicolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1559.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1559.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/BAT_raw files/Lumos_ISAS_BAT_LABELED_2.mzML at line 689
Premature end of data in tag spectrumList line 92, line 67690, column 1 (Lumos_ISAS_BAT_LABELED_2.mzML, line 67690)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170207_055EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/3d/6be5f6e45933bd5becfc76f79e7521/input_file/MMW5_20170207_055EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argG_P4F7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (argG_P4F7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125313246-1876946 12F05_rep_D_Flucytosineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125313246-1876946 12F05_rep_D_Flucytosineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150859337-1865012 02F04_rep_D_Hydroxyzine dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150859337-1865012 02F04_rep_D_Hydroxyzine dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122729956-1880067 15G02_rep_D_Gatifloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122729956-1880067 15G02_rep_D_Gatifloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narU_#2_P4E3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (narU_#2_P4E3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122036370-1867229 04G04_rep_C_Telenzepine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122036370-1867229 04G04_rep_C_Telenzepine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_046_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_83.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_83.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102130483-1869799 07E02_rep_D_Lofexidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102130483-1869799 07E02_rep_D_Lofexidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/413.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150807375-1924593 2_G5_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150807375-1924593 2_G5_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_G2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082738/ccms_peak/ST000780/EX00361-lipidomics/Raw data/NEG/20150304_Authentic.mzXML at line 689
error parsing attribute name, line 19501, column 14 (20150304_Authentic.mzXML, line 19501)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124901333-1862696 03H07_rep_B_Dilazep_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124901333-1862696 03H07_rep_B_Dilazep_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153621985-1868694 06D09_rep_C_Doxorubicin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153621985-1868694 06D09_rep_C_Doxorubicin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/204-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD2_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D5_id_MSn_negative.mzML at line 21
index 316 is out of bounds for axis 0 with size 316
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223943494-1870370 01C06_rep_C_Thiamphenicolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223943494-1870370 01C06_rep_C_Thiamphenicolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145611954-1863932 02B04_rep_A_Azacyclonolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145611954-1863932 02B04_rep_A_Azacyclonolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111705073-1871605 10A11_rep_B_Balsalazide_Sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111705073-1871605 10A11_rep_B_Balsalazide_Sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092144865-1878702 14D10_rep_A_Methicillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092144865-1878702 14D10_rep_A_Methicillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125856034-1877209 13G02_rep_A_Isradipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125856034-1877209 13G02_rep_A_Isradipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112036138-1921761 2_C11_GAP1_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112036138-1921761 2_C11_GAP1_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/add_P5G9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (add_P5G9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/683.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112904150-1874292 11D02_rep_A_Butacainea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112904150-1874292 11D02_rep_A_Butacainea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_99.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_99.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151617031-1576504 Batch7_7860_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124209275-1862252 03D05_rep_A_Nimesulideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124209275-1862252 03D05_rep_A_Nimesulideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112359558-1921938 3_G5_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112359558-1921938 3_G5_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202014324-1878178 09D10_rep_D_Ibandronate_sodium_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202014324-1878178 09D10_rep_D_Ibandronate_sodium_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_72.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007727_032218-buffer ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-CCM-PA-QC-01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153223913-1577290 Batch5_EBC1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30083 - GI-16-024.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130735472-1877611 13B09_rep_C_Memantine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130735472-1877611 13B09_rep_C_Memantine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092735605-1878976 14E01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092735605-1878976 14E01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P21_id_MSn_positive.mzML at line 21
index 707 is out of bounds for axis 0 with size 707
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125140643-1862823 03F05_rep_C_Gemfibrozilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125140643-1862823 03F05_rep_C_Gemfibrozilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122310968-1867353 04H01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122310968-1867353 04H01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR231_5h1a.mzML at line 689
Opening and ending tag mismatch: binary line 28708 and spectrum, line 28739, column 20 (pBpumR231_5h1a.mzML, line 28739)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223956736-1870380 01F08_rep_C_Benoxinate hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223956736-1870380 01F08_rep_C_Benoxinate hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123455497-1876122 08C10_rep_B_Azelastine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123455497-1876122 08C10_rep_B_Azelastine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122926635-1880159 15D08_rep_D_Olopatadine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122926635-1880159 15D08_rep_D_Olopatadine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153727161-1577539 Batch5_HT29_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201834860-1882102 16E06_rep_D_Phenothiazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201834860-1882102 16E06_rep_D_Phenothiazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_A12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152518586-1576942 Batch1_NCIH1299_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD6_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_62.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223759773-2227635 PAT33.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113315530-1874484 11A09_rep_B_Furazolidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113315530-1874484 11A09_rep_B_Furazolidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152433497-1576905 Batch2_NCIH2085_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L7_id_MSn_positive.mzML at line 21
index 521 is out of bounds for axis 0 with size 521
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00077435.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125847908-1877203 13A09_rep_A_Decamethonium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125847908-1877203 13A09_rep_A_Decamethonium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130743029-1877617 13F11_rep_C_Rimexolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130743029-1877617 13F11_rep_C_Rimexolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101716828-1869592 07G03_rep_C_Probenecidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101716828-1869592 07G03_rep_C_Probenecidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114318932-1874932 12G06_rep_A_Salmeterola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114318932-1874932 12G06_rep_A_Salmeterola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200946364-1877713 09B03_rep_B_Picrotoxininb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200946364-1877713 09B03_rep_B_Picrotoxininb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114059824-1874819 11G10_rep_D_Phthalylsulfathiazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114059824-1874819 11G10_rep_D_Phthalylsulfathiazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150127439-1864183 02C11_rep_B_Oxandrolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150127439-1864183 02C11_rep_B_Oxandrolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125540280-1877058 12D10_rep_D_Bacitracinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125540280-1877058 12D10_rep_D_Bacitracinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153744019-1577553 Batch6_MDAMB435S_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112724902-1922118 4_H3_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112724902-1922118 4_H3_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaF_#2_P4C11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (waaF_#2_P4C11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081040.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_MEDIA-BLANK_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153254582-1577315 Batch4_NCIH2286_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100217553-1868875 06E06_rep_D_Cyclobenzaprine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100217553-1868875 06E06_rep_D_Cyclobenzaprine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/blank_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/282.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210115_AD_42.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100318706-1868923 06G08_rep_D_Rifapentinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100318706-1868923 06G08_rep_D_Rifapentinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/862.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151416030-1576404 Batch7_SUM149PT_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152807751-1577083 Batch3_SKLU1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/438.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1149.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/982.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/210-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_64.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike1_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_C3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150612394-1924494 1_D2_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150612394-1924494 1_D2_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201216_LKM_Silica_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153717894-1868740 06E06_rep_C_Cyclobenzaprine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153717894-1868740 06E06_rep_C_Cyclobenzaprine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092458618-1878854 14A07_rep_B_Repaglinidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092458618-1878854 14A07_rep_B_Repaglinidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Methylobacterium_LYH001B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_16092759_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114212678-1874878 11F04_rep_D_Liothyroninea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114212678-1874878 11F04_rep_D_Liothyroninea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113904277-1922686 3_B4_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113904277-1922686 3_B4_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B8_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fepB_P3F10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (fepB_P3F10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_04_250_prot_06_IMS_14Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153327750-1577342 Batch4_CAKI1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201114220-1877777 09F09_rep_B_Tetrahydrozoline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201114220-1877777 09F09_rep_B_Tetrahydrozoline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113613796-1874589 11C06_rep_C_Trichlormethiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113613796-1874589 11C06_rep_C_Trichlormethiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_C9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113014042-1922229 1_H10_IZH2_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113014042-1922229 1_H10_IZH2_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201458077-1881940 16A05_rep_C_Nevirapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201458077-1881940 16A05_rep_C_Nevirapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydcT_#2_P4A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (ydcT_#2_P4A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_A12_id_positive.mzML at line 21
index 348 is out of bounds for axis 0 with size 348
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125217805-1862853 03E03_rep_C_Tiratricol,_3,3',5-triiodothyroacetic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125217805-1862853 03E03_rep_C_Tiratricol,_3,3',5-triiodothyroacetic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hD2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hD2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/406.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaZ_P4B9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (paaZ_P4B9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_04_076_prot_34_IMS_26Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample066.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR13h3b.mzML at line 689
Opening and ending tag mismatch: isolationWindow line 148741 and binary, line 148742, column 1892 (pBpumR13h3b.mzML, line 148742)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150314019-1864745 02B05_rep_B_Azathioprineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150314019-1864745 02B05_rep_B_Azathioprineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_25.mzXML at line 689
Premature end of data in tag peaks line 20609, line 20613, column 3654 (20121114_25.mzXML, line 20613)
Error processing file: /data/datasets/server/MassIVE/MSV000085122/peak/10.mzXML at line 689
Extra content at the end of the document, line 37535, column 1 (10.mzXML, line 37535)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121943090-1879709 15E02_rep_B_Clofibrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121943090-1879709 15E02_rep_B_Clofibrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_01_leg_skin_control_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_01_leg_skin_control_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094443/ccms_peak/All Egg Mass/2A6E_MSMS.mzML at line 689
Premature end of data in tag indexedmzML line 2, line 17487, column 1 (2A6E_MSMS.mzML, line 17487)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GF1_01_16964.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E13_id_MSn_negative.mzML at line 21
index 329 is out of bounds for axis 0 with size 329
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122801913-1880092 15D03_rep_D_Mesnaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122801913-1880092 15D03_rep_D_Mesnaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_18072701_neg_Cent.mzML at line 689
AttValue: ' expected, line 125194, column 71 (Api_18072701_neg_Cent.mzML, line 125194)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_rerun_GA5_01_11586.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_57.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_57.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_22.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_22.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202600209-1878450 10D06_rep_A_Piperacillin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202600209-1878450 10D06_rep_A_Piperacillin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_125.mzXML at line 689
Premature end of data in tag peaks line 23465, line 23469, column 11843 (20121114_125.mzXML, line 23469)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112024056-1921751 2_A10_GAP1_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112024056-1921751 2_A10_GAP1_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30094 - GI-16-370.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GF12_01_16975.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD2_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130353681-1877436 13A01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130353681-1877436 13A01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/prpE_P4D8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (prpE_P4D8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113810084-1874682 11E07_rep_C_Ethynylestradiol_3-methyl_ethera.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113810084-1874682 11E07_rep_C_Ethynylestradiol_3-methyl_ethera.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_08_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_08_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col1_JX_04102015_150413133459.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122734097-1875770 08E04_rep_A_Zafirlukasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122734097-1875770 08E04_rep_A_Zafirlukasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metH_P3C12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (metH_P3C12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224006017-1870387 01B03_rep_D_Benzonatatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224006017-1870387 01B03_rep_D_Benzonatatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/275.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153403916-1868584 06G03_rep_B_Cefiximea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153403916-1868584 06G03_rep_B_Cefiximea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H13_id_MSn_negative.mzML at line 21
index 311 is out of bounds for axis 0 with size 311
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123047477-1867716 05H05_rep_B_Kanamycin_A_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123047477-1867716 05H05_rep_B_Kanamycin_A_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B15P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086486/ccms_peak/peak/sample/MSplate12_cls_b1249_F11_platePN_rep2_SALT_GEIII_0-568_1529.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (MSplate12_cls_b1249_F11_platePN_rep2_SALT_GEIII_0-568_1529.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET23.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET23.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD1_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125353556-1876977 12D06_rep_D_Lorglumide_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125353556-1876977 12D06_rep_D_Lorglumide_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_2_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_35_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_35_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124410905-1862349 03E01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124410905-1862349 03E01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_mock_d1_289_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 52664, column 1 (SysVirol_IFT001_mock_d1_289_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 52664)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_137.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/992.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153154350-1868482 06G06_rep_B_Tosufloxacin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153154350-1868482 06G06_rep_B_Tosufloxacin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysW_P4E4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (cysW_P4E4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101928433-1869699 07D07_rep_D_Lovastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101928433-1869699 07D07_rep_D_Lovastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-blank (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123015382-1875896 08A02_rep_A_Ziprasidone__Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123015382-1875896 08A02_rep_A_Ziprasidone__Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124441218-1862373 03C07_rep_A_Cloxacillin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124441218-1862373 03C07_rep_A_Cloxacillin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I20_id_MSn_positive.mzML at line 21
index 486 is out of bounds for axis 0 with size 486
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_03_dorsal_skin_control_oral_POS.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_03_dorsal_skin_control_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS302P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiF_P3F8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (thiF_P3F8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yjjG_P3F2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (yjjG_P3F2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124442552-1862374 03C07_rep_A_Cloxacillin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124442552-1862374 03C07_rep_A_Cloxacillin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2H05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240408_pluskal_enammol_5004_A1_id_MSn_positive_20240408135325.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB4G03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151157741-1576289 Batch5_NCIH446_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/UGT_Baicalein_neg_cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_F7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBmegR17_5h1a.mzML at line 689
error parsing attribute name, line 125998, column 25 (pBmegR17_5h1a.mzML, line 125998)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091800937-1878527 13B07_rep_D_Tracazolate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091800937-1878527 13B07_rep_D_Tracazolate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2A06P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112036486-1873023 10G09_rep_C_Hexylcaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112036486-1873023 10G09_rep_C_Hexylcaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STY1_50EV_RA2_01_22641.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123306994-1867828 05C09_rep_B_Chlorprothixene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123306994-1867828 05C09_rep_B_Chlorprothixene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C10_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_07_674_prot_45_IMS_27Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/FIL1_MS_RA1_01_22627.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092521284-1878872 14H03_rep_B_Procarbazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092521284-1878872 14H03_rep_B_Procarbazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wbbH_P5B3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (wbbH_P5B3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_H4_01_12183.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122606352-1880002 15A07_rep_D_Clavulanate_potassium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122606352-1880002 15A07_rep_D_Clavulanate_potassium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/quinolin-8-ol.mzXML at line 689
Premature end of data in tag peaks line 19727, line 19731, column 60906 (quinolin-8-ol.mzXML, line 19731)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_112.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009740_IBD200_E20_B8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD6_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_G4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151534592-1924974 4_H8_SNF3_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151534592-1924974 4_H8_SNF3_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_04_524_prot_13_IMS_15Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpBud3_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_A3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123130085-1867750 05G08_rep_B_Carbetapentane_citratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123130085-1867750 05G08_rep_B_Carbetapentane_citratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122326066-1879879 15E01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122326066-1879879 15E01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/175-4_Ms_25min__GE2_01_4244.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124150037-1862237 03C01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124150037-1862237 03C01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_103.mzXML at line 689
Premature end of data in tag peaks line 21612, line 21616, column 3654 (20121114_103.mzXML, line 21616)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153100100-1577223 Batch3_MIAPACA2_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114801825-1875153 12C08_rep_B_S-(+)-ibuprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114801825-1875153 12C08_rep_B_S-(+)-ibuprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114056043-1874816 11D08_rep_D_Carbenoxolone_disodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114056043-1874816 11D08_rep_D_Carbenoxolone_disodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_C2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122258578-1867343 04H02_rep_D_Ifenprodil_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122258578-1867343 04H02_rep_D_Ifenprodil_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202259676-1878308 10E06_rep_A_Ethoxyquina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202259676-1878308 10E06_rep_A_Ethoxyquina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_83.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case192_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case192_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210923_LKM_beads_timecourse_60min_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112535422-1922022 4_E2_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112535422-1922022 4_E2_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_04_liver_RESV_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_04_liver_RESV_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124854076-1862690 03H01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124854076-1862690 03H01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wcaG_P3H12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (wcaG_P3H12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125920997-1863200 04H11_rep_A_Fluphenazine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125920997-1863200 04H11_rep_A_Fluphenazine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122842801-1867621 05D04_rep_A_Moclobemideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122842801-1867621 05D04_rep_A_Moclobemideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C20_id_MSn_positive.mzML at line 21
index 398 is out of bounds for axis 0 with size 398
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_65_NOR_47.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_65_NOR_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121332612-1879429 15H09_rep_A_Sildenafilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121332612-1879429 15H09_rep_A_Sildenafilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/adeD_P3H7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (adeD_P3H7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124220652-1862261 03G11_rep_A_Phentolamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124220652-1862261 03G11_rep_A_Phentolamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GD3_01_11497.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 2-30185 - GI-16-551.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112642679-1874180 11B09_rep_A_Nadolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112642679-1874180 11B09_rep_A_Nadolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/005_Urea_Day7_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case51_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case51_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111529279-1921498 1_D10_GAP1_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111529279-1921498 1_D10_GAP1_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1208.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1208.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Pseudomonas_synxantha_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151250264-1924837 3_H10_SNF3_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151250264-1924837 3_H10_SNF3_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_A2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151206554-1924799 3_H9_SNF3_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151206554-1924799 3_H9_SNF3_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lsrB_P3H10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (lsrB_P3H10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152223066-1868045 05B11_rep_D_Domperidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152223066-1868045 05B11_rep_D_Domperidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111916111-1921693 2_A5_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111916111-1921693 2_A5_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091956571-1878619 13E10_rep_D_Pivampicillinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091956571-1878619 13E10_rep_D_Pivampicillinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hflX_P6D5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (hflX_P6D5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/clsB_P4H1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (clsB_P4H1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murE_P3A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (murE_P3A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/972.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152813669-1577088 Batch3_PANC0327_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_16092759_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/238.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlD3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlD3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125431989-1877006 12B08_rep_D_Pipemidic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125431989-1877006 12B08_rep_D_Pipemidic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224351431-1870563 01A09_rep_D_Amprolium hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224351431-1870563 01A09_rep_D_Amprolium hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ubiF_P4E8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ubiF_P4E8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151244642-1924832 3_D3_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151244642-1924832 3_D3_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H20_id_MSn_negative.mzML at line 21
index 306 is out of bounds for axis 0 with size 306
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-113_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MSB13A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine62.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine62.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hchA_P3B5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (hchA_P3B5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130023045-1877275 13B05_rep_A_Pronethalol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130023045-1877275 13B05_rep_A_Pronethalol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125643153-1863068 03H08_rep_D_Ofloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125643153-1863068 03H08_rep_D_Ofloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125635878-1877101 12H05_rep_D_Tyloxapola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125635878-1877101 12H05_rep_D_Tyloxapola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 2-30188 - GI-16-664.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GD1_01_17061.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_58_CNR_49.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_58_CNR_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_E6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_B7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_B2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/3c2hmp-3c3hmp_leuC_P5A10_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (3c2hmp-3c3hmp_leuC_P5A10_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 Column1_test_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150537565-1924464 1_A2_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150537565-1924464 1_A2_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_54.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222936993-1869908 01G07_rep_A_Minaprine dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222936993-1869908 01G07_rep_A_Minaprine dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/433.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152004395-1576692 Batch1A_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123132600-1875958 08E11_rep_B_Hydroxychloroquine_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123132600-1875958 08E11_rep_B_Hydroxychloroquine_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD6_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K21_id_negative.mzML at line 21
index 245 is out of bounds for axis 0 with size 245
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152214961-1868039 05E08_rep_D_Benfluorexb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152214961-1868039 05E08_rep_D_Benfluorexb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150549460-1864865 02H07_rep_C_Ivermectinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150549460-1864865 02H07_rep_C_Ivermectinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101954134-1869720 07C09_rep_D_Acenocoumarolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101954134-1869720 07C09_rep_D_Acenocoumarolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F18_id_MSn_negative.mzML at line 21
index 352 is out of bounds for axis 0 with size 352
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100919093-1869211 07E09_rep_A_Triflusala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100919093-1869211 07E09_rep_A_Triflusala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150310215-1924340 1_F4_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150310215-1924340 1_F4_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153648492-1868716 06H08_rep_C_Progesteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153648492-1868716 06H08_rep_C_Progesteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121611458-1867020 04D06_rep_B_Fenofibratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121611458-1867020 04D06_rep_B_Fenofibratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A6_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151253106-1576335 Batch5_MALME3M_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150943027-1865046 02E02_rep_D_Bromocryptine mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150943027-1865046 02E02_rep_D_Bromocryptine mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152212222-1576793 Batch2_NCIH441_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1C08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_120_1A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124322492-1876527 08C08_rep_D_Cilostazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124322492-1876527 08C08_rep_D_Cilostazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample177.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MIXEE_20170209_070ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/d3/ea83fe6590dd6c8b9db013c0007e12/input_file/MIXEE_20170209_070ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/006_Ammonia_Day11_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_1_B_rep_4_B-E2_1_5673.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150939099-1865043 02E05_rep_D_Tioconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150939099-1865043 02E05_rep_D_Tioconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112729466-1922122 4_G5_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112729466-1922122 4_G5_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G21_id_MSn_negative.mzML at line 21
index 363 is out of bounds for axis 0 with size 363
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/guaA_#3_P5C3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (guaA_#3_P5C3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_120_3B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153506227-1577422 Batch4_SW1573_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_04_leg_muscle_RESV_oral_POS.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_04_leg_muscle_RESV_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D16_id_MSn_negative.mzML at line 21
index 259 is out of bounds for axis 0 with size 259
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201648662-1882020 16D04_rep_C_Benidipine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201648662-1882020 16D04_rep_C_Benidipine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092012337-1878631 13A04_rep_D_Enilconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092012337-1878631 13A04_rep_D_Enilconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/934-A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_C9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_71.mzXML at line 689
Premature end of data in tag peaks line 19878, line 19882, column 15939 (20121114_71.mzXML, line 19882)
Error processing file: /data/datasets/server/MassIVE/MSV000081530/raw/blank1_pos_91_01_5567.mzML at line 689
Premature end of data in tag spectrumList line 67, line 141482, column 1 (blank1_pos_91_01_5567.mzML, line 141482)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115006541-1875254 12B05_rep_B_Butylparabena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115006541-1875254 12B05_rep_B_Butylparabena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A8_id_MSn_negative.mzML at line 21
index 224 is out of bounds for axis 0 with size 224
Error processing file: /data/datasets/server/MassIVE/MSV000079484/ccms_peak/29c.mzXML at line 689
Specification mandates value for attribute compressedL, line 3634, column 25 (29c.mzXML, line 3634)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125205469-1862843 03F08_rep_C_Mebendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125205469-1862843 03F08_rep_C_Mebendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_A7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121250077-1879398 14E02_rep_D_(S)-propranolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121250077-1879398 14E02_rep_D_(S)-propranolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_17_AC+_48.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122630696-1880021 15E04_rep_D_Aripiprazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122630696-1880021 15E04_rep_D_Aripiprazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNH189_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G17_id_MSn_positive.mzML at line 21
index 455 is out of bounds for axis 0 with size 455
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_160.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_160.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/005_Soil_10mMIntra_1_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_A2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaP_P4F10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (waaP_P4F10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121822192-1867123 04G09_rep_C_Pimozideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121822192-1867123 04G09_rep_C_Pimozideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LIM2_20EV_RA8_01_22537.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_70_NOR_50.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_70_NOR_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101639192-1869561 07G04_rep_C_Betahistine_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101639192-1869561 07G04_rep_C_Betahistine_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_58.mzXML at line 689
Premature end of data in tag peaks line 17651, line 17655, column 15939 (20121114_58.mzXML, line 17655)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150906691-1924644 2_G1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150906691-1924644 2_G1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_H8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD4_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124046371-1876401 08A02_rep_D_Ziprasidone__Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124046371-1876401 08A02_rep_D_Ziprasidone__Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/956-B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201704651-1882032 16E08_rep_C_Pregabalinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201704651-1882032 16E08_rep_C_Pregabalinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123504303-1876129 08A06_rep_B_Atropine_sulfate_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123504303-1876129 08A06_rep_B_Atropine_sulfate_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3H06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152912307-1577138 Batch3_T24_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/ObesumbacteriumHafnia_EB1K016.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H13_id.mzML at line 21
index 562 is out of bounds for axis 0 with size 562
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151134500-1865133 02E11_rep_D_Dexamethasone acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151134500-1865133 02E11_rep_D_Dexamethasone acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132927074-1733905 1pool Skin 1 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152512634-1576937 Batch1_CALU1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_male_2022_1017_Michael_neg-0012.mzML at line 689
Premature end of data in tag binary line 12265, line 12265, column 1660550 (pooled_male_2022_1017_Michael_neg-0012.mzML, line 12265)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD3_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152438743-1868148 05D07_rep_D_Adenosine_5'-monophosphate_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152438743-1868148 05D07_rep_D_Adenosine_5'-monophosphate_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091914331-1878586 13A03_rep_D_Canrenonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091914331-1878586 13A03_rep_D_Canrenonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S91.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S91.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_QC_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/388.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/Alb-PDI-liver-58.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151641047-1925029 4_A1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151641047-1925029 4_A1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145558144-1863921 02A06_rep_A_Baclofen (R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145558144-1863921 02A06_rep_A_Baclofen (R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222836213-1869862 01H02_rep_A_Todralazine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222836213-1869862 01H02_rep_A_Todralazine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124724236-1862618 03A11_rep_B_Phenelzine_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124724236-1862618 03A11_rep_B_Phenelzine_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201133160-1877791 09C09_rep_B_Acitretinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201133160-1877791 09C09_rep_B_Acitretinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091759682-1878526 13B07_rep_D_Tracazolate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091759682-1878526 13B07_rep_D_Tracazolate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike2_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083351/ccms_peak/BAs Animals one group/Desktop/.DS_Store at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/003_1016_1_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125214196-1876901 12B02_rep_C_Cortisol_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125214196-1876901 12B02_rep_C_Cortisol_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_G10_id_positive.mzML at line 21
index 376 is out of bounds for axis 0 with size 376
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_64.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1315.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1315.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N4_id.mzML at line 21
index 526 is out of bounds for axis 0 with size 526
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A1_id.mzML at line 21
index 352 is out of bounds for axis 0 with size 352
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_D9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/910.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N9_id_MSn_negative.mzML at line 21
index 316 is out of bounds for axis 0 with size 316
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2L004A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151618869-1925010 4_F3_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151618869-1925010 4_F3_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111622344-1921544 1_E7_GAP1_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111622344-1921544 1_E7_GAP1_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Bosea_LYD014.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151152941-1576285 Batch5_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151658263-1576539 Batch7_NCIH226_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007563_031718-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114936541-1875230 12C01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114936541-1875230 12C01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample105.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD1_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124105509-1876416 08E11_rep_D_Hydroxychloroquine_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124105509-1876416 08E11_rep_D_Hydroxychloroquine_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_108.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_108.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202036368-1882197 16H11_rep_D_Cefprozila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202036368-1882197 16H11_rep_D_Cefprozila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112716992-1874207 11B01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112716992-1874207 11B01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_56_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_56_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150417181346.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/blank_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152834784-1577106 Batch5_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114629506-1875081 12B10_rep_A_Adrenosteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114629506-1875081 12B10_rep_A_Adrenosteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152731887-1577053 Batch3_MDAMB157_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125351023-1876975 12E07_rep_D_Idazoxan_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125351023-1876975 12E07_rep_D_Idazoxan_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_15102101_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112316110-1921900 3_C5_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112316110-1921900 3_C5_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc5 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152301378-1576832 Batch2_NCIH2122_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG016C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/900.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007534_031618-1Thr4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/astB_P4B11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (astB_P4B11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudJ_P5D1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (nudJ_P5D1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_G8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ7_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GG12_01_16991.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrfD_P3C5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (nrfD_P3C5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D9_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 Column1_test_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STE2_40EV_RA4_01_22575.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L8 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152310049-1868081 05E05_rep_D_Metergolineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152310049-1868081 05E05_rep_D_Metergolineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/001_Nitrate_Day0_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control59_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control59_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GB5_01_16794.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_B9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007675_032118-1CRP3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_48.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/003_CRa_H9M5_M470_Pool_02_high_pos.mzXML at line 689
Premature end of data in tag peaks line 14308, line 14312, column 36334 (003_CRa_H9M5_M470_Pool_02_high_pos.mzXML, line 14312)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/253.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100902683-1869198 07C05_rep_A_Etifeninb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100902683-1869198 07C05_rep_A_Etifeninb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114203057-1922845 4_G9_STE2_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114203057-1922845 4_G9_STE2_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_A2_id_positive.mzML at line 21
index 429 is out of bounds for axis 0 with size 429
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114408656-1922957 4_C8_STE2_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114408656-1922957 4_C8_STE2_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD1_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112557120-1922041 4_F3_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112557120-1922041 4_F3_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.ros_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_QC_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125857391-1863180 04E01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125857391-1863180 04E01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080389/peak/Peak_List_Files/mLm_CC_Tmem111_E18-5_AT2_Ctl_4_P_15Sep16_Arwen_16-08-17.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike1_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/LiLi-13d.mzXML at line 689
Premature end of data in tag msRun line 5, line 1562, column 1 (LiLi-13d.mzXML, line 1562)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113815095-1874686 11C05_rep_C_Benzthiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113815095-1874686 11C05_rep_C_Benzthiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mocA_#2_P4F4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (mocA_#2_P4F4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H16_id_MSn_positive.mzML at line 21
index 677 is out of bounds for axis 0 with size 677
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/astE_#1_P5H10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (astE_#1_P5H10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121841304-1867138 04F10_rep_C_Mifepristonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121841304-1867138 04F10_rep_C_Mifepristonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_400.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_246.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_195_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ykgE_P4G3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (ykgE_P4G3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112719590-1874209 11C01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112719590-1874209 11C01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N13_id_MSn_positive.mzML at line 21
index 569 is out of bounds for axis 0 with size 569
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uidA_#1_P4A12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (uidA_#1_P4A12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113754886-1922625 3_D10_STE2_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113754886-1922625 3_D10_STE2_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122200917-1867297 04F06_rep_D_Pergolide_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122200917-1867297 04F06_rep_D_Pergolide_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_132.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_88.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_19032111_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/636.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085888/peak/peak/Pleiokomenine_A.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170125_049EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/75/7dd3e674637ff41881dc6bd42168f9/input_file/MMW4_20170125_049EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD5_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111723854-1871620 10D11_rep_B_Pipenzolate_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111723854-1871620 10D11_rep_B_Pipenzolate_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B5_id_MSn_positive.mzML at line 21
index 547 is out of bounds for axis 0 with size 547
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152847730-1577117 Batch3_ACHN_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wrbA_P3B4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (wrbA_P3B4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D12_id_MSn_positive.mzML at line 21
index 645 is out of bounds for axis 0 with size 645
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiC_#2_P4A5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (thiC_#2_P4A5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/PED2_MS_RA7_01_22528.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/guaB_#1_P4F7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (guaB_#1_P4F7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5D006.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_133_1A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122751975-1875784 08E01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122751975-1875784 08E01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM6C004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxC_P3G7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (lpxC_P3G7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J16_id_MSn_positive.mzML at line 21
index 554 is out of bounds for axis 0 with size 554
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H18_id_MSn_positive.mzML at line 21
index 499 is out of bounds for axis 0 with size 499
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152202539-1868030 05C03_rep_D_Methapyrilene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152202539-1868030 05C03_rep_D_Methapyrilene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152812970-1868313 06A01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152812970-1868313 06A01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150523472-1864845 02B08_rep_C_Disulfiramb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150523472-1864845 02B08_rep_C_Disulfiramb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OAD2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152510167-1576935 Batch2_OVCAR4_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152600997-1576977 Batch1_NCIH1395_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD6_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120947567-1879261 14G06_rep_D_Verteporfinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120947567-1879261 14G06_rep_D_Verteporfinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130057827-1877300 13H06_rep_B_Molindone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130057827-1877300 13H06_rep_B_Molindone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30136 - GI-16-444.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tqsA_P3C5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (tqsA_P3C5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151919602-1576656 Batch7_NCIH510_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121504356-1866968 04D04_rep_B_Cortisonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121504356-1866968 04D04_rep_B_Cortisonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151959302-1576688 Batch1_NCIH2073_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112617541-1874160 11F01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112617541-1874160 11F01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153344765-1868569 06C03_rep_B_Zotepineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153344765-1868569 06C03_rep_B_Zotepineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Column2_test_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ3_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222804333-1869838 01C06_rep_A_Thiamphenicolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222804333-1869838 01C06_rep_A_Thiamphenicolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_0124.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223727955-1870265 01C04_rep_C_Sulfadiazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223727955-1870265 01C04_rep_C_Sulfadiazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYA003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151042291-1865092 02D05_rep_D_Ampicillin trihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151042291-1865092 02D05_rep_D_Ampicillin trihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120938211-1879254 14A02_rep_D_Etomidatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120938211-1879254 14A02_rep_D_Etomidatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151742666-1576576 Batch3_NCIH2228_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_F3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_322_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153425649-1577389 Batch4_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151433831-1576419 Batch6_HCC1937_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/37.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152415793-1576891 Batch2_NCIH596_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dacC_P3A12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (dacC_P3A12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thrA_P5H3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (thrA_P5H3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/2.6_VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/003_Ammonia_Day9_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_H2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113239107-1922351 1_F3_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113239107-1922351 1_F3_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152729471-1577051 Batch1_HCC15_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151728389-1576564 Batch7_SKMEL2_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_11_Blood_Ma_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 87 (Mouse_11_Blood_Ma_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-1-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101240910-1869372 07G11_rep_B_Parthenolideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101240910-1869372 07G11_rep_B_Parthenolideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130335103-1877422 13C08_rep_B_Pramipexole_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130335103-1877422 13C08_rep_B_Pramipexole_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153147803-1868477 06D07_rep_B_Digitoxigeninb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153147803-1868477 06D07_rep_B_Digitoxigeninb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151849646-1576631 Batch7_M14_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224110280-1870436 01H09_rep_D_Thioridazine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224110280-1870436 01H09_rep_D_Thioridazine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093134942-1879160 14E08_rep_C_Nelarabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093134942-1879160 14E08_rep_C_Nelarabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112755675-1874238 11C06_rep_A_Trichlormethiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112755675-1874238 11C06_rep_A_Trichlormethiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_67.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_49_AC+_25.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153814449-1868785 06A07_rep_C_Delavirdineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153814449-1868785 06A07_rep_C_Delavirdineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8F12_160605111308.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/ccms_parameters/params.xml at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/936.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113511988-1874540 11G06_rep_C_Simvastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113511988-1874540 11G06_rep_C_Simvastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaC_P4B2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (paaC_P4B2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201301026-1877855 09A01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201301026-1877855 09A01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1035.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152104064-1576739 Batch1_HCC38_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124537967-1862417 03G04_rep_B_Xylometazoline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124537967-1862417 03G04_rep_B_Xylometazoline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153100100-1577223 Batch3_MIAPACA2_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fepB_P3F10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (fepB_P3F10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121316368-1879417 15A06_rep_A_Fleroxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121316368-1879417 15A06_rep_A_Fleroxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/369.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cyoB_P4C4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (cyoB_P4C4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/manZ_#1_P4H6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (manZ_#1_P4H6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165833931-2227540 PAT48.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190114_ES_H3K_batch13_repC_193.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD5_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc3 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/582.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200647048-1881575 16E05_rep_A_Benzoxiquinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200647048-1881575 16E05_rep_A_Benzoxiquinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122152158-1867290 04F01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122152158-1867290 04F01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101813599-1869639 07D05_rep_D_Pyrazinamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101813599-1869639 07D05_rep_D_Pyrazinamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114023779-1874790 11C06_rep_D_Trichlormethiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114023779-1874790 11C06_rep_D_Trichlormethiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/910.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/blank_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yjhG_P3G3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (yjhG_P3G3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125649186-1863073 03D11_rep_D_Camptothecine_(S,+)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125649186-1863073 03D11_rep_D_Camptothecine_(S,+)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170209_059ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/20/259d1837b35115fef533c821deeb64/input_file/MMW4_20170209_059ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/661.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153541706-1577451 Batch4_DU145_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111732230-1921604 1_E11_GAP1_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111732230-1921604 1_E11_GAP1_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111613287-1921536 1_C8_GAP1_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111613287-1921536 1_C8_GAP1_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_A7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091919539-1878590 13B08_rep_D_Zardaverinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091919539-1878590 13B08_rep_D_Zardaverinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101206177-1869344 07E08_rep_B_Tenoxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101206177-1869344 07E08_rep_B_Tenoxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sgbH_P3C6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (sgbH_P3C6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_A3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170207_049EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/37/960e3842bb9d9b299ba77df49110f5/input_file/SH9_20170207_049EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_18.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_18.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123838412-1876299 08H08_rep_C_Levetiracetamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123838412-1876299 08H08_rep_C_Levetiracetamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_2_B_rep_4_B-B6_1_5648.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/367.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124907603-1876762 12E08_rep_C_Quinapril_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124907603-1876762 12E08_rep_C_Quinapril_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151816127-1576603 Batch3_PANC1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101019670-1869259 07C01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101019670-1869259 07C01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E4_id_MSn_negative.mzML at line 21
index 292 is out of bounds for axis 0 with size 292
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153418239-1577383 Batch4_MDAMB435S_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G19_id_MSn_positive.mzML at line 21
index 678 is out of bounds for axis 0 with size 678
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_C2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145956218-1864113 02G08_rep_B_Nicergolinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145956218-1864113 02G08_rep_B_Nicergolinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152504126-1576930 Batch1_CALU6_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151233145-1924822 3_A10_SNF3_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151233145-1924822 3_A10_SNF3_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/actP_#2_P4C10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (actP_#2_P4C10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201358467-1877897 09E01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201358467-1877897 09E01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR231_5h2a.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100628290-1869074 07D03_rep_A_Iohexolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100628290-1869074 07D03_rep_A_Iohexolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153720483-1868742 06F03_rep_C_Stanozolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153720483-1868742 06F03_rep_C_Stanozolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122010340-1867208 04A02_rep_C_Mexiletine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122010340-1867208 04A02_rep_C_Mexiletine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_103b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_042ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/88/0b524d2322dd992863c4c38aa393d3/input_file/QC_20170209_042ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nadB_#1_P5E4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (nadB_#1_P5E4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_H9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D8_id_MSn_positive.mzML at line 21
index 617 is out of bounds for axis 0 with size 617
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_A7_id_positive.mzML at line 21
index 325 is out of bounds for axis 0 with size 325
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153826783-1577589 Batch6_DU4475_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0023_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0023_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/20221212_carryover_test_noISTD_PLASMA_sample01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/DEX-plasma-S10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/205-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153031868-1577202 Batch3_MIAPACA2_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_A8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113241077-1874456 11C07_rep_B_Oxalamine_citrate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113241077-1874456 11C07_rep_B_Oxalamine_citrate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202041471-1882201 16A02_rep_D_Nelfinavir_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202041471-1882201 16A02_rep_D_Nelfinavir_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152427307-1576900 Batch1_NCIH1437_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F15_id_MSn_negative.mzML at line 21
index 325 is out of bounds for axis 0 with size 325
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150051546-1864155 02H02_rep_B_Erythromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150051546-1864155 02H02_rep_B_Erythromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A9Bs10mm_black_P1-A-10_01_23061.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike1_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B10_id_MSn_negative.mzML at line 21
index 256 is out of bounds for axis 0 with size 256
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O4_id_MSn_negative.mzML at line 21
index 311 is out of bounds for axis 0 with size 311
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151550695-1576482 Batch7_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person2_RBC_POS.mzXML at line 689
attributes construct error, line 38, column 71 (Person2_RBC_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metC_P3G9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (metC_P3G9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_0123_190124012723.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151706788-1576546 Batch4_HPAC_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM5F002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1H004A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_mock_d1_290_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 30965, column 1 (SysVirol_IFT001_mock_d1_290_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 30965)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_cell lysate/mzML/Vector_baicalein_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C22_id.mzML at line 21
index 564 is out of bounds for axis 0 with size 564
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B11_id_MSn_negative.mzML at line 21
index 299 is out of bounds for axis 0 with size 299
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/386.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152635404-1868238 06G05_rep_A_Quetiapine_hemifumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152635404-1868238 06G05_rep_A_Quetiapine_hemifumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145715328-1863983 02H11_rep_A_Gentamicine sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145715328-1863983 02H11_rep_A_Gentamicine sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180824_ES_H3K_batch10_repC_144.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115012544-1875259 12E01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115012544-1875259 12E01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145903170-1864070 02A01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145903170-1864070 02A01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_34_NOR_50.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_34_NOR_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210313_LKM_mb_overnight_urea_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130246239-1877384 13B06_rep_B_Naftopidil_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130246239-1877384 13B06_rep_B_Naftopidil_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1016.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lptE_P3B8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (lptE_P3B8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_120_3C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1368.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1368.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114416397-1922964 4_E2_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114416397-1922964 4_E2_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A20_id.mzML at line 21
index 587 is out of bounds for axis 0 with size 587
Error processing file: /data/datasets/server/MassIVE/MSV000085103/ccms_peak/mzML/JB-182_100um_ph2.mzML at line 689
Premature end of data in tag binary line 147349, line 147349, column 18824 (JB-182_100um_ph2.mzML, line 147349)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H7_id_MSn_positive.mzML at line 21
index 630 is out of bounds for axis 0 with size 630
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/296.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153923641-1577637 Batch6_NCIH146_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw3_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080030/ccms_peak/Forensic_study_80_volunteers/Forensic_Objects_mzXML/Forensic_Objects_plate_G_mzXML/.DS_Store at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/32-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200745764-1881618 16G04_rep_A_Tolterodine_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200745764-1881618 16G04_rep_A_Tolterodine_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G19_id_MSn_negative.mzML at line 21
index 332 is out of bounds for axis 0 with size 332
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_18_Blood_CMC_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 88 (Mouse_18_Blood_CMC_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/2p4c2me_ispF_P3E11_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024902 (2p4c2me_ispF_P3E11_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_H7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150545662-1864862 02C02_rep_C_R(-) Apomorphine hydrochloride hemihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150545662-1864862 02C02_rep_C_R(-) Apomorphine hydrochloride hemihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100335296-1868936 06A08_rep_D_Adamantamine_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100335296-1868936 06A08_rep_D_Adamantamine_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S01_dilute_190131233519.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201049339-1877759 09C05_rep_B_Loratadineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201049339-1877759 09C05_rep_B_Loratadineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pdxY_P5A12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (pdxY_P5A12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125548485-1863024 03E10_rep_D_Metoclopramide_monohydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125548485-1863024 03E10_rep_D_Metoclopramide_monohydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample130_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_81.mzXML at line 689
Premature end of data in tag peaks line 27494, line 27498, column 3653 (20121114_81.mzXML, line 27498)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A5_id.mzML at line 21
index 772 is out of bounds for axis 0 with size 772
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113509867-1922483 2_E4_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113509867-1922483 2_E4_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case82_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case82_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mdaB_P5C3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (mdaB_P5C3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/003_Ammonia_Day9_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_G7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078891/ccms_peak/massive_cyanos/EH_2014_05_19_WT+N_secreted.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123523981-1876145 08A04_rep_B_Pyridostigmine_iodideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123523981-1876145 08A04_rep_B_Pyridostigmine_iodideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150650905-1864912 02D03_rep_C_Metolazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150650905-1864912 02D03_rep_C_Metolazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Blank_pesticide_170405030939.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101606576-1869534 07F06_rep_C_Methoxamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101606576-1869534 07F06_rep_C_Methoxamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample154_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/883.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample164_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_65_CNR_49.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_65_CNR_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_G2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_G2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190344392-1889805 Wb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150929800-1924664 2_H9_RGT2_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150929800-1924664 2_H9_RGT2_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130000170-1877259 13D02_rep_A_Gliquidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130000170-1877259 13D02_rep_A_Gliquidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114055954-1922785 4_D3_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114055954-1922785 4_D3_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/417.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150311440-1924341 1_D9_RGT2_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150311440-1924341 1_D9_RGT2_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152418298-1576893 Batch2_NCIH520_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAJ14.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112022646-1873012 10B02_rep_C_Sulfaquinoxaline_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112022646-1873012 10B02_rep_C_Sulfaquinoxaline_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091079/updates/2023-01-19_fatema_saber23_9aa5df91/raw/NEG_22.mzML at line 255
Error -3 while decompressing data: invalid stored block lengths
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hA2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hA2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Apigenin_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/9_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201848766-1882113 16A07_rep_D_Amlexanoxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201848766-1882113 16A07_rep_D_Amlexanoxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/442.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122523936-1867461 05H06_rep_A_Amikacin_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122523936-1867461 05H06_rep_A_Amikacin_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ggt_#1_P5C12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (ggt_#1_P5C12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152124165-1576755 Batch1_HCC1937_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_C2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222909723-1869887 01D10_rep_A_Diflunisala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222909723-1869887 01D10_rep_A_Diflunisala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6B12_160602234437.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087069/raw/BRB Liquid Convert pos/BBR_R140000_N70_I10e6_E30_pos_06292020.mzML at line 689
Premature end of data in tag binary line 77596, line 77596, column 250758 (BBR_R140000_N70_I10e6_E30_pos_06292020.mzML, line 77596)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uxaA_P4G11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (uxaA_P4G11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_E5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD2_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yahK_P4G2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (yahK_P4G2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153534532-1577445 Batch4_SW1573_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123412499-1876087 08B07_rep_B_Acetopromazine_maleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123412499-1876087 08B07_rep_B_Acetopromazine_maleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNR698_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ulaE_#1_P4H6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ulaE_#1_P4H6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201306293-1877859 09D10_rep_B_Ibandronate_sodium_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201306293-1877859 09D10_rep_B_Ibandronate_sodium_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_RBC_1h_NEG.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer2_RBC_1h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122636996-1880026 15C02_rep_D_Famciclovira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122636996-1880026 15C02_rep_D_Famciclovira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/QC_mix.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate25/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L9_id_MSn_positive.mzML at line 21
index 736 is out of bounds for axis 0 with size 736
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample133_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123048081-1875922 08B01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123048081-1875922 08B01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/887.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_116.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R27_5h1a.mzML at line 689
error parsing attribute name, line 212847, column 52 (pBlichMO17R27_5h1a.mzML, line 212847)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151840322-1867868 05E06_rep_C_Brinzolamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151840322-1867868 05E06_rep_C_Brinzolamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cbdA_P3C6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (cbdA_P3C6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113447751-1874521 11B03_rep_C_Cromolyn_disodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113447751-1874521 11B03_rep_C_Cromolyn_disodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151329175-1576365 Batch7_HOP62_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093129945-1879156 14B01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093129945-1879156 14B01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153230203-1577295 Batch5_SW620_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152406856-1576884 Batch2_NCIH2291_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dppC_P3C3_neg.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223628956-1870220 01C01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223628956-1870220 01C01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113749925-1874666 11C07_rep_C_Oxalamine_citrate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113749925-1874666 11C07_rep_C_Oxalamine_citrate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/199-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1425.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1425.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101057028-1869289 07G03_rep_B_Probenecida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101057028-1869289 07G03_rep_B_Probenecida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152939527-1577161 Batch3_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_C8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152637977-1868240 06C02_rep_A_Suloctidila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152637977-1868240 06C02_rep_A_Suloctidila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_58.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_58.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD1_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2L003A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D20_id_MSn_negative.mzML at line 21
index 314 is out of bounds for axis 0 with size 314
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125608437-1863040 03A05_rep_D_Ornidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125608437-1863040 03A05_rep_D_Ornidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121112653-1879325 14H08_rep_D_Azaperoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121112653-1879325 14H08_rep_D_Azaperoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/blank_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_cc2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample100.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_117a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202225239-1878281 10F10_rep_A_Zomepirac_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202225239-1878281 10F10_rep_A_Zomepirac_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J7_id_negative.mzML at line 21
index 265 is out of bounds for axis 0 with size 265
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-141_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122905019-1880142 15A05_rep_D_Sulbactama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122905019-1880142 15A05_rep_D_Sulbactama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D2_postFOS_2_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124132780-1876438 08A08_rep_D_Itraconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124132780-1876438 08A08_rep_D_Itraconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083989/updates/2019-07-18_Tongchai_9989dd7a/raw/180323_PMA_TS_BC_S_02_A_neg.mzXML at line 689
Opening and ending tag mismatch: peaks line 63569 and scan, line 63581, column 12 (180323_PMA_TS_BC_S_02_A_neg.mzXML, line 63581)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200819877-1881643 16D09_rep_A_Diatrizoic_acid_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200819877-1881643 16D09_rep_A_Diatrizoic_acid_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114411947-1922960 4_D2_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114411947-1922960 4_D2_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_ehigh (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153820881-1577584 Batch6_K562_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086335/ccms_peak/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Diaporthe CarGL-2A/M2A9.mzML at line 689
Extra content at the end of the document, line 47298, column 1 (M2A9.mzML, line 47298)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_E6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153922463-1577636 Batch6_NCIH146_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F12_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223947236-1870373 01B02_rep_C_Meticranea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223947236-1870373 01B02_rep_C_Meticranea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH7.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K13_id_MSn_positive.mzML at line 21
index 492 is out of bounds for axis 0 with size 492
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_C8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mntP_P3A8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (mntP_P3A8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152911111-1577137 Batch5_NCIH3255_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112727220-1874215 11D03_rep_A_Cefoxitin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112727220-1874215 11D03_rep_A_Cefoxitin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113147986-1874414 11E02_rep_B_Olanzapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113147986-1874414 11E02_rep_B_Olanzapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125933180-1877238 13F07_rep_A_Moxonidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125933180-1877238 13F07_rep_A_Moxonidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD4_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_55.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101414745-1869447 07C08_rep_C_Sibutramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101414745-1869447 07C08_rep_C_Sibutramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B2_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3G01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123237321-1867804 05F07_rep_B_Clofaziminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123237321-1867804 05F07_rep_B_Clofaziminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_E5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121446162-1879485 15C10_rep_A_Vardenafilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121446162-1879485 15C10_rep_A_Vardenafilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152827815-1577100 Batch5_HOP92_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223610460-1870206 01G05_rep_C_Chlorpromazine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223610460-1870206 01G05_rep_C_Chlorpromazine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_sample01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/CORN_AD3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnE_P5B6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (phnE_P5B6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purA_P3D4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (purA_P3D4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150256195-1924328 1_C1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150256195-1924328 1_C1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_397.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD3_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007569_031718-5CRP2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150417194705.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000096471/ccms_peak/Raw/T2-MP-R3.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000096471/ccms_peak/Raw/T2-MP-R3.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153129983-1577247 Batch4_MDAMB435S_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_HT_106_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121244754-1879394 14H05_rep_D_Saquinavir_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121244754-1879394 14H05_rep_D_Saquinavir_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122453333-1867436 04H09_rep_D_Quinacrine_dihydrochloride_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122453333-1867436 04H09_rep_D_Quinacrine_dihydrochloride_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/455.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/459.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_blank_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/pep_ptsH_P3G2_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024912 (pep_ptsH_P3G2_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kefC_P4C1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (kefC_P4C1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151804772-1867840 05D04_rep_C_Moclobemidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151804772-1867840 05D04_rep_C_Moclobemidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150357376-1864778 02E01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150357376-1864778 02E01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201438219-1881925 16C06_rep_C_Nateglinidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201438219-1881925 16C06_rep_C_Nateglinidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112944831-1874323 11H03_rep_A_Iopromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112944831-1874323 11H03_rep_A_Iopromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-063.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-063.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/971.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152136728-1576765 Batch2_NCIH358_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG009A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083351/ccms_peak/BAs Animals one group/Desktop/WirelessDiagnostics-C02MR6WTG086-20160515121338 2/UserDiagnosticReports/.com.apple.WebKit.Networking_2016-04-22-114407_Ninas-MacBook-Air-3.crash.plist at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ldtE_P3E9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ldtE_P3E9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151150176-1924785 3_E9_SNF3_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151150176-1924785 3_E9_SNF3_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152853575-1577122 Batch3_RERFLCA1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O13_id.mzML at line 21
index 528 is out of bounds for axis 0 with size 528
Error processing file: /data/datasets/server/MassIVE/MSV000096497/peak/20201013_ProgressCurveAnalysis_PykF_set2_eff9_t6_rep1.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000096497/peak/20201013_ProgressCurveAnalysis_PykF_set2_eff9_t6_rep1.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113538281-1922507 2_D3_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113538281-1922507 2_D3_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2A09Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152602198-1576978 Batch2_BXPC3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/654.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_105.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/881.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E11_id_MSn_positive.mzML at line 21
index 399 is out of bounds for axis 0 with size 399
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/219.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121632967-1879565 15E07_rep_A_Sparfloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121632967-1879565 15E07_rep_A_Sparfloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_H6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/33.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_F6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/628.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145613259-1863933 02H05_rep_A_Josamycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145613259-1863933 02H05_rep_A_Josamycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_E4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122228582-1879835 15C05_rep_C_Carprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122228582-1879835 15C05_rep_C_Carprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD5_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.afg_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYZ01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_HT_066_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125958705-1863232 04F02_rep_A_Dantrolene_sodium_salt_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125958705-1863232 04F02_rep_A_Dantrolene_sodium_salt_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151649901-1576532 Batch7_CAL51_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_378.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122825879-1880111 15G05_rep_D_Olmesartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122825879-1880111 15G05_rep_D_Olmesartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114230990-1874893 11A08_rep_D_Chloropyramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114230990-1874893 11A08_rep_D_Chloropyramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_C3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_109a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153644107-1577503 Batch5_NCIH1792_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_rerun_B4_BB4_01_12038.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-194_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201220_LKM_1to1_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysE_P3B8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (cysE_P3B8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151224418-1576311 Batch5_HCC1187_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201445987-1877932 09H05_rep_C_Isosorbide_dinitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201445987-1877932 09H05_rep_C_Isosorbide_dinitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151211094-1576300 Batch5_NCIH1755_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_65.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121502391-1879497 15B04_rep_A_Bromhexine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121502391-1879497 15B04_rep_A_Bromhexine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153345265-1577356 Batch4_NCIH2126_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123110222-1875940 08B11_rep_A_Argatrobana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123110222-1875940 08B11_rep_A_Argatrobana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhtC_P3B7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (rhtC_P3B7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223219894-1870030 01D04_rep_B_Diprophyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223219894-1870030 01D04_rep_B_Diprophyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hcaF_P3D3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (hcaF_P3D3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201335644-1881878 16D11_rep_B_Phenprobamateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201335644-1881878 16D11_rep_B_Phenprobamateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G19_id_MSn_negative.mzML at line 21
index 307 is out of bounds for axis 0 with size 307
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223716562-1870256 01A10_rep_C_Hydrochlorothiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223716562-1870256 01A10_rep_C_Hydrochlorothiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091425/ccms_parameters/params.xml at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_23.mzXML at line 689
Premature end of data in tag peaks line 18960, line 18964, column 3654 (20121114_23.mzXML, line 18964)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153413314-1577379 Batch4_NCIH1651_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A6_id_MSn_negative.mzML at line 21
index 220 is out of bounds for axis 0 with size 220
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151010271-1865067 02B04_rep_D_Azacyclonolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151010271-1865067 02B04_rep_D_Azacyclonolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151702118-1576542 Batch7_SF295_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130324811-1877414 13G07_rep_B_Arbutinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130324811-1877414 13G07_rep_B_Arbutinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100417847-1868970 06E01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100417847-1868970 06E01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078891/ccms_peak/massive_cyanos/EH_2014_07_14_KO+N.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GB5_01_11466.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8F07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_14_Blood_CMC_control_POS.mzXML at line 689
attributes construct error, line 38, column 91 (Mouse_14_Blood_CMC_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124609707-1862559 03A05_rep_B_Ornidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124609707-1862559 03A05_rep_B_Ornidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100937127-1869225 07C02_rep_A_Vigabatrin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100937127-1869225 07C02_rep_A_Vigabatrin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112345833-1921926 3_E8_GPR1_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112345833-1921926 3_E8_GPR1_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101437274-1869465 07G05_rep_C_Tobramycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101437274-1869465 07G05_rep_C_Tobramycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I19_id.mzML at line 21
index 572 is out of bounds for axis 0 with size 572
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Streptomyce_sp_MS100128_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200859318-1881672 16G07_rep_A_Alosetron_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200859318-1881672 16G07_rep_A_Alosetron_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/6.3_4OI _VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112727191-1922120 4_A3_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112727191-1922120 4_A3_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wecD_#1_P5G2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (wecD_#1_P5G2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153217606-1577285 Batch5_OVCAR5_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_G5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090953/raw/mzML/220908_ED_Giovanni_sample_265cent.mzML at line 689
Premature end of data in tag scan line 189302, line 189311, column 6 (220908_ED_Giovanni_sample_265cent.mzML, line 189311)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_A10_id_positive.mzML at line 21
index 340 is out of bounds for axis 0 with size 340
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_08P_A10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180504_ES_batch4B_pWT_b.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152251779-1868067 05D03_rep_D_Dobutamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152251779-1868067 05D03_rep_D_Dobutamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D19_id_negative.mzML at line 21
index 243 is out of bounds for axis 0 with size 243
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101542801-1869515 07G07_rep_C_Pregnenolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101542801-1869515 07G07_rep_C_Pregnenolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222841515-1869866 01E10_rep_A_Amyleine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222841515-1869866 01E10_rep_A_Amyleine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097681/peak/amino acids/030521-b1-QC1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIAI10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150652133-1924528 2_A4_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150652133-1924528 2_A4_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GD12_01_17065.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201909917-1878128 09B02_rep_D_Glimepiridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201909917-1878128 09B02_rep_D_Glimepiridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152130630-1868005 05B06_rep_C_Zaprinastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152130630-1868005 05B06_rep_C_Zaprinastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F15_id_MSn_negative.mzML at line 21
index 303 is out of bounds for axis 0 with size 303
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130438295-1877471 13E11_rep_B_Lodoxamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130438295-1877471 13E11_rep_B_Lodoxamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_H6_01_12185.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C1_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/373.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-084_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_CABIN_sample04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113113569-1922277 1_B9_IZH2_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113113569-1922277 1_B9_IZH2_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152701871-1577028 Batch2_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/blank_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123817329-1876282 08E09_rep_C_Oxibendazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123817329-1876282 08E09_rep_C_Oxibendazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G6_id_MSn_negative.mzML at line 21
index 296 is out of bounds for axis 0 with size 296
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_115.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A17_id_MSn_negative.mzML at line 21
index 254 is out of bounds for axis 0 with size 254
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yjjX_#1_P5B3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (yjjX_#1_P5B3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_129_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201310652-1881859 16A04_rep_B_Trimebutinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201310652-1881859 16A04_rep_B_Trimebutinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00072709.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122742651-1867573 05F07_rep_A_Clofazimineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122742651-1867573 05F07_rep_A_Clofazimineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNB091_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_D7_01_12207.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122635744-1880025 15E03_rep_D_Cyclophosphamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122635744-1880025 15E03_rep_D_Cyclophosphamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125133246-1876870 12A01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125133246-1876870 12A01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/artQ_#2_P5B11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (artQ_#2_P5B11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080705/ccms_peak/RAW/12h_lysC_BA-re.mzML at line 648
Multiple activations for a single precursor is not yet implemented. 
                                                         File: input_file/12h_lysC_BA-re.mzML 
                                                         Scan: 659
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152432293-1576904 Batch2_NCIH2085_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiG_#2_P5A8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (thiG_#2_P5A8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_C6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074331.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114027280-1922760 3_F1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114027280-1922760 3_F1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dppB_P3F6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (dppB_P3F6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G9_id_MSn_negative.mzML at line 21
index 365 is out of bounds for axis 0 with size 365
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152930045-1577153 Batch5_NCIH2347_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/658.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample023_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_1_P_rep_4_B-C4_1_5843.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092046159-1878657 14F02_rep_A_Spaglumic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092046159-1878657 14F02_rep_A_Spaglumic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case201_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case201_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_62.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_085a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132928294-1733906 1pool Skin 1 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yqjH_#1_P4H3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (yqjH_#1_P4H3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153326492-1577341 Batch4_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B04Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E21_id_MSn_negative.mzML at line 21
index 352 is out of bounds for axis 0 with size 352
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD2_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_2_P_rep_2_B-B5_1_5647.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folC_P3H6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (folC_P3H6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/106-3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_0124.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_C9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD074_P1-A-3_01_2386.mzML at line 689
Opening and ending tag mismatch: binary line 105562 and scanWindow, line 105563, column 30 (CD074_P1-A-3_01_2386.mzML, line 105563)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_007ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ac/ce0bdf0fc9fc1bb700cd293a369e41/input_file/QC_20170209_007ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control229_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control229_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082793/ccms_peak/raw/MTBLS227/37382-A06-1.mzXML at line 689
Premature end of data in tag peaks line 623, line 627, column 143022 (37382-A06-1.mzXML, line 627)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F7_id_MSn_positive.mzML at line 21
index 441 is out of bounds for axis 0 with size 441
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/019_CRa_H9M5_M470_C01_K3_high_pos.mzXML at line 689
Premature end of data in tag peaks line 18526, line 18530, column 52727 (019_CRa_H9M5_M470_C01_K3_high_pos.mzXML, line 18530)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223049789-1869962 01F11_rep_A_Tolazoline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223049789-1869962 01F11_rep_A_Tolazoline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122728983-1875766 08F05_rep_A_Carbidopaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122728983-1875766 08F05_rep_A_Carbidopaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_225.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122124267-1879786 15G08_rep_B_Docetaxela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122124267-1879786 15G08_rep_B_Docetaxela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_133.mzXML at line 689
Premature end of data in tag msRun line 5, line 23012, column 1 (20121114_133.mzXML, line 23012)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153044503-1577211 Batch3_SKMEL5_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/682.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111727461-1921600 1_D1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111727461-1921600 1_D1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_CABIN_sample08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/152-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P4_id_negative.mzML at line 21
index 275 is out of bounds for axis 0 with size 275
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223320734-1870076 01D11_rep_B_Niclosamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223320734-1870076 01D11_rep_B_Niclosamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112757509-1922147 4_G3_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112757509-1922147 4_G3_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/446.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_109.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122838884-1867618 05B11_rep_A_Domperidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122838884-1867618 05B11_rep_A_Domperidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124204004-1876463 08F02_rep_D_Loracarbefb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124204004-1876463 08F02_rep_D_Loracarbefb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223914557-1870348 01A11_rep_C_Sulfaguanidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223914557-1870348 01A11_rep_C_Sulfaguanidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_blank_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7C02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gatB_#1_P5E1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (gatB_#1_P5E1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_9_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180420_ES_H3K_batch6_repC_93.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123934364-1876344 08A05_rep_D_Pentobarbitala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123934364-1876344 08A05_rep_D_Pentobarbitala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_G12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113117088-1922280 1_A3_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113117088-1922280 1_A3_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case156_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case156_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_036ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/f6/cdc7c2d7f23c5f63f35bf6fad86e1a/input_file/QC_20170127_036ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_0123_190124000420.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152709476-1868264 06G02_rep_A_Tropisetron_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152709476-1868264 06G02_rep_A_Tropisetron_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-4-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H11_id_MSn_positive.mzML at line 21
index 429 is out of bounds for axis 0 with size 429
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/001_Nitrate_Day4_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D2_id_negative.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009640_IBD200_E18_B6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4A06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D1_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N21_id_MSn_positive.mzML at line 21
index 528 is out of bounds for axis 0 with size 528
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170125_009EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/64/e16776df60d2d2487f6dd91368142e/input_file/QC_20170125_009EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122850131-1880130 15A04_rep_D_Doxycycline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122850131-1880130 15A04_rep_D_Doxycycline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person22_blood_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 83 (Person22_blood_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123338133-1876059 08D07_rep_B_Fomepizoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123338133-1876059 08D07_rep_B_Fomepizoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124527671-1876627 09D07_rep_A_Beta-Escinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124527671-1876627 09D07_rep_A_Beta-Escinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_087b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_E11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_D6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123052990-1875926 08H07_rep_A_Penciclovira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123052990-1875926 08H07_rep_A_Penciclovira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151804325-1576593 Batch4_HS578T_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8B06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113855517-1874719 11G07_rep_D_Azacytidine-5b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113855517-1874719 11G07_rep_D_Azacytidine-5b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200959850-1877723 09E10_rep_B_Butylscopolammonium_(n-)_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200959850-1877723 09E10_rep_B_Butylscopolammonium_(n-)_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD1_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112045453-1873030 10H07_rep_C_Lithocholic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112045453-1873030 10H07_rep_C_Lithocholic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150400096-1864780 02B04_rep_C_Azacyclonola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150400096-1864780 02B04_rep_C_Azacyclonola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151308782-1924853 3_C10_SNF3_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151308782-1924853 3_C10_SNF3_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094756/peak/02_TO_mLiver_Pel_HILIC_pos.mzML at line 689
Premature end of data in tag binary line 2670510, line 2670510, column 3247 (02_TO_mLiver_Pel_HILIC_pos.mzML, line 2670510)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113243735-1922355 1_F10_IZH2_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113243735-1922355 1_F10_IZH2_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165812078-2227520 PAT46.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153017456-1868409 06E11_rep_A_Dicloxacillin_sodium_salt_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153017456-1868409 06E11_rep_A_Dicloxacillin_sodium_salt_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/607.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152038952-1867963 05E01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152038952-1867963 05E01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101223616-1869358 07F04_rep_B_Phenacetinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101223616-1869358 07F04_rep_B_Phenacetinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoH_P3H7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (nuoH_P3H7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151236654-1924825 3_F11_SNF3_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151236654-1924825 3_F11_SNF3_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case77_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case77_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113059591-1922265 1_B4_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113059591-1922265 1_B4_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ3_7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_A2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/630.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBmegR231_5h3b.mzML at line 689
Specification mandates value for attribute acce, line 99071, column 39 (pBmegR231_5h3b.mzML, line 99071)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/blank_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165814337-2227522 PAT46.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114705590-1875109 12B02_rep_B_Cortisol_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114705590-1875109 12B02_rep_B_Cortisol_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202202201-1882264 16G05_rep_D_Lomerizine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202202201-1882264 16G05_rep_D_Lomerizine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S44.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S44.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092056920-1878665 14F10_rep_A_Nialamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092056920-1878665 14F10_rep_A_Nialamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180504_ES_H3K_batch4_repB_51.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L11_id_negative.mzML at line 21
index 256 is out of bounds for axis 0 with size 256
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysK_P4D8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (cysK_P4D8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dppB_P3F6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (dppB_P3F6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1134.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample182.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124711367-1876707 09E03_rep_A_Secnidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124711367-1876707 09E03_rep_A_Secnidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR331_5h3a.mzML at line 689
Opening and ending tag mismatch: binary line 212884 and binaryDataArray, line 212888, column 31 (pBlateR331_5h3a.mzML, line 212888)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125727618-1877141 13D07_rep_A_Prothionamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125727618-1877141 13D07_rep_A_Prothionamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4B09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G15_id_MSn_positive.mzML at line 21
index 397 is out of bounds for axis 0 with size 397
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152022123-1576706 Batch1_BT549_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009545_IBD200_E12_A3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125511084-1877036 12F01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125511084-1877036 12F01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-037.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-037.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_82.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ldcC_P4E12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (ldcC_P4E12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N14_id_MSn_positive.mzML at line 21
index 423 is out of bounds for axis 0 with size 423
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151756906-1576587 Batch3_J82_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151749749-1576581 Batch3_PANC1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-073.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-073.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/589.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093109711-1879140 14A08_rep_C_Piretanidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093109711-1879140 14A08_rep_C_Piretanidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_MICU_260_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125700117-1863082 03A11_rep_D_Phenelzine_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125700117-1863082 03A11_rep_D_Phenelzine_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165818825-2227526 PAT43.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N20_id_MSn_negative.mzML at line 21
index 293 is out of bounds for axis 0 with size 293
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2E07P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112218873-1921850 3_A4_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112218873-1921850 3_A4_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201948872-1878158 09B03_rep_D_Picrotoxinina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201948872-1878158 09B03_rep_D_Picrotoxinina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD1_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample041_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122920704-1867651 05E04_rep_B_Colchicineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122920704-1867651 05E04_rep_B_Colchicineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122812632-1875800 08F04_rep_A_Diosmina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122812632-1875800 08F04_rep_A_Diosmina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_111.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121559904-1867011 04F11_rep_B_Diperodon_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121559904-1867011 04F11_rep_B_Diperodon_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metL_P4H1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (metL_P4H1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170207_026EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/73/ef6c8d65ccf5b0a3cc62eaf4bf1b82/input_file/SH10_20170207_026EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151453957-1576436 Batch6_OVCAR3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/596.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A1_id_negative_20230130214353.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151143344-1865140 02B01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151143344-1865140 02B01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152334973-1868100 05H02_rep_D_Terbutaline_hemisulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152334973-1868100 05H02_rep_D_Terbutaline_hemisulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_10_B-A2_1_5675.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/609.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125720140-1877135 13C08_rep_A_Pramipexole_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125720140-1877135 13C08_rep_A_Pramipexole_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD6_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person15_blood_youth_POS.mzXML at line 689
attributes construct error, line 41, column 100 (Person15_blood_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100214972-1868873 06A11_rep_D_Amphotericin_Ba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100214972-1868873 06A11_rep_D_Amphotericin_Ba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/56-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_22_NOR_52.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_22_NOR_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125215527-1876902 12B02_rep_C_Cortisol_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125215527-1876902 12B02_rep_C_Cortisol_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200817203-1881641 16A06_rep_A_Doxapram_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200817203-1881641 16A06_rep_A_Doxapram_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/712.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2A02P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Serratia_MADAA01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ygeX_#2_P5D6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (ygeX_#2_P5D6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyi_P3B3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (hyi_P3B3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES336.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_SERUM_V8_SSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J17_id_negative.mzML at line 21
index 257 is out of bounds for axis 0 with size 257
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_182.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/311.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_361.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113553563-1874573 11G09_rep_C_Acetaminophenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113553563-1874573 11G09_rep_C_Acetaminophenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frdC_P4G2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (frdC_P4G2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G03Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150851384-1924631 2_B1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150851384-1924631 2_B1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112813086-1922161 4_B2_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112813086-1922161 4_B2_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_113.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_113.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150320058-1924348 1_G9_RGT2_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150320058-1924348 1_G9_RGT2_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/355.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152606982-1576982 Batch2_OVCAR4_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/796.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151945906-1867920 05D10_rep_C_Dextromethorphan_hydrobromide_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151945906-1867920 05D10_rep_C_Dextromethorphan_hydrobromide_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S26.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S26.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111701045-1871602 10E09_rep_B_Vidarabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111701045-1871602 10E09_rep_B_Vidarabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007517_031618-0.01Thr6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201713858-1882039 16G08_rep_C_Risedronic_acid_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201713858-1882039 16G08_rep_C_Risedronic_acid_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B12_id.mzML at line 21
index 582 is out of bounds for axis 0 with size 582
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_59.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151607065-1925000 4_D3_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151607065-1925000 4_D3_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8C14.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201623228-1882001 16A06_rep_C_Doxapram_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201623228-1882001 16A06_rep_C_Doxapram_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114348299-1874956 12B01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114348299-1874956 12B01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET29.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET29.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/249.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/17_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dadX_P4C9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (dadX_P4C9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person2_RBC_NEG.mzXML at line 689
attributes construct error, line 38, column 71 (Person2_RBC_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person14_RBC_youth_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Person14_RBC_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_48.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case42_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case42_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101846391-1869665 07D06_rep_D_Trimethadionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101846391-1869665 07D06_rep_D_Trimethadionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153810222-1577575 Batch7_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151539889-1576473 Batch7_HARA_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_H9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample080.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124423399-1876577 09B07_rep_A_Lanatoside_Cb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124423399-1876577 09B07_rep_A_Lanatoside_Cb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152426805-1868139 05E11_rep_D_Benzbromaroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152426805-1868139 05E11_rep_D_Benzbromaroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_C7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170125_064EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/61/7130b47fe22dbde7115290f89a2cd1/input_file/MMW5_20170125_064EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/313.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153257878-1868532 06A02_rep_B_Testosterone_propionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153257878-1868532 06A02_rep_B_Testosterone_propionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152216110-1576796 Batch2_NCIH2170_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121842743-1879664 15G06_rep_B_Racepinephrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121842743-1879664 15G06_rep_B_Racepinephrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample229.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007668_032118-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OD4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124522067-1876623 09D04_rep_A_Opipramol_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124522067-1876623 09D04_rep_A_Opipramol_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125204175-1862842 03F08_rep_C_Mebendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125204175-1862842 03F08_rep_C_Mebendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydiB_P6G3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ydiB_P6G3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114724928-1875124 12B08_rep_B_Pipemidic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114724928-1875124 12B08_rep_B_Pipemidic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_90.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122114569-1879779 15B11_rep_B_Diclazurilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122114569-1879779 15B11_rep_B_Diclazurilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fruA_P3A8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (fruA_P3A8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B15_id_negative.mzML at line 21
index 280 is out of bounds for axis 0 with size 280
Error processing file: /data/datasets/server/MassIVE/MSV000092317/peak/R vs S PA_mzML neg files/25.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000092317/peak/R vs S PA_mzML neg files/25.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-069.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-069.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fldB_#2_P5E12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (fldB_#2_P5E12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_H1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GA8_01_17141.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_blank_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190127_ES_H3K_batch15_repA_217.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122928558-1875860 08E06_rep_A_Carbadoxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122928558-1875860 08E06_rep_A_Carbadoxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_131_2B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNQ865_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG010A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_11P_A6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075251.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P9_id_MSn_negative.mzML at line 21
index 321 is out of bounds for axis 0 with size 321
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0041_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122741482-1867572 05F07_rep_A_Clofaziminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122741482-1867572 05F07_rep_A_Clofaziminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152423441-1576897 Batch2_T47D_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172637360-1889898 Wa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007572_031718-5CRP3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std b 003a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100401680-1868957 06B09_rep_D_Biotina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100401680-1868957 06B09_rep_D_Biotina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/469-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112222460-1921853 3_C4_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112222460-1921853 3_C4_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_B6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092744/ccms_peak/hem25D_veh_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007603_031718-buffer ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145707750-1863977 02D02_rep_A_Naloxone hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145707750-1863977 02D02_rep_A_Naloxone hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130614733-1877547 13H06_rep_C_Molindone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130614733-1877547 13H06_rep_C_Molindone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101335845-1869416 07E11_rep_B_Troloxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101335845-1869416 07E11_rep_B_Troloxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_A3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152538967-1576959 Batch1_HCC1143_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111853351-1921674 2_E5_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111853351-1921674 2_E5_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_sample10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C1_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092248431-1878753 14G01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092248431-1878753 14G01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pepN_#1_P4B11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (pepN_#1_P4B11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111459164-1921087 1_E10_GAP1_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111459164-1921087 1_E10_GAP1_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ssuE_P4H6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ssuE_P4H6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hC2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hC2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2F04P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GE7_01_16890.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_090a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaJ_P3F3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (paaJ_P3F3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124240837-1876493 08B08_rep_D_Escitalopram_oxalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124240837-1876493 08B08_rep_D_Escitalopram_oxalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101154995-1869335 07F01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101154995-1869335 07F01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2E01Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_A7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD2_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_28_RIN_53.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_28_RIN_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121727159-1867080 04F06_rep_C_Pergolide_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121727159-1867080 04F06_rep_C_Pergolide_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/228.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case248_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case248_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mnaT_#2_P4E10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (mnaT_#2_P4E10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gmhB_P3G3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (gmhB_P3G3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153009787-1577186 Batch3_PANC0403_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153851507-1577610 Batch6_NCIH1299_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/QC_G1_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152327195-1868094 05C09_rep_D_Chlorprothixene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152327195-1868094 05C09_rep_D_Chlorprothixene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/264.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124933026-1876781 12B11_rep_C_Methylatropine_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124933026-1876781 12B11_rep_C_Methylatropine_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atoD_#1_P4C1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (atoD_#1_P4C1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123330838-1876053 08F05_rep_B_Carbidopab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123330838-1876053 08F05_rep_B_Carbidopab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112310453-1921895 3_G4_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112310453-1921895 3_G4_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/132_112_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124321255-1876526 08C08_rep_D_Cilostazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124321255-1876526 08C08_rep_D_Cilostazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007659_032118-1Thr4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hB2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hB2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ompN_P4C11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (ompN_P4C11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike2_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124123935-1876431 08H11_rep_D_Sertindoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124123935-1876431 08H11_rep_D_Sertindoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D3_postFOS_2_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114107326-1922795 4_C7_STE2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114107326-1922795 4_C7_STE2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Microbacterium_BM6G004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc1_T24_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_blank_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_A6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122305943-1867349 04H05_rep_D_Enalapril_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122305943-1867349 04H05_rep_D_Enalapril_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200937183-1877706 09A06_rep_B_Flurandrenolidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200937183-1877706 09A06_rep_B_Flurandrenolidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151406671-1924903 4_F4_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151406671-1924903 4_F4_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152100820-1867981 05B07_rep_C_Chlormezanoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152100820-1867981 05B07_rep_C_Chlormezanoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007536_031618-1Thr4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111551682-1871549 10E04_rep_B_Meclofenoxate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111551682-1871549 10E04_rep_B_Meclofenoxate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153037745-1868423 06E07_rep_B_Carteolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153037745-1868423 06E07_rep_B_Carteolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MSB04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person28_blood_youth_POS.mzXML at line 689
attributes construct error, line 41, column 83 (Person28_blood_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121714396-1879597 15B01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121714396-1879597 15B01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Positive_FGF1_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHF13.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET92.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET92.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_114.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/798.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224116783-1870441 01H10_rep_D_Diphemanil methylsulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224116783-1870441 01H10_rep_D_Diphemanil methylsulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165841436-2227547 PAT37.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_C12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153440436-1577401 Batch4_184A1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-cc3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C5_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1201.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1201.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202100092-1878214 09B01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202100092-1878214 09B01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ2_1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F17_id.mzML at line 21
index 529 is out of bounds for axis 0 with size 529
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Bosea_sp__LYD011.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_102.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_102.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113355179-1922418 2_H10_IZH2_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113355179-1922418 2_H10_IZH2_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/livH_#1_P4D11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (livH_#1_P4D11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201602944-1877987 09B08_rep_C_Benzamil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201602944-1877987 09B08_rep_C_Benzamil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122501912-1867443 04B03_rep_D_Diphenidol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122501912-1867443 04B03_rep_D_Diphenidol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoK_P5A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (nuoK_P5A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-144_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GC3_01_16931.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD5_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112524610-1874118 10B02_rep_D_Sulfaquinoxaline_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112524610-1874118 10B02_rep_D_Sulfaquinoxaline_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153127572-1577245 Batch4_SW156_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD5_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_233.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_08P_A2_id_negative.mzML at line 21
index 167 is out of bounds for axis 0 with size 167
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123459364-1876125 08H04_rep_B_Thiorphanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123459364-1876125 08H04_rep_B_Thiorphanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_C2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_C2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122244259-1879847 15A09_rep_C_Mepivacaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122244259-1879847 15A09_rep_C_Mepivacaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/TAA486_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/18_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD1_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O12_id_MSn_positive.mzML at line 21
index 386 is out of bounds for axis 0 with size 386
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150113387-1864172 02D06_rep_B_Haloperidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150113387-1864172 02D06_rep_B_Haloperidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152741572-1577061 Batch1_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_P11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/013_CRa_H9M5_M470_Blank_04_low_pos.mzXML at line 689
Premature end of data in tag peaks line 14023, line 14027, column 7673 (013_CRa_H9M5_M470_Blank_04_low_pos.mzXML, line 14027)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113019398-1922233 1_G2_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113019398-1922233 1_G2_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152543970-1576963 Batch2_OVCAR3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_03_leg_skin_control_oral_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_03_leg_skin_control_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_sample10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C4_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD5_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_060ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/46/67967085d438ccb4b59d956d030fdc/input_file/QC_20170209_060ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152121724-1576753 Batch1_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control177_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control177_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_390.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P3_id_MSn_positive.mzML at line 21
index 702 is out of bounds for axis 0 with size 702
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_P3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/amiD_P4E7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (amiD_P4E7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201055801-1881758 16H09_rep_B_Brimonidine_L-Tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201055801-1881758 16H09_rep_B_Brimonidine_L-Tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case82_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case82_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075232.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153536029-1868657 06H03_rep_C_Itoprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153536029-1868657 06H03_rep_C_Itoprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD4_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D1_preFOS_2_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111821785-1921647 2_H2_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111821785-1921647 2_H2_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike6_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ssuA_P3E11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (ssuA_P3E11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152257577-1576829 Batch2_NCIH460_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD1_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151342276-1576376 Batch6_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224239612-1870506 01H11_rep_D_Trimethobenzamide hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224239612-1870506 01H11_rep_D_Trimethobenzamide hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121827994-1879653 15D03_rep_B_Mesnab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121827994-1879653 15D03_rep_B_Mesnab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B18_id_MSn_negative.mzML at line 21
index 254 is out of bounds for axis 0 with size 254
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114002724-1874773 11C03_rep_D_Clidinium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114002724-1874773 11C03_rep_D_Clidinium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_plasma_4h_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer3_plasma_4h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ1_6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123141411-1867759 05G07_rep_B_GBR_12909_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123141411-1867759 05G07_rep_B_GBR_12909_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1203.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1203.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mutT_P3D3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (mutT_P3D3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_118.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_34_NOR_20.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_34_NOR_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153734551-1868753 06B10_rep_C_Bisacodylb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153734551-1868753 06B10_rep_C_Bisacodylb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS309P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potE_#1_P4H5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (potE_#1_P4H5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210313_LKM_mb_overnight_urea_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG19.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-cc6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metQ_#2_P4E5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (metQ_#2_P4E5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101446184-1869472 07H06_rep_C_Nifuroxazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101446184-1869472 07H06_rep_C_Nifuroxazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_C9_id_negative.mzML at line 21
index 225 is out of bounds for axis 0 with size 225
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123049305-1875923 08B01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123049305-1875923 08B01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/234.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122212411-1867306 04E07_rep_D_Perhexiline_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122212411-1867306 04E07_rep_D_Perhexiline_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES221.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125740617-1863116 04C04_rep_A_Doxepin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125740617-1863116 04C04_rep_A_Doxepin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hycF_#3_P4H3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (hycF_#3_P4H3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_mock_d1_289_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 27047, column 1 (SysVirol_IFL001_mock_d1_289_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 27047)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Bosea_LYD014.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_C12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H11_id_MSn_positive.mzML at line 21
index 523 is out of bounds for axis 0 with size 523
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N12.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125444614-1862972 03E01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125444614-1862972 03E01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8H12_160605170309.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_262_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121116572-1879328 14B09_rep_D_Ondansetron_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121116572-1879328 14B09_rep_D_Ondansetron_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151235323-1576320 Batch5_PC9_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate28/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample230.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151413723-1924909 4_D9_SNF3_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151413723-1924909 4_D9_SNF3_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C10_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150619288-1864888 02H08_rep_C_Gallamine triethiodidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150619288-1864888 02H08_rep_C_Gallamine triethiodidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114028502-1922761 3_F1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114028502-1922761 3_F1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N16.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170127_050ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/1f/856f5d5f1dd16d556f3467ce100ab7/input_file/MMW4_20170127_050ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNS654_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/blank_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124834863-1876738 12E06_rep_C_Thonzonium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124834863-1876738 12E06_rep_C_Thonzonium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125141915-1862824 03C02_rep_C_Ampyronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125141915-1862824 03C02_rep_C_Ampyronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201101791-1877768 09H11_rep_B_Cefuroxime_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201101791-1877768 09H11_rep_B_Cefuroxime_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD1_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079284/ccms_peak/Duncan et al. 30 Salinispora/21b.mzXML at line 689
Premature end of data in tag mzXML line 2, line 5, column 1 (21b.mzXML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ5_5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151735502-1576570 Batch4_DU145_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/003_Ammonia_Day4_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_144.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124226828-1862266 03E03_rep_A_Tiratricol,_3,3',5-triiodothyroacetic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124226828-1862266 03E03_rep_A_Tiratricol,_3,3',5-triiodothyroacetic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA20.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD1_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210923_LKM_beads_timecourse_10min_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_E12_id_negative.mzML at line 21
index 212 is out of bounds for axis 0 with size 212
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dmsC_P4F3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (dmsC_P4F3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD3_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample003_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V4_EDTAk3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123313029-1867833 05C03_rep_B_Methapyrilene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123313029-1867833 05C03_rep_B_Methapyrilene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150654843-1864915 02C06_rep_C_Danazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150654843-1864915 02C06_rep_C_Danazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/722.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152901354-1868351 06F04_rep_A_Calcipotrieneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152901354-1868351 06F04_rep_A_Calcipotrieneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yqaB_#1_P4F2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (yqaB_#1_P4F2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122735052-1880071 15G11_rep_D_Fosinoprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122735052-1880071 15G11_rep_D_Fosinoprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124530154-1862411 03E02_rep_A_Ranitidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124530154-1862411 03E02_rep_A_Ranitidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081118/ccms_peak/Beers19_ms2ldaPLUS/POSmode/Pooled_Beers_multibeers_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000081118/ccms_peak/Beers19_ms2ldaPLUS/POSmode/Pooled_Beers_multibeers_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_11_AC+_30.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAJ03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_24.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_24.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/OVA2_40EV_RA2_01_22491.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/626.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151727105-1576563 Batch4_DU145_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122546230-1867479 05A03_rep_A_Alfuzosin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122546230-1867479 05A03_rep_A_Alfuzosin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_19032112_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD5_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125929214-1863207 04H04_rep_A_Trifluoperazine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125929214-1863207 04H04_rep_A_Trifluoperazine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_MSMS_2022_1003_Michael_leming_liver_neg-0014.mzML at line 689
Premature end of data in tag binary line 21041, line 21041, column 1142112 (pooled_MSMS_2022_1003_Michael_leming_liver_neg-0014.mzML, line 21041)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/304.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151719968-1576557 Batch4_DU145_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152712086-1868266 06D04_rep_A_Cyanocobalamina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152712086-1868266 06D04_rep_A_Cyanocobalamina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/712.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case223_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case223_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_139.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hA2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hA2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096473/raw/L_5_neg_02212023_023.mzML at line 689
Premature end of data in tag binary line 126925, line 126925, column 21659 (L_5_neg_02212023_023.mzML, line 126925)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B8_id_MSn_negative.mzML at line 21
index 281 is out of bounds for axis 0 with size 281
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121728411-1867081 04F06_rep_C_Pergolide_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121728411-1867081 04F06_rep_C_Pergolide_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102131927-1869800 07E02_rep_D_Lofexidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102131927-1869800 07E02_rep_D_Lofexidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150706094-1924540 2_G8_RGT2_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150706094-1924540 2_G8_RGT2_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/L1cells_1_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0027_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0027_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112826111-1874262 11E05_rep_A_Procyclidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112826111-1874262 11E05_rep_A_Procyclidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person17_RBC_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 81 (Person17_RBC_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201541619-1877971 09E05_rep_C_Mirabegronb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201541619-1877971 09E05_rep_C_Mirabegronb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yghU_P3E8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (yghU_P3E8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170127_065ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/57/f61d038993a36650db7a5b09e20704/input_file/MMW6_20170127_065ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/maeA_P3B2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (maeA_P3B2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085122/peak/27.mzXML at line 88
Invalid base64-encoded string: number of data characters (135725) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Citrobacter_sp__EB1K011.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092727749-1878970 14G10_rep_B_Rifabutina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092727749-1878970 14G10_rep_B_Rifabutina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_18111330_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130635094-1877563 13C08_rep_C_Pramipexole_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130635094-1877563 13C08_rep_C_Pramipexole_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114049239-1922779 3_D5_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114049239-1922779 3_D5_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P19_id_MSn_positive.mzML at line 21
index 751 is out of bounds for axis 0 with size 751
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYD003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E2_id_MSn_positive.mzML at line 21
index 405 is out of bounds for axis 0 with size 405
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GC12_01_12109.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5A09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009389_IBD200_E3_B4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD5_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yejB_#2_P5A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (yejB_#2_P5A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093526/peak/mzML/multiCE/Sa04_Water_POS_MultiNCE.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike5_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224120814-1870444 01D07_rep_D_Troleandomycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224120814-1870444 01D07_rep_D_Troleandomycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_06.mzXML at line 689
Premature end of data in tag msRun line 5, line 20632, column 1 (20121114_06.mzXML, line 20632)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/388.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_51_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_51_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GC6_01_17167.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_G9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_M10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_0126_190128231908.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202040183-1882200 16A05_rep_D_Nevirapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202040183-1882200 16A05_rep_D_Nevirapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223051211-1869963 01B11_rep_A_Minoxidila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223051211-1869963 01B11_rep_A_Minoxidila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_119.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dgoT_P3E10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (dgoT_P3E10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/880.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111845046-1872069 10B08_rep_C_Trimetozineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111845046-1872069 10B08_rep_C_Trimetozineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNB091_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152010667-1576697 Batch1_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125330257-1876959 12F07_rep_D_Bephenium_hydroxynaphthoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125330257-1876959 12F07_rep_D_Bephenium_hydroxynaphthoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124922352-1876773 12C02_rep_C_Hymecromoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124922352-1876773 12C02_rep_C_Hymecromoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_10_Blood_Ma_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 87 (Mouse_10_Blood_Ma_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_19_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_19_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cynS_P5D1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (cynS_P5D1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET106.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET106.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125754939-1877162 13E09_rep_A_Gabexate_mesilateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125754939-1877162 13E09_rep_A_Gabexate_mesilateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/CPV_P_rep_2_B-E5_1_5864.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/488.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_G6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L13_id.mzML at line 21
index 508 is out of bounds for axis 0 with size 508
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170209_022ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/d9/5b6d32258e586e906f979c8efb5051/input_file/SH8_20170209_022ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYD007.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trxA_P4F7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (trxA_P4F7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094957/peak/POLAR_NEGATIVE/E06_Polar_Daph_WCX2_Phenyl_LCMS_Neg_DIMSn.mzML at line 689
Premature end of data in tag binaryDataArray line 5388, line 5392, column 5 (E06_Polar_Daph_WCX2_Phenyl_LCMS_Neg_DIMSn.mzML, line 5392)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125938250-1877242 13A02_rep_A_Denatonium_benzoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125938250-1877242 13A02_rep_A_Denatonium_benzoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113602321-1874580 11F02_rep_C_Paroxetine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113602321-1874580 11F02_rep_C_Paroxetine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153645280-1577504 Batch4_SW1573_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G11_id.mzML at line 21
index 575 is out of bounds for axis 0 with size 575
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210313_LKM_mb_overnight_urea_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113850421-1874715 11E07_rep_D_Ethynylestradiol_3-methyl_etherb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113850421-1874715 11E07_rep_D_Ethynylestradiol_3-methyl_etherb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fruA_P3A8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (fruA_P3A8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/araA_P4C3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (araA_P4C3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150323182-1864752 02D11_rep_B_Triamcinolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150323182-1864752 02D11_rep_B_Triamcinolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_E8_id_positive.mzML at line 21
index 328 is out of bounds for axis 0 with size 328
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1148.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/napC_P4F5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (napC_P4F5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/16FEB2021 Column3_test_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc064_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc064_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_4_B_rep_2_B-B3_1_5644.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007614_032118-Unst2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153027759-1868416 06A06_rep_B_Pepstatin_Aa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153027759-1868416 06A06_rep_B_Pepstatin_Aa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111849793-1921671 2_A2_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111849793-1921671 2_A2_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222944956-1869914 01E05_rep_A_Isoxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222944956-1869914 01E05_rep_A_Isoxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_2pluskal_mce_1D1_C24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30075 - GI-14-594.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/clcB_P3G9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (clcB_P3G9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d1_294_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 32717, column 1 (SysVirol_IFL001_1918_d1_294_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 32717)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152654846-1577022 Batch2_PC3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_18091336_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223909287-2227695 Healthy8.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130041977-1863266 04D05_rep_A_Prednisolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130041977-1863266 04D05_rep_A_Prednisolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GD6_01_16823.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIAI10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_E11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_Zk4633.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control145_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control145_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152229872-1576807 Batch2_T47D_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145855703-1864064 02G02_rep_A_Verapamil hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145855703-1864064 02G02_rep_A_Verapamil hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample131_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_66_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_66_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222930392-1869903 01G11_rep_A_Tolnaftatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222930392-1869903 01G11_rep_A_Tolnaftatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cpsB_P3A3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (cpsB_P3A3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_E9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088447/raw/Aurafathia0102_/210916_tanaka05.mzXML at line 689
Premature end of data in tag peaks line 45104, line 45108, column 91388 (210916_tanaka05.mzXML, line 45108)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F13_id_MSn_positive.mzML at line 21
index 703 is out of bounds for axis 0 with size 703
Error processing file: /data/datasets/server/MassIVE/MSV000096497/peak/20200807_ProgressCurveAnalysis_PfkA_set2_eff9_t2_rep1.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000096497/peak/20200807_ProgressCurveAnalysis_PfkA_set2_eff9_t2_rep1.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/maa_#2_P5C7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (maa_#2_P5C7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2C05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD3_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150919816-1865028 02H01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150919816-1865028 02H01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GD2_01_17186.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150821821-1864983 02G05_rep_D_Loperamide hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150821821-1864983 02G05_rep_D_Loperamide hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150846309-1865002 02A03_rep_D_Fulvestranta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150846309-1865002 02A03_rep_D_Fulvestranta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/165-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_19032112_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075233.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150415676-1924395 1_C3_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150415676-1924395 1_C3_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_57.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/592.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153239837-1868518 06A11_rep_B_Amphotericin_Ba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153239837-1868518 06A11_rep_B_Amphotericin_Ba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/582.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/697.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlC3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlC3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc062_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc062_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K4_id_MSn_negative.mzML at line 21
index 378 is out of bounds for axis 0 with size 378
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GA11_01_12074.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_0126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151626457-1576512 Batch7_HCC38_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/avtA_#1_P4H9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (avtA_#1_P4H9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlD2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlD2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/3dhq_aroD_P5D7_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (3dhq_aroD_P5D7_Aquity_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223250800-1870053 01G03_rep_B_Homatropine hydrobromide (R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223250800-1870053 01G03_rep_B_Homatropine hydrobromide (R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165828432-2227535 PAT41.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153403565-1577371 Batch4_NCIH1651_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123456792-1876123 08C10_rep_B_Azelastine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123456792-1876123 08C10_rep_B_Azelastine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112441257-1921975 3_H9_GPR1_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112441257-1921975 3_H9_GPR1_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2E03Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_C5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153226460-1577292 Batch4_CAKI1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/936.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person11_RBC_youth_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Person11_RBC_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153401412-1868582 06G10_rep_B_Niridazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153401412-1868582 06G10_rep_B_Niridazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample118.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150912115-1865022 02D07_rep_D_Naltrexone hydrochloride dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150912115-1865022 02D07_rep_D_Naltrexone hydrochloride dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ispA_#4_P3H9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (ispA_#4_P3H9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121537419-1879522 15E08_rep_A_Desloratadinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121537419-1879522 15E08_rep_A_Desloratadinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122400215-1879905 15F05_rep_C_Ibudilastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122400215-1879905 15F05_rep_C_Ibudilastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151438553-1576423 Batch6_MOLT4_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/269.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc2_T4_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093154305-1879176 14D08_rep_C_Formestanea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093154305-1879176 14D08_rep_C_Formestanea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125502731-1862987 03B11_rep_D_Flutamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125502731-1862987 03B11_rep_D_Flutamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5G03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/emtA_P3B5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (emtA_P3B5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Blank_pesticide_170405002155.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101740077-1869611 07F11_rep_C_Clorsulona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101740077-1869611 07F11_rep_C_Clorsulona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122230089-1867320 04B07_rep_D_Isotretinoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122230089-1867320 04B07_rep_D_Isotretinoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C16_id.mzML at line 21
index 548 is out of bounds for axis 0 with size 548
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike1_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I3_id_MSn_negative.mzML at line 21
index 348 is out of bounds for axis 0 with size 348
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100818658-1869163 07A10_rep_A_Ceftazidime_pentahydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100818658-1869163 07A10_rep_A_Ceftazidime_pentahydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1054.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1054.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075941.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123117865-1875946 08C03_rep_A_Camylofine_chlorhydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123117865-1875946 08C03_rep_A_Camylofine_chlorhydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_93.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_93.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/leuA_P3H8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (leuA_P3H8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_A9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N7_id_MSn_negative.mzML at line 21
index 343 is out of bounds for axis 0 with size 343
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/5.6_ITA _VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A7Pa10mm_black_P1-B-6_01_23070.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28022021_Batch02_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009627_IBD200_E17_A7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N23_id_negative.mzML at line 21
index 263 is out of bounds for axis 0 with size 263
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_15.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_15.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122959239-1867682 05H10_rep_B_Prochlorperazine_dimaleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122959239-1867682 05H10_rep_B_Prochlorperazine_dimaleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atoB_P4C4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (atoB_P4C4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_M_pos_IMS1_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C4_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc018_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc018_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S121.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S121.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR17_5h2a.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122336403-1879887 15G10_rep_C_Imiquimodb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122336403-1879887 15G10_rep_C_Imiquimodb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp2/20180309173116010-1989064 wound 5db.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150546767-1924472 1_C7_RGT2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150546767-1924472 1_C7_RGT2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-blank (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150503974-1924435 1_G4_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150503974-1924435 1_G4_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1025.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D2_postFOS_1_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150418042026.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111814120-1872045 10A06_rep_C_Deferoxamine_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111814120-1872045 10A06_rep_C_Deferoxamine_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample35n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_127b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N19_id_MSn_positive.mzML at line 21
index 561 is out of bounds for axis 0 with size 561
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121946066-1867189 04D09_rep_C_Cinnarizineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121946066-1867189 04D09_rep_C_Cinnarizineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Bosea_sp_LYA002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124457494-1876605 09C10_rep_A_Zonisamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124457494-1876605 09C10_rep_A_Zonisamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_C9_id_positive.mzML at line 21
index 371 is out of bounds for axis 0 with size 371
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112615935-1922057 4_E10_GPR1_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112615935-1922057 4_E10_GPR1_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-1-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_E2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/940.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201119452-1877781 09G03_rep_B_Succinylsulfathiazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201119452-1877781 09G03_rep_B_Succinylsulfathiazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pncB_P3D9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (pncB_P3D9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B7_id_MSn_negative.mzML at line 21
index 283 is out of bounds for axis 0 with size 283
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088017/ccms_peak/12301-WT3-15_Treffon-006.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/390.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125945558-1863221 04E04_rep_A_Homochlorcyclizine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125945558-1863221 04E04_rep_A_Homochlorcyclizine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111745990-1921616 1_A2_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111745990-1921616 1_A2_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C3_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151948925-1576680 Batch1_HCC1806_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123354004-1876072 08F08_rep_B_Quipazine_dimaleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123354004-1876072 08F08_rep_B_Quipazine_dimaleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_23.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_23.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0010_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/654.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153758281-1868772 06A09_rep_C_Butoconazole_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153758281-1868772 06A09_rep_C_Butoconazole_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_48.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152037355-1576718 Batch1_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I5_id_MSn_positive.mzML at line 21
index 700 is out of bounds for axis 0 with size 700
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123802111-1876270 08A05_rep_C_Pentobarbitala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123802111-1876270 08A05_rep_C_Pentobarbitala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121013923-1879281 14E10_rep_D_(S)-(-)-Cycloserineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121013923-1879281 14E10_rep_D_(S)-(-)-Cycloserineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GE8_01_12139.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_31_AC+20.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_09_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_09_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091754405-1878522 13F08_rep_D_Etilefrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091754405-1878522 13F08_rep_D_Etilefrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152421494-1868135 05A02_rep_D_Streptomycin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152421494-1868135 05A02_rep_D_Streptomycin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_151.mzXML at line 689
Premature end of data in tag peaks line 23193, line 23197, column 11844 (20121114_151.mzXML, line 23197)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_15_Liver_CMC_control_NEG.mzXML at line 689
attributes construct error, line 38, column 91 (Mouse_15_Liver_CMC_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_70.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control49_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control49_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_135.mzXML at line 689
Premature end of data in tag peaks line 22207, line 22211, column 11843 (20121114_135.mzXML, line 22211)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122910021-1875845 08D06_rep_A_Exemestaneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122910021-1875845 08D06_rep_A_Exemestaneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113857424-1922680 3_C11_STE2_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113857424-1922680 3_C11_STE2_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123257608-1876026 08D02_rep_B_Emedastinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123257608-1876026 08D02_rep_B_Emedastinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GA3_01_16769.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix8_160601003916.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145853163-1864062 02F02_rep_A_Glipizideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145853163-1864062 02F02_rep_A_Glipizideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Serratia_MADAA04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pyrG_#1_P5B6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (pyrG_#1_P5B6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C6_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222947584-1869916 01C05_rep_A_Norethynodrelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222947584-1869916 01C05_rep_A_Norethynodrelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B12_id_MSn_positive.mzML at line 21
index 618 is out of bounds for axis 0 with size 618
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130553949-1877531 13C01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130553949-1877531 13C01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_A8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_A8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_25_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_25_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_79.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114205226-1874872 11B06_rep_D_Fosfosala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114205226-1874872 11B06_rep_D_Fosfosala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222722232-1869806 01C08_rep_A_Doxylamine succinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222722232-1869806 01C08_rep_A_Doxylamine succinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151117857-1865120 02A11_rep_D_Pindolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151117857-1865120 02A11_rep_D_Pindolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151114966-1924755 3_E3_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151114966-1924755 3_E3_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125259802-1862887 03H03_rep_C_Scopolamin-N-oxide_hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125259802-1862887 03H03_rep_C_Scopolamin-N-oxide_hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_134.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_134.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GF8_01_16971.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A7_id_MSn_negative.mzML at line 21
index 240 is out of bounds for axis 0 with size 240
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150624083-1924504 2_F3_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150624083-1924504 2_F3_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121625268-1879559 15D09_rep_A_Granisetronb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121625268-1879559 15D09_rep_A_Granisetronb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlA2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlA2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MSA16.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124536697-1862416 03A02_rep_A_Isoniazidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124536697-1862416 03A02_rep_A_Isoniazidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/entC_P3C1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (entC_P3C1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202016781-1878180 09A07_rep_D_Oxiconazole_Nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202016781-1878180 09A07_rep_D_Oxiconazole_Nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150316476-1924345 1_H9_RGT2_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150316476-1924345 1_H9_RGT2_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165836057-2227542 Healthy5.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1767.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1767.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152925370-1577149 Batch3_A498_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150512844-1924443 1_D1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150512844-1924443 1_D1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152929175-1868373 06G10_rep_A_Niridazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152929175-1868373 06G10_rep_A_Niridazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sucB_P4C1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (sucB_P4C1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151352922-1576385 Batch6_CALU1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_blank_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114322651-1874935 12E02_rep_A_Nizatidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114322651-1874935 12E02_rep_A_Nizatidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152704222-1577030 Batch3_KP4_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122320918-1879875 15E11_rep_C_Tulobuterolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122320918-1879875 15E11_rep_C_Tulobuterolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112951480-1922211 1_H3_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112951480-1922211 1_H3_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201554669-1877981 09B09_rep_C_Suxibuzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201554669-1877981 09B09_rep_C_Suxibuzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_A7_id_negative.mzML at line 21
index 200 is out of bounds for axis 0 with size 200
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_high (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130047574-1877292 13F05_rep_A_Sertralineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130047574-1877292 13F05_rep_A_Sertralineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201337034-1881879 16G07_rep_B_Alosetron_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201337034-1881879 16G07_rep_B_Alosetron_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130020254-1877273 13H05_rep_A_Pancuronium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130020254-1877273 13H05_rep_A_Pancuronium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G15_id_MSn_negative.mzML at line 21
index 340 is out of bounds for axis 0 with size 340
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD6_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201247928-1881842 16B08_rep_B_Tolcaponeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201247928-1881842 16B08_rep_B_Tolcaponeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123758374-1876267 08C05_rep_C_Yohimbine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123758374-1876267 08C05_rep_C_Yohimbine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_56_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_56_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/CORN_AAW4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091720380-1878495 13E07_rep_D_Darunavirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091720380-1878495 13E07_rep_D_Darunavirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person12_blood_youth_POS.mzXML at line 689
attributes construct error, line 41, column 100 (Person12_blood_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091724194-1878498 13G06_rep_D_Letrozolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091724194-1878498 13G06_rep_D_Letrozolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F11_id_MSn_negative.mzML at line 21
index 335 is out of bounds for axis 0 with size 335
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_128.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223159950-1870015 01B04_rep_B_Hydroflumethiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223159950-1870015 01B04_rep_B_Hydroflumethiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malZ_P4G6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (malZ_P4G6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hB1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hB1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/638.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ROO2_30EV_RA3_01_22564.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152046322-1867969 05H04_rep_C_Hemicholinium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152046322-1867969 05H04_rep_C_Hemicholinium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mglC_P3D2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (mglC_P3D2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223812265-2227646 PAT40.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080071/ccms_peak/Dataset 1/Positive3/NZ Lichen_P_2_lichen_07_F 3_BD3_01_25219.mzXML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C5_id_MSn_negative.mzML at line 21
index 272 is out of bounds for axis 0 with size 272
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121654925-1867054 04C01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121654925-1867054 04C01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114418638-1874981 12G05_rep_A_Phenoxybenzamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114418638-1874981 12G05_rep_A_Phenoxybenzamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130056542-1877299 13H06_rep_B_Molindone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130056542-1877299 13H06_rep_B_Molindone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample103_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153612841-1577477 Batch4_NCIH1666_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153931815-1577644 Batch6_OVCAR8_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100147904-1868852 06C10_rep_D_Valacyclovir_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100147904-1868852 06C10_rep_D_Valacyclovir_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170207_059EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/26/3795b053bc88612e72abe4f7d8fe22/input_file/SH9_20170207_059EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rbsB_P3C8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (rbsB_P3C8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_2pluskal_mce_1D3_E16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088606/ccms_peak/210116_AR_12_43_C09_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/norV_#2_P3F3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (norV_#2_P3F3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111527037-1921496 1_B8_GAP1_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111527037-1921496 1_B8_GAP1_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Pos/P8.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1147.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Pool_1_B-A2_1_5628.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_blank_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A14_id_MSn_positive.mzML at line 21
index 699 is out of bounds for axis 0 with size 699
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Pinoresinol_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_D4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A15_id_MSn_positive.mzML at line 21
index 695 is out of bounds for axis 0 with size 695
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122525210-1867462 05G09_rep_A_Dequalinium_dichloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122525210-1867462 05G09_rep_A_Dequalinium_dichloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hypB_P3E12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (hypB_P3E12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124303055-1862295 03F01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124303055-1862295 03F01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Blank_pesticide_170403020327.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150114585-1864173 02A10_rep_B_Busulfana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150114585-1864173 02A10_rep_B_Busulfana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_D4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/474.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rsgA_P3H8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (rsgA_P3H8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STY1_20EV_RA2_01_22637.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control64_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control64_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/440.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc049_neg.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc049_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/884.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E16_id.mzML at line 21
index 565 is out of bounds for axis 0 with size 565
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151355306-1576387 Batch6_RPMI8226_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sstT_#2_P4A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (sstT_#2_P4A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Positive_Veh_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/Alb-PDI-plasma-VLDL-26-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD1_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murJ_P3G12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (murJ_P3G12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E7_id_MSn_positive.mzML at line 21
index 524 is out of bounds for axis 0 with size 524
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_135.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_135.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_E11_id_positive.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4C08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153730834-1577542 Batch4_DU145_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151559044-1576489 Batch7_UACC62_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121944746-1867188 04D09_rep_C_Cinnarizinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121944746-1867188 04D09_rep_C_Cinnarizinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113452768-1922468 2_B11_IZH2_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113452768-1922468 2_B11_IZH2_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0007_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0007_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_74_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_74_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101729089-1869602 07C01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101729089-1869602 07C01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223900002-2227688 Healthy5.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202103944-1878217 09D03_rep_D_Sumatriptan_succinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202103944-1878217 09D03_rep_D_Sumatriptan_succinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/PYURF interactome/PYURF_MBP3_CEV_07122029.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ytfQ_P4B11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ytfQ_P4B11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ4_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124001897-1876366 08G11_rep_D_Dimethisoquin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124001897-1876366 08G11_rep_D_Dimethisoquin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_A2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151630058-1576515 Batch7_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2G07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145533051-1863901 02F04_rep_A_Hydroxyzine dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145533051-1863901 02F04_rep_A_Hydroxyzine dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F21_id_MSn_positive.mzML at line 21
index 428 is out of bounds for axis 0 with size 428
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A1_id_MSn_positive.mzML at line 21
index 422 is out of bounds for axis 0 with size 422
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/271.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100519772-1869019 06H11_rep_D_Closantela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100519772-1869019 06H11_rep_D_Closantela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009549_IBD200_E12_A7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153824439-1868793 06E02_rep_C_Estradiol-17_betab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153824439-1868793 06E02_rep_C_Estradiol-17_betab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET80.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET80.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092406222-1878813 14C10_rep_A_Mesalamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092406222-1878813 14C10_rep_A_Mesalamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190125104012.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d1_292_lipid__Neg_17Sep13_13-07-01.mzXML at line 689
Premature end of data in tag peaks line 37603, line 37607, column 3562 (SysVirol_IFL001_1918_d1_292_lipid__Neg_17Sep13_13-07-01.mzXML, line 37607)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhaA_P4C6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (rhaA_P4C6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person02_RBC_youth_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Person02_RBC_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114320081-1922914 4_A8_STE2_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114320081-1922914 4_A8_STE2_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ascF_#1_P3B2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ascF_#1_P3B2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125256073-1862884 03C01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125256073-1862884 03C01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_83.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_70.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_70.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_132a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glgC_P3D6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (glgC_P3D6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151350532-1576383 Batch6_OVCAR3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0021_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/748.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114226548-1922866 4_E7_STE2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114226548-1922866 4_E7_STE2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007678_032118-1CRP4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114809466-1875159 12B06_rep_B_Aminohippuric_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114809466-1875159 12B06_rep_B_Aminohippuric_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4E09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/5'-S-methyl-5'-thioadenosine.mzXML at line 689
Premature end of data in tag peaks line 5087, line 5091, column 69096 (5'-S-methyl-5'-thioadenosine.mzXML, line 5091)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121331305-1879428 15H09_rep_A_Sildenafila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121331305-1879428 15H09_rep_A_Sildenafila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K7_id_MSn_positive.mzML at line 21
index 538 is out of bounds for axis 0 with size 538
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlD1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlD1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000092820/raw/083123_Matthaei_Herbarium_lowmz/2020_Matthaei_nBuOH_150-450mz/Ochrosia-elliptica_20210103101823-Stem-nBuOH-2020.mzML copy. at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/PED1_MS_RA5_01_22663.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_A3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121145840-1879350 14F11_rep_D_Toltrazurila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121145840-1879350 14F11_rep_D_Toltrazurila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112614802-1922056 4_E10_GPR1_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112614802-1922056 4_E10_GPR1_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201815048-1882086 16E07_rep_C_Enalaprilat_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201815048-1882086 16E07_rep_C_Enalaprilat_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_57_CNR_52.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_57_CNR_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114307969-1922903 4_E1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114307969-1922903 4_E1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124803605-1862650 03C06_rep_B_Aztreonama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124803605-1862650 03C06_rep_B_Aztreonama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_G10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GC4_01_17041.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_C5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K8_id_MSn_positive.mzML at line 21
index 523 is out of bounds for axis 0 with size 523
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_E4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111346538-1871453 10E08_rep_B_Guanadrel_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111346538-1871453 10E08_rep_B_Guanadrel_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202205022-1878265 10B08_rep_A_Trimetozineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202205022-1878265 10B08_rep_A_Trimetozineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222750175-1869827 01F08_rep_A_Benoxinate hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222750175-1869827 01F08_rep_A_Benoxinate hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113801335-1874675 11H06_rep_C_Reserpineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113801335-1874675 11H06_rep_C_Reserpineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124705250-1862603 03B04_rep_B_Tranylcypromine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124705250-1862603 03B04_rep_B_Tranylcypromine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/776.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_E9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100854077-1869191 07F05_rep_A_Atovaquonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100854077-1869191 07F05_rep_A_Atovaquonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argT_P4C2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (argT_P4C2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122715830-1880056 15B05_rep_D_Anethole-trithionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122715830-1880056 15B05_rep_D_Anethole-trithionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151824607-1576610 Batch3_J82_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/31_D25062013T0229_1399CBU_0014_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xylB_#5_P4C8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (xylB_#5_P4C8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/QC_12_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/005_Soil_10mMIntra_2_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-023_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153802029-1577568 Batch7_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125853852-1863177 04B06_rep_A_Niflumic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125853852-1863177 04B06_rep_A_Niflumic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GE9_01_12140.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153311788-1577329 Batch4_NCIH1666_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152228615-1576806 Batch2_T47D_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_E10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220222_LKM_Plasma_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112514568-1874110 10G01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112514568-1874110 10G01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/157-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202020740-1878183 09C11_rep_D_Irsogladine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202020740-1878183 09C11_rep_D_Irsogladine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample058_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nupC_#2_P5G9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (nupC_#2_P5G9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112858084-1874287 11F02_rep_A_Paroxetine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112858084-1874287 11F02_rep_A_Paroxetine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GE3_01_16834.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ7_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hC3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hC3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_28_2022_1003_Michael_leming_liver_neg-0.0052.mzML at line 689
Premature end of data in tag binary line 16544, line 16544, column 1271158 (3_28_2022_1003_Michael_leming_liver_neg-0.0052.mzML, line 16544)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6E07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4C03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125558822-1877072 12A07_rep_D_Clioquinolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125558822-1877072 12A07_rep_D_Clioquinolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case63_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case63_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111420646-1871479 10H01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111420646-1871479 10H01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_A2_id_negative.mzML at line 21
index 208 is out of bounds for axis 0 with size 208
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112315047-1921899 3_B1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112315047-1921899 3_B1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210112_AD_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123059368-1875931 08G09_rep_A_Benazepril_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123059368-1875931 08G09_rep_A_Benazepril_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GB2_01_11631.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F4_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152506544-1576932 Batch2_OVCAR8_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200903358-1881675 16C08_rep_A_Algestone_acetophenidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200903358-1881675 16C08_rep_A_Algestone_acetophenidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/A1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.grif_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121232427-1879385 14A05_rep_D_Prednicarbateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121232427-1879385 14A05_rep_D_Prednicarbateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151854254-1867879 05G02_rep_C_Lidoflazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151854254-1867879 05G02_rep_C_Lidoflazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121600861-1879540 15A11_rep_A_Estradiol_Valeratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121600861-1879540 15A11_rep_A_Estradiol_Valeratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H19_id_negative.mzML at line 21
index 242 is out of bounds for axis 0 with size 242
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096049/peak/HNRC_samples_mzML/HNRC_100H2O_P3_H1.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000096049/peak/HNRC_samples_mzML/HNRC_100H2O_P3_H1.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153533340-1577444 Batch4_SW1573_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fruB_P3B8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (fruB_P3B8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_A8_id_negative.mzML at line 21
index 648 is out of bounds for axis 0 with size 648
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/838.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case25_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case25_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151946376-1576678 Batch1_HCC1395_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100255588-1868905 06E10_rep_D_Pilocarpine_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100255588-1868905 06E10_rep_D_Pilocarpine_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124912916-1876766 12G11_rep_C_Stavudinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124912916-1876766 12G11_rep_C_Stavudinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121559694-1879539 15B07_rep_A_Caffeineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121559694-1879539 15B07_rep_A_Caffeineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/003_Ammonia_Day4_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD6_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210110_AD_38.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151850858-1576632 Batch7_M14_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cdsA_P4F1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (cdsA_P4F1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H22_id_MSn_positive.mzML at line 21
index 602 is out of bounds for axis 0 with size 602
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_43_AC+_51.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201220_LKM_1to1_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122856334-1880135 15G04_rep_D_Gemcitabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122856334-1880135 15G04_rep_D_Gemcitabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIAJ04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000097739/peak/C0_1 MSMS pos.mzML at line 640
'selectedIonList'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/BeautyProducts_Vol3/BP4_01_12408.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125905114-1877216 13B02_rep_A_Remoxipride_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125905114-1877216 13B02_rep_A_Remoxipride_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7G06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2L024B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151346998-1576380 Batch6_RPMI8226_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_11_dorsal_skin_RESV_skin_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_11_dorsal_skin_RESV_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122310377-1879867 15E09_rep_C_Clarithromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122310377-1879867 15E09_rep_C_Clarithromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_E10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GE5_01_11687.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_E3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113620813-1922544 2_C8_IZH2_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113620813-1922544 2_C8_IZH2_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153503737-1577420 Batch4_SW1573_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113932226-1922711 3_F10_STE2_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113932226-1922711 3_F10_STE2_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-qc_high.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GB10_01_11642.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007506_031618-0.01Thr1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample066_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112116073-1873054 10E08_rep_C_Guanadrel_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112116073-1873054 10E08_rep_C_Guanadrel_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/610.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GB9_01_17032.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample177_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151510385-1576449 Batch7_CORL88_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB3A02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202128706-1878236 09H04_rep_D_Dipyronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202128706-1878236 09H04_rep_D_Dipyronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113336793-1874501 11G07_rep_B_Azacytidine-5b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113336793-1874501 11G07_rep_B_Azacytidine-5b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_G11_id_negative.mzML at line 21
index 189 is out of bounds for axis 0 with size 189
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_170.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ompN_P4C11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ompN_P4C11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/iscA_#1_P5F5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (iscA_#1_P5F5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD3_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007549_031618-1CRP2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_72.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N13.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_blank_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145654238-1863966 02G09_rep_A_Canrenoic acid potassium saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145654238-1863966 02G09_rep_A_Canrenoic acid potassium saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170207_033EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/4a/12be34914b42a4ad4eba1828da03c9/input_file/MMW5_20170207_033EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123349256-1876068 08A07_rep_B_Eserine_hemisulfate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123349256-1876068 08A07_rep_B_Eserine_hemisulfate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/mb1.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_59_RIN_52.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_59_RIN_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202551081-1878443 10B09_rep_A_Folinic_acid_calcium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202551081-1878443 10B09_rep_A_Folinic_acid_calcium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/ccms_peak/Raw_Spectrum_Files/ALZ_FCX_P_E4E4_AD_02Feb18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH63.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172641723-1889901 Wb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/409.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD2_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/18_D24062013T2013_1399CBU_0007_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M6_id_MSn_positive.mzML at line 21
index 664 is out of bounds for axis 0 with size 664
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151435895-1924928 4_A11_SNF3_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151435895-1924928 4_A11_SNF3_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gatY_P3D1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (gatY_P3D1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N10_id_MSn_positive.mzML at line 21
index 681 is out of bounds for axis 0 with size 681
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/UGT_DMSO_neg_cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yihT_#1_P4H5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (yihT_#1_P4H5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_54.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0038_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC11_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151401688-1576392 Batch6_NCIH2171_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_F1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130806234-1877636 13C05_rep_C_Oxfendazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130806234-1877636 13C05_rep_C_Oxfendazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125624443-1877092 12G03_rep_D_Bretylium_tosylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125624443-1877092 12G03_rep_D_Bretylium_tosylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_05.mzXML at line 689
Premature end of data in tag peaks line 20235, line 20239, column 3653 (20121114_05.mzXML, line 20239)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202252051-1878302 10F07_rep_A_Guaifenesina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202252051-1878302 10F07_rep_A_Guaifenesina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153342073-1868567 06E08_rep_B_Hydrocortisone_baseb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153342073-1868567 06E08_rep_B_Hydrocortisone_baseb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rutD_P4E7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (rutD_P4E7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122053427-1879763 15F07_rep_B_Benztropine_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122053427-1879763 15F07_rep_B_Benztropine_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B24_id_negative.mzML at line 21
index 235 is out of bounds for axis 0 with size 235
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114751866-1875145 12E10_rep_B_Ketorolac_tromethamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114751866-1875145 12E10_rep_B_Ketorolac_tromethamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202129397-1882238 16G03_rep_D_Loteprednol_etabonateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202129397-1882238 16G03_rep_D_Loteprednol_etabonateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MHB.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD081_P1-B-1_02_2417.mzML at line 689
Opening and ending tag mismatch: binary line 257691 and binaryDataArray, line 257693, column 31 (CD081_P1-B-1_02_2417.mzML, line 257693)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082720/ccms_peak/ST000699/EX00459/Raw data/Amino acids/GCMS/2015-8-18.mzXML at line 689
error parsing attribute name, line 1815, column 15 (2015-8-18.mzXML, line 1815)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121731265-1867083 04D03_rep_C_Indomethacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121731265-1867083 04D03_rep_C_Indomethacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151327987-1576364 Batch7_HOP62_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_A12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/580-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_C6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121123158-1879333 14G10_rep_D_Rifabutinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121123158-1879333 14G10_rep_D_Rifabutinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sucC_#1_P4D5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (sucC_#1_P4D5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121639642-1879570 15F07_rep_A_Benztropine_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121639642-1879570 15F07_rep_A_Benztropine_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152006939-1576694 Batch1_HCC1143_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_04_blood_RESV_oral_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_04_blood_RESV_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoE_P4E11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (nuoE_P4E11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112810823-1922159 4_H8_GPR1_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112810823-1922159 4_H8_GPR1_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR224h1b.mzML at line 689
Opening and ending tag mismatch: binaryDataArray line 203034 and spectrum, line 203088, column 20 (pBpumR224h1b.mzML, line 203088)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.cat_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ldhA_P3C8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ldhA_P3C8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172718053-1889928 NNa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122322175-1879876 15C03_rep_C_Dopamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122322175-1879876 15C03_rep_C_Dopamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130700191-1877583 13H03_rep_C_Articaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130700191-1877583 13H03_rep_C_Articaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201134567-1877792 09H10_rep_B_Cephalothin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201134567-1877792 09H10_rep_B_Cephalothin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091732995-1878505 13D11_rep_D_Lymecyclineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091732995-1878505 13D11_rep_D_Lymecyclineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fucO_P3A4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (fucO_P3A4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101801420-1869629 07H07_rep_D_Mirtazapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101801420-1869629 07H07_rep_D_Mirtazapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100552551-1869045 07E08_rep_A_Tenoxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100552551-1869045 07E08_rep_A_Tenoxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GF3_01_16848.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009628_IBD200_E17_B8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/221.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B15Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210923_LKM_beads_timecourse_60min_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101400913-1869436 07B04_rep_C_Omeprazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101400913-1869436 07B04_rep_C_Omeprazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/148-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124115381-1876424 08H10_rep_D_Etoricoxiba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124115381-1876424 08H10_rep_D_Etoricoxiba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_P_E4E4_AD_IMS_11Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_SERUM_V4_SSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/katG_P3C10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (katG_P3C10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnJ_#1_P4B6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (phnJ_#1_P4B6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092923794-1879061 14F09_rep_C_Sarafloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092923794-1879061 14F09_rep_C_Sarafloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/463-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEP2_20EV_RA6_01_22521.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/382.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD1_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pyrC_P4F9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (pyrC_P4F9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-meoh.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122148033-1879804 15H11_rep_C_Hexachlorophenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122148033-1879804 15H11_rep_C_Hexachlorophenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_MSMS_2022_1003_Michael_leming_liver_neg-0016.mzML at line 689
Premature end of data in tag binary line 27015, line 27015, column 28039 (pooled_MSMS_2022_1003_Michael_leming_liver_neg-0016.mzML, line 27015)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ubiI_#1_P5H7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ubiI_#1_P5H7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111948534-1872600 10F06_rep_C_Sulfamethazine_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111948534-1872600 10F06_rep_C_Sulfamethazine_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007648_032118-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_QC_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_72.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153450240-1577409 Batch4_PANC0813_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B17_id_MSn_positive.mzML at line 21
index 463 is out of bounds for axis 0 with size 463
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample144_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1024.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/740.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_170.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHI10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111438508-1871493 10H07_rep_B_Lithocholic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111438508-1871493 10H07_rep_B_Lithocholic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_61.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P19_id_MSn_positive.mzML at line 21
index 373 is out of bounds for axis 0 with size 373
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHF09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100146312-1868851 06C10_rep_D_Valacyclovir_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100146312-1868851 06C10_rep_D_Valacyclovir_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1319.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1319.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088017/ccms_peak/12302-WT4-15_Treffon-010.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007544_031618-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_69_CNR_50.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_69_CNR_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112942299-1874321 11C10_rep_A_Dimethadioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112942299-1874321 11C10_rep_A_Dimethadioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET118.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET118.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153841996-1577602 Batch6_NCIH526_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAI03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ05241448.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112153602-1921828 3_A10_GPR1_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112153602-1921828 3_A10_GPR1_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K6_id_MSn_negative.mzML at line 21
index 339 is out of bounds for axis 0 with size 339
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2F08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_22_Blood_EtOH_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_22_Blood_EtOH_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_117.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_117.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111455394-1871506 10B06_rep_B_Flecainide_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111455394-1871506 10B06_rep_B_Flecainide_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125446944-1862974 03F04_rep_D_Fenspiride_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125446944-1862974 03F04_rep_D_Fenspiride_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpG_P4A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (atpG_P4A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083179.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152253829-1576826 Batch2_BT20_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/katE_P4A4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (katE_P4A4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_N16_id_MSn_negative.mzML at line 21
index 361 is out of bounds for axis 0 with size 361
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152419570-1576894 Batch2_NCIH226_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_0126_190128142741.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_67_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_67_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_45.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_45.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201956590-1878164 09F05_rep_D_Sulfamerazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201956590-1878164 09F05_rep_D_Sulfamerazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165908150-2227572 PAT50.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/663.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/309.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (32).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/proW_#1_P4C8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (proW_#1_P4C8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/011_20uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113952549-1922729 3_C2_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113952549-1922729 3_C2_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151702118-1576542 Batch7_SF295_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122419988-1879920 15D07_rep_C_Enoxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122419988-1879920 15D07_rep_C_Enoxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150849043-1924629 2_C3_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150849043-1924629 2_C3_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153603342-1577469 Batch4_NCIH1666_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_345.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095538/raw/3dhq_12C_CE20_msAG222_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024765 (3dhq_12C_CE20_msAG222_Aquity_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_62_RIN_49.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_62_RIN_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_414_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152109105-1576743 Batch1_NCIH2030_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F20_id_MSn_negative.mzML at line 21
index 321 is out of bounds for axis 0 with size 321
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123953008-1876359 08F10_rep_D_Diflorasone_Diacetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123953008-1876359 08F10_rep_D_Diflorasone_Diacetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_AM_4.mzXML at line 689
Premature end of data in tag peaks line 2457, line 2461, column 11756 (L_AM_4.mzXML, line 2461)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112429467-1874074 10E07_rep_D_Tinidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112429467-1874074 10E07_rep_D_Tinidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121207214-1879366 14A01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121207214-1879366 14A01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYD021.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/004_Nitrate_Day7_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/916.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112851429-1874282 11D09_rep_A_Iocetamic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112851429-1874282 11D09_rep_A_Iocetamic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlA3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlA3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114343358-1874952 12F03_rep_A_S(-)Eticlopride_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114343358-1874952 12F03_rep_A_S(-)Eticlopride_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ2_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094151/raw/Bruker QTof micrOTOF QII d7-d28_mzML/MeOH_blank2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101742448-1869613 07F08_rep_D_Piracetama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101742448-1869613 07F08_rep_D_Piracetama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086644/updates/2021-05-17_oligegilo_028995c2/raw/EMix_50MeCN2ppmfrsk_6ul_RA6_01_22312.mzML at line 689
Specification mandates value for attribute cvRE, line 287131, column 14 (EMix_50MeCN2ppmfrsk_6ul_RA6_01_22312.mzML, line 287131)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151913727-1576651 Batch7_NCIH510_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD5_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112242035-1921870 3_D3_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112242035-1921870 3_D3_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/490-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113601042-1874579 11B08_rep_C_Deflazacortb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113601042-1874579 11B08_rep_C_Deflazacortb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112827365-1874263 11E05_rep_A_Procyclidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112827365-1874263 11E05_rep_A_Procyclidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009550_IBD200_E12_B8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_45.mzXML at line 689
Premature end of data in tag peaks line 19980, line 19984, column 11843 (20121114_45.mzXML, line 19984)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM4O001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoI_P3E2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (nuoI_P3E2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202044864-1878202 09C04_rep_D_Zileutona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202044864-1878202 09C04_rep_D_Zileutona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153819668-1577583 Batch6_HCC1806_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_36_Blank.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_36_Blank.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/675.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM5A012.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121107555-1879321 14E04_rep_D_Isosorbide_mononitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121107555-1879321 14E04_rep_D_Isosorbide_mononitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_H6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152654846-1577022 Batch2_PC3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152110341-1576744 Batch1_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123424978-1876097 08A11_rep_B_Nicotinamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123424978-1876097 08A11_rep_B_Nicotinamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_rerun_G1_01_11767.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sufD_P3D5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (sufD_P3D5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_65_NOR_47.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_65_NOR_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093044112-1879120 14D07_rep_C_Ciprofibratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093044112-1879120 14D07_rep_C_Ciprofibratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_09_leg_skin_control_skin_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_09_leg_skin_control_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_64.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_64.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD1_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc2_T24_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223102997-1869972 01B06_rep_A_Heptaminol hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223102997-1869972 01B06_rep_A_Heptaminol hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR23h1a.mzML at line 689
Specification mandates value for attribute couP8iegT, line 59847, column 40 (pMIBSDR23h1a.mzML, line 59847)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114012682-1874781 11E08_rep_D_(-)_-Levobunolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114012682-1874781 11E08_rep_D_(-)_-Levobunolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/proB_P3C1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (proB_P3C1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165758753-2227508 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated8hD3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated8hD3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007693_032218-5CRP2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample34n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152205919-1576788 Batch1_HCC70_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_A4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/001_Nitrate_Day14_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_18_Liver_CMC_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 88 (Mouse_18_Liver_CMC_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201938566-1882152 16D10_rep_D_Dofetilideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201938566-1882152 16D10_rep_D_Dofetilideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007660_032118-1Thr4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2F02P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD2_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysM_P5F7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (cysM_P5F7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150153632-1864684 02D09_rep_B_Nalbuphine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150153632-1864684 02D09_rep_B_Nalbuphine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153832569-1577594 Batch6_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/NEC2_MS_RA1_01_22481.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dtpA_P3G1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (dtpA_P3G1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123739468-1876252 08C01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123739468-1876252 08C01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223258871-1870059 01F07_rep_B_Sulpiridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223258871-1870059 01F07_rep_B_Sulpiridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201905073-1882126 16D03_rep_D_Pidotimodb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201905073-1882126 16D03_rep_D_Pidotimodb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/clsA_P3F12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (clsA_P3F12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/187-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/guaD_P4G6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (guaD_P4G6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpT_P5D10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (glpT_P5D10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101518696-1869497 07C10_rep_C_Bromperidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101518696-1869497 07C10_rep_C_Bromperidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H15_id_MSn_negative.mzML at line 21
index 330 is out of bounds for axis 0 with size 330
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111559717-1871555 10B07_rep_B_Cefazolin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111559717-1871555 10B07_rep_B_Cefazolin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD4_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151659453-1576540 Batch7_7860_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_HT_071_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123437258-1876107 08C06_rep_B_Voriconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123437258-1876107 08C06_rep_B_Voriconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_16_Blood_CMC_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 88 (Mouse_16_Blood_CMC_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092131841-1878692 14H06_rep_A_Ronidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092131841-1878692 14H06_rep_A_Ronidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_2_Blood_HO_control_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_2_Blood_HO_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/473-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_260.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152804179-1577080 Batch3_HT1197_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151427962-1576414 Batch6_CORL279_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD5_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/293.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G5_id.mzML at line 21
index 619 is out of bounds for axis 0 with size 619
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151213248-1924805 3_H7_SNF3_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151213248-1924805 3_H7_SNF3_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151205360-1924798 3_F2_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151205360-1924798 3_F2_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1876.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1876.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/223.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gudP_#1_P4D12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (gudP_#1_P4D12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_15_NOR_30.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_15_NOR_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/moaE_P4H10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (moaE_P4H10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125712140-1863092 03E08_rep_D_Tibolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125712140-1863092 03E08_rep_D_Tibolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223956197-2227736 Healthy6.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J17_id_MSn_positive.mzML at line 21
index 349 is out of bounds for axis 0 with size 349
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100635908-1869080 07A09_rep_A_Dosulepin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100635908-1869080 07A09_rep_A_Dosulepin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150359000-1924381 1_G1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150359000-1924381 1_G1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N1_id_negative.mzML at line 21
index 259 is out of bounds for axis 0 with size 259
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201421139-1881912 16F06_rep_C_Rasagilineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201421139-1881912 16F06_rep_C_Rasagilineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122321573-1867362 04C05_rep_D_Dyclonine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122321573-1867362 04C05_rep_D_Dyclonine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdpC_P3C7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (kdpC_P3C7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GF12_01_17217.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114841198-1875185 12D06_rep_B_Lorglumide_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114841198-1875185 12D06_rep_B_Lorglumide_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control92_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control92_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_76_AC+_20.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200949069-1877715 09G05_rep_B_Bromoprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200949069-1877715 09G05_rep_B_Bromoprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HaCaT_3_RESV_0uM_NEG.mzXML at line 689
attributes construct error, line 38, column 81 (HaCaT_3_RESV_0uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152125409-1576756 Batch1_HCC1937_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/004_Nitrate_Day17_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D6_id_MSn_positive.mzML at line 21
index 585 is out of bounds for axis 0 with size 585
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNQ329_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114125240-1922811 4_H10_STE2_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114125240-1922811 4_H10_STE2_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8E12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_121.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yihV_#1_P4F9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (yihV_#1_P4F9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD3_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210119_LKM_yeast_MeOH_control_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180915_ES_H3K_batch2_repD_20.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_C10_id_positive.mzML at line 21
index 334 is out of bounds for axis 0 with size 334
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113727233-1874648 11A10_rep_C_Dichlorphenamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113727233-1874648 11A10_rep_C_Dichlorphenamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112302151-1873619 10F02_rep_D_Alclometasone_dipropionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112302151-1873619 10F02_rep_D_Alclometasone_dipropionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/365.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201008273-1881723 16D04_rep_B_Benidipine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201008273-1881723 16D04_rep_B_Benidipine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150336829-1924362 1_A10_RGT2_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150336829-1924362 1_A10_RGT2_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample194.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152905313-1577132 Batch3_EPLC272H_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD2_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET113.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET113.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/TM-plasma-VLDL-15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H5_id_MSn_negative.mzML at line 21
index 300 is out of bounds for axis 0 with size 300
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112931809-1874313 11B03_rep_A_Cromolyn_disodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112931809-1874313 11B03_rep_A_Cromolyn_disodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/254.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124018229-1876379 08F04_rep_D_Diosminb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124018229-1876379 08F04_rep_D_Diosminb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEE1_MS_RA4_01_22727.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121455164-1866961 04E10_rep_B_Pyrilamine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121455164-1866961 04E10_rep_B_Pyrilamine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100851616-1869189 07H09_rep_A_Gliclazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100851616-1869189 07H09_rep_A_Gliclazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E6_id_MSn_positive.mzML at line 21
index 396 is out of bounds for axis 0 with size 396
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114304297-1874920 12A05_rep_A_Megluminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114304297-1874920 12A05_rep_A_Megluminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092121624-1878684 14E03_rep_A_(-)-Eseroline_fumarate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092121624-1878684 14E03_rep_A_(-)-Eseroline_fumarate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007628_032118-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112545197-1874134 11A08_rep_A_Chloropyramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112545197-1874134 11A08_rep_A_Chloropyramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYB008.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30067 - GI-14-429.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ptsI_#4_P5D8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ptsI_#4_P5D8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample128_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124405148-1876562 09B04_rep_A_Mepenzolate_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124405148-1876562 09B04_rep_A_Mepenzolate_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/LiLi-1d.mzXML at line 689
Premature end of data in tag peaks line 1518, line 1522, column 7672 (LiLi-1d.mzXML, line 1522)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151045485-1924729 3_D4_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151045485-1924729 3_D4_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET97.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET97.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arnC_P3G7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (arnC_P3G7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_130.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124540573-1862419 03F05_rep_B_Gemfibrozila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124540573-1862419 03F05_rep_B_Gemfibrozila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100306983-1868914 06D06_rep_D_Cyclosporin_Ab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100306983-1868914 06D06_rep_D_Cyclosporin_Ab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222720807-1869805 01C08_rep_A_Doxylamine succinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222720807-1869805 01C08_rep_A_Doxylamine succinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075411.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample132.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202137076-1882244 16B07_rep_D_Tegafurb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202137076-1882244 16B07_rep_D_Tegafurb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124142539-1876446 08B02_rep_D_Tetracaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124142539-1876446 08B02_rep_D_Tetracaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_C2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121140467-1879346 14B03_rep_D_Iopanoic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121140467-1879346 14B03_rep_D_Iopanoic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151148252-1576281 Batch5_LUDLU1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_C1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/451.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_C4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223832510-1870315 01B05_rep_C_Sulfacetamide sodic hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223832510-1870315 01B05_rep_C_Sulfacetamide sodic hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123055012-1867722 05A04_rep_B_Chlorpropamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123055012-1867722 05A04_rep_B_Chlorpropamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152944225-1577165 Batch5_NCIH2347_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/CORN_AAW2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152243724-1868061 05F10_rep_D_Nefazodone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152243724-1868061 05F10_rep_D_Nefazodone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S05_0126_190128150058.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125446694-1877017 12F08_rep_D_Dehydroisoandosterone_3-acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125446694-1877017 12F08_rep_D_Dehydroisoandosterone_3-acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092651053-1878942 14F01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092651053-1878942 14F01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample015_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222738418-1869818 01C11_rep_A_Antipyrine, 4-hydroxyb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222738418-1869818 01C11_rep_A_Antipyrine, 4-hydroxyb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122409437-1879912 15D06_rep_C_Triclosana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122409437-1879912 15D06_rep_C_Triclosana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224400135-1870570 01D10_rep_D_Diflunisalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224400135-1870570 01D10_rep_D_Diflunisalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_190.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150816760-1864979 02H07_rep_D_Ivermectinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150816760-1864979 02H07_rep_D_Ivermectinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/004_1018_2_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153111358-1868449 06A08_rep_B_Adamantamine_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153111358-1868449 06A08_rep_B_Adamantamine_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125037767-1862773 03H10_rep_C_Orphenadrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125037767-1862773 03H10_rep_C_Orphenadrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223344444-1870094 01C11_rep_B_Antipyrine, 4-hydroxyb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223344444-1870094 01C11_rep_B_Antipyrine, 4-hydroxyb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/111_97.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GH7_01_16883.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_C12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/016_100uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223343119-1870093 01C11_rep_B_Antipyrine, 4-hydroxya.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223343119-1870093 01C11_rep_B_Antipyrine, 4-hydroxya.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201150234-1877803 09F05_rep_B_Sulfamerazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201150234-1877803 09F05_rep_B_Sulfamerazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122026414-1867221 04G02_rep_C_Lisinoprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122026414-1867221 04G02_rep_C_Lisinoprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_125b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/menH_#1_P4C6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (menH_#1_P4C6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152723441-1577046 Batch2_OVCAR3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152459386-1576926 Batch1_HCC1143_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD2_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125054346-1862786 03B02_rep_C_Tranexamic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125054346-1862786 03B02_rep_C_Tranexamic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/glycine_betaine.mzXML at line 689
Premature end of data in tag peaks line 5687, line 5691, column 24040 (glycine_betaine.mzXML, line 5691)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_rerun_A1_BA4_01_12032.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113856811-1874720 11A03_rep_D_Methazolamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113856811-1874720 11A03_rep_D_Methazolamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210505_LKM_beads30min_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_219.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw5_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/astB_P4B11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (astB_P4B11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/efeB_P3C7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (efeB_P3C7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD4_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dkgA_P3B9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (dkgA_P3B9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_HT_027_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145625746-1863943 02E09_rep_A_Spironolactonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145625746-1863943 02E09_rep_A_Spironolactonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHB001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152727086-1577049 Batch3_KP4_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control235_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control235_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112246145-1873606 10E11_rep_D_Isopropamide_iodideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112246145-1873606 10E11_rep_D_Isopropamide_iodideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007621_032118-Unst6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153627964-1868699 06F09_rep_C_Melatoninb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153627964-1868699 06F09_rep_C_Melatoninb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample172.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130741897-1877616 13D07_rep_C_Prothionamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130741897-1877616 13D07_rep_C_Prothionamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152949389-1868389 06B03_rep_A_Amifostineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152949389-1868389 06B03_rep_A_Amifostineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150415450-1864792 02G03_rep_C_Dipyridamolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150415450-1864792 02G03_rep_C_Dipyridamolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_C3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR324h1a.mzML at line 689
Opening and ending tag mismatch: binaryDataArray line 281952 and binary, line 281953, column 12558 (pBpumR324h1a.mzML, line 281953)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_E1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150437485-1864809 02G02_rep_C_Verapamil hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150437485-1864809 02G02_rep_C_Verapamil hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_22.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_22.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153518487-1577432 Batch4_977_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152009465-1576696 Batch1_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152131739-1576761 Batch1_MDAMB436_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124843897-1862682 03E11_rep_B_Fenbendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124843897-1862682 03E11_rep_B_Fenbendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201946178-1878156 09D01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201946178-1878156 09D01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085488/updates/2020-06-18_viqqikurnianda_b7ec00f4/raw/RYK-GNPS-References/200618_4-isothioneopupukaenane.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111642141-1921561 1_A7_GAP1_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111642141-1921561 1_A7_GAP1_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_64.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_F15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample006_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD6_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample161_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112736199-1922128 4_B10_GPR1_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112736199-1922128 4_B10_GPR1_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/rhcys_luxS_P3H12_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 552, column 10003468 (rhcys_luxS_P3H12_Aquity_pos.mzXML, line 552)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074705.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_5_B_rep_2_B-C1_1_5652.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111607686-1871561 10F02_rep_B_Alclometasone_dipropionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111607686-1871561 10F02_rep_B_Alclometasone_dipropionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L63.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L63.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/5.3_ITA _VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample183_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case186_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case186_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC13_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114657884-1875103 12H09_rep_B_Urosiolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114657884-1875103 12H09_rep_B_Urosiolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1040.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082912/ccms_peak/15NEGMSMS20_25_30eV.mzML at line 689
Premature end of data in tag binary line 11084, line 11084, column 109671 (15NEGMSMS20_25_30eV.mzML, line 11084)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112752972-1922143 4_B4_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112752972-1922143 4_B4_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202507672-1878409 10D10_rep_A_Methacholine_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202507672-1878409 10D10_rep_A_Methacholine_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/387.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acrE_P3D3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (acrE_P3D3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_76.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_76.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201112835-1877776 09F09_rep_B_Tetrahydrozoline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201112835-1877776 09F09_rep_B_Tetrahydrozoline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L13_id_negative.mzML at line 21
index 240 is out of bounds for axis 0 with size 240
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A21_id.mzML at line 21
index 576 is out of bounds for axis 0 with size 576
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1373.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1373.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083191.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5A012.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/412.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081039/ccms_peak/raw/MTBLS293/mtab_R1_Dyhram_2014_1017_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151359243-1576390 Batch7_KM12_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/584.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152556060-1576973 Batch1_7860_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E5_id_MSn_negative.mzML at line 21
index 296 is out of bounds for axis 0 with size 296
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_D6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_53.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111736784-1921608 1_H3_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111736784-1921608 1_H3_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150538886-1864857 02G11_rep_C_Dihydroergotamine tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150538886-1864857 02G11_rep_C_Dihydroergotamine tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112814293-1922162 4_E3_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112814293-1922162 4_E3_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GA12_01_16785.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E6_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111717195-1921591 1_B11_GAP1_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111717195-1921591 1_B11_GAP1_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224105030-1870432 01H06_rep_D_Adiphenine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224105030-1870432 01H06_rep_D_Adiphenine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114005244-1874775 11B04_rep_D_Bucladesine_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114005244-1874775 11B04_rep_D_Bucladesine_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009466_IBD200_E8_A3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_G9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112027539-1873016 10A10_rep_C_Sulfanilamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112027539-1873016 10A10_rep_C_Sulfanilamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-3-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2G12_160528191147.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/009_CRa_H9M5_M470_Blank_03_low_pos.mzXML at line 689
Premature end of data in tag peaks line 11439, line 11443, column 32248 (009_CRa_H9M5_M470_Blank_03_low_pos.mzXML, line 11443)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_225.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_G9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152523515-1576946 Batch2_LOXIMVI_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190340545-1889802 Na.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223037828-1869953 01G01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223037828-1869953 01G01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121505693-1879499 15H10_rep_A_Acetylsalicylic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121505693-1879499 15H10_rep_A_Acetylsalicylic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125145702-1876879 12C08_rep_C_S-(+)-ibuprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125145702-1876879 12C08_rep_C_S-(+)-ibuprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007674_032118-1CRP2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114034896-1874799 11E01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114034896-1874799 11E01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2G06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114006975-1922742 3_G8_STE2_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114006975-1922742 3_G8_STE2_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hC3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hC3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113247066-1874461 11H08_rep_B_Scopolamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113247066-1874461 11H08_rep_B_Scopolamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-23.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-23.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_C4_id_negative.mzML at line 21
index 265 is out of bounds for axis 0 with size 265
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152453390-1576921 Batch2_IGROV1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150015085-1864127 02F04_rep_B_Hydroxyzine dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150015085-1864127 02F04_rep_B_Hydroxyzine dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/manY_P4C2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (manY_P4C2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125341867-1862921 03C03_rep_D_Levamisole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125341867-1862921 03C03_rep_D_Levamisole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_1_B_rep_3_B-E4_1_5676.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_88.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114728853-1875127 12F02_rep_B_Propofolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114728853-1875127 12F02_rep_B_Propofolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083774/ccms_peak/Metabolomics/Pos_59.mzML at line 21
index 279 is out of bounds for axis 0 with size 279
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample204_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153956743-1577665 Batch7_EKVX_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220222_LKM_Yeast_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4A04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114354497-1874961 12E11_rep_A_Protriptyline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114354497-1874961 12E11_rep_A_Protriptyline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151852082-1576633 Batch7_M14_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201601475-1877986 09B08_rep_C_Benzamil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201601475-1877986 09B08_rep_C_Benzamil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/209-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw6_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113349388-1922413 2_B7_IZH2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113349388-1922413 2_B7_IZH2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argI_P3B5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (argI_P3B5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_E12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rfbA_P4H6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (rfbA_P4H6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-3-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079679/ccms_peak/SputumvsFood/243_FF5_pH5.5_BB7_01_18604.mzXML at line 689
Extra content at the end of the document, line 30729, column 1 (243_FF5_pH5.5_BB7_01_18604.mzXML, line 30729)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_A8_id_positive.mzML at line 21
index 346 is out of bounds for axis 0 with size 346
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112434522-1874078 10A02_rep_D_Althiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112434522-1874078 10A02_rep_D_Althiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224134852-1870455 01H07_rep_D_Dibucainea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224134852-1870455 01H07_rep_D_Dibucainea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151840258-1576623 Batch5_HCC1187_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample087.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112946094-1874324 11F04_rep_B_Liothyroninea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112946094-1874324 11F04_rep_B_Liothyroninea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007636_032118-0.01Thr3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151020530-1924708 3_G11_SNF3_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151020530-1924708 3_G11_SNF3_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD5_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GE9_01_17200.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B18_id_negative.mzML at line 21
index 275 is out of bounds for axis 0 with size 275
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151807897-1576596 Batch7_UMC11_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223811127-2227645 PAT39.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2E09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123500570-1876126 08C07_rep_B_Alfacalcidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123500570-1876126 08C07_rep_B_Alfacalcidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD2_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201415911-1877910 09B07_rep_C_Lanatoside_Ca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201415911-1877910 09B07_rep_C_Lanatoside_Ca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201201196-1881807 16C01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201201196-1881807 16C01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dmlA_P3E12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (dmlA_P3E12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_25.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_25.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P20_id_MSn_negative.mzML at line 21
index 355 is out of bounds for axis 0 with size 355
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153420650-1577385 Batch4_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H3_id_MSn_positive.mzML at line 21
index 527 is out of bounds for axis 0 with size 527
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125554728-1863029 03B04_rep_D_Tranylcypromine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125554728-1863029 03B04_rep_D_Tranylcypromine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121544190-1879527 15D03_rep_A_Mesnab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121544190-1879527 15D03_rep_A_Mesnab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Acido_24297_M1+.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc1_PBST4_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114214347-1922855 4_B9_STE2_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114214347-1922855 4_B9_STE2_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145618266-1863937 02E10_rep_A_Pirenzepine dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145618266-1863937 02E10_rep_A_Pirenzepine dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D15_id_MSn_positive.mzML at line 21
index 703 is out of bounds for axis 0 with size 703
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152531750-1576953 Batch1_CALU1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223516089-1870164 01D09_rep_B_Hexamethonium dibromide dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223516089-1870164 01D09_rep_B_Hexamethonium dibromide dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_176.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112921131-1874305 11E01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112921131-1874305 11E01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_104.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123017860-1875898 08G01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123017860-1875898 08G01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrdE_P4F8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (nrdE_P4F8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/modC_P3G11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (modC_P3G11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150528507-1864849 02G10_rep_C_Thioproperazine dimesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150528507-1864849 02G10_rep_C_Thioproperazine dimesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_18092931_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-080_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153316698-1577333 Batch4_SW780_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151806681-1576595 Batch3_PANC1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_3_RESV_200uM_POS.mzXML at line 689
attributes construct error, line 38, column 83 (C2C12_3_RESV_200uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211206_LKM_mb_beads_rapid_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/cmp_cmk_P3B6_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024914 (cmp_cmk_P3B6_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/657.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151545900-1576478 Batch7_HCC38_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00077179.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_A2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152442172-1576912 Batch1_HCC1806_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F24_id.mzML at line 21
index 587 is out of bounds for axis 0 with size 587
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101955359-1869721 99a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101955359-1869721 99a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092335832-1878790 14G05_rep_A_Clonixin_Lysinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092335832-1878790 14G05_rep_A_Clonixin_Lysinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007622_032118-Unst6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/446.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153221359-1577288 Batch4_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097448/ccms_peak/001__20220922__GC1410__50%MeOH__dil.mzML at line 689
Premature end of data in tag binary line 11665, line 11665, column 1478717 (001__20220922__GC1410__50%MeOH__dil.mzML, line 11665)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151929045-1576664 Batch7_NCIH510_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O7_id_MSn_positive.mzML at line 21
index 557 is out of bounds for axis 0 with size 557
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007701_032218-5CRP6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/2_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112726081-1922119 4_H3_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112726081-1922119 4_H3_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/808.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C6_id_MSn_positive.mzML at line 21
index 536 is out of bounds for axis 0 with size 536
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ5_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample020_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223743592-2227621 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_264_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152723441-1577046 Batch2_OVCAR3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122745628-1875779 08A08_rep_A_Itraconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122745628-1875779 08A08_rep_A_Itraconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121515036-1866976 04A09_rep_B_Clonidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121515036-1866976 04A09_rep_B_Clonidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_10mM_D_AC_AS_Pos.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_10mM_D_AC_AS_Pos.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N22_id_MSn_negative.mzML at line 21
index 360 is out of bounds for axis 0 with size 360
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/ka viqqi/GNPS-Nudibranch-20210911T015333Z-001/GNPS-Nudibranch/Data-MS2/Converted/200609A_sample_36.mzXML at line 689
Premature end of data in tag peaks line 120673, line 120677, column 16951 (200609A_sample_36.mzXML, line 120677)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130705171-1877587 13D10_rep_C_Proguanil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130705171-1877587 13D10_rep_C_Proguanil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150602036-1924485 1_F7_RGT2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150602036-1924485 1_F7_RGT2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike6_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_257.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150847862-1924628 2_B9_RGT2_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150847862-1924628 2_B9_RGT2_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151236526-1576321 Batch5_PC9_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6A03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control234_pos.mzXML at line 689
attributes construct error, line 37, column 73 (Control234_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I11_id_MSn_positive.mzML at line 21
index 542 is out of bounds for axis 0 with size 542
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_A7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151318308-1924861 3_C7_SNF3_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151318308-1924861 3_C7_SNF3_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frlA_P3F6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (frlA_P3F6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150727956-1864941 02D06_rep_C_Haloperidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150727956-1864941 02D06_rep_C_Haloperidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200909809-1877686 09F04_rep_B_Promazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200909809-1877686 09F04_rep_B_Promazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O17_id_MSn_negative.mzML at line 21
index 340 is out of bounds for axis 0 with size 340
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H9_id_MSn_negative.mzML at line 21
index 296 is out of bounds for axis 0 with size 296
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113354009-1922417 2_A7_IZH2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113354009-1922417 2_A7_IZH2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Pool_2_B-A2_1_5501.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114609979-1875066 12F08_rep_A_Dehydroisoandosterone_3-acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114609979-1875066 12F08_rep_A_Dehydroisoandosterone_3-acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121052626-1879310 14H11_rep_D_Nadifloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121052626-1879310 14H11_rep_D_Nadifloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/415.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pncA_P4C11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (pncA_P4C11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_135a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Geotrichum_candidum_BW138A_02.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_157.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD3_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007690_032218-5CRP1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130002094-1863235 04D04_rep_A_Cortisoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130002094-1863235 04D04_rep_A_Cortisoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E16_id_MSn_negative.mzML at line 21
index 337 is out of bounds for axis 0 with size 337
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B09Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/304.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_33_CNR_20.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_33_CNR_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C7_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5D07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_2_RESV_0uM_NEG.mzXML at line 689
attributes construct error, line 38, column 81 (C2C12_2_RESV_0uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165719378-2227472 PAT47.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I12_id_MSn_negative.mzML at line 21
index 331 is out of bounds for axis 0 with size 331
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_23_Liver_EtOH_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_23_Liver_EtOH_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/669.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152208438-1576790 Batch2_NCIH522_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc054_pos.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc054_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124104226-1876415 08E02_rep_D_Tranilastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124104226-1876415 08E02_rep_D_Tranilastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153759550-1868773 06A09_rep_C_Butoconazole_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153759550-1868773 06A09_rep_C_Butoconazole_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_E7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/111-4_idMsMs_25min_30eV_GE4_01_4251.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111847643-1872071 10C05_rep_C_Flunixin_meglumineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111847643-1872071 10C05_rep_C_Flunixin_meglumineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/425.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_sp_WIAJ11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI6_2_4_1_873.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P9_id_MSn_positive.mzML at line 21
index 682 is out of bounds for axis 0 with size 682
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113552183-1922519 2_A1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113552183-1922519 2_A1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample181.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211005_LKM_beads_mb_HPB_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223806587-2227641 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J14_id_MSn_negative.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample007_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person22_plasma_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person22_plasma_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_E10_id_negative.mzML at line 21
index 257 is out of bounds for axis 0 with size 257
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113144238-1874411 11E05_rep_B_Procyclidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113144238-1874411 11E05_rep_B_Procyclidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0021_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0021_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_F1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_56.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112108428-1873048 10G04_rep_C_Clofibric_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112108428-1873048 10G04_rep_C_Clofibric_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075481.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152057472-1576734 Batch1_NCIH1975_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153441656-1577402 Batch4_SW780_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_332.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_130.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200930238-1881695 16H02_rep_A_Cisatracurium_besylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200930238-1881695 16H02_rep_A_Cisatracurium_besylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_A4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079788/ccms_peak/Human_GITract_organic_renamed_mzxml_march2016/03262016_human.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223547093-1870188 01B10_rep_B_Captoprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223547093-1870188 01B10_rep_B_Captoprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201325359-1877873 09C08_rep_B_Acefyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201325359-1877873 09C08_rep_B_Acefyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2A07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_A9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_A9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LEA2_40EV_RA2_01_22557.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151141874-1576276 Batch5_PC14PE6_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_9_Dorsal_skin_Ma_control_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_9_Dorsal_skin_Ma_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201253264-1881846 16G04_rep_B_Tolterodine_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201253264-1881846 16G04_rep_B_Tolterodine_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_66_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_66_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control233_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control233_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_sample11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092830099-1879018 14D07_rep_B_Ciprofibratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092830099-1879018 14D07_rep_B_Ciprofibratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_5_B_rep_3_B-F1_1_5869.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150708800-1864926 02A03_rep_C_Fulvestranta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150708800-1864926 02A03_rep_C_Fulvestranta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151033415-1865085 02H05_rep_D_Josamycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151033415-1865085 02H05_rep_D_Josamycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/124-4_MsMs_25min_40eV_GE5_01_4134.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/323.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD5_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_131_1A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153013787-1577189 Batch3_MGHU3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V3_EDTAk3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122402795-1867395 04H11_rep_D_Fluphenazine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122402795-1867395 04H11_rep_D_Fluphenazine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GD7_01_16824.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lysP_P4D6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (lysP_P4D6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEE2_20EV_RA6_01_22593.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K21_id.mzML at line 21
index 543 is out of bounds for axis 0 with size 543
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case41_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case41_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_7_Dorsal_skin_Ma_control_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_7_Dorsal_skin_Ma_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122805473-1867592 05H09_rep_A_Oxantel_pamoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122805473-1867592 05H09_rep_A_Oxantel_pamoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223052565-1869964 01B11_rep_A_Minoxidilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223052565-1869964 01B11_rep_A_Minoxidilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152203289-1576786 Batch2_NCIH2172_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate11/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125616538-1877086 12C09_rep_D_Ethynodiol_diacetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125616538-1877086 12C09_rep_D_Ethynodiol_diacetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/PDI-flfl-liver-52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124911605-1876765 12G03_rep_C_Bretylium_tosylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124911605-1876765 12G03_rep_C_Bretylium_tosylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180501_ES_H3K_batch4_repC_62.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/161-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092266/ccms_parameters/params.xml at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124120111-1876428 08G09_rep_D_Benazepril_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124120111-1876428 08G09_rep_D_Benazepril_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153904661-1577621 Batch6_HCC1806_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098254/updates/2025-06-18_chitival_73cdffbf/raw/GM(-)-LCMS-24M008-RD-GNPS/GM(-)-24M008-G3_012.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125328196-1862910 03E06_rep_C_Tolfenamic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125328196-1862910 03E06_rep_C_Tolfenamic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNS615_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/706.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200851272-1881666 16C03_rep_A_Donepezil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200851272-1881666 16C03_rep_A_Donepezil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acpT_P4E12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (acpT_P4E12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124905014-1876760 12F09_rep_C_Benserazide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124905014-1876760 12F09_rep_C_Benserazide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223447177-1870142 01H03_rep_B_Imipramine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223447177-1870142 01H03_rep_B_Imipramine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152000467-1576689 Batch1_NCIH2073_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122540330-1879982 15G01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122540330-1879982 15G01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acpT_P4E12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (acpT_P4E12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000091324/peak/diet-neg/inj-25-lipids-120918-neg-QC-24.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O12_id_MSn_positive.mzML at line 21
index 691 is out of bounds for axis 0 with size 691
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample185_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152819596-1577093 Batch3_HT1376_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Geotrichum_candidum_BW138A_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130104480-1877305 13D09_rep_B_Zuclopenthixol_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130104480-1877305 13D09_rep_B_Zuclopenthixol_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_P_E2E3_AD_IMS_11Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/C48_I_ESI+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112228558-1873592 10F01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112228558-1873592 10F01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemD_P3H1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (hemD_P3H1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152629753-1577001 Batch2_NCIH647_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_C11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O18_id_MSn_negative.mzML at line 21
index 294 is out of bounds for axis 0 with size 294
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_0124.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTH009.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B21_id_MSn_positive.mzML at line 21
index 607 is out of bounds for axis 0 with size 607
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ7_8 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H12_id_MSn_positive.mzML at line 21
index 468 is out of bounds for axis 0 with size 468
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Vibrio_nigripulchritudo_S2604_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBmegR23h1b.mzML at line 689
Opening and ending tag mismatch: binary line 249550 and spectrum, line 249600, column 20 (pBmegR23h1b.mzML, line 249600)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202352266-1878350 10E02_rep_A_Butambena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202352266-1878350 10E02_rep_A_Butambena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202155928-1882259 16C01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202155928-1882259 16C01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086441/ccms_peak/1283.2_SWBi_EtOAc_GD3_01_2647.mzML at line 689
Premature end of data in tag binary line 100, line 100, column 579820 (1283.2_SWBi_EtOAc_GD3_01_2647.mzML, line 100)
Error processing file: /data/datasets/server/MassIVE/MSV000096940/peak/15_Human fecal community screening for EGT metabolism_targeted_HF12_TUA and 3-(2-thione-imidazol-4-yl)-propionic acid quantification_2.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix7_160527214834.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151154080-1576286 Batch5_NCIH446_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150407325-1924388 1_B3_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150407325-1924388 1_B3_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121321878-1879421 15G03_rep_A_Bosentanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121321878-1879421 15G03_rep_A_Bosentanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_23_male_2022_1017_Michael_neg-0.0047.mzML at line 689
Premature end of data in tag binary line 18439, line 18439, column 62985 (4_23_male_2022_1017_Michael_neg-0.0047.mzML, line 18439)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_11_AC+_30.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152207198-1576789 Batch1_HCC70_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ5_6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132923324-1733902 1pool Wound5D 1 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cmtA_P3A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (cmtA_P3A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_19080521_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroE_P4H2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (aroE_P4H2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153957958-1577666 Batch6_DU4475_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101123592-1869310 07C11_rep_B_Cyclizine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101123592-1869310 07C11_rep_B_Cyclizine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L59.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L59.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/524-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124215053-1876472 08C09_rep_D_Galanthamine_hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124215053-1876472 08C09_rep_D_Galanthamine_hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ldhA_P3C8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ldhA_P3C8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201639417-1882013 16A01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201639417-1882013 16A01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152639294-1577009 Batch1_7860_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125210336-1876898 12E07_rep_C_Idazoxan_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125210336-1876898 12E07_rep_C_Idazoxan_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoB_#1_P5A8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (nuoB_#1_P5A8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150944654-1924677 2_A5_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150944654-1924677 2_A5_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_blank_24.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_blank_24.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GD2_01_11667.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180417_ES_batch6_pWT_b.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/214-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130304532-1877398 13B02_rep_B_Remoxipride_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130304532-1877398 13B02_rep_B_Remoxipride_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD4_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121159284-1879360 14D03_rep_D_Lansoprazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121159284-1879360 14D03_rep_D_Lansoprazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/039_CRa_H9M5_M470_C03_K2_high_pos.mzXML at line 689
Premature end of data in tag peaks line 20065, line 20069, column 28149 (039_CRa_H9M5_M470_C03_K2_high_pos.mzXML, line 20069)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B13_id_MSn_negative.mzML at line 21
index 321 is out of bounds for axis 0 with size 321
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD2_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151829384-1576614 Batch7_UACC257_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_060ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/18/f8031f9e7992c51b8ac11d4f0b1c79/input_file/QC_20170127_060ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_H4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121704004-1879589 15E04_rep_A_Aripiprazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121704004-1879589 15E04_rep_A_Aripiprazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122054718-1879764 15F03_rep_B_Atorvastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122054718-1879764 15F03_rep_B_Atorvastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095819/raw/202312_208_PA02_10ppb_1uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151617703-1925009 4_F3_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151617703-1925009 4_F3_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample125_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151240197-1924828 3_C9_SNF3_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151240197-1924828 3_C9_SNF3_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folB_P3A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (folB_P3A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-faux (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_112a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152155686-1576780 Batch1_NCIH1703_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223911880-1870346 01E03_rep_C_Moxisylyte hydrochorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223911880-1870346 01E03_rep_C_Moxisylyte hydrochorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114126342-1922812 4_D8_STE2_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114126342-1922812 4_D8_STE2_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHL23.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_007ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/87/b03d65d75f4155a473039f5defb09c/input_file/QC_20170209_007ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-2-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_131b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malY_#3_P3G7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (malY_#3_P3G7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample164.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113959044-1874770 11E05_rep_D_Procyclidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113959044-1874770 11E05_rep_D_Procyclidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101754130-1869623 07E08_rep_D_Tenoxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101754130-1869623 07E08_rep_D_Tenoxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_H_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_G1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153250941-1577312 Batch4_SW156_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152154385-1576779 Batch2_NCIH2291_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007703_032218-5CRP6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample133.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfG_#1_P3A12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (hyfG_#1_P3A12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151448089-1576431 Batch6_RPMI8226_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122517879-1867456 05C02_rep_A_Furosemidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122517879-1867456 05C02_rep_A_Furosemidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_17_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBsubR131_5h2a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_192.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124300835-1876509 08F05_rep_D_Carbidopab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124300835-1876509 08F05_rep_D_Carbidopab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121421629-1866935 04G11_rep_B_Mebeverine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121421629-1866935 04G11_rep_B_Mebeverine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD3_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L11 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mhpT_P3H6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (mhpT_P3H6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092958546-1879089 14G08_rep_C_Ramiprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092958546-1879089 14G08_rep_C_Ramiprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wecF_P5F4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (wecF_P5F4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/005_Urea_Day2_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_119.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/588.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210314_LKM_rapid_beads_60min_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113040360-1874362 11F08_rep_B_(+)_-Levobunolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113040360-1874362 11F08_rep_B_(+)_-Levobunolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1C12_160525204335.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fecE_P3E12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (fecE_P3E12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122435973-1867422 04D02_rep_D_Vincaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122435973-1867422 04D02_rep_D_Vincaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130036471-1877284 13F09_rep_A_Alprostadilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130036471-1877284 13F09_rep_A_Alprostadilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152603432-1576979 Batch2_BXPC3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR07/WithKBr/140311P2.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/223.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086486/ccms_peak/peak/sample/MSplate21_ygbE_b2749_A3_plateY_rep3_STANDARD_GEVI_0-949_1843.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (MSplate21_ygbE_b2749_A3_plateY_rep3_STANDARD_GEVI_0-949_1843.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124507119-1862393 03C06_rep_A_Aztreonama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124507119-1862393 03C06_rep_A_Aztreonama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.cat_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152145905-1868017 05B01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152145905-1868017 05B01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223002533-1869927 01C07_rep_A_Cimetidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223002533-1869927 01C07_rep_A_Cimetidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_H8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122722212-1880061 15G08_rep_D_Docetaxelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122722212-1880061 15G08_rep_D_Docetaxelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125237882-1876919 12H02_rep_D_Crotamitona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125237882-1876919 12H02_rep_D_Crotamitona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_9_Blood_Ma_control_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_9_Blood_Ma_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_redo_MSMS_2022_neg-0011.mzML at line 689
Premature end of data in tag binary line 25561, line 25561, column 1232208 (pooled_redo_MSMS_2022_neg-0011.mzML, line 25561)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151241283-1576325 Batch5_NCIH446_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E11_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_D2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170207_068EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/2e/65d4c4a4d9ada066a979e607205a6a/input_file/MMW4_20170207_068EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_E5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095328/peak/MS_RAW_data/230811_BBT301_TPP_HighPH_6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/502.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111946041-1872598 10F05_rep_C_Fluocinonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111946041-1872598 10F05_rep_C_Fluocinonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170209_043ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e8/a689ac9478bbedbe7a760e8561e97e/input_file/SH9_20170209_043ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111803873-1872037 10B01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111803873-1872037 10B01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152027190-1576710 Batch1_UMUC3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190117_ES_H3K_batch14_repA_201.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/467-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N3_id_MSn_negative.mzML at line 21
index 542 is out of bounds for axis 0 with size 542
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200659015-1881584 16H07_rep_A_Milnacipran_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200659015-1881584 16H07_rep_A_Milnacipran_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121750705-1867098 04E09_rep_C_Spiperonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121750705-1867098 04E09_rep_C_Spiperonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD2_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/leuB_#5_P4D5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (leuB_#5_P4D5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fbaA_P5F12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (fbaA_P5F12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample009.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121251429-1879399 14E02_rep_D_(S)-propranolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121251429-1879399 14E02_rep_D_(S)-propranolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/add_P5G9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (add_P5G9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C6_id_MSn_positive.mzML at line 21
index 483 is out of bounds for axis 0 with size 483
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_49.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151816127-1576603 Batch3_PANC1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_19080521_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153844334-1577604 Batch6_HL60_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_37.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_37.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151348146-1576381 Batch6_RPMI8226_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S109.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S109.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-079_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111816317-1921642 2_G3_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111816317-1921642 2_G3_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A2_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30152 - GI-17-306.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007692_032218-5CRP2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007679_032118-1CRP4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_CABIN_sample03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202054352-1882211 16F02_rep_D_Irbesartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202054352-1882211 16F02_rep_D_Irbesartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123053787-1867721 05D04_rep_B_Moclobemideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123053787-1867721 05D04_rep_B_Moclobemideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101615353-1869541 07H08_rep_C_Dirithromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101615353-1869541 07H08_rep_C_Dirithromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202411429-1878365 10C01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202411429-1878365 10C01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121913629-1879687 15E08_rep_B_Desloratadineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121913629-1879687 15E08_rep_B_Desloratadineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P3_id_MSn_negative.mzML at line 21
index 361 is out of bounds for axis 0 with size 361
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_lipidomics2024/00080575.mzML at line 689
Premature end of data in tag binary line 404172, line 404172, column 2274 (00080575.mzML, line 404172)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100731874-1869126 07C08_rep_A_Sibutramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100731874-1869126 07C08_rep_A_Sibutramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHK014.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_02_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_02_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6B08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_23_Blood_EtOH_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_23_Blood_EtOH_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case104_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case104_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075192.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151507598-1576447 Batch6_CALU3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_A9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152531750-1576953 Batch1_CALU1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102032218-1869751 07E04_rep_D_Miglitola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102032218-1869751 07E04_rep_D_Miglitola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_57.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202125571-1882235 16G08_rep_D_Risedronic_acid_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202125571-1882235 16G08_rep_D_Risedronic_acid_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112510752-1874107 10C10_rep_D_Isoetharine_mesylate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112510752-1874107 10C10_rep_D_Isoetharine_mesylate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114835077-1875180 12C02_rep_B_Hymecromonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114835077-1875180 12C02_rep_B_Hymecromonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151337527-1576372 Batch6_SR8714_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151220804-1576308 Batch5_NCIH2135_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223921519-2227706 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150557155-1864871 02E08_rep_C_Isoconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150557155-1864871 02E08_rep_C_Isoconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150928651-1924663 2_H9_RGT2_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150928651-1924663 2_H9_RGT2_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/215-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/garR_#1_P3A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (garR_#1_P3A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_B5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argC_P5D4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (argC_P5D4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152524708-1576947 Batch2_LOXIMVI_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V7_LH.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G10_id_negative.mzML at line 21
index 248 is out of bounds for axis 0 with size 248
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153454160-1868624 06B06_rep_C_Modafinila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153454160-1868624 06B06_rep_C_Modafinila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151121656-1865123 02F09_rep_D_Terfenadineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151121656-1865123 02F09_rep_D_Terfenadineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hscC_#3_P5D6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (hscC_#3_P5D6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210108_AD_61.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case138_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case138_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/405.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-008_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/15_D24062013T1846_1399CBU_0012_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151856814-1576637 Batch5_HCC1187_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_109a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_E6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122723530-1880062 15F05_rep_D_Ibudilasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122723530-1880062 15F05_rep_D_Ibudilasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153752487-1577560 Batch6_MDAMB435S_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124756235-1862644 03B08_rep_B_Sulfamethoxazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124756235-1862644 03B08_rep_B_Sulfamethoxazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD6_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_QC_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uhpT_#1_P4E12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (uhpT_#1_P4E12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxA_#5_P4H12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (lpxA_#5_P4H12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 Column1_test_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151538914-1924977 4_D2_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151538914-1924977 4_D2_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_C10_id_MSn_negative.mzML at line 21
index 283 is out of bounds for axis 0 with size 283
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_N9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150229089-1864711 02E03_rep_B_Amfepramone hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150229089-1864711 02E03_rep_B_Amfepramone hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145936743-1864097 02E04_rep_B_Dehydrocholic acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145936743-1864097 02E04_rep_B_Dehydrocholic acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_79.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GA6_01_11617.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ1_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYA004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/24 Sept 2021 - Copy/convert/210924_09.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123418659-1876092 08E04_rep_B_Zafirlukasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123418659-1876092 08E04_rep_B_Zafirlukasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GH4_01_17114.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control240_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control240_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHF05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H8_id_MSn_negative.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150741509-1924571 2_D1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150741509-1924571 2_D1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101657207-1869576 07C03_rep_C_Biperiden_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101657207-1869576 07C03_rep_C_Biperiden_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113954208-1874766 11B08_rep_D_Deflazacorta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113954208-1874766 11B08_rep_D_Deflazacorta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/BeautyProducts_Vol3/BP6_01_12427.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145747295-1864009 02H08_rep_A_Gallamine triethiodidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145747295-1864009 02H08_rep_A_Gallamine triethiodidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_sample04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case97_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case97_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152633416-1577004 Batch2_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125705000-1863086 03G03_rep_D_Antimycin_Aa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125705000-1863086 03G03_rep_D_Antimycin_Aa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/acmum6p_murQ_P4G2_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (acmum6p_murQ_P4G2_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_96.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/621.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190201075338.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201028716-1877744 09C02_rep_B_Pranlukasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201028716-1877744 09C02_rep_B_Pranlukasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130157463-1877346 13C10_rep_B_Chlormadinone_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130157463-1877346 13C10_rep_B_Chlormadinone_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C24_id.mzML at line 21
index 532 is out of bounds for axis 0 with size 532
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100259193-1868908 06G04_rep_D_Metrizamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100259193-1868908 06G04_rep_D_Metrizamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190205_ES_H3K_batch15C_repB_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4F06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_E8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GB6_01_16795.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tdcC_P4H12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (tdcC_P4H12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1364.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1364.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150949329-1924681 2_C4_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150949329-1924681 2_C4_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nadD_P3B9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (nadD_P3B9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_redo_MSMS_2022_neg-0009.mzML at line 689
Premature end of data in tag binary line 16113, line 16113, column 990664 (pooled_redo_MSMS_2022_neg-0009.mzML, line 16113)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K20_id_MSn_positive.mzML at line 21
index 697 is out of bounds for axis 0 with size 697
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_F9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_C10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/404.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111334749-1871444 10A05_rep_B_Sulfamethoxypyridazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111334749-1871444 10A05_rep_B_Sulfamethoxypyridazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_42_NOR_51.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_42_NOR_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7F02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100524841-1869023 06B01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100524841-1869023 06B01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc2_T24_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113115937-1922279 1_E4_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113115937-1922279 1_E4_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisI_#2_P4A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (hisI_#2_P4A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case60_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case60_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/3dhsk_aroE_P4H2_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (3dhsk_aroE_P4H2_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudB_P4H7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (nudB_P4H7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114415237-1922963 4_E3_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114415237-1922963 4_E3_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113731159-1874651 11H08_rep_C_Scopolamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113731159-1874651 11H08_rep_C_Scopolamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_048ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/6c/4ce2d8159cc8c90045c53775d11fd5/input_file/QC_20170209_048ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100807078-1869154 07H01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100807078-1869154 07H01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4A09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample033.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L66.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L66.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/002_Soil_10mMExtra_3_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ugpQ_#1_P3C9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ugpQ_#1_P3C9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/028_CRa_H9M5_M470_Blank_07_high_pos.mzXML at line 689
Premature end of data in tag peaks line 18735, line 18739, column 56821 (028_CRa_H9M5_M470_Blank_07_high_pos.mzXML, line 18739)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165734758-2227486 PAT42.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201357108-1881894 16C06_rep_B_Nateglinideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201357108-1881894 16C06_rep_B_Nateglinideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112652923-1922090 4_F5_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112652923-1922090 4_F5_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O1_id.mzML at line 21
index 515 is out of bounds for axis 0 with size 515
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210313_LKM_mb_rapid_beads_40min_6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ7_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/350.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151934803-1867911 05B05_rep_C_Sulfisoxazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151934803-1867911 05B05_rep_C_Sulfisoxazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxM_P5C10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (lpxM_P5C10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223854013-1870332 01G11_rep_C_Tolnaftateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223854013-1870332 01G11_rep_C_Tolnaftateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122644658-1880032 15A11_rep_D_Estradiol_Valeratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122644658-1880032 15A11_rep_D_Estradiol_Valeratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145657992-1863969 02F01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145657992-1863969 02F01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA14.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151443341-1576427 Batch7_CORL88_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_G5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202059571-1882215 16E10_rep_D_Zoledronic_acid_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202059571-1882215 16E10_rep_D_Zoledronic_acid_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B6_id_MSn_negative.mzML at line 21
index 274 is out of bounds for axis 0 with size 274
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111454119-1871505 10B06_rep_B_Flecainide_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111454119-1871505 10B06_rep_B_Flecainide_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114320191-1874933 12G06_rep_A_Salmeterolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114320191-1874933 12G06_rep_A_Salmeterolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112750605-1874234 11G01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112750605-1874234 11G01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR37_5h2a.mzML at line 689
expected '>', line 136222, column 54 (pMIBSDR37_5h2a.mzML, line 136222)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125536272-1877055 12G01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125536272-1877055 12G01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112028768-1921755 2_B2_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112028768-1921755 2_B2_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH45.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000093604/raw/Samples/S_209_B_P1-B-4_01_23935.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30175 - GI-19-025.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD4_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151904599-1867887 05F10_rep_C_Nefazodone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151904599-1867887 05F10_rep_C_Nefazodone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD3_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202000451-1878167 09C02_rep_D_Pranlukastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202000451-1878167 09C02_rep_D_Pranlukastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223048442-1869961 01F11_rep_A_Tolazoline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223048442-1869961 01F11_rep_A_Tolazoline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GC12_01_16815.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153215635-1868499 06E10_rep_B_Pilocarpine_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153215635-1868499 06E10_rep_B_Pilocarpine_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lsrK_P4G8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (lsrK_P4G8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1069.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092947294-1879080 14G05_rep_C_Clonixin_Lysinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092947294-1879080 14G05_rep_C_Clonixin_Lysinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223818233-2227651 PAT48.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample124.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_B7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130256468-1877392 13G04_rep_B_Isometheptene_mucateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130256468-1877392 13G04_rep_B_Isometheptene_mucateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112207434-1921840 3_H4_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112207434-1921840 3_H4_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124916893-1876769 12B08_rep_C_Pipemidic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124916893-1876769 12B08_rep_C_Pipemidic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc009_neg.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc009_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114119615-1874835 11A06_rep_D_Piromidic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114119615-1874835 11A06_rep_D_Piromidic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD5_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_107.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_107.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121649901-1879578 15F11_rep_A_Bifonazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121649901-1879578 15F11_rep_A_Bifonazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153638031-1577498 Batch4_SW780_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_1_B_rep_2_B-A3_1_5822.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/466-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_148.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike6_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hA2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hA2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125136045-1876872 12H01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125136045-1876872 12H01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/641.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/425.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1D06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_G4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153840828-1577601 Batch6_CCRFCEM_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_32_NOR_15.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_32_NOR_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153023421-1868413 06F08_rep_A_Meclozine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153023421-1868413 06F08_rep_A_Meclozine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/226.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100334046-1868935 06A08_rep_D_Adamantamine_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100334046-1868935 06A08_rep_D_Adamantamine_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample160.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/24 Sept 2021 - Copy/convert/210924_03.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113356285-1922419 2_H10_IZH2_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113356285-1922419 2_H10_IZH2_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153508052-1868635 06B03_rep_C_Amifostineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153508052-1868635 06B03_rep_C_Amifostineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_111a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/menC_#1_P4G9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (menC_#1_P4G9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1215.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1215.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170127_050ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/74/3c2e2f44d77149bdcb78e98627f3b8/input_file/MMW4_20170127_050ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201937270-1882151 16D10_rep_D_Dofetilidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201937270-1882151 16D10_rep_D_Dofetilidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_65.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample200_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122806750-1880096 15F06_rep_D_Losartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122806750-1880096 15F06_rep_D_Losartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152723533-1868275 06A04_rep_A_Thyroxine_(L)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152723533-1868275 06A04_rep_A_Thyroxine_(L)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/930.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hcaT_P3B7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (hcaT_P3B7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hB1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hB1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_99.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151328605-1924870 3_D11_SNF3_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151328605-1924870 3_D11_SNF3_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151817359-1576604 Batch4_HS578T_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lnt_#1_P3B12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (lnt_#1_P3B12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113915552-1922696 3_E4_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113915552-1922696 3_E4_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-2-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_A8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ilvH_#3_P4H4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ilvH_#3_P4H4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_133.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_133.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purT_P4A2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (purT_P4A2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125058024-1862789 03F09_rep_C_Fenbufenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125058024-1862789 03F09_rep_C_Fenbufenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD5_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092420268-1878824 14C05_rep_A_Meprylcaine_hydrochloride_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092420268-1878824 14C05_rep_A_Meprylcaine_hydrochloride_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N12_id_MSn_positive.mzML at line 21
index 682 is out of bounds for axis 0 with size 682
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlA3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlA3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125718172-1863097 03A07_rep_D_Mafenide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125718172-1863097 03A07_rep_D_Mafenide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GH8_01_17001.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125533513-1863012 03D08_rep_D_Metaraminol_bitartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125533513-1863012 03D08_rep_D_Metaraminol_bitartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1063.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152913795-1868361 06H03_rep_A_Itoprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152913795-1868361 06H03_rep_A_Itoprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125839096-1877196 13E01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125839096-1877196 13E01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200900692-1881673 16G01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200900692-1881673 16G01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD2_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201331611-1881875 16H08_rep_B_Triclabendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201331611-1881875 16H08_rep_B_Triclabendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082735/ccms_peak/ST000664/EX00347-lipidomics/Raw data/NEG/BATCH3/20150406_Test.mzXML at line 689
Extra content at the end of the document, line 60284, column 1 (20150406_Test.mzXML, line 60284)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoF_P4H1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (nuoF_P4H1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_235.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_A9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097681/peak/amino acids/030521-b1-RN-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30148 - GI-17-182.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H18_id_MSn_negative.mzML at line 21
index 338 is out of bounds for axis 0 with size 338
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/111-4_idMsMs_25min_50eV_GE4_01_4253.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L70.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L70.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person22_RBC_elder_POS.mzXML at line 689
attributes construct error, line 41, column 81 (Person22_RBC_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092912279-1879052 14B06_rep_C_Piperidolate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092912279-1879052 14B06_rep_C_Piperidolate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112015084-1873006 10E09_rep_C_Vidarabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112015084-1873006 10E09_rep_C_Vidarabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_84.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_84.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111428326-1871485 10F01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111428326-1871485 10F01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD5_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151243663-1924831 3_D3_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151243663-1924831 3_D3_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D19_id_MSn_positive.mzML at line 21
index 423 is out of bounds for axis 0 with size 423
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_E6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113922962-1874741 11D05_rep_D_Novobiocin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113922962-1874741 11D05_rep_D_Novobiocin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/494-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD3_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A19_id_MSn_negative_20240406184215.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/008_1217_1_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8B10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/74.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/408.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/328.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_G5_id_positive.mzML at line 21
index 341 is out of bounds for axis 0 with size 341
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121336666-1879432 15D08_rep_A_Olopatadine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121336666-1879432 15D08_rep_A_Olopatadine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H17_id_MSn_negative.mzML at line 21
index 306 is out of bounds for axis 0 with size 306
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_2_RESV_200uM_POS.mzXML at line 689
attributes construct error, line 38, column 83 (C2C12_2_RESV_200uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145825742-1864040 02H09_rep_A_Neomycin sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145825742-1864040 02H09_rep_A_Neomycin sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/298.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130033372-1877282 13H01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130033372-1877282 13H01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130127571-1877323 13A08_rep_B_Gestrinonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130127571-1877323 13A08_rep_B_Gestrinonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_16_RIN_48.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_16_RIN_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092210592-1878723 14D05_rep_A_Cyproterone_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092210592-1878723 14D05_rep_A_Cyproterone_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G18_id_MSn_negative.mzML at line 21
index 304 is out of bounds for axis 0 with size 304
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153955599-1577664 Batch7_EKVX_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/972.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114906173-1875205 12F04_rep_B_Primidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114906173-1875205 12F04_rep_B_Primidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J21_id_MSn_positive.mzML at line 21
index 522 is out of bounds for axis 0 with size 522
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124139020-1876443 08B11_rep_D_Argatrobanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124139020-1876443 08B11_rep_D_Argatrobanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170207_043EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e2/7c538922d6da6ddbab79a2b9fc3999/input_file/SH8_20170207_043EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123300178-1876028 08F02_rep_B_Loracarbefa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123300178-1876028 08F02_rep_B_Loracarbefa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151701769-1925046 4_A8_SNF3_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151701769-1925046 4_A8_SNF3_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123214259-1875992 08G04_rep_B_Pyridoxine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123214259-1875992 08G04_rep_B_Pyridoxine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V1_LH_PSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151801941-1576591 Batch3_5637_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample215_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample082.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224251211-1870515 01B11_rep_D_Minoxidila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224251211-1870515 01B11_rep_D_Minoxidila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084884/updates/2020-02-03_jamirimoghaddam_67410a78/raw/w20_zob.mzML at line 689
Opening and ending tag mismatch: spectrum line 70695 and activation, line 70742, column 28 (w20_zob.mzML, line 70742)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152113974-1576747 Batch1_MDAMB436_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ5_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_4_P_rep_1_B-B8_1_5837.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113606192-1874583 11F10_rep_C_Fluvastatin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113606192-1874583 11F10_rep_C_Fluvastatin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152713357-1868267 06D04_rep_A_Cyanocobalaminb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152713357-1868267 06D04_rep_A_Cyanocobalaminb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1010.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fhuB_P5A8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (fhuB_P5A8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_096b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpBud2_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151750944-1576582 Batch3_5637_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083647/peak/mzxml_files/plate_03/00077E8BCB.mzXML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (00077E8BCB.mzXML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222733099-1869814 01H08_rep_A_Prednisoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222733099-1869814 01H08_rep_A_Prednisoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092550674-1878895 14E10_rep_B_(S)-(-)-Cycloserineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092550674-1878895 14E10_rep_B_(S)-(-)-Cycloserineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201651256-1882022 16B08_rep_C_Tolcaponeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201651256-1882022 16B08_rep_C_Tolcaponeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153519695-1577433 Batch4_977_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121528942-1866987 04G10_rep_B_Amodiaquin_dihydrochloride_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121528942-1866987 04G10_rep_B_Amodiaquin_dihydrochloride_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114140576-1874852 11B07_rep_D_Suprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114140576-1874852 11B07_rep_D_Suprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223101735-1869971 01B06_rep_A_Heptaminol hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223101735-1869971 01B06_rep_A_Heptaminol hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_V12_039_prot_05_IMS_29Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EBM016.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ6_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170209_033ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/0a/9ebdf0197dddd06665c844dbcb5a6b/input_file/MMW4_20170209_033ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/829.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112956357-1874332 11G09_rep_B_Acetaminophena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112956357-1874332 11G09_rep_B_Acetaminophena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007655_032118-1Thr3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_57.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d8_277_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 42702, column 1 (SysVirol_IFL001_1918_d8_277_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 42702)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113548535-1874569 11C03_rep_C_Clidinium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113548535-1874569 11C03_rep_C_Clidinium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/proline.mzXML at line 689
Premature end of data in tag peaks line 18367, line 18371, column 52714 (proline.mzXML, line 18371)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisC_P5C11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (hisC_P5C11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Penicillium_alli_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc017_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc017_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202116374-1882228 16F10_rep_D_Besifloxacin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202116374-1882228 16F10_rep_D_Besifloxacin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_106.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112224801-1921855 3_F3_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112224801-1921855 3_F3_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152623961-1868229 06E01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152623961-1868229 06E01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009416_IBD200_E5_A1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170207_056EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b4/bab8c7692b19cc947973f158855d54/input_file/SH10_20170207_056EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR23h3a.mzML at line 689
Specification mandates value for attribute vaoE, line 156015, column 83 (pBpumR23h3a.mzML, line 156015)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_7_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153351496-1577361 Batch5_SW620_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153241119-1577304 Batch4_SW780_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/PED1_50EV_RA5_01_22668.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170207_063EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/00/4bb37a4df811d8c02107b9144ae081/input_file/SH7_20170207_063EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121931124-1879700 15G02_rep_B_Gatifloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121931124-1879700 15G02_rep_B_Gatifloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample156.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control123_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control123_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/974.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case158_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case158_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201111488-1877775 09F11_rep_B_Cefmetazole_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201111488-1877775 09F11_rep_B_Cefmetazole_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151111445-1924752 3_G2_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151111445-1924752 3_G2_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145950153-1864108 02E02_rep_B_Bromocryptine mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145950153-1864108 02E02_rep_B_Bromocryptine mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_H3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemH_P4G10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (hemH_P4G10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_0126_190128114136.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_4_B_rep_1_B-D4_1_5666.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lptA_#4_P5D6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (lptA_#4_P5D6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223027288-1869945 01H10_rep_A_Diphemanil methylsulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223027288-1869945 01H10_rep_A_Diphemanil methylsulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GD9_01_16952.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122529987-1867466 05H04_rep_A_Hemicholinium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122529987-1867466 05H04_rep_A_Hemicholinium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150951929-1865053 02G01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150951929-1865053 02G01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152806325-1868308 06B09_rep_A_Biotina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152806325-1868308 06B09_rep_A_Biotina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223214563-1870026 01E04_rep_B_Betazole hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223214563-1870026 01E04_rep_B_Betazole hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151209961-1576299 Batch5_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GA2_01_11899.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_UC_077_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample120.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNT318_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-CCM-PA-QC-12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121623932-1879558 15D09_rep_A_Granisetrona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121623932-1879558 15D09_rep_A_Granisetrona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121648619-1879577 15H04_rep_A_Formoterol_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121648619-1879577 15H04_rep_A_Formoterol_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_113a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082742/ccms_peak/ST000775/EX00417/Raw data/Lipidomics/POS/20150318_Authentic.mzXML at line 689
Specification mandates value for attribute basePYtERD5HE, line 16243, column 24 (20150318_Authentic.mzXML, line 16243)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111707507-1871607 10F05_rep_B_Fluocinonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111707507-1871607 10F05_rep_B_Fluocinonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165924543-2227587 PAT45.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A10_id_MSn_negative_2.mzML at line 21
index 206 is out of bounds for axis 0 with size 206
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_elow.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111848975-1872072 10G11_rep_C_Cycloheximidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111848975-1872072 10G11_rep_C_Cycloheximidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_D12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/633.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123028103-1875906 08A06_rep_A_Atropine_sulfate_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123028103-1875906 08A06_rep_A_Atropine_sulfate_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121742839-1867092 04A03_rep_C_Flavoxate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121742839-1867092 04A03_rep_C_Flavoxate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/entA_#1_P4G6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (entA_#1_P4G6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125022677-1862761 03A02_rep_C_Isoniazidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125022677-1862761 03A02_rep_C_Isoniazidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_40x_MSMS_2022_1006_Michael_pos-0012.mzML at line 689
Premature end of data in tag binary line 44459, line 44459, column 2029096 (pooled_40x_MSMS_2022_1006_Michael_pos-0012.mzML, line 44459)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYB009A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_7_Blood_Ma_control_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_7_Blood_Ma_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/HFS_vehicle_T24_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cusF_#1_P3G9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (cusF_#1_P3G9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075493.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/ppbng_hemC_P6B3_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (ppbng_hemC_P6B3_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150731121-1924562 2_A3_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150731121-1924562 2_A3_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_B6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121923003-1867171 04G07_rep_C_Clemastine_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121923003-1867171 04G07_rep_C_Clemastine_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/eutB_P4H3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (eutB_P4H3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/449.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124244391-1876496 08D05_rep_D_Diclofenac_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124244391-1876496 08D05_rep_D_Diclofenac_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yidK_#4_P4A3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (yidK_#4_P4A3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J15_id_MSn_negative.mzML at line 21
index 322 is out of bounds for axis 0 with size 322
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K15_id_MSn_negative.mzML at line 21
index 317 is out of bounds for axis 0 with size 317
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHD11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112847581-1874279 11E02_rep_A_Olanzapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112847581-1874279 11E02_rep_A_Olanzapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/843.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIAI06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_13_Dorsal_skin_CMC_control_POS.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_13_Dorsal_skin_CMC_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152911111-1577137 Batch5_NCIH3255_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_100.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_30_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_30_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E7_id_MSn_positive.mzML at line 21
index 406 is out of bounds for axis 0 with size 406
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124348010-1876548 09B05_rep_A_Benfotiaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124348010-1876548 09B05_rep_A_Benfotiaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125907982-1863189 04H06_rep_A_Minocycline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125907982-1863189 04H06_rep_A_Minocycline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_D1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152214774-1576795 Batch1_LK2_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165855313-2227560 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202051111-1878207 09D09_rep_D_Tazobactamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202051111-1878207 09D09_rep_D_Tazobactamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M8_id_MSn_positive.mzML at line 21
index 520 is out of bounds for axis 0 with size 520
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/1_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113632836-1922554 2_E2_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113632836-1922554 2_E2_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNT318_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3B12_160529040352.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD2_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151159463-1924793 3_F5_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151159463-1924793 3_F5_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_C6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/NEC2_20EV_RA1_01_22483.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_21_Dorsal_skin_EtOH_control_POS.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_21_Dorsal_skin_EtOH_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152644106-1577013 Batch2_NCIH838_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_131_1C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151847306-1576629 Batch7_NCIH1993_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET138.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET138.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_138.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_P_E3E4_AD_IMS_11Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100659020-1869099 07F07_rep_A_(S)-(-)-Atenolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100659020-1869099 07F07_rep_A_(S)-(-)-Atenolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153639278-1577499 Batch4_SW780_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L6_id_MSn_negative.mzML at line 21
index 323 is out of bounds for axis 0 with size 323
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHI10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094756/peak/02_TO_mPlasma_CROT_main_TOP_pos_HILIC.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-187_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.gha_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153513146-1868639 06B04_rep_C_Carbarsoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153513146-1868639 06B04_rep_C_Carbarsoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114800499-1875152 12C08_rep_B_S-(+)-ibuprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114800499-1875152 12C08_rep_B_S-(+)-ibuprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_C12_id_negative.mzML at line 21
index 330 is out of bounds for axis 0 with size 330
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1K001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152009465-1576696 Batch1_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1F03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190119_ES_H3K_batch14_repC_213.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210505_LKM_on_ctrl_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2F03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124228615-1876483 08C11_rep_D_Etretinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124228615-1876483 08C11_rep_D_Etretinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_26.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_26.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD2_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224123336-1870446 01F03_rep_D_Carbamazepineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224123336-1870446 01F03_rep_D_Carbamazepineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150244209-1924319 1_A9_RGT2_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150244209-1924319 1_A9_RGT2_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152404242-1576882 Batch2_NCIH596_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_B8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_B8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124506545-1876612 09F10_rep_A_Hexestrola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124506545-1876612 09F10_rep_A_Hexestrola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111815184-1921641 2_B7_GAP1_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111815184-1921641 2_B7_GAP1_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124828316-1876733 12F07_rep_C_Bephenium_hydroxynaphthoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124828316-1876733 12F07_rep_C_Bephenium_hydroxynaphthoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165732558-2227484 PAT47.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_109.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F14_id_MSn_negative.mzML at line 21
index 310 is out of bounds for axis 0 with size 310
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/374.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224136091-1870456 01H07_rep_D_Dibucaineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224136091-1870456 01H07_rep_D_Dibucaineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112012298-1921741 2_H1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112012298-1921741 2_H1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/66-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N13_id_negative.mzML at line 21
index 252 is out of bounds for axis 0 with size 252
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_E5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125106700-1862796 03D02_rep_C_Midodrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125106700-1862796 03D02_rep_C_Midodrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085122/peak/101.mzXML at line 255
Error -3 while decompressing data: invalid distance too far back
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122113014-1867258 04H07_rep_C_Glibenclamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122113014-1867258 04H07_rep_C_Glibenclamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201809788-1882082 16G03_rep_C_Loteprednol_etabonateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201809788-1882082 16G03_rep_C_Loteprednol_etabonateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Citrobacter_sp__EB1K011.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112703544-1922099 4_F11_GPR1_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112703544-1922099 4_F11_GPR1_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD2_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C10_id.mzML at line 21
index 524 is out of bounds for axis 0 with size 524
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/728.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaZ_P3G6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (waaZ_P3G6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121400251-1879450 15A04_rep_A_Doxycycline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121400251-1879450 15A04_rep_A_Doxycycline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD3_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYB012B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD5_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alaC_P4B5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (alaC_P4B5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124156545-1862242 03H07_rep_A_Dilazep_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124156545-1862242 03H07_rep_A_Dilazep_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD2_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR13h1a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 77570, column 2907 (pMIBSDR13h1a.mzML, line 77570)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125518682-1863000 03G10_rep_D_Nefopam_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125518682-1863000 03G10_rep_D_Nefopam_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GA10_01_16783.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202133220-1882241 16G11_rep_D_Latanoprosta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202133220-1882241 16G11_rep_D_Latanoprosta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_6_male_2022_1017_Michael_neg-0.0024.mzML at line 689
Premature end of data in tag binary line 22049, line 22049, column 1083918 (2_6_male_2022_1017_Michael_neg-0.0024.mzML, line 22049)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153921295-1577635 Batch6_K562_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093058181-1879131 14C06_rep_C_Milrinoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093058181-1879131 14C06_rep_C_Milrinoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fliY_P4E1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (fliY_P4E1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pstS_P3G10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (pstS_P3G10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD4_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202412736-1878366 10E10_rep_A_Sulfametera.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202412736-1878366 10E10_rep_A_Sulfametera.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J7_id.mzML at line 21
index 549 is out of bounds for axis 0 with size 549
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/222.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152930045-1577153 Batch5_NCIH2347_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nagK_#1_P4G12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (nagK_#1_P4G12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/555-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153954421-1577663 Batch6_K562_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092544062-1878890 14F06_rep_B_Cyclopentolate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092544062-1878890 14F06_rep_B_Cyclopentolate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/044_CRa_H9M5_M470_L14_K1_high_pos.mzXML at line 689
Premature end of data in tag peaks line 28976, line 28980, column 7671 (044_CRa_H9M5_M470_L14_K1_high_pos.mzXML, line 28980)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123035498-1875912 08E11_rep_A_Hydroxychloroquine_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123035498-1875912 08E11_rep_A_Hydroxychloroquine_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD4_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121309167-1866881 04F08_rep_B_Benzydamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121309167-1866881 04F08_rep_B_Benzydamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR37_5h2a.mzML at line 689
expected '>', line 136222, column 54 (pMIBSDR37_5h2a.mzML, line 136222)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_80.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_M6_id_MSn_negative.mzML at line 21
index 374 is out of bounds for axis 0 with size 374
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4C5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4C5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123308182-1867829 05C09_rep_B_Chlorprothixene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123308182-1867829 05C09_rep_B_Chlorprothixene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151655923-1576537 Batch7_SF295_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.co_MS_M.mzXML at line 689
Premature end of data in tag peaks line 26346, line 26349, column 74908 (S.co_MS_M.mzXML, line 26349)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHD08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111732674-1871627 10G05_rep_B_Bendroflumethiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111732674-1871627 10G05_rep_B_Bendroflumethiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079466/peak/Adenocalymma imperatoris/AIL-POS.mgf at line 1048
'str' object cannot be interpreted as an integer
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/363.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mraY_P5B7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (mraY_P5B7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083189.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210505_LKM_beads30min_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1844.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1844.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D10_id_MSn_positive.mzML at line 21
index 420 is out of bounds for axis 0 with size 420
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_C9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121621742-1867028 04C02_rep_B_Ethisteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121621742-1867028 04C02_rep_B_Ethisteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG016C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125227415-1876911 12G07_rep_C_Altretaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125227415-1876911 12G07_rep_C_Altretaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/98.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151825795-1576611 Batch3_J82_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/098_88.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH9.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153425246-1868601 06F02_rep_B_Alizapride_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153425246-1868601 06F02_rep_B_Alizapride_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB3A02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_29_AC+_54.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111757699-1872032 10B05_rep_C_Flumethasonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111757699-1872032 10B05_rep_C_Flumethasonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person24_plasma_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person24_plasma_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/458.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD5_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_E6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152226175-1576804 Batch1_HX147_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_17121406_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074320.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_C4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_10_40x_2022_1006_Michael_pos-0.0028.mzML at line 689
Premature end of data in tag binary line 425, line 425, column 83043 (1_10_40x_2022_1006_Michael_pos-0.0028.mzML, line 425)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093526/peak/mzML/DIA/Blk_Water_POS_DIA_30mz.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D7_id_MSn_positive.mzML at line 21
index 662 is out of bounds for axis 0 with size 662
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/069_68.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122411953-1879914 15H04_rep_C_Formoterol_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122411953-1879914 15H04_rep_C_Formoterol_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample079.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121301317-1879406 14C08_rep_D_Ticarcillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121301317-1879406 14C08_rep_D_Ticarcillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F8_id_MSn_negative.mzML at line 21
index 314 is out of bounds for axis 0 with size 314
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153935365-1577647 Batch6_SF268_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_101a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD6_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murA_P5D8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (murA_P5D8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E7_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C2_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.co_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091609/raw/GNPS Workshop Dataset/1110222_solventblank_DDA3.mzXML at line 689
Specification mandates value for attribute yfnwHx, line 22588, column 17 (1110222_solventblank_DDA3.mzXML, line 22588)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122944501-1880173 15B11_rep_D_Diclazurilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122944501-1880173 15B11_rep_D_Diclazurilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hcaT_P3B7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (hcaT_P3B7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_66.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR23h3b.mzML at line 689
Specification mandates value for attribute cvRThjRQypu00PMddND6mXUQ5AA1UPKddVDxJLbQ1f320N3i91DFqHdQ3cQ4EOXIuBD2JDgQ4rL4EOB7uBDNyDiQxaj4kMtseJDqCrjQxsl5kOJhedDcS3pQwyj6kN1lOtDgvjwQ6Kl8UMw, line 173167, column 163 (pBpumR23h3b.mzML, line 173167)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120940904-1879256 14G07_rep_D_Meropenema.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120940904-1879256 14G07_rep_D_Meropenema.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124927611-1862717 03C03_rep_B_Levamisole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124927611-1862717 03C03_rep_B_Levamisole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101348272-1869426 07G01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101348272-1869426 07G01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202316921-1878322 10F08_rep_A_Alexidine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202316921-1878322 10F08_rep_A_Alexidine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V1_EDTAk3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125921685-1877229 13B10_rep_A_Ozagrel_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125921685-1877229 13B10_rep_A_Ozagrel_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_F1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR231_5h1a.mzML at line 689
Opening and ending tag mismatch: selectedIon line 21055 and binary, line 21056, column 560 (pMIBSDR231_5h1a.mzML, line 21056)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET109.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET109.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_120.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_120.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_C3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_19073146_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/cal_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_17121408_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H4_id_MSn_negative.mzML at line 21
index 298 is out of bounds for axis 0 with size 298
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201742522-1882061 16H05_rep_C_Ceftibutena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201742522-1882061 16H05_rep_C_Ceftibutena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/36-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ6_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Penicillium_roqueforti_02.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113235599-1922348 1_E3_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113235599-1922348 1_E3_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120907820-1879231 14F01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120907820-1879231 14F01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-2-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-5-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR07/WithKBr/140311P5.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153754859-1577562 Batch6_SF268_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample060.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_19032901_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113103078-1922268 1_B5_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113103078-1922268 1_B5_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082735/ccms_peak/ST000664/EX00347-lipidomics/Raw data/NEG/BATCH2/20150323_Pooled.mzXML at line 689
Opening and ending tag mismatch: peaks line 28800 and msRun, line 57701, column 11 (20150323_Pooled.mzXML, line 57701)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fdhF_P5F8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (fdhF_P5F8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170209_051ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/83/cc2a8d69053acf4b2ca121bca5f512/input_file/SH10_20170209_051ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114421147-1874983 12B09_rep_A_Dioxybenzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114421147-1874983 12B09_rep_A_Dioxybenzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_MICU_494_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1B05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096852/peak/peaklist files/MzML_Brain/231003_Lumos_SK_Brain_DG_M1.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000096852/peak/peaklist files/MzML_Brain/231003_Lumos_SK_Brain_DG_M1.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4E01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_H1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_H1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_61.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_61.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112125885-1921804 2_D5_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112125885-1921804 2_D5_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111750226-1872026 10C06_rep_C_Spiramycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111750226-1872026 10C06_rep_C_Spiramycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/450.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F2_id.mzML at line 21
index 484 is out of bounds for axis 0 with size 484
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170209_047ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/3f/55576e9f030cc39ed8ede37e5499b3/input_file/SH7_20170209_047ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121544842-1866999 04C09_rep_B_Vinpocetineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121544842-1866999 04C09_rep_B_Vinpocetineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114639695-1875089 12E01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114639695-1875089 12E01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_61_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_61_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD4_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112518288-1922007 3_C8_GPR1_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112518288-1922007 3_C8_GPR1_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/GNPS-Nudibranch/converted coba2/200609_sample_07.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/chol_betA_P3D1_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (chol_betA_P3D1_Aquity_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092356730-1878806 14F09_rep_A_Sarafloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092356730-1878806 14F09_rep_A_Sarafloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR131_5h3a.mzML at line 689
Specification mandates value for attribute sRxTQ74nU0MDhVND3jpUQ7MrVUPwDVZDqspXQ, line 179661, column 57 (pMIBSDR131_5h3a.mzML, line 179661)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224227100-1870496 01E11_rep_D_Lidocaine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224227100-1870496 01E11_rep_D_Lidocaine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K3_id_MSn_positive.mzML at line 21
index 723 is out of bounds for axis 0 with size 723
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153850340-1577609 Batch7_EKVX_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/C24_I_ESI+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102023584-1869744 07C04_rep_D_Cetirizine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102023584-1869744 07C04_rep_D_Cetirizine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/NEC1_40EV_RA7_01_22606.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_C1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_G5_id_negative.mzML at line 21
index 227 is out of bounds for axis 0 with size 227
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170207_068EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ff/94203673a1dcdb4008731d831c1d80/input_file/MMW4_20170207_068EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample171_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB4A01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/124-4_MsMs_25min_20eV_GE5_01_4132.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_G12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210120_AD_7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151813878-1867847 05H08_rep_C_Clomiphene_citrate_(Z,E)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151813878-1867847 05H08_rep_C_Clomiphene_citrate_(Z,E)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4C12_160531145502.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091841694-1878560 13F05_rep_D_Sertralinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091841694-1878560 13F05_rep_D_Sertralinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/araE_P3A4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (araE_P3A4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D1_postFOS_3_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122437136-1867423 04D02_rep_D_Vincamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122437136-1867423 04D02_rep_D_Vincamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/597.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std d 003a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C9_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C19_id_MSn_positive.mzML at line 21
index 595 is out of bounds for axis 0 with size 595
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111901119-1872563 10F09_rep_C_Proadifen_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111901119-1872563 10F09_rep_C_Proadifen_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/CORN_AAW3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ11141421.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_103b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample207.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222816141-1869847 01G06_rep_A_Diphenhydramine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222816141-1869847 01G06_rep_A_Diphenhydramine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_H3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113022226-1874350 11D07_rep_B_Indoprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113022226-1874350 11D07_rep_B_Indoprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097681/peak/amino acids/030521-b1-QC4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114508523-1875021 12C07_rep_A_Fluspirilenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114508523-1875021 12C07_rep_A_Fluspirilenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_E20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_H9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125645617-1863070 03B03_rep_D_Etofyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125645617-1863070 03B03_rep_D_Etofyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/satP_#3_P4C7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (satP_#3_P4C7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081771.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Acido_24188.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample139_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Methylobacterium_LYG017A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130640140-1877567 13D08_rep_C_Fluticasone_propionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130640140-1877567 13D08_rep_C_Fluticasone_propionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114920819-1875217 12D11_rep_B_L(-)-vesamicol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114920819-1875217 12D11_rep_B_L(-)-vesamicol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152311653-1576840 Batch2_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153742159-1868759 06A03_rep_C_Haloproginb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153742159-1868759 06A03_rep_C_Haloproginb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfE_P3B9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (hyfE_P3B9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130008432-1877265 13E11_rep_A_Lodoxamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130008432-1877265 13E11_rep_A_Lodoxamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114209813-1922851 4_C11_STE2_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114209813-1922851 4_C11_STE2_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151411178-1576400 Batch6_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081012.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113638780-1874609 11A11_rep_C_Sulconazole_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113638780-1874609 11A11_rep_C_Sulconazole_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/008_1217_3_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223831204-1870314 01H11_rep_C_Trimethobenzamide hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223831204-1870314 01H11_rep_C_Trimethobenzamide hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/157_125.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_D4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/talA_P3B2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (talA_P3B2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P5_id_MSn_positive.mzML at line 21
index 775 is out of bounds for axis 0 with size 775
Error processing file: /data/datasets/server/MassIVE/MSV000090213/raw/18March2022_006_VH RT Trang 10x_pos  3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124747704-1862637 03C07_rep_B_Cloxacillin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124747704-1862637 03C07_rep_B_Cloxacillin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152256314-1576828 Batch2_NCIH460_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pntA_P3A12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (pntA_P3A12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150417133345.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_mock_d1_289_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 56463, column 1 (SysVirol_IFT001_mock_d1_289_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 56463)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxK_#4_P4A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (lpxK_#4_P4A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sufE_P4C12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (sufE_P4C12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125437149-1862966 03E06_rep_D_Tolfenamic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125437149-1862966 03E06_rep_D_Tolfenamic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/SP418.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C7_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101800159-1869628 07D03_rep_D_Iohexolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101800159-1869628 07D03_rep_D_Iohexolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112708029-1874200 11E04_rep_A_Nafcillin_sodium_salt_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112708029-1874200 11E04_rep_A_Nafcillin_sodium_salt_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125607141-1863039 03F03_rep_D_Pyrantel_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125607141-1863039 03F03_rep_D_Pyrantel_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121353582-1879445 15C01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121353582-1879445 15C01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151957956-1576687 Batch1_NCIH2073_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2C06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114546283-1875048 12B06_rep_A_Aminohippuric_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114546283-1875048 12B06_rep_A_Aminohippuric_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-meoh.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/ALKANES_10PPM_3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_19032111_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_E2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6G02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1F06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisP_#1_P4G12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (hisP_#1_P4G12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_054EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/5f/f2f11f7bd48a93748074fe74de2c39/input_file/QC_20170207_054EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_B7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145823114-1864038 02E04_rep_A_Dehydrocholic acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145823114-1864038 02E04_rep_A_Dehydrocholic acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125113018-1862801 03F11_rep_C_Indapamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125113018-1862801 03F11_rep_C_Indapamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5C2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5C2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_C3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/166_129.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125611356-1877082 12C02_rep_D_Hymecromoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125611356-1877082 12C02_rep_D_Hymecromoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153115134-1868452 06C09_rep_B_Roxatidine_Acetate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153115134-1868452 06C09_rep_B_Roxatidine_Acetate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_01_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_01_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_A9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114251822-1874910 12H07_rep_A_Megestrol_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114251822-1874910 12H07_rep_A_Megestrol_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122327605-1867367 04C04_rep_D_Doxepin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122327605-1867367 04C04_rep_D_Doxepin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201923088-1882140 16H03_rep_D_Pemetrexed_disodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201923088-1882140 16H03_rep_D_Pemetrexed_disodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153550100-1577458 Batch4_PANC0813_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_G12_id_negative.mzML at line 21
index 218 is out of bounds for axis 0 with size 218
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-29d.mzXML at line 689
Premature end of data in tag msRun line 5, line 6445, column 1 (YnYn-29d.mzXML, line 6445)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202312081-1878318 10G04_rep_A_Clofibric_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202312081-1878318 10G04_rep_A_Clofibric_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_E2_id_positive.mzML at line 21
index 346 is out of bounds for axis 0 with size 346
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122909374-1867642 05F06_rep_A_Methiothepin_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122909374-1867642 05F06_rep_A_Methiothepin_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case214_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case214_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30108 - GI-14-456.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201907734-1882128 16B05_rep_D_Tegaserod_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201907734-1882128 16B05_rep_D_Tegaserod_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_241.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152905313-1577132 Batch3_EPLC272H_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw_Baseline_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cpsG_P3C2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (cpsG_P3C2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122919829-1875853 08E08_rep_A_Eburnamonine_(-)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122919829-1875853 08E08_rep_A_Eburnamonine_(-)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007654_032118-1Thr2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_48.mzXML at line 689
Premature end of data in tag peaks line 19419, line 19423, column 3654 (20121114_48.mzXML, line 19423)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_19040322_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_19032901_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narY_P4H5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (narY_P4H5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1013.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_blank_26.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_blank_26.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091947720-1878612 13H11_rep_D_Pyrvinium_pamoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091947720-1878612 13H11_rep_D_Pyrvinium_pamoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145615703-1863935 02G11_rep_A_Dihydroergotamine tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145615703-1863935 02G11_rep_A_Dihydroergotamine tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152558577-1576975 Batch3_MDAMB157_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112154683-1921829 3_A10_GPR1_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112154683-1921829 3_A10_GPR1_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202158354-1882261 16B02_rep_D_Ipriflavonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202158354-1882261 16B02_rep_D_Ipriflavonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rutE_P3E1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (rutE_P3E1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170209_047ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/89/e54bfd3b51df3548fe38cc93a6eb56/input_file/SH7_20170209_047ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/297.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124328360-1862315 03F11_rep_A_Indapamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124328360-1862315 03F11_rep_A_Indapamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201251506-1877848 09G02_rep_B_Trihexyphenidyl-D,L_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201251506-1877848 09G02_rep_B_Trihexyphenidyl-D,L_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_A13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2E09P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125840392-1877197 13D03_rep_A_Pizotifen_malatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125840392-1877197 13D03_rep_A_Pizotifen_malatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112421930-1921958 3_G11_GPR1_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112421930-1921958 3_G11_GPR1_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_global_HFD7_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD3_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121852989-1867147 04A08_rep_C_Albendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121852989-1867147 04A08_rep_C_Albendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_5_B-A2_1_5819.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/700.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111644435-1921563 1_C4_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111644435-1921563 1_C4_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control172_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control172_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124729243-1862622 03E08_rep_B_Tibolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124729243-1862622 03E08_rep_B_Tibolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpBud2_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB4G03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/5.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210324_AD_59.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130055352-1877298 13B09_rep_A_Memantine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130055352-1877298 13B09_rep_A_Memantine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0026_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125511412-1862994 03B10_rep_D_Phenformin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125511412-1862994 03B10_rep_D_Phenformin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125939833-1863216 04B02_rep_A_Chlorothiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125939833-1863216 04B02_rep_A_Chlorothiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223940979-1870368 01F11_rep_C_Tolazoline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223940979-1870368 01F11_rep_C_Tolazoline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150942438-1924675 2_B4_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150942438-1924675 2_B4_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2D04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223732109-2227611 PAT35.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_sample11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_61.mzXML at line 689
Premature end of data in tag peaks line 19861, line 19865, column 3654 (20121114_61.mzXML, line 19865)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2A08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fumA_#2_P4A2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (fumA_#2_P4A2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125844169-1863169 04G03_rep_A_Lincomycin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125844169-1863169 04G03_rep_A_Lincomycin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124439969-1862372 03B10_rep_A_Phenformin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124439969-1862372 03B10_rep_A_Phenformin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101912404-1869686 07F06_rep_D_Methoxamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101912404-1869686 07F06_rep_D_Methoxamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123251285-1876021 08A10_rep_B_Entacaponeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123251285-1876021 08A10_rep_B_Entacaponeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arsC_#2_P4C9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (arsC_#2_P4C9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD1_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152501657-1868165 05G09_rep_D_Dequalinium_dichlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152501657-1868165 05G09_rep_D_Dequalinium_dichlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152526880-1868185 05F05_rep_D_Methylergometrine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152526880-1868185 05F05_rep_D_Methylergometrine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N4_id_MSn_negative.mzML at line 21
index 328 is out of bounds for axis 0 with size 328
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125026582-1862764 03B09_rep_C_Mephenesina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125026582-1862764 03B09_rep_C_Mephenesina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD2_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_24_Blood_EtOH_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_24_Blood_EtOH_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G12_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150439133-1924415 1_F8_RGT2_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150439133-1924415 1_F8_RGT2_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mscM_#2_P4D9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (mscM_#2_P4D9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/proV_#4_P4A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (proV_#4_P4A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113737436-1874656 11H11_rep_C_Carbachola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113737436-1874656 11H11_rep_C_Carbachola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/352.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_19073146_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150224956-1924303 1_H8_RGT2_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150224956-1924303 1_H8_RGT2_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123248569-1867813 05G03_rep_B_Betaxolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123248569-1867813 05G03_rep_B_Betaxolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084126/ccms_peak/GC_metabolomics_Raw/20160224_KAO_GC_D408B.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000084126/ccms_peak/GC_metabolomics_Raw/20160224_KAO_GC_D408B.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V4_LH.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153918861-1577633 Batch7_UO31_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151614620-1576502 Batch7_SN12C_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/002_Urea_Day9_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_145.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ7_4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc060_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc060_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170207_037EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/43/bcdf1ce332ba8a922bf018840489e3/input_file/MMW4_20170207_037EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpBud2_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417220705.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBmegR224h2a.mzML at line 689
Opening and ending tag mismatch: binary line 210850 and spectrum, line 210882, column 20 (pBmegR224h2a.mzML, line 210882)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_sample08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150758847-1864965 02A06_rep_D_Baclofen (R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150758847-1864965 02A06_rep_D_Baclofen (R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151307647-1576347 Batch7_CHAGOK1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GE4_01_11686.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_A_4.mzXML at line 689
Premature end of data in tag peaks line 2191, line 2195, column 3562 (L_A_4.mzXML, line 2195)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223748142-2227625 PAT36.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaZ_P4B9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (paaZ_P4B9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_1_B_rep_3_B-E4_1_5863.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113843915-1922668 3_D3_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113843915-1922668 3_D3_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G7_id_MSn_negative.mzML at line 21
index 345 is out of bounds for axis 0 with size 345
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122819517-1880106 15A01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122819517-1880106 15A01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150611410-1864882 02E02_rep_C_Bromocryptine mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150611410-1864882 02E02_rep_C_Bromocryptine mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample031.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_106.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_38.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_38.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151905386-1576644 Batch7_NCIH1993_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201528473-1877961 09A11_rep_C_Pinaverium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201528473-1877961 09A11_rep_C_Pinaverium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR23h3b.mzML at line 689
Specification mandates value for attribute cvRThjRQypu00PMddND6mXUQ5AA1UPKddVDxJLbQ1f320N3i91DFqHdQ3cQ4EOXIuBD2JDgQ4rL4EOB7uBDNyDiQxaj4kMtseJDqCrjQxsl5kOJhedDcS3pQwyj6kN1lOtDgvjwQ6Kl8UMw, line 173167, column 163 (pBpumR23h3b.mzML, line 173167)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/blank_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_A12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113736134-1874655 11E06_rep_C_Amiprilose_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113736134-1874655 11E06_rep_C_Amiprilose_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153838442-1577599 Batch7_NCIH441_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124523813-1862406 03F07_rep_A_Tiapride_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124523813-1862406 03F07_rep_A_Tiapride_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2A06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_7_P3A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024902 (ctrl_7_P3A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125718853-1877134 13H03_rep_A_Articaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125718853-1877134 13H03_rep_A_Articaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201556053-1877982 09F03_rep_C_Citalopram_Hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201556053-1877982 09F03_rep_C_Citalopram_Hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122359018-1867392 04E05_rep_D_Diethylcarbamazine_citratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122359018-1867392 04E05_rep_D_Diethylcarbamazine_citratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007526_031618-1Thr1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_65_NOR_40.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_65_NOR_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_68.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_A9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28022021_Batch02_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_SERUM_V4_CAT.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acpH_P3E1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (acpH_P3E1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNT360_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170125_026EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e6/0a95adc864c19c2a80873c1c123791/input_file/MMW5_20170125_026EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122102629-1879770 15C07_rep_B_Candesartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122102629-1879770 15C07_rep_B_Candesartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_71.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control65_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control65_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike0_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6C09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151855495-1867880 05G06_rep_C_Mitoxantrone_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151855495-1867880 05G06_rep_C_Mitoxantrone_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092548010-1878893 14A11_rep_B_Quinethazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092548010-1878893 14A11_rep_B_Quinethazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/482-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_A5M_pos_IMS1_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122510426-1867450 04C10_rep_D_Clomipramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122510426-1867450 04C10_rep_D_Clomipramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080389/peak/Peak_List_Files/mLm_CC_Tmem111_E18-5_AT2_Ctl_2_P_15Sep16_Arwen_16-08-17.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/QC_7_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G2_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2E01P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3D06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223738017-1870273 01E10_rep_C_Amyleine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223738017-1870273 01E10_rep_C_Amyleine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaC_#1_P5D9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (waaC_#1_P5D9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111516865-1871522 10F11_rep_B_Cinoxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111516865-1871522 10F11_rep_B_Cinoxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/483-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_50.mzXML at line 689
Premature end of data in tag msRun line 5, line 19952, column 1 (20121114_50.mzXML, line 19952)
Error processing file: /data/datasets/server/MassIVE/MSV000088138/raw/210916_tanaka01.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_F5_01_12212.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152905059-1868354 06G08_rep_A_Rifapentinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152905059-1868354 06G08_rep_A_Rifapentinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample213.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1063.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0003_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/126-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150242071-1864721 02E11_rep_B_Dexamethasone acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150242071-1864721 02E11_rep_B_Dexamethasone acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_175.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_175.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_C11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I16_id_negative.mzML at line 21
index 271 is out of bounds for axis 0 with size 271
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/591.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092153903-1878709 14G03_rep_A_Fexofenadine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092153903-1878709 14G03_rep_A_Fexofenadine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/prpD_P3E12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (prpD_P3E12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101817398-1869642 07B03_rep_D_Nitrofuralb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101817398-1869642 07B03_rep_D_Nitrofuralb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_A6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/88.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111848592-1921670 2_A2_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111848592-1921670 2_A2_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/29.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/eda_#1_P4A5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (eda_#1_P4A5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D3_id_negative.mzML at line 21
index 245 is out of bounds for axis 0 with size 245
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_85.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_85.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_18092931_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Serratia_proteamaculans_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_Plasma3_POS.mzXML at line 689
attributes construct error, line 38, column 75 (Person4_Plasma3_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C12_id_negative.mzML at line 21
index 227 is out of bounds for axis 0 with size 227
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122622999-1880015 15H09_rep_D_Sildenafilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122622999-1880015 15H09_rep_D_Sildenafilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ2_2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152321933-1868090 05E06_rep_D_Brinzolamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152321933-1868090 05E06_rep_D_Brinzolamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_45_RIN_15.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_45_RIN_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3H05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085847/raw/andrem1/69_StdMix_6_Neg.mzML at line 689
Opening and ending tag mismatch: binary line 9606 and scanList, line 9607, column 22 (69_StdMix_6_Neg.mzML, line 9607)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/826.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_B4_id_MSn_negative.mzML at line 21
index 218 is out of bounds for axis 0 with size 218
Error processing file: /data/datasets/server/MassIVE/MSV000092291/peak/Mesotrione_neg_A. palmeri vs A. tuberculatus_mzML/59-QC.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000092291/peak/Mesotrione_neg_A. palmeri vs A. tuberculatus_mzML/59-QC.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_223.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123024693-1867700 05A08_rep_B_Cefoperazone_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123024693-1867700 05A08_rep_B_Cefoperazone_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/004_Soil_WaterIntra_1_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/863.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113505367-1922479 2_B2_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113505367-1922479 2_B2_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114035597-1922767 3_A8_STE2_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114035597-1922767 3_A8_STE2_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222958425-1869924 01D01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222958425-1869924 01D01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_08_liver_control_skin_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_08_liver_control_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_RBC_4h_POS.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer4_RBC_4h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/R24_III_ESI+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM4O001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125652859-1863076 03C04_rep_D_Pargyline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125652859-1863076 03C04_rep_D_Pargyline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111438265-1921069 1_C1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111438265-1921069 1_C1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007509_031618-0.01Thr2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150451686-1864820 02H05_rep_C_Josamycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150451686-1864820 02H05_rep_C_Josamycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F22_id_negative.mzML at line 21
index 268 is out of bounds for axis 0 with size 268
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113755999-1922626 3_E3_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113755999-1922626 3_E3_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153829163-1577591 Batch7_UO31_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111835580-1921659 2_F9_GAP1_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111835580-1921659 2_F9_GAP1_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dhaK_P3D9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (dhaK_P3D9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ5_3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A5_id_MSn_positive.mzML at line 21
index 689 is out of bounds for axis 0 with size 689
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130755372-1877627 13G03_rep_C_Nifekalanta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130755372-1877627 13G03_rep_C_Nifekalanta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GE11_01_16895.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/003_Ammonia_Day4_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case105_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case105_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_G7_id_positive.mzML at line 21
index 375 is out of bounds for axis 0 with size 375
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N4_id_MSn_positive.mzML at line 21
index 651 is out of bounds for axis 0 with size 651
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124343350-1876544 09A07_rep_A_Oxiconazole_Nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124343350-1876544 09A07_rep_A_Oxiconazole_Nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100455077-1868999 06G10_rep_D_Niridazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100455077-1868999 06G10_rep_D_Niridazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111747114-1921617 1_A2_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111747114-1921617 1_A2_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_120_2C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130439621-1877472 13E11_rep_B_Lodoxamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130439621-1877472 13E11_rep_B_Lodoxamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_P4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153415788-1577381 Batch5_NCIH1650_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2G003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_69.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_69.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GE4_01_11514.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/udk_P4D11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (udk_P4D11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151424549-1924918 4_G10_SNF3_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151424549-1924918 4_G10_SNF3_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124400764-1862341 03B07_rep_A_Iproniazide_phosphatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124400764-1862341 03B07_rep_A_Iproniazide_phosphatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc015_pos.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc015_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/364.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153550100-1577458 Batch4_PANC0813_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112449313-1874090 10G02_rep_D_Clobetasol_propionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112449313-1874090 10G02_rep_D_Clobetasol_propionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_120_2B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GH8_01_11569.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153225204-1577291 Batch5_EBC1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D22_id_negative.mzML at line 21
index 248 is out of bounds for axis 0 with size 248
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111500569-1871510 10E01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111500569-1871510 10E01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151553129-1924988 4_G11_SNF3_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151553129-1924988 4_G11_SNF3_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/002_Urea_Day4_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_19_2022_1003_Michael_leming_liver_neg-0.0043.mzML at line 689
Premature end of data in tag binary line 29692, line 29692, column 2608499 (3_19_2022_1003_Michael_leming_liver_neg-0.0043.mzML, line 29692)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/BeautyProducts_Vol3/BP5_01_12400.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L15_id_MSn_positive.mzML at line 21
index 681 is out of bounds for axis 0 with size 681
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100855342-1869192 07F05_rep_A_Atovaquoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100855342-1869192 07F05_rep_A_Atovaquoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/630.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNS615_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101458736-1869482 99b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101458736-1869482 99b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_C1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_33_CNR_20.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_33_CNR_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_08P_A11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/talB_#5_P5C7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (talB_#5_P5C7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113334224-1874499 11H03_rep_B_Iopromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113334224-1874499 11H03_rep_B_Iopromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/torC_P3B4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (torC_P3B4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202258336-1878307 10A03_rep_A_Isopyrin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202258336-1878307 10A03_rep_A_Isopyrin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007679_032118-1CRP4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112304500-1873621 10G05_rep_D_Bendroflumethiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112304500-1873621 10G05_rep_D_Bendroflumethiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K19_id_MSn_positive.mzML at line 21
index 575 is out of bounds for axis 0 with size 575
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113251564-1922362 1_H9_IZH2_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113251564-1922362 1_H9_IZH2_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2J001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122259824-1867344 04D03_rep_D_Indomethacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122259824-1867344 04D03_rep_D_Indomethacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J4_id_MSn_positive.mzML at line 21
index 503 is out of bounds for axis 0 with size 503
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/885.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124508490-1862394 03C06_rep_A_Aztreonamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124508490-1862394 03C06_rep_A_Aztreonamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152119178-1576751 Batch1_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152716256-1577040 Batch2_RERFLCSQ1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rutC_#1_P5H9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (rutC_#1_P5H9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_206.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170125_066EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b3/d4366923f8d08a6f4fce6a6ceb1809/input_file/QC_20170125_066EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_8_P3A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (ctrl_8_P3A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I18_id_MSn_negative.mzML at line 21
index 349 is out of bounds for axis 0 with size 349
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD4_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/004_Soil_WaterIntra_1_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170127_053ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/2d/f5711b24509ba2a301395437dceb9d/input_file/SH8_20170127_053ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151053391-1924736 3_H5_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151053391-1924736 3_H5_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122036383-1879750 15F04_rep_B_Azithromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122036383-1879750 15F04_rep_B_Azithromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111833220-1872060 10B07_rep_C_Cefazolin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111833220-1872060 10B07_rep_C_Cefazolin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121351422-1866913 04H08_rep_B_Guanethidine_sulfate_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121351422-1866913 04H08_rep_B_Guanethidine_sulfate_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007610_032118-Unst1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124320948-1862309 03H11_rep_A_Proglumidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124320948-1862309 03H11_rep_A_Proglumidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153757330-1577564 Batch7_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S74.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S74.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnO_P5F1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (phnO_P5F1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw_Baseline_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_E6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S3cells_1_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GF6_01_11532.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ldtA_P4C8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (ldtA_P4C8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093100696-1879133 14D05_rep_C_Cyproterone_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093100696-1879133 14D05_rep_C_Cyproterone_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GA11_01_11458.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_A8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET117.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET117.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150417100001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Hono_xyl_Glu_LbUGT3_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_E9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gdhA_P3D11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (gdhA_P3D11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/217.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121917493-1879690 15H03_rep_B_Moxifloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121917493-1879690 15H03_rep_B_Moxifloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122859998-1880138 15B01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122859998-1880138 15B01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121507099-1879500 15G09_rep_A_Cilnidipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121507099-1879500 15G09_rep_A_Cilnidipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092054197-1878663 14D02_rep_A_Imidureab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092054197-1878663 14D02_rep_A_Imidureab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111718369-1921592 1_G9_GAP1_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111718369-1921592 1_G9_GAP1_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210313_LKM_mb_rapid_beads_30min_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092314489-1878773 14A03_rep_A_Tridihexethyl_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092314489-1878773 14A03_rep_A_Tridihexethyl_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_CABIN_sample09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111920567-1872578 10F10_rep_C_Zomepirac_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111920567-1872578 10F10_rep_C_Zomepirac_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092717557-1878962 14F04_rep_B_Misoprostola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092717557-1878962 14F04_rep_B_Misoprostola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/006_Ammonia_Day11_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ10091450.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145929057-1864091 02G04_rep_B_Chlorhexidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145929057-1864091 02G04_rep_B_Chlorhexidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNS615_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000096497/peak/20200816_ProgressCurveAnalysis_AceA_set5_eff12_t6_rep1.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000096497/peak/20200816_ProgressCurveAnalysis_AceA_set5_eff12_t6_rep1.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_73.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_73.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_B2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_B2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_15102011_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_40_CNR_40.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_40_CNR_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153424375-1577388 Batch4_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/NEC2_40EV_RA1_01_22485.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111810575-1921637 2_H7_GAP1_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111810575-1921637 2_H7_GAP1_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_E10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152812463-1577087 Batch3_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GA12_01_11909.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092949856-1879082 14F08_rep_C_(-)-Isoproterenol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092949856-1879082 14F08_rep_C_(-)-Isoproterenol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124429927-1862364 03E04_rep_A_Flufenamic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124429927-1862364 03E04_rep_A_Flufenamic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cobU_#1_P4C9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (cobU_#1_P4C9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glnQ_P4C5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (glnQ_P4C5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150418011346.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHI04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person01_plasma_youth_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person01_plasma_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E17_id_negative.mzML at line 21
index 253 is out of bounds for axis 0 with size 253
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112459063-1921990 3_E11_GPR1_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112459063-1921990 3_E11_GPR1_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101903824-1869679 07G09_rep_D_Chloroquine_diphosphatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101903824-1869679 07G09_rep_D_Chloroquine_diphosphatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH27.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D2_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E21_id_MSn_positive.mzML at line 21
index 705 is out of bounds for axis 0 with size 705
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/312.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125458929-1862984 03D07_rep_D_Pentoxifyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125458929-1862984 03D07_rep_D_Pentoxifyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153248675-1868525 06D03_rep_B_Corticosteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153248675-1868525 06D03_rep_B_Corticosteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151941301-1576674 Batch1_UMUC3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD5_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114417603-1922965 4_E2_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114417603-1922965 4_E2_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lgoT_#1_P5A5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (lgoT_#1_P5A5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153439273-1577400 Batch4_184A1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_72_CNR_50.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_72_CNR_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/BeautyProducts_Vol4/BP1_01_17273.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G15_id_MSn_negative.mzML at line 21
index 351 is out of bounds for axis 0 with size 351
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121405427-1879454 15C07_rep_A_Candesartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121405427-1879454 15C07_rep_A_Candesartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201351745-1881890 16G01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201351745-1881890 16G01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_G9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092652432-1878943 14F01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092652432-1878943 14F01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/465-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112321872-1921905 3_B8_GPR1_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112321872-1921905 3_B8_GPR1_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165826336-2227533 PAT38.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202152490-1878255 09C08_rep_D_Acefyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202152490-1878255 09C08_rep_D_Acefyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150235561-1864716 02C10_rep_B_Dizocilpine maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150235561-1864716 02C10_rep_B_Dizocilpine maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113913289-1922694 3_H7_STE2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113913289-1922694 3_H7_STE2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201753976-1882070 16F10_rep_C_Besifloxacin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201753976-1882070 16F10_rep_C_Besifloxacin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD114_P1-E-7_01_2581.mzML at line 689
Opening and ending tag mismatch: binary line 124814 and activation, line 124816, column 28 (CD114_P1-E-7_01_2581.mzML, line 124816)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlC2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraControlC2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Resveratrol_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101121001-1869308 07A02_rep_B_Serotonin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101121001-1869308 07A02_rep_B_Serotonin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211206_LKM_mb_control_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F1_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153738286-1868756 06G06_rep_C_Tosufloxacin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153738286-1868756 06G06_rep_C_Tosufloxacin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0015_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pykA_P3G10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (pykA_P3G10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_111b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_F7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_E6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113625823-1922548 2_H11_IZH2_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113625823-1922548 2_H11_IZH2_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J13_id_MSn_negative.mzML at line 21
index 299 is out of bounds for axis 0 with size 299
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122134814-1879794 15A04_rep_C_Doxycycline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122134814-1879794 15A04_rep_C_Doxycycline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-cc3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151041007-1865091 02E09_rep_D_Spironolactoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151041007-1865091 02E09_rep_D_Spironolactoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD6_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_18_CNR_47.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_18_CNR_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gsiD_#2_P5E11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (gsiD_#2_P5E11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007655_032118-1Thr3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145753326-1864014 02A11_rep_A_Pindololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145753326-1864014 02A11_rep_A_Pindololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202010364-1882177 16E01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202010364-1882177 16E01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113349398-1874511 11E08_rep_B_(-)_-Levobunolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113349398-1874511 11E08_rep_B_(-)_-Levobunolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080128/ccms_peak/20100520_Ctherm_SWG_PU1_T05_96hr_SCX_LTQ3_Run3/20100520_Ctherm_SWG_PU1_T05_96hr_SCX_LTQ3_Run3_03.mzML at line 21
index 298 is out of bounds for axis 0 with size 298
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample007.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125044921-1876835 12G01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125044921-1876835 12G01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.ros_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201822567-1882092 16C05_rep_C_Nitazoxanideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201822567-1882092 16C05_rep_C_Nitazoxanideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ROO1_40EV_RA1_01_22703.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201020758-1877738 09H06_rep_B_Sulfachloropyridazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201020758-1877738 09H06_rep_B_Sulfachloropyridazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122958114-1875883 08C04_rep_A_Papaverine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122958114-1875883 08C04_rep_A_Papaverine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K3_id.mzML at line 21
index 552 is out of bounds for axis 0 with size 552
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/grxD_P3F11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (grxD_P3F11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A4_id_MSn_positive_20240408140457.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Bai_Glu_LbUGT3_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d8_286_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 43871, column 1 (SysVirol_IFT001_Cal04RG_d8_286_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 43871)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/caiC_#3_P3A3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (caiC_#3_P3A3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_158.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nanK_P3B5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (nanK_P3B5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/87.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc2 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/192_148.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100151767-1868855 06H07_rep_D_Primaquine_diphosphatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100151767-1868855 06H07_rep_D_Primaquine_diphosphatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD4_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ2_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_E2_id_negative.mzML at line 21
index 224 is out of bounds for axis 0 with size 224
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/207-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153814955-1577579 Batch6_MDAMB435S_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/manA_P3F4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (manA_P3F4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_B2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltJ_P5H4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (gltJ_P5H4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111938343-1921712 2_G8_GAP1_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111938343-1921712 2_G8_GAP1_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122439966-1879935 15A05_rep_C_Sulbactamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122439966-1879935 15A05_rep_C_Sulbactamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122700542-1880044 15H02_rep_D_Imatiniba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122700542-1880044 15H02_rep_D_Imatiniba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200916889-1881685 16H04_rep_A_Raltitrexeda.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200916889-1881685 16H04_rep_A_Raltitrexeda.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_184.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GF10_01_17092.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B24_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202306107-1878313 10B05_rep_A_Flumethasoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202306107-1878313 10B05_rep_A_Flumethasoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/634.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A21_id_MSn_positive.mzML at line 21
index 617 is out of bounds for axis 0 with size 617
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125620707-1863050 03C11_rep_D_Tolbutamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125620707-1863050 03C11_rep_D_Tolbutamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122413791-1867404 04B06_rep_D_Niflumic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122413791-1867404 04B06_rep_D_Niflumic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152822005-1577095 Batch3_PANC0327_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151401116-1924898 4_B5_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151401116-1924898 4_B5_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111650626-1871594 10A03_rep_B_Isopyrin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111650626-1871594 10A03_rep_B_Isopyrin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNQ525_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082793/ccms_peak/raw/MTBLS227/37382-A12-1.mzXML at line 689
Premature end of data in tag peaks line 2133, line 2137, column 167597 (37382-A12-1.mzXML, line 2137)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d1_285_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 35426, column 1 (SysVirol_IFT001_Cal04RG_d1_285_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 35426)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151458769-1576440 Batch6_CALU3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152823052-1868321 06H07_rep_A_Primaquine_diphosphateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152823052-1868321 06H07_rep_A_Primaquine_diphosphateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-cc1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kduD_#3_P5H1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (kduD_#3_P5H1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_D20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/dctp_dcd_P3B8_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024912 (dctp_dcd_P3B8_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153746444-1577555 Batch7_MIAPACA2_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125601414-1877074 12A08_rep_D_Oxybenzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125601414-1877074 12A08_rep_D_Oxybenzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_123b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007528_031618-1Thr2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_93.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113716084-1874639 11H02_rep_C_Iopamidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113716084-1874639 11H02_rep_C_Iopamidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152724766-1868276 06C05_rep_A_Cephalosporanic_acid,_7-aminoa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152724766-1868276 06C05_rep_A_Cephalosporanic_acid,_7-aminoa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H21_id_MSn_positive.mzML at line 21
index 649 is out of bounds for axis 0 with size 649
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Ralstonia_pickettii_MSL_336_2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125433416-1862963 03A02_rep_D_Isoniazidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125433416-1862963 03A02_rep_D_Isoniazidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151501564-1924950 4_E4_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151501564-1924950 4_E4_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_E3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082774/ccms_peak/raw/MTBLS34/051010fluexp3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082774/ccms_peak/raw/MTBLS34/051010fluexp3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8H06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122218054-1879827 15D05_rep_C_Ambrisentanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122218054-1879827 15D05_rep_C_Ambrisentanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100842749-1869182 07H03_rep_A_Selegiline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100842749-1869182 07H03_rep_A_Selegiline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_redo_MSMS_2022_neg-0005.mzML at line 689
Premature end of data in tag binary line 611, line 611, column 1385933 (pooled_redo_MSMS_2022_neg-0005.mzML, line 611)
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/C48_II_ESI-.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_11_leg_skin_RESV_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_11_leg_skin_RESV_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223755106-2227631 PAT42.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122621722-1880014 15H09_rep_D_Sildenafila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122621722-1880014 15H09_rep_D_Sildenafila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/003_Ammonia_Day4_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101322211-1869405 07C09_rep_B_Acenocoumarola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101322211-1869405 07C09_rep_B_Acenocoumarola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_Batch03_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2C10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_66.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121646274-1867047 04A03_rep_B_Flavoxate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121646274-1867047 04A03_rep_B_Flavoxate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mtlD_#2_P4G11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (mtlD_#2_P4G11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A24_id.mzML at line 21
index 564 is out of bounds for axis 0 with size 564
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample013_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124755032-1862643 03A09_rep_B_Nitrofurantoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124755032-1862643 03A09_rep_B_Nitrofurantoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100300467-1868909 06G09_rep_D_Neostigmine_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100300467-1868909 06G09_rep_D_Neostigmine_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/blank_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153815706-1868786 06F07_rep_C_Meclocycline_sulfosalicylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153815706-1868786 06F07_rep_C_Meclocycline_sulfosalicylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/44-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/27_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123531568-1876151 08C03_rep_C_Camylofine_chlorhydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123531568-1876151 08C03_rep_C_Camylofine_chlorhydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122142722-1879800 15C08_rep_C_Fludarabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122142722-1879800 15C08_rep_C_Fludarabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_E8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114228717-1922868 4_G4_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114228717-1922868 4_G4_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180912_ES_H3K_batch2_repA_17.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B11_id.mzML at line 21
index 512 is out of bounds for axis 0 with size 512
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person29_RBC_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 81 (Person29_RBC_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102036932-1869755 07E07_rep_D_Ethionamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102036932-1869755 07E07_rep_D_Ethionamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/QC_mix.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemG_#1_P5B4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (hemG_#1_P5B4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_58_RIN_40.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_58_RIN_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mhpE_P3G11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (mhpE_P3G11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224348950-1870561 01C01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224348950-1870561 01C01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d8_278_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 37679, column 1 (SysVirol_IFL001_1918_d8_278_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 37679)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145958756-1864115 02A05_rep_B_Moroxidine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145958756-1864115 02A05_rep_B_Moroxidine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate8/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A18_id_MSn_negative.mzML at line 21
index 221 is out of bounds for axis 0 with size 221
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GC1_01_11951.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098191/peak/Plate6-48hr mzML/Plate6_HT29_C11_48hr.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD6_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malY_#3_P3G7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (malY_#3_P3G7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114825406-1875172 12E04_rep_B_Xamoterol_hemifumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114825406-1875172 12E04_rep_B_Xamoterol_hemifumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G1_id_MSn_positive.mzML at line 21
index 387 is out of bounds for axis 0 with size 387
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124547264-1876641 09G10_rep_A_Trioxsalenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124547264-1876641 09G10_rep_A_Trioxsalenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Mycolicibacterium_sp__LYG016B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100356565-1868953 06E05_rep_D_Oxcarbazepinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100356565-1868953 06E05_rep_D_Oxcarbazepinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dsbA_#5_P4B9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (dsbA_#5_P4B9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F15_id_MSn_positive.mzML at line 21
index 411 is out of bounds for axis 0 with size 411
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_04_686_prot_01_IMS_9Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202334838-1878336 10B10_rep_A_Levonordefrina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202334838-1878336 10B10_rep_A_Levonordefrina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD2_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201857536-1882120 16B10_rep_D_Felbamateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201857536-1882120 16B10_rep_D_Felbamateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112156852-1921831 3_G10_GPR1_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112156852-1921831 3_G10_GPR1_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/349.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121903155-1867155 04D02_rep_C_Vincamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121903155-1867155 04D02_rep_C_Vincamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_54.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_302_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123358977-1876076 08F06_rep_B_(-)-Emtricitabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123358977-1876076 08F06_rep_B_(-)-Emtricitabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/betA_P3D1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (betA_P3D1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G6_id_MSn_negative.mzML at line 21
index 347 is out of bounds for axis 0 with size 347
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121924291-1867172 04B06_rep_C_Niflumic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121924291-1867172 04B06_rep_C_Niflumic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/emrE_P4B9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (emrE_P4B9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample202.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ4_8 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gudX_#3_P5D10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (gudX_#3_P5D10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201236634-1877837 09A03_rep_B_Gefitinibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201236634-1877837 09A03_rep_B_Gefitinibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A4_id_MSn_negative.mzML at line 21
index 221 is out of bounds for axis 0 with size 221
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124147711-1876450 08E04_rep_D_Zafirlukasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124147711-1876450 08E04_rep_D_Zafirlukasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I19_id_MSn_positive.mzML at line 21
index 436 is out of bounds for axis 0 with size 436
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113647390-1874616 11H10_rep_C_Rabeprazole_Sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113647390-1874616 11H10_rep_C_Rabeprazole_Sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150704966-1864923 02C01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150704966-1864923 02C01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113752600-1922623 3_B1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113752600-1922623 3_B1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092757917-1878993 14H05_rep_B_Saquinavir_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092757917-1878993 14H05_rep_B_Saquinavir_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153624832-1577487 Batch4_SKOV3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample119.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200703186-1881587 16A08_rep_A_Amorolfine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200703186-1881587 16A08_rep_A_Amorolfine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/GNPS-Nudibranch/Data-MS2/Converted/200609A_sample_43.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122513321-1879961 15F07_rep_C_Benztropine_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122513321-1879961 15F07_rep_C_Benztropine_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210115_AD_65.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gatZ_P3D6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (gatZ_P3D6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081118/ccms_peak/Beers19_ms2ldaPLUS/NEGmode/Beer_multibeers_19_T10_NEG.mzXML at line 88
Invalid base64-encoded string: number of data characters (11377) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202109937-1882223 16C06_rep_D_Nateglinidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202109937-1882223 16C06_rep_D_Nateglinidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152256945-1868071 05A05_rep_D_Phenylpropanolamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152256945-1868071 05A05_rep_D_Phenylpropanolamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_CABIN_sample09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200849924-1881665 16C03_rep_A_Donepezil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200849924-1881665 16C03_rep_A_Donepezil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GD6_01_12118.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114431111-1874991 12A11_rep_A_Esmolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114431111-1874991 12A11_rep_A_Esmolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122149584-1867288 04A05_rep_D_Glutethimide,_para-aminoa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122149584-1867288 04A05_rep_D_Glutethimide,_para-aminoa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/5-S-methyl-5-thioadenosine.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-058.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-058.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD5_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG001C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fecB_P4G3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (fecB_P4G3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152402993-1576881 Batch2_NCIH2085_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_19_Dorsal_skin_EtOH_control_POS.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_19_Dorsal_skin_EtOH_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ispE_P3E1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ispE_P3E1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O3_id_MSn_positive.mzML at line 21
index 566 is out of bounds for axis 0 with size 566
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4D01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153651196-1577509 Batch4_SW1573_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150133791-1864188 02E06_rep_B_Perphenazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150133791-1864188 02E06_rep_B_Perphenazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123925371-1876337 08G09_rep_C_Benazepril_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123925371-1876337 08G09_rep_C_Benazepril_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/5_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/Blank9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-107_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrfA_P3B11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (nrfA_P3B11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_133_1B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124539259-1862418 03G04_rep_B_Xylometazoline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124539259-1862418 03G04_rep_B_Xylometazoline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202208968-1878268 10A06_rep_A_Deferoxamine_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202208968-1878268 10A06_rep_A_Deferoxamine_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101835022-1869656 07H01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101835022-1869656 07H01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223304210-1870063 01A11_rep_B_Sulfaguanidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223304210-1870063 01A11_rep_B_Sulfaguanidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125118285-1876859 12A09_rep_C_Promethazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125118285-1876859 12A09_rep_C_Promethazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD2_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224036161-1870410 01B10_rep_D_Captoprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224036161-1870410 01B10_rep_D_Captoprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I7_id_MSn_negative.mzML at line 21
index 338 is out of bounds for axis 0 with size 338
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151656497-1925042 4_H9_SNF3_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151656497-1925042 4_H9_SNF3_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007673_032118-1CRP2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case93_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case93_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_G9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180417_ES_H3K_batch6_repA_90.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_054ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/49/bee6b94511a6232a3a1e97913616e5/input_file/QC_20170127_054ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153845571-1577605 Batch6_HL60_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J15_id_MSn_positive.mzML at line 21
index 552 is out of bounds for axis 0 with size 552
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151218384-1576306 Batch5_NCIH1755_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/740.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121500945-1879496 15B04_rep_A_Bromhexine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121500945-1879496 15B04_rep_A_Bromhexine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2T008.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_E5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/galT_P5G8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (galT_P5G8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample166_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_52_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_52_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_A5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purB_P4B7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (purB_P4B7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_RBC_1h_NEG.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer3_RBC_1h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120853342-1879220 14B05_rep_D_Levopropoxyphene_napsylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120853342-1879220 14B05_rep_D_Levopropoxyphene_napsylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A13_id.mzML at line 21
index 517 is out of bounds for axis 0 with size 517
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1145.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1145.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125013886-1862754 03G03_rep_C_Antimycin_Aa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125013886-1862754 03G03_rep_C_Antimycin_Aa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A1Bs10mm_black_P1-A-4_01_23055.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007518_031618-0.01Thr6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125525837-1877047 12D11_rep_D_L(-)-vesamicol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125525837-1877047 12D11_rep_D_L(-)-vesamicol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/OVA1_20EV_RA8_01_22612.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_079b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bioD_P4H11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (bioD_P4H11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5C06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151012726-1865069 02E04_rep_D_Dehydrocholic acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151012726-1865069 02E04_rep_D_Dehydrocholic acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_0124_190125063104.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2D03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151325599-1576362 Batch6_SR8714_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102005184-1869729 07B07_rep_D_Tiaprofenic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102005184-1869729 07B07_rep_D_Tiaprofenic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28022021_Batch02_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153308023-1577326 Batch4_NCIH2009_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpBud2_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_B7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_B7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114818191-1875166 12C05_rep_B_Metyraponea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114818191-1875166 12C05_rep_B_Metyraponea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152305255-1576835 Batch1_HCC1806_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007530_031618-1Thr2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR33h1a.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/112_98.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tdh_P4B7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (tdh_P4B7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_A12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V7_EDTAk3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113202093-1874425 11A11_rep_B_Sulconazole_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113202093-1874425 11A11_rep_B_Sulconazole_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112636448-1874175 11A06_rep_A_Piromidic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112636448-1874175 11A06_rep_A_Piromidic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S01_dilute_190131203239.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113935252-1874751 11B05_rep_D_Cefsulodin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113935252-1874751 11B05_rep_D_Cefsulodin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092124268-1878686 14A04_rep_A_Penbutolol_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092124268-1878686 14A04_rep_A_Penbutolol_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152708157-1868263 06D01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152708157-1868263 06D01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-26d.mzXML at line 689
Premature end of data in tag peaks line 5964, line 5968, column 7671 (YnYn-26d.mzXML, line 5968)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_63.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151406532-1576396 Batch6_HCC1937_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc019_neg.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc019_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113555544-1922522 2_G2_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113555544-1922522 2_G2_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-195_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pstB_P5H4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (pstB_P5H4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfA_#2_P4A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (hyfA_#2_P4A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/003_Ammonia_Day14_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101944422-1869712 07G07_rep_D_Pregnenoloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101944422-1869712 07G07_rep_D_Pregnenoloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130427582-1877463 13A06_rep_B_Floxuridinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130427582-1877463 13A06_rep_B_Floxuridinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101014726-1869255 07B07_rep_B_Tiaprofenic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101014726-1869255 07B07_rep_B_Tiaprofenic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_35_2022_1003_Michael_leming_liver_neg-0.0061.mzML at line 689
Premature end of data in tag binary line 14758, line 14758, column 511635 (3_35_2022_1003_Michael_leming_liver_neg-0.0061.mzML, line 14758)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7H04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151111526-1865115 02C04_rep_D_Cyproheptadine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151111526-1865115 02C04_rep_D_Cyproheptadine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_C1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100656695-1869097 07E06_rep_A_Rifampicina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100656695-1869097 07E06_rep_A_Rifampicina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150921078-1865029 02H01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150921078-1865029 02H01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J7_id_negative.mzML at line 21
index 265 is out of bounds for axis 0 with size 265
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ushA_P3A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (ushA_P3A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/186-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5G09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_E4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152135448-1576764 Batch2_NCIH358_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201354441-1881892 16E07_rep_B_Enalaprilat_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201354441-1881892 16E07_rep_B_Enalaprilat_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101423458-1869454 07D11_rep_C_Sulfasalazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101423458-1869454 07D11_rep_C_Sulfasalazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD1_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L73.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L73.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_C6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121640918-1879571 15F07_rep_A_Benztropine_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121640918-1879571 15F07_rep_A_Benztropine_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D13_id_MSn_positive.mzML at line 21
index 695 is out of bounds for axis 0 with size 695
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151144197-1576278 Batch5_SBC5_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152006631-1867937 05G11_rep_C_Fusidic_acid_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152006631-1867937 05G11_rep_C_Fusidic_acid_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/002_Urea_Day0_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_C4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150046447-1864151 02E09_rep_B_Spironolactonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150046447-1864151 02E09_rep_B_Spironolactonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121142958-1879348 14G01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121142958-1879348 14G01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102033361-1869752 07E04_rep_D_Miglitolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102033361-1869752 07E04_rep_D_Miglitolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153103843-1577226 Batch3_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person3_Blood_POS.mzXML at line 689
attributes construct error, line 38, column 73 (Person3_Blood_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD5_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_03_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_03_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A7_id_MSn_negative_20240503180425.mzML at line 21
index 300 is out of bounds for axis 0 with size 300
Error processing file: /data/datasets/server/MassIVE/MSV000088436/peak/11112021-peaklist/phrma_urine_M_12.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample094_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153306730-1577325 Batch4_MDAMB435S_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5E04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cobU_#1_P4C9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (cobU_#1_P4C9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/ccms_peak/Raw_Spectrum_Files/ALZ_CBM_P_E2E3_AD_31Jan18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.grif_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000092960/raw/HILIC_plusDDA/HILIC/20221111-JC-471_HILIC_222_01.mzML at line 689
Invalid character: Char 0x0 out of allowed range
, line 3842, column 69721 (20221111-JC-471_HILIC_222_01.mzML, line 3842)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_69_CNR_50.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_69_CNR_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_67.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125108445-1876852 12H09_rep_C_Urosiolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125108445-1876852 12H09_rep_C_Urosiolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125000371-1862743 03B04_rep_C_Tranylcypromine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125000371-1862743 03B04_rep_C_Tranylcypromine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121017888-1879284 14A08_rep_D_Piretanidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121017888-1879284 14A08_rep_D_Piretanidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA26.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112231117-1873594 10D08_rep_D_Chlorotrianiseneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112231117-1873594 10D08_rep_D_Chlorotrianiseneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw3_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3B09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/znuC_#2_P4F5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (znuC_#2_P4F5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/218.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124404554-1862344 03F05_rep_A_Gemfibrozilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124404554-1862344 03F05_rep_A_Gemfibrozilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152506544-1576932 Batch2_OVCAR8_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079484/ccms_peak/1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 2556, column 1 (1a.mzXML, line 2556)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_62.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bioC_P3E5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (bioC_P3E5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine75.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine75.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudE_P6B8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (nudE_P6B8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114616531-1875071 12F10_rep_A_Iodipamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114616531-1875071 12F10_rep_A_Iodipamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122004136-1867203 04E04_rep_C_Homochlorcyclizine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122004136-1867203 04E04_rep_C_Homochlorcyclizine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E18_id_MSn_negative.mzML at line 21
index 318 is out of bounds for axis 0 with size 318
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d1_284_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 34738, column 1 (SysVirol_IFT001_Cal04RG_d1_284_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 34738)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111926803-1921702 2_D1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111926803-1921702 2_D1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_90.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121051294-1879309 14E06_rep_D_Topiramateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121051294-1879309 14E06_rep_D_Topiramateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007604_031718-buffer ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample126.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122349611-1879897 15G11_rep_C_Fosinoprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122349611-1879897 15G11_rep_C_Fosinoprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/607.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122528802-1867465 05C11_rep_A_Clozapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122528802-1867465 05C11_rep_A_Clozapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_49.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125327574-1876957 12G05_rep_D_Phenoxybenzamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125327574-1876957 12G05_rep_D_Phenoxybenzamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atoA_#1_P4E11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (atoA_#1_P4E11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124706520-1876703 09H01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124706520-1876703 09H01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N18_id_MSn_negative.mzML at line 21
index 344 is out of bounds for axis 0 with size 344
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112342176-1874036 10A06_rep_D_Deferoxamine_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112342176-1874036 10A06_rep_D_Deferoxamine_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/632.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100908862-1869203 07D09_rep_A_Budesonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100908862-1869203 07D09_rep_A_Budesonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1110.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpX_P4C8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (glpX_P4C8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample32n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G13_id_negative.mzML at line 21
index 267 is out of bounds for axis 0 with size 267
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_4_B_rep_1_B-D4_1_5853.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124841878-1876743 12E05_rep_C_Rolipramb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124841878-1876743 12E05_rep_C_Rolipramb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130457319-1877486 13F07_rep_B_Moxonidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130457319-1877486 13F07_rep_B_Moxonidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122401587-1867394 04H11_rep_D_Fluphenazine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122401587-1867394 04H11_rep_D_Fluphenazine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yihV_#1_P4F9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (yihV_#1_P4F9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121344744-1866908 04B04_rep_B_Norethindronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121344744-1866908 04B04_rep_B_Norethindronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101935739-1869705 07F09_rep_D_Phenindionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101935739-1869705 07F09_rep_D_Phenindionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009421_IBD200_E5_B6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/450.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150658674-1864918 02F03_rep_C_Loxapine succinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150658674-1864918 02F03_rep_C_Loxapine succinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/250.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114444561-1875002 12H08_rep_A_Deoxycorticosteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114444561-1875002 12H08_rep_A_Deoxycorticosteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190112_ES_H3K_batch13_repA_193.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124349460-1862332 03C09_rep_A_Pentolinium_bitartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124349460-1862332 03C09_rep_A_Pentolinium_bitartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_12_male_2022_1017_Michael_neg-0.0032.mzML at line 689
Premature end of data in tag binary line 24899, line 24899, column 1435704 (2_12_male_2022_1017_Michael_neg-0.0032.mzML, line 24899)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control123_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control123_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165856423-2227561 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150418011346.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152644106-1577013 Batch2_NCIH838_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_A8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ttdA_P3H4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (ttdA_P3H4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30167 - GI-18-356.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222826607-1869855 01E03_rep_A_Moxisylyte hydrochoridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222826607-1869855 01E03_rep_A_Moxisylyte hydrochoridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201650022-1878022 09F11_rep_C_Cefmetazole_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201650022-1878022 09F11_rep_C_Cefmetazole_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_A2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM5S004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_08P_A9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/002_Urea_Day14_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_4_P_rep_4_B-A6_1_5638.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acrB_P6H5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (acrB_P6H5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152010416-1867940 05G07_rep_C_GBR_12909_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152010416-1867940 05G07_rep_C_GBR_12909_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152652521-1577020 Batch1_NCIH1299_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094202/ccms_peak/3DMM_pos_raw/Plate1and2/P1_B9.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P4_id.mzML at line 21
index 561 is out of bounds for axis 0 with size 561
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100805873-1869153 07H01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100805873-1869153 07H01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201113227-1881771 16A02_rep_B_Nelfinavir_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201113227-1881771 16A02_rep_B_Nelfinavir_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gloB_#1_P5H1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (gloB_#1_P5H1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_57.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D3_id_MSn_positive.mzML at line 21
index 452 is out of bounds for axis 0 with size 452
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdpB_#1_P4B12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (kdpB_#1_P4B12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GA12_01_11459.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124402019-1862342 03B07_rep_A_Iproniazide_phosphateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124402019-1862342 03B07_rep_A_Iproniazide_phosphateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224309047-1870529 01A10_rep_D_Hydrochlorothiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224309047-1870529 01A10_rep_D_Hydrochlorothiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1146.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1146.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150405034-1924386 1_E9_RGT2_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150405034-1924386 1_E9_RGT2_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112129170-1873545 10G01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112129170-1873545 10G01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114549055-1875050 12B02_rep_A_Cortisol_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114549055-1875050 12B02_rep_A_Cortisol_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152624937-1576997 Batch1_HCC15_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ribD_P3B10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ribD_P3B10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007627_032118-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1539.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1539.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211005_LKM_beads_mb_silica1_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150321852-1864751 02G11_rep_B_Dihydroergotamine tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150321852-1864751 02G11_rep_B_Dihydroergotamine tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223936910-1870365 01C09_rep_C_Ethambutol dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223936910-1870365 01C09_rep_C_Ethambutol dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-qc_high (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201443204-1877930 09D07_rep_C_Beta-Escina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201443204-1877930 09D07_rep_C_Beta-Escina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H13_id_MSn_negative.mzML at line 21
index 304 is out of bounds for axis 0 with size 304
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125547008-1877063 12B01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125547008-1877063 12B01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151801941-1576591 Batch3_5637_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I22_id_MSn_negative.mzML at line 21
index 281 is out of bounds for axis 0 with size 281
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123056737-1875929 08H03_rep_A_Dipivefrin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123056737-1875929 08H03_rep_A_Dipivefrin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152537334-1868193 05G05_rep_D_Probucolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152537334-1868193 05G05_rep_D_Probucolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1K007.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 Column1_test_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F17_id_MSn_negative.mzML at line 21
index 320 is out of bounds for axis 0 with size 320
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample021_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124801137-1862648 03A03_rep_B_Pentylenetetrazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124801137-1862648 03A03_rep_B_Pentylenetetrazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152440953-1576911 Batch1_NCIH1437_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101247040-1869377 07H06_rep_B_Nifuroxazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101247040-1869377 07H06_rep_B_Nifuroxazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124154011-1876455 08G04_rep_D_Pyridoxine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124154011-1876455 08G04_rep_D_Pyridoxine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_112.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603154001557-1577669 Batch6_SF539_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/cellb-malt-sucr-tre_ptsH_P3G2_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024870 (cellb-malt-sucr-tre_ptsH_P3G2_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD4_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glmS_#1_P6F11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (glmS_#1_P6F11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/4.5_4OI.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dapE_P5B12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (dapE_P5B12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/LiLi-11d.mzXML at line 689
Premature end of data in tag msRun line 5, line 1638, column 1 (LiLi-11d.mzXML, line 1638)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GB12_01_11919.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0013_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0013_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1C04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092259/ccms_peak/Sample0006.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc6 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201351515-1877892 09E02_rep_C_Pranoprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201351515-1877892 09E02_rep_C_Pranoprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ2_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092744/ccms_peak/WT_CoQ6_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD3_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223735401-1870271 01A03_rep_C_Allantoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223735401-1870271 01A03_rep_C_Allantoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114118346-1874834 11A06_rep_D_Piromidic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114118346-1874834 11A06_rep_D_Piromidic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123241146-1876013 08H05_rep_B_Tomoxetine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123241146-1876013 08H05_rep_B_Tomoxetine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/801.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemE_P3B3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (hemE_P3B3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152858247-1577126 Batch5_HOP92_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151310003-1924854 3_C10_SNF3_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151310003-1924854 3_C10_SNF3_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112047592-1921771 2_B11_GAP1_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112047592-1921771 2_B11_GAP1_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_04_497_prot_35_IMS_9Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_aqueous_longstudy_230215_175.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007680_032118-1CRP4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/uamr_murC_P4C7_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024911 (uamr_murC_P4C7_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person21_blood_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 83 (Person21_blood_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6C08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2G001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/771.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_ehigh.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092708582-1878955 14G07_rep_B_Meropenemb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092708582-1878955 14G07_rep_B_Meropenemb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122135881-1867277 04F07_rep_D_Acemetacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122135881-1867277 04F07_rep_D_Acemetacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/277.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153003094-1577181 Batch3_SCABER_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151403996-1576394 Batch6_CALU1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150502796-1924434 1_D3_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150502796-1924434 1_D3_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202546077-1878439 10A07_rep_A_Mephentermine_hemisulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202546077-1878439 10A07_rep_A_Mephentermine_hemisulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_110.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_C11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A17_id_MSn_positive.mzML at line 21
index 669 is out of bounds for axis 0 with size 669
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150110778-1864170 02F08_rep_B_Clindamycin hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150110778-1864170 02F08_rep_B_Clindamycin hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P16_id_MSn_positive.mzML at line 21
index 675 is out of bounds for axis 0 with size 675
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201131707-1881785 16E02_rep_B_Cefuroxime_axetila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201131707-1881785 16E02_rep_B_Cefuroxime_axetila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092557397-1878900 14H02_rep_B_Mecamylamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092557397-1878900 14H02_rep_B_Mecamylamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6A08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/777.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GF4_01_12150.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152016992-1576702 Batch1_HCC1143_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_133_3A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150659191-1924534 2_B3_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150659191-1924534 2_B3_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114740471-1875136 12F07_rep_B_Bephenium_hydroxynaphthoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114740471-1875136 12F07_rep_B_Bephenium_hydroxynaphthoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152718580-1577042 Batch2_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124727367-1876720 09D08_rep_A_Thiamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124727367-1876720 09D08_rep_A_Thiamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G22_id_MSn_negative.mzML at line 21
index 309 is out of bounds for axis 0 with size 309
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112538679-1874129 10H07_rep_D_Lithocholic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112538679-1874129 10H07_rep_D_Lithocholic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7E01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fepG_P4B6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (fepG_P4B6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150651000-1924527 2_A4_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150651000-1924527 2_A4_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G20_id_MSn_negative.mzML at line 21
index 312 is out of bounds for axis 0 with size 312
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_C6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_212.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151129210-1576266 Batch5_SBC5_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaY_P3F2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (paaY_P3F2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A3_id_MSn_positive.mzML at line 21
index 540 is out of bounds for axis 0 with size 540
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_48.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_48.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/011_20uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150418020025.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD4_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_C7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151258295-1576339 Batch5_SBC5_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150855532-1865009 02B05_rep_D_Azathioprineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150855532-1865009 02B05_rep_D_Azathioprineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A13_id_MSn_positive.mzML at line 21
index 702 is out of bounds for axis 0 with size 702
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M6_id_MSn_negative.mzML at line 21
index 370 is out of bounds for axis 0 with size 370
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case162_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case162_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P12_id_MSn_positive.mzML at line 21
index 368 is out of bounds for axis 0 with size 368
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_QC2.mzXML at line 689
Premature end of data in tag peaks line 14978, line 14982, column 40426 (L_QC2.mzXML, line 14982)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170125_027EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e6/62860d56f2dc104d294effc6245ec7/input_file/MMW4_20170125_027EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007700_032218-5CRP4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S112.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S112.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3D02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125543490-1863020 03D09_rep_D_Salbutamola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125543490-1863020 03D09_rep_D_Salbutamola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/446.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092207078-1878720 14F11_rep_A_Toltrazurila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092207078-1878720 14F11_rep_A_Toltrazurila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100601138-1869052 07B11_rep_A_Ethamivanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100601138-1869052 07B11_rep_A_Ethamivanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152404206-1868122 05F08_rep_D_Nafronyl_oxalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152404206-1868122 05F08_rep_D_Nafronyl_oxalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124526316-1876626 09D07_rep_A_Beta-Escina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124526316-1876626 09D07_rep_A_Beta-Escina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_blank_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_blank_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115022270-1875267 12D04_rep_B_2-Aminobenzenesulfonamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115022270-1875267 12D04_rep_B_2-Aminobenzenesulfonamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L11_id_MSn_positive.mzML at line 21
index 396 is out of bounds for axis 0 with size 396
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample198.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223717849-1870257 01F06_rep_C_Acetohexamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223717849-1870257 01F06_rep_C_Acetohexamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_59_AC+_49.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR224h2a.mzML at line 689
attributes construct error, line 273181, column 48 (pBlateR224h2a.mzML, line 273181)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/967.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152549981-1576968 Batch2_RERFLCSQ1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121717116-1867072 04A11_rep_C_Alprenolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121717116-1867072 04A11_rep_C_Alprenolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_19040307_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/927.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121354866-1879446 15G05_rep_A_Olmesartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121354866-1879446 15G05_rep_A_Olmesartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101127394-1869313 07E10_rep_B_Mesoridazine_besylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101127394-1869313 07E10_rep_B_Mesoridazine_besylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130206235-1877353 13E10_rep_B_Pivampicillina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130206235-1877353 13E10_rep_B_Pivampicillina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009588_IBD200_E15_B4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123232382-1867800 05D11_rep_B_Droperidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123232382-1867800 05D11_rep_B_Droperidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_dilute_190131204915.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152934784-1577157 Batch3_PANC0327_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.alb_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180428_ES_H3K_batch3_repC_38.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_05_665_prot_52_IMS_18Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_P_E3E4_C_02Feb18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control133_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control133_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082000/ccms_peak/Round1/A39_RA9_01_7048.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000082000/ccms_peak/Round1/A39_RA9_01_7048.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dacA_P4C10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (dacA_P4C10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121015257-1879282 14C05_rep_D_Meprylcaine_hydrochloride_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121015257-1879282 14C05_rep_D_Meprylcaine_hydrochloride_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1210.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1210.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145754599-1864015 02B07_rep_A_Guanabenz acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145754599-1864015 02B07_rep_A_Guanabenz acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/blank_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ5_4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD5_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aaeA_#1_P4C4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (aaeA_#1_P4C4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112624683-1922065 4_D1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112624683-1922065 4_D1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111516806-1921102 1_C7_GAP1_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111516806-1921102 1_C7_GAP1_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124029703-1876388 08D08_rep_D_Temozolomidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124029703-1876388 08D08_rep_D_Temozolomidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170207_069EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/60/3f8b68f0ac6a392bc503839db26152/input_file/SH10_20170207_069EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125818948-1863148 04F04_rep_A_Glafenine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125818948-1863148 04F04_rep_A_Glafenine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151734280-1576569 Batch4_DMS53_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine68cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine68cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1152.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Negative_FGF1_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P6_id_MSn_positive.mzML at line 21
index 677 is out of bounds for axis 0 with size 677
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Variovorax_LYG003A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152018371-1576703 Batch1_HCC1143_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112935805-1874316 11B02_rep_A_Auranofina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112935805-1874316 11B02_rep_A_Auranofina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152038641-1576719 Batch1_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4H12_160601173612.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2F12_160528161015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wzzB_P3E2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (wzzB_P3E2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/006_Ammonia_Day2_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F24_id.mzML at line 21
index 536 is out of bounds for axis 0 with size 536
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glsA_#1_P4B9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (glsA_#1_P4B9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case253_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case253_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150139185-1864673 02C09_rep_B_Nomifensine maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150139185-1864673 02C09_rep_B_Nomifensine maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151717602-1576555 Batch7_SKMEL2_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L5_id_MSn_negative.mzML at line 21
index 348 is out of bounds for axis 0 with size 348
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122747491-1867577 05C04_rep_A_Desipramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122747491-1867577 05C04_rep_A_Desipramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_255.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007683_032118-1CRP6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYD020.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145622130-1863940 02E03_rep_A_Amfepramone hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145622130-1863940 02E03_rep_A_Amfepramone hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fecA_P5D8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (fecA_P5D8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093158074-1879179 14B09_rep_C_Ondansetron_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093158074-1879179 14B09_rep_C_Ondansetron_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094559/updates/2024-11-22_apatan_044a6e50/raw/08132024/AP_649.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_63.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_63.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lptF_#3_P5G7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (lptF_#3_P5G7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113905418-1922687 3_B4_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113905418-1922687 3_B4_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/297.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/old/MC_Neg_Reps_1_2_3_4/MC_Neg_Reps_1_2_3_4/DataMC_Neg_1_2_3_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/old/MC_Neg_Reps_1_2_3_4/MC_Neg_Reps_1_2_3_4/DataMC_Neg_1_2_3_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122516615-1867455 05F04_rep_A_Amethopterin_(R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122516615-1867455 05F04_rep_A_Amethopterin_(R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kgtP_P4B9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (kgtP_P4B9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/garP_P4F12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (garP_P4F12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000091760/raw/TC13_pellet.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/411.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Blank_pesticide_170405155523.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET102.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET102.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GC3_01_11481.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample036.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/citrL_argG_P4F7_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (citrL_argG_P4F7_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR224h2a.mzML at line 689
Opening and ending tag mismatch: scanList line 24070 and binaryDataArray, line 24075, column 31 (pBpumR224h2a.mzML, line 24075)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121340793-1866905 04B03_rep_B_Diphenidol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121340793-1866905 04B03_rep_B_Diphenidol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202456184-1878400 10F02_rep_A_Alclometasone_dipropionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202456184-1878400 10F02_rep_A_Alclometasone_dipropionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30117 - GI-14-796.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/169_131.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145708967-1863978 02D02_rep_A_Naloxone hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145708967-1863978 02D02_rep_A_Naloxone hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153153645-1577266 Batch5_NCIH23_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rfbC_P4H5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (rfbC_P4H5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122018139-1879736 15E04_rep_B_Aripiprazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122018139-1879736 15E04_rep_B_Aripiprazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2H07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1142.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1142.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224311501-1870531 01B09_rep_D_Idoxuridinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224311501-1870531 01B09_rep_D_Idoxuridinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113256186-1922366 1_F8_IZH2_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113256186-1922366 1_F8_IZH2_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200557461-1881538 16D02_rep_A_Aminacrineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200557461-1881538 16D02_rep_A_Aminacrineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202322049-1878326 10D07_rep_A_Diethylstilbestrola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202322049-1878326 10D07_rep_A_Diethylstilbestrola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_06_CNR_53.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_06_CNR_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_B6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/867.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_A8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009678_IBD200_E21_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8F02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088286/raw/210916_tanaka13.mzML at line 689
error parsing attribute name, line 751247, column 1270 (210916_tanaka13.mzML, line 751247)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170125_014EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/24/cd5d9cb477e1396f81c8d62e155945/input_file/MMW3_20170125_014EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GB12_01_17159.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190124_ES_H3K_batch15_repC_125.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121755376-1879628 15F11_rep_B_Bifonazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121755376-1879628 15F11_rep_B_Bifonazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151337753-1924878 3_E5_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151337753-1924878 3_E5_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113557396-1874576 11D03_rep_C_Cefoxitin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113557396-1874576 11D03_rep_C_Cefoxitin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A4_id_MSn_negative.mzML at line 21
index 147 is out of bounds for axis 0 with size 147
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125015469-1876813 12D01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125015469-1876813 12D01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P6_id_negative.mzML at line 21
index 266 is out of bounds for axis 0 with size 266
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2C03P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-067_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_G5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170125_023EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e1/41dabbd316462812b4c116d58d0983/input_file/SH7_20170125_023EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_153.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151640614-1576524 Batch7_7860_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G21_id_MSn_positive.mzML at line 21
index 501 is out of bounds for axis 0 with size 501
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153350235-1577360 Batch5_SW620_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBmegR124h3a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151710339-1576549 Batch4_DMS53_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wecG_P3E6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (wecG_P3E6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD6_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124253350-1862287 03G01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124253350-1862287 03G01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130613547-1877546 13C09_rep_C_Norgestimateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130613547-1877546 13C09_rep_C_Norgestimateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152907371-1868356 06F05_rep_A_Linezolida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152907371-1868356 06F05_rep_A_Linezolida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mtgA_P4A5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (mtgA_P4A5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ5_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093010960-1879098 14E02_rep_C_(S)-propranolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093010960-1879098 14E02_rep_C_(S)-propranolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GF8_01_17090.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrdB_P4E10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (nrdB_P4E10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mdaB_P5C3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (mdaB_P5C3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2G04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/927.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/982.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_A3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152116533-1576749 Batch1A_UMUC3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_12_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113109872-1874384 11G10_rep_B_Phthalylsulfathiazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113109872-1874384 11G10_rep_B_Phthalylsulfathiazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153841996-1577602 Batch6_NCIH526_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007530_031618-1Thr2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/883.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD3_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_H4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151407723-1576397 Batch6_HCC1937_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GG7_01_17226.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-020.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-020.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153122630-1577241 Batch3_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P18_id_MSn_negative.mzML at line 21
index 369 is out of bounds for axis 0 with size 369
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202544565-1878438 10A07_rep_A_Mephentermine_hemisulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202544565-1878438 10A07_rep_A_Mephentermine_hemisulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30098 - GI-16-545.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153412035-1577378 Batch4_NCIH1651_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-cc2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224057429-1870426 01G05_rep_D_Chlorpromazine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224057429-1870426 01G05_rep_D_Chlorpromazine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078881/ccms_peak/7-TEOBROMA CACAO_MS2_1-2_01_1863.mzXML at line 689
Premature end of data in tag peaks line 17166, line 17170, column 2677 (7-TEOBROMA CACAO_MS2_1-2_01_1863.mzXML, line 17170)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201506695-1881946 16A08_rep_C_Amorolfine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201506695-1881946 16A08_rep_C_Amorolfine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1037.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153138637-1577254 Batch4_NCIH2009_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I8_id_negative.mzML at line 21
index 241 is out of bounds for axis 0 with size 241
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD5_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092259/ccms_peak/Sample0010.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gloA_#1_P4E3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (gloA_#1_P4E3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152104657-1867984 05B03_rep_C_Practolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152104657-1867984 05B03_rep_C_Practolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F23_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_131.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100408934-1868963 06D01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100408934-1868963 06D01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090549/updates/2023-02-07_bsedio_eb5d1a0f/peak/Madidi_mzXML/MDP0201.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125026289-1876821 12A02_rep_C_Niacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125026289-1876821 12A02_rep_C_Niacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151236526-1576321 Batch5_PC9_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person12_RBC_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Person12_RBC_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_B7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122346265-1867382 04B08_rep_D_Retinoic_acid_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122346265-1867382 04B08_rep_D_Retinoic_acid_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153408443-1577375 Batch3_KNS62_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GC3_01_17164.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123238612-1876011 08D11_rep_B_Zopicloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123238612-1876011 08D11_rep_B_Zopicloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ6_2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101002386-1869245 07G05_rep_B_Tobramycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101002386-1869245 07G05_rep_B_Tobramycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152746239-1577065 Batch1_769P_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fhuB_P5A8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (fhuB_P5A8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125939548-1877243 13H10_rep_A_Levocabastine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125939548-1877243 13H10_rep_A_Levocabastine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153637425-1868707 06D11_rep_C_Epiandrosteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153637425-1868707 06D11_rep_C_Epiandrosteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_4_40x_2022_1006_Michael_pos-0.0022.mzML at line 689
Premature end of data in tag binary line 4605, line 4605, column 133462 (1_4_40x_2022_1006_Michael_pos-0.0022.mzML, line 4605)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152853575-1577122 Batch3_RERFLCA1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095260/peak/mzML/B20.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000095260/peak/mzML/B20.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ6_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201828568-1882097 16H01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201828568-1882097 16H01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case129_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case129_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (27).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/449.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180915_ES_H3K_batch2_repB_25.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000081039/ccms_peak/raw/MTBLS293/mtab_R1_Dyhram_2014_1017_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130728922-1877606 13E09_rep_C_Gabexate_mesilateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130728922-1877606 13E09_rep_C_Gabexate_mesilateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111649070-1921567 1_H11_GAP1_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111649070-1921567 1_H11_GAP1_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GB5_01_12083.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/XYT-12d.mzXML at line 689
Premature end of data in tag peaks line 5014, line 5018, column 3574 (XYT-12d.mzXML, line 5018)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124908974-1862702 03B06_rep_B_Aceclofenaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124908974-1862702 03B06_rep_B_Aceclofenaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control24_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control24_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152013161-1576699 Batch1_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111424995-1921058 1_B5_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111424995-1921058 1_B5_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBmegR331_5h1a.mzML at line 21
index 3098 is out of bounds for axis 0 with size 3098
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysW_P4E4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (cysW_P4E4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180630_ES_H3K_batch9_repA_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151412395-1576401 Batch6_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097739/peak/C10_1 MSMS neg.mzML at line 640
'selectedIonList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224332669-1870548 01C11_rep_D_Antipyrine, 4-hydroxyb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224332669-1870548 01C11_rep_D_Antipyrine, 4-hydroxyb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095828/peak/Con2-LC-neg.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007577_031718-5CRP6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152605808-1576981 Batch2_SW900_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201928162-1882144 16G06_rep_D_Ampiroxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201928162-1882144 16G06_rep_D_Ampiroxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_91.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_91.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2C04P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150908212-1865019 02F08_rep_D_Clindamycin hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150908212-1865019 02F08_rep_D_Clindamycin hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101258381-1869386 07E03_rep_B_Thiostreptonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101258381-1869386 07E03_rep_B_Thiostreptonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LIM1_20EV_RA6_01_22673.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121227019-1879381 14C11_rep_D_Vorinostatb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121227019-1879381 14C11_rep_D_Vorinostatb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_D8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hmp_#1_P4H6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (hmp_#1_P4H6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yehW_P4G11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (yehW_P4G11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145909452-1864075 02A08_rep_A_Diazoxidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145909452-1864075 02A08_rep_A_Diazoxidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_SERUM_V1_SSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K8_id_MSn_negative.mzML at line 21
index 329 is out of bounds for axis 0 with size 329
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD3_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101122289-1869309 07C11_rep_B_Cyclizine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101122289-1869309 07C11_rep_B_Cyclizine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR33h1a.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purD_P3H1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (purD_P3H1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223353585-1870101 01A02_rep_B_Azaguanine-8a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223353585-1870101 01A02_rep_B_Azaguanine-8a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125046727-1862780 03D11_rep_C_Camptothecine_(S,+)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125046727-1862780 03D11_rep_C_Camptothecine_(S,+)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fabH_P5C12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (fabH_P5C12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/udp_P5B4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (udp_P5B4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_40_NOR_30.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_40_NOR_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180916_ES_H3K_batch2_repC_25.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153825624-1577588 Batch6_DU4475_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlA2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlA2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092635499-1878930 14G02_rep_B_Perindoprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092635499-1878930 14G02_rep_B_Perindoprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124459897-1876607 09A02_rep_A_Sulmazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124459897-1876607 09A02_rep_A_Sulmazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151514599-1576452 Batch7_KM12_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_17_Liver_CMC_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 88 (Mouse_17_Liver_CMC_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123450571-1876118 08A03_rep_B_Mevastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123450571-1876118 08A03_rep_B_Mevastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate23/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-119_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/galM_P3F3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (galM_P3F3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122817634-1875804 08G07_rep_A_Racecadotrila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122817634-1875804 08G07_rep_A_Racecadotrila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201023341-1877740 09E05_rep_B_Mirabegrona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201023341-1877740 09E05_rep_B_Mirabegrona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082768/ccms_peak/raw/MTBLS31/012611flubatch3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082768/ccms_peak/raw/MTBLS31/012611flubatch3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-2-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3B06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224002232-1870384 01A06_rep_D_Atracurium besylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224002232-1870384 01A06_rep_D_Atracurium besylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202039880-1878198 09B07_rep_D_Lanatoside_Ca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202039880-1878198 09B07_rep_D_Lanatoside_Ca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153755755-1868770 06G02_rep_C_Tropisetron_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153755755-1868770 06G02_rep_C_Tropisetron_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_sp_WTHI08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlC3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraControlC3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_68.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112618227-1922059 4_E11_GPR1_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112618227-1922059 4_E11_GPR1_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1146.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_E3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201951357-1878160 09G11_rep_D_Doxofyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201951357-1878160 09G11_rep_D_Doxofyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD3_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111336100-1871445 10C04_rep_B_Medrysonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111336100-1871445 10C04_rep_B_Medrysonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112421978-1874068 10C02_rep_D_Nadidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112421978-1874068 10C02_rep_D_Nadidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180628_ES_H3K_bacth8_repC_114.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G10_id_MSn_positive.mzML at line 21
index 437 is out of bounds for axis 0 with size 437
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170209_034ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/3b/388541c4ae39e0efce626fec7d7453/input_file/MMW5_20170209_034ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223409346-1870113 01H01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223409346-1870113 01H01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113926786-1922706 3_B7_STE2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113926786-1922706 3_B7_STE2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_161.mzXML at line 689
Premature end of data in tag peaks line 22955, line 22959, column 7748 (20121114_161.mzXML, line 22959)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_C11_id_MSn_positive_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ2_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yhiJ_P5E6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (yhiJ_P5E6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150132496-1864187 02E06_rep_B_Perphenazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150132496-1864187 02E06_rep_B_Perphenazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125025245-1862763 03G04_rep_C_Xylometazoline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125025245-1862763 03G04_rep_C_Xylometazoline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009443_IBD200_E6_B8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nagB_P3G6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (nagB_P3G6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_A8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200616361-1881552 16C01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200616361-1881552 16C01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pitA_P5A5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (pitA_P5A5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202553889-1878445 10B01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202553889-1878445 10B01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223758625-2227634 PAT33.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152446709-1868154 05D06_rep_D_Hycanthonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152446709-1868154 05D06_rep_D_Hycanthonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150438799-1864810 02H10_rep_C_Dihydrostreptomycin sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150438799-1864810 02H10_rep_C_Dihydrostreptomycin sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_A6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A4_id_MSn_negative.mzML at line 21
index 272 is out of bounds for axis 0 with size 272
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-026_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007568_031718-5CRP2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/928.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210308_AD_24.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/psd_#2_P4G4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (psd_#2_P4G4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172722302-1889931 NNb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201342073-1877885 09D02_rep_C_Dydrogesteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201342073-1877885 09D02_rep_C_Dydrogesteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121612731-1867021 04D06_rep_B_Fenofibrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121612731-1867021 04D06_rep_B_Fenofibrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150036405-1864143 02F10_rep_B_Cefotaxime sodium salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150036405-1864143 02F10_rep_B_Cefotaxime sodium salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_17091608_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202052325-1878208 09A11_rep_D_Pinaverium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202052325-1878208 09A11_rep_D_Pinaverium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151718752-1576556 Batch4_DU145_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F12_id_MSn_positive.mzML at line 21
index 567 is out of bounds for axis 0 with size 567
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B12_id_MSn_positive.mzML at line 21
index 599 is out of bounds for axis 0 with size 599
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1C5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1C5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122536256-1867471 05F05_rep_A_Methylergometrine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122536256-1867471 05F05_rep_A_Methylergometrine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B20_id_MSn_positive.mzML at line 21
index 708 is out of bounds for axis 0 with size 708
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113053016-1874371 11C05_rep_B_Benzthiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113053016-1874371 11C05_rep_B_Benzthiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114704284-1875108 12B02_rep_B_Cortisol_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114704284-1875108 12B02_rep_B_Cortisol_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112807090-1874247 11E11_rep_A_Equilinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112807090-1874247 11E11_rep_A_Equilinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151948386-1867922 05E08_rep_C_Benfluorexa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151948386-1867922 05E08_rep_C_Benfluorexa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR131_5h3a.mzML at line 689
Specification mandates value for attribute sRxTQ74nU0MDhVND3jpUQ7MrVUPwDVZDqspXQ, line 179661, column 57 (pMIBSDR131_5h3a.mzML, line 179661)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_183.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_183.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3G02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092259/ccms_peak/Sample0001.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample097_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B3_id_MSn_negative.mzML at line 21
index 318 is out of bounds for axis 0 with size 318
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/708.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151900875-1867884 05F02_rep_C_Ketotifen_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151900875-1867884 05F02_rep_C_Ketotifen_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_D5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD6_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1274.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1274.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_blood_0h_POS.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer2_blood_0h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/750.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000081118/ccms_peak/Beers19_ms2ldaPLUS/POSmode/Beer_multibeers_14_fullscan3.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_D5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122710781-1880052 15B09_rep_D_Methenaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122710781-1880052 15B09_rep_D_Methenaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150948261-1865050 02D08_rep_D_Chlorpheniramine maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150948261-1865050 02D08_rep_D_Chlorpheniramine maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200953388-1881712 16G02_rep_A_Epirubicin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200953388-1881712 16G02_rep_A_Epirubicin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_44.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_44.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_E7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_A8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H20_id.mzML at line 21
index 596 is out of bounds for axis 0 with size 596
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_F3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/26_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080622.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/prpE_P4D8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (prpE_P4D8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111954642-1872605 10G10_rep_C_Drofenine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111954642-1872605 10G10_rep_C_Drofenine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113336398-1922401 2_H5_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113336398-1922401 2_H5_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122854563-1875833 08B04_rep_A_Troglitazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122854563-1875833 08B04_rep_A_Troglitazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pfkB_#5_P5H5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (pfkB_#5_P5H5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_102.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075324.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153823318-1577586 Batch7_NCIH441_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ5_4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3B02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C6_id_MSn_negative.mzML at line 21
index 319 is out of bounds for axis 0 with size 319
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114745653-1875140 12C11_rep_B_Nisoxetine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114745653-1875140 12C11_rep_B_Nisoxetine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_A10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202328447-1878331 10G11_rep_A_Cycloheximideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202328447-1878331 10G11_rep_A_Cycloheximideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhtA_P4H1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (rhtA_P4H1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170127_019ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/00/de254477b1da1151a2ffdf892b6a29/input_file/MMW4_20170127_019ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample161.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case121_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case121_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_A2_id_positive_20230404140655.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122243738-1867331 04E04_rep_D_Homochlorcyclizine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122243738-1867331 04E04_rep_D_Homochlorcyclizine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/37-4_idMsMs_25min_20eV_GE6_01_4260.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/200-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121630312-1879563 15F09_rep_A_Telmisartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121630312-1879563 15F09_rep_A_Telmisartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151302966-1576343 Batch6_NCIH2171_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30113 - GI-14-575.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112725952-1874214 11D03_rep_A_Cefoxitin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112725952-1874214 11D03_rep_A_Cefoxitin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dsbC_#1_P3F3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (dsbC_#1_P3F3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_G11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GB8_01_17155.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151329175-1576365 Batch7_HOP62_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093008117-1879096 14B11_rep_C_Oxaprozina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093008117-1879096 14B11_rep_C_Oxaprozina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/113_99.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD6_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d8_286_lipid__Pos_b_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 32882, column 1 (SysVirol_IFL001_Cal04RG_d8_286_lipid__Pos_b_Gimli_06Sep13_13-07-01.mzXML, line 32882)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123108878-1867733 05H09_rep_B_Oxantel_pamoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123108878-1867733 05H09_rep_B_Oxantel_pamoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_28.mzXML at line 689
Premature end of data in tag peaks line 20048, line 20052, column 15939 (20121114_28.mzXML, line 20052)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151131591-1576268 Batch5_SHP77_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B4_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000088138/raw/210916_tanaka13.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2A01P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224009603-1870390 01E07_rep_D_Naphazoline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224009603-1870390 01E07_rep_D_Naphazoline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/serA_#3_P4G3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (serA_#3_P4G3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI3_4_16_1_885.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ldcA_P3D5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (ldcA_P3D5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybjE_#1_P4C5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (ybjE_#1_P4C5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152203864-1868031 05C03_rep_D_Methapyrilene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152203864-1868031 05C03_rep_D_Methapyrilene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purE_P4E11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (purE_P4E11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample013.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample032_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D9_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151118663-1924758 3_B10_SNF3_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151118663-1924758 3_B10_SNF3_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100411523-1868965 06F04_rep_D_Calcipotrienea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100411523-1868965 06F04_rep_D_Calcipotrienea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gatC_P3G8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (gatC_P3G8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152920265-1868366 06G06_rep_A_Tosufloxacin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152920265-1868366 06G06_rep_A_Tosufloxacin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_63.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152703008-1577029 Batch2_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_04_dorsal_skin_RESV_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_04_dorsal_skin_RESV_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D11_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_25_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_25_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/945.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200652448-1881579 16D08_rep_A_Adapalenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200652448-1881579 16D08_rep_A_Adapalenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153325281-1577340 Batch4_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152604585-1576980 Batch2_SW900_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124946281-1876791 12B10_rep_C_Adrenosteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124946281-1876791 12B10_rep_C_Adrenosteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control165_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control165_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/956.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person25_blood_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 83 (Person25_blood_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydcS_P3A4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ydcS_P3A4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151125027-1576263 Batch5_SHP77_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165655466-2227450 burnin.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112701253-1922097 4_B8_GPR1_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112701253-1922097 4_B8_GPR1_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223551006-1870191 01H05_rep_C_Amitryptiline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223551006-1870191 01H05_rep_C_Amitryptiline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case191_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case191_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201120008-1881776 16H07_rep_B_Milnacipran_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201120008-1881776 16H07_rep_B_Milnacipran_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/BUD1_40EV_RA3_01_22722.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC14.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E8_id_negative.mzML at line 21
index 277 is out of bounds for axis 0 with size 277
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201926758-1882143 16G06_rep_D_Ampiroxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201926758-1882143 16G06_rep_D_Ampiroxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fieF_#1_P3G6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (fieF_#1_P3G6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/380.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078932/ccms_peak/141031_CAICE_C18_718_20uL.mzXML at line 689
Premature end of data in tag peaks line 11520, line 11520, column 15120 (141031_CAICE_C18_718_20uL.mzXML, line 11520)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112345911-1874039 10E08_rep_D_Guanadrel_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112345911-1874039 10E08_rep_D_Guanadrel_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A1Pa5mm_black_P1-B-1_01_23065.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121811739-1867115 04G10_rep_C_Amodiaquin_dihydrochloride_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121811739-1867115 04G10_rep_C_Amodiaquin_dihydrochloride_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/155-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_0124_190124222912.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G6_id.mzML at line 21
index 524 is out of bounds for axis 0 with size 524
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GA5_01_17138.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122350167-1867385 04E09_rep_D_Spiperoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122350167-1867385 04E09_rep_D_Spiperoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091814841-1878538 13H06_rep_D_Molindone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091814841-1878538 13H06_rep_D_Molindone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_E12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-1-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD5_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150953257-1865054 02C08_rep_D_Pioglitazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150953257-1865054 02C08_rep_D_Pioglitazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111547409-1921514 1_H10_GAP1_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111547409-1921514 1_H10_GAP1_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101916149-1869689 07B05_rep_D_Propylthiouracila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101916149-1869689 07B05_rep_D_Propylthiouracila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/421.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009522_IBD200_E11_B4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210120_AD_19.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124844618-1876745 12B07_rep_C_N-Acetyl-L-leucineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124844618-1876745 12B07_rep_C_N-Acetyl-L-leucineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112852013-1922196 4_H10_GPR1_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112852013-1922196 4_H10_GPR1_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224148580-1870466 01E10_rep_D_Amyleine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224148580-1870466 01E10_rep_D_Amyleine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223415942-1870118 01A01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223415942-1870118 01A01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_F6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBmegR224h2b.mzML at line 689
Unescaped '<' not allowed in attributes values, line 16967, column 7425 (pBmegR224h2b.mzML, line 16967)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223735557-2227614 PAT36.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122456564-1879948 15B06_rep_C_Amcinonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122456564-1879948 15B06_rep_C_Amcinonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_C9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/005_1020_1_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D1_id.mzML at line 21
index 552 is out of bounds for axis 0 with size 552
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S124.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S124.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fumC_P4B5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (fumC_P4B5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D3_postFOS_3_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G08P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR02pACR10/withKBr/140610pCAPpACYCFS.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113423803-1922443 2_E10_IZH2_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113423803-1922443 2_E10_IZH2_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_H8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009386_IBD200_E3_A1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_G12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_16_P4A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024899 (ctrl_16_P4A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_E11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_E11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007527_031618-1Thr1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/XYT-35d.mzXML at line 689
Premature end of data in tag peaks line 2943, line 2947, column 7673 (XYT-35d.mzXML, line 2947)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person28_blood_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 83 (Person28_blood_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121121793-1879332 14G10_rep_D_Rifabutina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121121793-1879332 14G10_rep_D_Rifabutina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007647_032118-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_105.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_105.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J3_id.mzML at line 21
index 566 is out of bounds for axis 0 with size 566
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152148477-1868019 05A09_rep_C_Zoxazolamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152148477-1868019 05A09_rep_C_Zoxazolamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00077332.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150937691-1865042 02E05_rep_D_Tioconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150937691-1865042 02E05_rep_D_Tioconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O3_id_MSn_positive.mzML at line 21
index 386 is out of bounds for axis 0 with size 386
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172705527-1889919 Nb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112830066-1922176 4_F4_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112830066-1922176 4_F4_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101022143-1869261 07C03_rep_B_Biperiden_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101022143-1869261 07C03_rep_B_Biperiden_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224031057-1870406 01F10_rep_D_Pheniramine maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224031057-1870406 01F10_rep_D_Pheniramine maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case87_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case87_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145725153-1863991 02F09_rep_A_Terfenadinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145725153-1863991 02F09_rep_A_Terfenadinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yjjX_#1_P5B3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (yjjX_#1_P5B3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_119b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112738209-1874224 11G07_rep_A_Azacytidine-5a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112738209-1874224 11G07_rep_A_Azacytidine-5a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/64-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G15_id_negative.mzML at line 21
index 278 is out of bounds for axis 0 with size 278
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_Plasma1_NEG.mzXML at line 689
attributes construct error, line 38, column 75 (Person4_Plasma1_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C9_id_MSn_positive.mzML at line 21
index 662 is out of bounds for axis 0 with size 662
Error processing file: /data/datasets/server/MassIVE/MSV000079466/peak/Adenocalymma imperatoris/AIL-NEG.mgf at line 1048
'str' object cannot be interpreted as an integer
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125816512-1863146 04C10_rep_A_Clomipramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125816512-1863146 04C10_rep_A_Clomipramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample053.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case1_neg.mzXML at line 689
attributes construct error, line 37, column 67 (Case1_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample130.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_A9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0030_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113159359-1922317 1_E1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113159359-1922317 1_E1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_88.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152856600-1868347 06H11_rep_A_Closantelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152856600-1868347 06H11_rep_A_Closantelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case94_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case94_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/manZ_#1_P4H6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (manZ_#1_P4H6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case55_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case55_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B10_id_negative.mzML at line 21
index 229 is out of bounds for axis 0 with size 229
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-faux.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009585_IBD200_E15_A1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223446008-1870141 01H03_rep_B_Imipramine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223446008-1870141 01H03_rep_B_Imipramine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091646064-1878468 13D08_rep_D_Fluticasone_propionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091646064-1878468 13D08_rep_D_Fluticasone_propionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152604723-1868214 05E10_rep_D_Meloxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152604723-1868214 05E10_rep_D_Meloxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150327085-1864755 02C03_rep_B_Amoxapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150327085-1864755 02C03_rep_B_Amoxapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E8_id_MSn_positive.mzML at line 21
index 554 is out of bounds for axis 0 with size 554
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD1_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2A07Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152653574-1868252 06C01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152653574-1868252 06C01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153948481-1577658 Batch7_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111524697-1871528 10G09_rep_B_Hexylcaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111524697-1871528 10G09_rep_B_Hexylcaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisG_#1_P5A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (hisG_#1_P5A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8B05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_15102101_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD4_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152047349-1576726 Batch1_UMUC3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/784.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111605325-1921529 1_C9_GAP1_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111605325-1921529 1_C9_GAP1_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control134_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control134_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1015.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR231_5h1a.mzML at line 88
Invalid base64-encoded string: number of data characters (1517) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_19032901_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_P_E3E4_AD_IMS_13Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200855257-1881669 16H01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200855257-1881669 16H01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153357470-1577366 Batch5_EBC1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153102633-1577225 Batch3_SKMEL5_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153200009-1577271 Batch3_KU1919_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114151816-1874861 11C05_rep_D_Benzthiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114151816-1874861 11C05_rep_D_Benzthiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S122.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S122.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_16_RIN_48.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_16_RIN_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084016/ccms_peak/PositiveRaw/P27_mouse_24_Nov_ben_B11.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000084016/ccms_peak/PositiveRaw/P27_mouse_24_Nov_ben_B11.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glgA_P3F9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (glgA_P3F9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GE12_01_12143.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ugpA_P3F5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (ugpA_P3F5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_120125_nanoDESI_Mosquito_18hrs_Putida.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150640365-1864904 02A11_rep_C_Pindolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150640365-1864904 02A11_rep_C_Pindolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153715417-1868738 06E11_rep_C_Dicloxacillin_sodium_salt_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153715417-1868738 06E11_rep_C_Dicloxacillin_sodium_salt_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/252.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_341.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person27_blood_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 83 (Person27_blood_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170207_045EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/9c/330985b157a6b9fe00c756cfcf5f79/input_file/MMW6_20170207_045EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M23_id_negative.mzML at line 21
index 278 is out of bounds for axis 0 with size 278
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ7_6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121447756-1879486 15B03_rep_A_Melengestrol_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121447756-1879486 15B03_rep_A_Melengestrol_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N2.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/solA_#3_P3H12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (solA_#3_P3H12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114019989-1874787 11A07_rep_D_Trimipramine_maleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114019989-1874787 11A07_rep_D_Trimipramine_maleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C9_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_107.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine59cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine59cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Amycolatopsis_meth_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_19032112_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114713293-1875115 12G02_rep_B_Pentetic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114713293-1875115 12G02_rep_B_Pentetic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample187_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152912506-1868360 06H03_rep_A_Itopridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152912506-1868360 06H03_rep_A_Itopridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folX_#1_P3H4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (folX_#1_P3H4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170207_044EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/30/ccbb8d693e3d4ffb00f4f8e34aedd8/input_file/SH7_20170207_044EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152746239-1577065 Batch1_769P_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201820089-1882090 16G09_rep_C_Palonosetron_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201820089-1882090 16G09_rep_C_Palonosetron_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190127_ES_H3K_batch15_repA_216.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GD11_01_16828.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N18_id_MSn_negative.mzML at line 21
index 300 is out of bounds for axis 0 with size 300
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153829163-1577591 Batch7_UO31_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case71_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case71_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222904376-1869883 01G08_rep_A_Miconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222904376-1869883 01G08_rep_A_Miconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxB_#1_P4A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (lpxB_#1_P4A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190314397-1889782 Na.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc036_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc036_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123125001-1867746 05B02_rep_B_Tremorine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123125001-1867746 05B02_rep_B_Tremorine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112332206-1921914 3_G8_GPR1_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112332206-1921914 3_G8_GPR1_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1844.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1844.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_73.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007568_031718-5CRP2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130411142-1877450 13D02_rep_B_Gliquidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130411142-1877450 13D02_rep_B_Gliquidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ldtB_#2_P3A8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (ldtB_#2_P3A8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087490/ccms_peak/secuamamine at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_19090114_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1K001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152720991-1868273 06B08_rep_A_Lamivudineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152720991-1868273 06B08_rep_A_Lamivudineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GE1_01_11511.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121636812-1879568 15A07_rep_A_Clavulanate_potassium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121636812-1879568 15A07_rep_A_Clavulanate_potassium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control53_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control53_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145947744-1864106 02A08_rep_B_Diazoxideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145947744-1864106 02A08_rep_B_Diazoxideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_E7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_QC_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153615215-1577479 Batch5_NCIH1792_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000091760/raw/TC15_pellet.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD5_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170207_014EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a6/4641517bce633b089dfc54001ca3c5/input_file/SH9_20170207_014EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101441089-1869468 07H01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101441089-1869468 07H01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw3_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H3_id_MSn_positive.mzML at line 21
index 617 is out of bounds for axis 0 with size 617
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/775.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122841473-1867620 05D04_rep_A_Moclobemidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122841473-1867620 05D04_rep_A_Moclobemidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150013740-1864126 02B07_rep_B_Guanabenz acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150013740-1864126 02B07_rep_B_Guanabenz acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GD4_01_11964.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124547000-1862541 03E04_rep_B_Flufenamic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124547000-1862541 03E04_rep_B_Flufenamic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GB4_01_11465.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000088261/raw/210916_tanaka13.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122820280-1875806 08C01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122820280-1875806 08C01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152410689-1576887 Batch2_NCIH2172_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/araB_P4B1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (araB_P4B1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125215281-1862851 03H08_rep_C_Ofloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125215281-1862851 03H08_rep_C_Ofloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100239237-1868892 06F02_rep_D_Alizapride_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100239237-1868892 06F02_rep_D_Alizapride_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_G4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_33_2022_1003_Michael_leming_liver_neg-0.0059.mzML at line 689
Premature end of data in tag binary line 20040, line 20040, column 690447 (3_33_2022_1003_Michael_leming_liver_neg-0.0059.mzML, line 20040)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ7_3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101524478-1869501 07D04_rep_C_Norcyclobenzaprinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101524478-1869501 07D04_rep_C_Norcyclobenzaprinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_13_2022_1003_Michael_leming_liver_neg-0.0033.mzML at line 689
Premature end of data in tag binary line 25094, line 25094, column 2700502 (1_13_2022_1003_Michael_leming_liver_neg-0.0033.mzML, line 25094)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/Blank10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152917003-1577142 Batch3_A498_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_61.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201709918-1878037 09D10_rep_C_Ibandronate_sodium_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201709918-1878037 09D10_rep_C_Ibandronate_sodium_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ubiA_P4F12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ubiA_P4F12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/accC_P4B3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (accC_P4B3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223319335-1870075 01D11_rep_B_Niclosamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223319335-1870075 01D11_rep_B_Niclosamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD3_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_11P_A5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/chbC_P3A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (chbC_P3A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET83.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET83.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125559567-1863033 03H10_rep_D_Orphenadrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125559567-1863033 03H10_rep_D_Orphenadrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case30_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case30_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_H_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_H_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/gluL_argA_P5D6_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 634, column 10000425 (gluL_argA_P5D6_Aquity_pos.mzXML, line 634)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091630209-1878456 13G01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091630209-1878456 13G01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151720635-1925062 4_F5_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151720635-1925062 4_F5_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_G5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150109491-1864169 02F08_rep_B_Clindamycin hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150109491-1864169 02F08_rep_B_Clindamycin hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153000722-1577179 Batch3_SCABER_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_E6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092029228-1878644 14E10_rep_A_(S)-(-)-Cycloserinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092029228-1878644 14E10_rep_A_(S)-(-)-Cycloserinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201823590-1882093 16G05_rep_C_Lomerizine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201823590-1882093 16G05_rep_C_Lomerizine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3H02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8D02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123001971-1875886 08A01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123001971-1875886 08A01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI1b_5_27_1_896.mzML at line 689
Premature end of data in tag binary line 5447628, line 5447628, column 571310 (50130_microPOTS_Rat_Brain_ROI1b_5_27_1_896.mzML, line 5447628)
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-CCM-PA-water-02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113339332-1874503 11A02_rep_B_Carbinoxamine_maleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113339332-1874503 11A02_rep_B_Carbinoxamine_maleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152119394-1867996 05B11_rep_C_Domperidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152119394-1867996 05B11_rep_C_Domperidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223822835-2227655 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153658422-1577515 Batch5_HCT15_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1D01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100224044-1868880 06D09_rep_D_Doxorubicin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100224044-1868880 06D09_rep_D_Doxorubicin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084170/ccms_peak/BAX30_x6_BC8_01_14733.mzML at line 689
Premature end of data in tag binary line 18302, line 18302, column 4414 (BAX30_x6_BC8_01_14733.mzML, line 18302)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_G3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E2_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123619420-1876189 08B07_rep_C_Acetopromazine_maleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123619420-1876189 08B07_rep_C_Acetopromazine_maleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GF8_01_16853.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153655867-1868722 06B07_rep_C_Bacampicillin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153655867-1868722 06B07_rep_C_Bacampicillin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123111430-1875941 08B11_rep_A_Argatrobanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123111430-1875941 08B11_rep_A_Argatrobanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J4_id_MSn_negative.mzML at line 21
index 344 is out of bounds for axis 0 with size 344
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100328993-1868931 06F03_rep_D_Stanozolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100328993-1868931 06F03_rep_D_Stanozolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125951632-1863226 04B07_rep_A_Isotretinoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125951632-1863226 04B07_rep_A_Isotretinoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O10_id_MSn_positive.mzML at line 21
index 591 is out of bounds for axis 0 with size 591
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_255.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122506774-1867447 04B02_rep_D_Chlorothiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122506774-1867447 04B02_rep_D_Chlorothiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190345734-1889806 NNa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007537_031618-1Thr6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_A3_id_positive.mzML at line 21
index 411 is out of bounds for axis 0 with size 411
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/CORN_AAD4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009567_IBD200_E13_A11.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N12_id_MSn_negative.mzML at line 21
index 354 is out of bounds for axis 0 with size 354
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151523202-1576459 Batch6_NCIH1838_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Baicalein_notris_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_blood_1h_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Volunteer1_blood_1h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C14_id_negative.mzML at line 21
index 267 is out of bounds for axis 0 with size 267
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092001867-1878623 13D09_rep_D_Zuclopenthixol_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092001867-1878623 13D09_rep_D_Zuclopenthixol_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/254.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151204157-1924797 3_F2_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151204157-1924797 3_F2_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D3_postFOS_1_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1424.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1424.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200549181-1881532 16F10_rep_A_Besifloxacin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200549181-1881532 16F10_rep_A_Besifloxacin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123218777-1867789 05H03_rep_B_Ketanserin_tartrate_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123218777-1867789 05H03_rep_B_Ketanserin_tartrate_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C22_id_MSn_negative.mzML at line 21
index 318 is out of bounds for axis 0 with size 318
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30065 - GI-14-343.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/003_Ammonia_Day14_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201851958-1878114 09H10_rep_D_Cephalothin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201851958-1878114 09H10_rep_D_Cephalothin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_elow (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224402663-1870572 01F11_rep_D_Tolazoline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224402663-1870572 01F11_rep_D_Tolazoline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151642198-1925030 4_A1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151642198-1925030 4_A1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180418_ES_H3K_batch6_repB_101.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/norW_#1_P4F3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (norW_#1_P4F3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092542788-1878889 14A02_rep_B_Etomidateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092542788-1878889 14A02_rep_B_Etomidateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201500923-1877943 09D05_rep_C_Nalidixic_acid_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201500923-1877943 09D05_rep_C_Nalidixic_acid_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151719478-1925061 4_F5_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151719478-1925061 4_F5_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_MICU_331_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080949/ccms_peak/peaks/3injections_inj2_POS.mzXML at line 689
attributes construct error, line 41, column 76 (3injections_inj2_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151953304-1867926 05H09_rep_C_Oxantel_pamoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151953304-1867926 05H09_rep_C_Oxantel_pamoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpTen1_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223722880-2227603 Healthy7.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_200.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114120869-1922807 4_E10_STE2_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114120869-1922807 4_E10_STE2_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150418112026.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/37-4_idMsMs_25min_30eV_GE6_01_4261.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acnB_P3D11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (acnB_P3D11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/460-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151917229-1576654 Batch5_COLO205_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113656324-1922574 2_C11_IZH2_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113656324-1922574 2_C11_IZH2_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007609_032118-Unst1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151630058-1576515 Batch7_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_C5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00072710.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075700.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C6_id_MSn_positive.mzML at line 21
index 577 is out of bounds for axis 0 with size 577
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201858849-1882121 16G01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201858849-1882121 16G01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112853137-1922197 4_H10_GPR1_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112853137-1922197 4_H10_GPR1_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person20_RBC_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 81 (Person20_RBC_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/437.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121100742-1879316 14D09_rep_D_Benzylpenicillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121100742-1879316 14D09_rep_D_Benzylpenicillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100804613-1869152 07B09_rep_A_Artemisininb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100804613-1869152 07B09_rep_A_Artemisininb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/404.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124740407-1862631 03E06_rep_B_Tolfenamic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124740407-1862631 03E06_rep_B_Tolfenamic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B3_id.mzML at line 21
index 738 is out of bounds for axis 0 with size 738
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/temp/SYL-TSQ-13-06-21_L78.mzXML at line 689
Couldn't find end of Start Tag offs line 598726, line 598726, column 10 (SYL-TSQ-13-06-21_L78.mzXML, line 598726)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_G9_id_positive.mzML at line 21
index 369 is out of bounds for axis 0 with size 369
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM5L003A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151825713-1867856 05A03_rep_C_Alfuzosin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151825713-1867856 05A03_rep_C_Alfuzosin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121220535-1879376 14H04_rep_D_Viomycin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121220535-1879376 14H04_rep_D_Viomycin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_19032111_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N14_id_negative.mzML at line 21
index 283 is out of bounds for axis 0 with size 283
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GE5_01_16836.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 Column1_test_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113237345-1874453 11H02_rep_B_Iopamidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113237345-1874453 11H02_rep_B_Iopamidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A21_id_MSn_negative_20240406184950.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153913003-1577628 Batch6_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_C8_id_negative.mzML at line 21
index 262 is out of bounds for axis 0 with size 262
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_150.mzXML at line 689
Premature end of data in tag peaks line 23227, line 23231, column 3652 (20121114_150.mzXML, line 23231)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD4_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113527232-1874552 11G10_rep_C_Phthalylsulfathiazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113527232-1874552 11G10_rep_C_Phthalylsulfathiazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145927854-1864090 02A02_rep_A_Metronidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145927854-1864090 02A02_rep_A_Metronidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S05_dilute_190201063035.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114242123-1922880 4_G10_STE2_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114242123-1922880 4_G10_STE2_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097382/ccms_peak/240530_Batch_15_20240530_004.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000097382/ccms_peak/240530_Batch_15_20240530_004.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/38.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223753938-2227630 PAT47.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1214.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1214.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111827560-1921652 2_A4_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111827560-1921652 2_A4_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD1_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088261/raw/210916_tanaka04.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151133259-1576269 Batch5_SHP77_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170207_053EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b6/7c426b40a90f2fb16d997a169ba2dc/input_file/MMW3_20170207_053EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHH03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112607538-1874152 11F05_rep_A_Roxithromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112607538-1874152 11F05_rep_A_Roxithromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122725396-1867559 05E11_rep_A_Benzbromaroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122725396-1867559 05E11_rep_A_Benzbromaroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101708406-1869585 07C06_rep_C_Metaproterenol_sulfate,_orciprenaline_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101708406-1869585 07C06_rep_C_Metaproterenol_sulfate,_orciprenaline_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101018382-1869258 07D07_rep_B_Lovastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101018382-1869258 07D07_rep_B_Lovastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122033865-1867227 04A01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122033865-1867227 04A01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D18_id_MSn_positive.mzML at line 21
index 763 is out of bounds for axis 0 with size 763
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/349.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123941745-1876350 08C05_rep_D_Yohimbine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123941745-1876350 08C05_rep_D_Yohimbine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122906102-1875842 08F08_rep_A_Quipazine_dimaleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122906102-1875842 08F08_rep_A_Quipazine_dimaleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD3_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudC_P3A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (nudC_P3A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw5_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_220.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M17_id_MSn_positive.mzML at line 21
index 685 is out of bounds for axis 0 with size 685
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112400669-1921939 3_G5_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112400669-1921939 3_G5_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-qc_ehigh.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/747.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_redo_MSMS_2022_neg-0003.mzML at line 689
Premature end of data in tag binary line 19139, line 19139, column 1033795 (pooled_redo_MSMS_2022_neg-0003.mzML, line 19139)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122813799-1875801 08F04_rep_A_Diosminb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122813799-1875801 08F04_rep_A_Diosminb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HaCaT_1_RESV_0uM_NEG.mzXML at line 689
attributes construct error, line 38, column 81 (HaCaT_1_RESV_0uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD4_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121738443-1879615 15C10_rep_B_Vardenafilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121738443-1879615 15C10_rep_B_Vardenafilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130118779-1877316 13D04_rep_B_Ribavirinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130118779-1877316 13D04_rep_B_Ribavirinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091727826-1878501 13G07_rep_D_Arbutinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091727826-1878501 13G07_rep_D_Arbutinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009655_IBD200_E19_B6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151730712-1576566 Batch4_HPAC_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case212_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case212_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/228.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_E5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123247328-1876018 08F09_rep_B_Acipimoxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123247328-1876018 08F09_rep_B_Acipimoxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I5_id_MSn_positive.mzML at line 21
index 424 is out of bounds for axis 0 with size 424
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122537766-1879980 15G06_rep_C_Racepinephrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122537766-1879980 15G06_rep_C_Racepinephrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES114_120503201114.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113900534-1874723 11H03_rep_D_Iopromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113900534-1874723 11H03_rep_D_Iopromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_G9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132913430-1733894 1pool Skin 2 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152319221-1576846 Batch2_NCIH226_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123949216-1876356 08C06_rep_D_Voriconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123949216-1876356 08C06_rep_D_Voriconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/232.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNY243_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ09031447.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_C4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A19_id_MSn_negative.mzML at line 21
index 272 is out of bounds for axis 0 with size 272
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153930642-1577643 Batch7_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_96.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150459417-1864826 02F09_rep_C_Terfenadinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150459417-1864826 02F09_rep_C_Terfenadinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cpdA_#1_P4C5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (cpdA_#1_P4C5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/plaP_P3A4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (plaP_P3A4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007611_032118-Unst1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122732788-1875769 08D04_rep_A_Zaleplonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122732788-1875769 08D04_rep_A_Zaleplonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201910324-1882130 16H02_rep_D_Cisatracurium_besylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201910324-1882130 16H02_rep_D_Cisatracurium_besylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_106.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/825.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O22_id_MSn_negative.mzML at line 21
index 342 is out of bounds for axis 0 with size 342
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0001_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yhiJ_P5E6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (yhiJ_P5E6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G1_id_negative.mzML at line 21
index 245 is out of bounds for axis 0 with size 245
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G12P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121034182-1879296 14H03_rep_D_Procarbazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121034182-1879296 14H03_rep_D_Procarbazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8H08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113203307-1874426 11H11_rep_B_Carbachola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113203307-1874426 11H11_rep_B_Carbachola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170207_022EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/33/f63b2a2b029ede21146cae1a7c12b1/input_file/MMW3_20170207_022EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122640698-1867523 05E04_rep_A_Colchicineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122640698-1867523 05E04_rep_A_Colchicineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_129.mzXML at line 689
Premature end of data in tag msRun line 5, line 23046, column 1 (20121114_129.mzXML, line 23046)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152125609-1868001 05A02_rep_C_Streptomycin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152125609-1868001 05A02_rep_C_Streptomycin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dgoD_P4F3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (dgoD_P4F3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094171/peak/80_MB_CPos1.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cobT_P3E1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (cobT_P3E1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092204740-1878718 14G07_rep_A_Meropenema.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092204740-1878718 14G07_rep_A_Meropenema.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223722839-1870261 01D11_rep_C_Niclosamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223722839-1870261 01D11_rep_C_Niclosamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125703314-1877122 13G07_rep_A_Arbutinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125703314-1877122 13G07_rep_A_Arbutinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_130a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GH12_01_17123.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153223267-1868505 06C05_rep_B_Cephalosporanic_acid,_7-aminob.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153223267-1868505 06C05_rep_B_Cephalosporanic_acid,_7-aminob.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152926539-1577150 Batch3_HT1376_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I12_id_MSn_positive.mzML at line 21
index 642 is out of bounds for axis 0 with size 642
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121036870-1879298 14D07_rep_D_Ciprofibratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121036870-1879298 14D07_rep_D_Ciprofibratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/313.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B9_id_negative.mzML at line 21
index 257 is out of bounds for axis 0 with size 257
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112949865-1874327 11C02_rep_B_Azlocillin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112949865-1874327 11C02_rep_B_Azlocillin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083166.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125420212-1876997 12C03_rep_D_Abacavir_Sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125420212-1876997 12C03_rep_D_Abacavir_Sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case154_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case154_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_ISB_male_2022_1017_Michael_neg-0.0063.mzML at line 689
Premature end of data in tag binary line 27554, line 27554, column 1171308 (4_ISB_male_2022_1017_Michael_neg-0.0063.mzML, line 27554)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR17_5h3a.mzML at line 689
Opening and ending tag mismatch: binary line 82054 and spectrum, line 82082, column 20 (pMIBSDR17_5h3a.mzML, line 82082)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GC6_01_17043.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N8.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case254_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case254_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_370.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122721787-1867556 05H11_rep_A_Hesperidin_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122721787-1867556 05H11_rep_A_Hesperidin_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_82.mzXML at line 689
Premature end of data in tag peaks line 26899, line 26903, column 3648 (20121114_82.mzXML, line 26903)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/3ig3p_trpA_P3H11_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (3ig3p_trpA_P3H11_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_0126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET136.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET136.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153132428-1577249 Batch5_NCIH727_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_G4_id_negative.mzML at line 21
index 259 is out of bounds for axis 0 with size 259
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201515191-1877952 09G03_rep_C_Succinylsulfathiazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201515191-1877952 09G03_rep_C_Succinylsulfathiazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153332680-1577346 Batch4_CAKI1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl 1RS_P3A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024957 (ctrl 1RS_P3A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_H10_01_12190.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_080a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sad_#1_P5D8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (sad_#1_P5D8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112409395-1874058 10D09_rep_D_Ribostamycin_sulfate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112409395-1874058 10D09_rep_D_Ribostamycin_sulfate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-021.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-021.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170209_033ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/1a/fe4eb3857f21e317b3a56de343f771/input_file/MMW4_20170209_033ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_SERUM_V6_SSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dppD_P4E4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (dppD_P4E4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GE2_01_16959.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111805357-1872038 10F07_rep_C_Guaifenesina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111805357-1872038 10F07_rep_C_Guaifenesina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM2Y009.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_243.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0009_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0009_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153413314-1577379 Batch4_NCIH1651_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101547860-1869519 07H03_rep_C_Selegiline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101547860-1869519 07H03_rep_C_Selegiline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124922682-1862713 03G11_rep_B_Phentolamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124922682-1862713 03G11_rep_B_Phentolamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202022027-1878184 09F08_rep_D_3-alpha-Hydroxy-5-beta-androstan-17-onea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202022027-1878184 09F08_rep_D_3-alpha-Hydroxy-5-beta-androstan-17-onea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079679/ccms_peak/SputumvsFood/Gly_blank_FF_BE2_01_18643.mzXML at line 689
Extra content at the end of the document, line 31021, column 1 (Gly_blank_FF_BE2_01_18643.mzXML, line 31021)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6B02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152403027-1868121 05E01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152403027-1868121 05E01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_G6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_G4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153134968-1868467 06A04_rep_B_Thyroxine_(L)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153134968-1868467 06A04_rep_B_Thyroxine_(L)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hD2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hD2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_mock_d1_289_lipid__Neg_17Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 31069, column 1 (SysVirol_IFL001_mock_d1_289_lipid__Neg_17Sep13_13-07-01.mzXML, line 31069)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F4_id_negative.mzML at line 21
index 272 is out of bounds for axis 0 with size 272
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153646475-1577505 Batch4_SW1573_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_141.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121905621-1879681 15A08_rep_B_Valproic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121905621-1879681 15A08_rep_B_Valproic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092005804-1878626 13G04_rep_D_Isometheptene_mucatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092005804-1878626 13G04_rep_D_Isometheptene_mucatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121908137-1867159 04C11_rep_C_Fendiline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121908137-1867159 04C11_rep_C_Fendiline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201407894-1877904 09D01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201407894-1877904 09D01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152238647-1576814 Batch2_NCIH522_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fucI_P3H9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (fucI_P3H9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_083b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_178.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I6_id_negative.mzML at line 21
index 262 is out of bounds for axis 0 with size 262
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike1_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130732859-1877609 13B01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130732859-1877609 13B01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152005686-1576693 Batch1A_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007667_032118-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O16_id_MSn_positive.mzML at line 21
index 381 is out of bounds for axis 0 with size 381
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_011EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/3a/b0c6aad84ea160f22b58a99b7351d2/input_file/QC_20170207_011EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD6_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1037.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_110.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S32.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S32.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153651196-1577509 Batch4_SW1573_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_C8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/214-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Blank_pesticide_Swabs_170406001845.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-133_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170127_040ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/98/3fca2589a78dc34d63ee74dba31559/input_file/SH10_20170127_040ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125602672-1877075 12H07_rep_D_Megestrol_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125602672-1877075 12H07_rep_D_Megestrol_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180501_ES_H3K_batch4_repD_59.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ampG_#3_P3F2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ampG_#3_P3F2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/GNPS-Nudibranch/Data-MS2/Converted/200609A_sample_50.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153141118-1577256 Batch4_NCIH1651_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_3_P_rep_3_B-E6_1_5865.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417155345.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/208-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrdG_P3B6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (nrdG_P3B6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_G7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_89.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130849888-1877671 13D05_rep_C_Cyclopenthiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130849888-1877671 13D05_rep_C_Cyclopenthiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112512005-1874108 10D04_rep_D_Demeclocycline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112512005-1874108 10D04_rep_D_Demeclocycline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111520790-1871525 10G06_rep_B_Dicumarola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111520790-1871525 10G06_rep_B_Dicumarola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_E9_id_negative.mzML at line 21
index 230 is out of bounds for axis 0 with size 230
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_C4_id_positive.mzML at line 21
index 331 is out of bounds for axis 0 with size 331
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E1_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2B07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111736462-1871630 10D10_rep_B_Methacholine_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111736462-1871630 10D10_rep_B_Methacholine_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_140.mzXML at line 689
Premature end of data in tag peaks line 22547, line 22551, column 15939 (20121114_140.mzXML, line 22551)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case224_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case224_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201611189-1877993 09C06_rep_C_Tetraethylenepentamine_pentahydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201611189-1877993 09C06_rep_C_Tetraethylenepentamine_pentahydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S005_dilute_190131171314.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine66.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine66.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mutT_P3D3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (mutT_P3D3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201314532-1881862 16D09_rep_B_Diatrizoic_acid_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201314532-1881862 16D09_rep_B_Diatrizoic_acid_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N15_id_MSn_positive.mzML at line 21
index 429 is out of bounds for axis 0 with size 429
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112445124-1921978 3_C2_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112445124-1921978 3_C2_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/848.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/452.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S2cells_clear_4_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2B01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_114.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_114.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_15102011_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101622192-1869547 07D06_rep_C_Trimethadionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101622192-1869547 07D06_rep_C_Trimethadionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152828194-1868325 06A05_rep_A_Idebenoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152828194-1868325 06A05_rep_A_Idebenoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000097739/peak/C7_3 MSMS neg.mzML at line 640
'selectedIonList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150750939-1864959 02C03_rep_D_Amoxapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150750939-1864959 02C03_rep_D_Amoxapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_A9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C15_id_MSn_negative.mzML at line 21
index 306 is out of bounds for axis 0 with size 306
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111828202-1872056 10H03_rep_C_Propidium_iodidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111828202-1872056 10H03_rep_C_Propidium_iodidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6D09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100254334-1868904 06D02_rep_D_Pefloxacineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100254334-1868904 06D02_rep_D_Pefloxacineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample2n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124703942-1862602 03B04_rep_B_Tranylcypromine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124703942-1862602 03B04_rep_B_Tranylcypromine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R37_5h2a.mzML at line 689
Opening and ending tag mismatch: scanList line 73684 and binaryDataArray, line 73701, column 31 (pBlichMO17R37_5h2a.mzML, line 73701)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112542292-1922028 4_G4_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112542292-1922028 4_G4_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091957980-1878620 13D04_rep_D_Ribavirina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091957980-1878620 13D04_rep_D_Ribavirina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisA_#5_P6F5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (hisA_#5_P6F5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/373.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153404799-1577372 Batch3_KU1919_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124848646-1876748 12G08_rep_C_Prazosin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124848646-1876748 12G08_rep_C_Prazosin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114551674-1875052 12D01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114551674-1875052 12D01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/448.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201522103-1881956 16H02_rep_C_Cisatracurium_besylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201522103-1881956 16H02_rep_C_Cisatracurium_besylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114550369-1875051 12B02_rep_A_Cortisol_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114550369-1875051 12B02_rep_A_Cortisol_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112630300-1922070 4_A8_GPR1_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112630300-1922070 4_A8_GPR1_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095157/peak/ISB_statin_mzml/P1_ISBGUT_Blank_start.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000095157/peak/ISB_statin_mzml/P1_ISBGUT_Blank_start.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153238621-1577302 Batch4_DMS114_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113516983-1874544 11A04_rep_C_Pyrithyldionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113516983-1874544 11A04_rep_C_Pyrithyldionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152618895-1868225 06H05_rep_A_Fentiazacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152618895-1868225 06H05_rep_A_Fentiazacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150943512-1924676 2_B4_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150943512-1924676 2_B4_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_101.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170207_021EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/cd/677e6ec40070dd5bc07745d4545621/input_file/MMW6_20170207_021EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151030849-1865083 02A04_rep_D_Edrophonium chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151030849-1865083 02A04_rep_D_Edrophonium chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123032032-1867705 05G01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123032032-1867705 05G01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR324h2b.mzML at line 689
Unescaped '<' not allowed in attributes values, line 127909, column 1277 (pBpumR324h2b.mzML, line 127909)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111955956-1921727 2_H3_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111955956-1921727 2_H3_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_0124_190125023830.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC15_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_H3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152610631-1576985 Batch3_KP4_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_168.mzXML at line 689
Premature end of data in tag peaks line 18025, line 18029, column 3652 (20121114_168.mzXML, line 18029)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GH8_01_17118.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200911394-1881681 16H08_rep_A_Triclabendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200911394-1881681 16H08_rep_A_Triclabendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/1hdecg3p_plsC_P3A2_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024902 (1hdecg3p_plsC_P3A2_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121849096-1867144 04A07_rep_C_Pinacidila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121849096-1867144 04A07_rep_C_Pinacidila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD4_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092343831-1878796 14D09_rep_A_Benzylpenicillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092343831-1878796 14D09_rep_A_Benzylpenicillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD6_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ12181432.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122300112-1879859 15E08_rep_C_Desloratadineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122300112-1879859 15E08_rep_C_Desloratadineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100231760-1868886 06G02_rep_D_Tropisetron_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100231760-1868886 06G02_rep_D_Tropisetron_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J19_id_MSn_negative.mzML at line 21
index 337 is out of bounds for axis 0 with size 337
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092301556-1878763 14F04_rep_A_Misoprostolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092301556-1878763 14F04_rep_A_Misoprostolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_A9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223327298-1870081 01F03_rep_B_Carbamazepinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223327298-1870081 01F03_rep_B_Carbamazepinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125150383-1862831 03E10_rep_C_Metoclopramide_monohydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125150383-1862831 03E10_rep_C_Metoclopramide_monohydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223751611-2227628 PAT47.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_14_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_14_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD128_P2-A-3_03_2653.mzML at line 255
Error -3 while decompressing data: invalid code lengths set
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-cc6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114255582-1922892 4_D7_STE2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114255582-1922892 4_D7_STE2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_135.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C2_id_negative.mzML at line 21
index 261 is out of bounds for axis 0 with size 261
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124157805-1862243 03B06_rep_A_Aceclofenaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124157805-1862243 03B06_rep_A_Aceclofenaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/16032021_Batch06_QC_ 8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_C8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ldcC_P4E12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ldcC_P4E12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_138b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113800234-1874674 11H06_rep_C_Reserpinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113800234-1874674 11H06_rep_C_Reserpinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR23h1b.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100747187-1869138 07B03_rep_A_Nitrofuralb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100747187-1869138 07B03_rep_A_Nitrofuralb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087805/ccms_peak/Media_C2_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_C5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/823.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100241860-1868894 06F10_rep_D_Butalbitalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100241860-1868894 06F10_rep_D_Butalbitalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123242299-1867808 05C06_rep_B_Clenbuterol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123242299-1867808 05C06_rep_B_Clenbuterol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125448015-1877018 12F08_rep_D_Dehydroisoandosterone_3-acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125448015-1877018 12F08_rep_D_Dehydroisoandosterone_3-acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145922968-1864086 02E02_rep_A_Bromocryptine mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145922968-1864086 02E02_rep_A_Bromocryptine mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123323654-1876047 08B03_rep_B_Mometasone_furoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123323654-1876047 08B03_rep_B_Mometasone_furoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121534467-1866991 04E07_rep_B_Perhexiline_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121534467-1866991 04E07_rep_B_Perhexiline_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121552007-1879533 15C02_rep_A_Famciclovirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121552007-1879533 15C02_rep_A_Famciclovirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Negative_FGF1_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222901614-1869881 01D11_rep_A_Niclosamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222901614-1869881 01D11_rep_A_Niclosamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_70.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153228474-1868509 06G07_rep_B_Efavirenzb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153228474-1868509 06G07_rep_B_Efavirenzb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30080 - GI-14-974.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_20_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_20_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007697_032218-5CRP3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190126213509.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (6).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB6H01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES113_2.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124033600-1876391 08F08_rep_D_Quipazine_dimaleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124033600-1876391 08F08_rep_D_Quipazine_dimaleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hA1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hA1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153624364-1868696 06F11_rep_C_Dinoprost_trometamola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153624364-1868696 06F11_rep_C_Dinoprost_trometamola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100514772-1869015 06G03_rep_D_Cefiximea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100514772-1869015 06G03_rep_D_Cefiximea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121444997-1866953 04A02_rep_B_Mexiletine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121444997-1866953 04A02_rep_B_Mexiletine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/847.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpTen2_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152753469-1577071 Batch2_PC3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GF6_01_12152.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N7_id_MSn_negative.mzML at line 21
index 323 is out of bounds for axis 0 with size 323
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C12_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007524_031618-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/3-aminobenzoic_acid.mzXML at line 689
Premature end of data in tag peaks line 7327, line 7331, column 77293 (3-aminobenzoic_acid.mzXML, line 7331)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153621297-1577484 Batch4_NCIH810_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR131_5h2aT2.mzML at line 689
attributes construct error, line 190549, column 90 (pBlateR131_5h2aT2.mzML, line 190549)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/6.6_4OI _VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_C3_id_positive.mzML at line 21
index 287 is out of bounds for axis 0 with size 287
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mobA_P3E10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (mobA_P3E10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/210-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165816628-2227524 PAT46.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arnB_#1_P4F5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (arnB_#1_P4F5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xylE_P3C8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (xylE_P3C8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224129595-1870451 01E01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224129595-1870451 01E01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_E12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/417.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170207_020EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/85/afb72f7a2ce4d04014fe1192bce044/input_file/SH7_20170207_020EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170209_068ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/bc/81125042a79c0e739d2900100ca61c/input_file/MMW5_20170209_068ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_CABIN_sample12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_B2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151419614-1576407 Batch7_HARA_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152839491-1577110 Batch3_A549_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_155.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_144.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_A6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150707524-1864925 02H03_rep_C_Chloroxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150707524-1864925 02H03_rep_C_Chloroxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hycF_#3_P4H3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (hycF_#3_P4H3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112746878-1874231 11A01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112746878-1874231 11A01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150826899-1864987 02G08_rep_D_Nicergolineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150826899-1864987 02G08_rep_D_Nicergolineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_75.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123702737-1876223 08F06_rep_C_(-)-Emtricitabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123702737-1876223 08F06_rep_C_(-)-Emtricitabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_1_P_rep_2_B-F2_1_5870.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_E12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_4_P_rep_3_B-B4_1_5646.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092750/peak/BileAcids_LiverDiseasePatients/044__20220617__CLIN053__LD_318_03__dil.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000092750/peak/BileAcids_LiverDiseasePatients/044__20220617__CLIN053__LD_318_03__dil.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/419.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202043617-1878201 09G09_rep_D_Benzethonium_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202043617-1878201 09G09_rep_D_Benzethonium_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/719.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152645280-1577014 Batch1_NCIH1395_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150024366-1864134 02C01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150024366-1864134 02C01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123556746-1876171 08H07_rep_C_Penciclovirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123556746-1876171 08H07_rep_C_Penciclovirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121819589-1867121 04E11_rep_C_Sulfinpyrazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121819589-1867121 04E11_rep_C_Sulfinpyrazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094546/raw/QTOF Brucker/HE11_Pestalotiopsis.mzXML at line 689
Extra content at the end of the document, line 29145, column 1 (HE11_Pestalotiopsis.mzXML, line 29145)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/psuG_P3E9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (psuG_P3E9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223904524-2227692 PAT37.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151512986-1924959 4_H11_SNF3_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151512986-1924959 4_H11_SNF3_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113739955-1874658 11G05_rep_C_Methylhydantoin-5-(D)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113739955-1874658 11G05_rep_C_Methylhydantoin-5-(D)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ5_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_171.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control109_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control109_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M10_id_MSn_negative.mzML at line 21
index 336 is out of bounds for axis 0 with size 336
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125935190-1863212 04B11_rep_A_Praziquantela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125935190-1863212 04B11_rep_A_Praziquantela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_169.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151522948-1924966 4_H7_SNF3_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151522948-1924966 4_H7_SNF3_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/chbC_P3A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (chbC_P3A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_15_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_15_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM5A005.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150436240-1864808 02G02_rep_C_Verapamil hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150436240-1864808 02G02_rep_C_Verapamil hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223429340-1870128 01H08_rep_B_Prednisoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223429340-1870128 01H08_rep_B_Prednisoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C10_id_MSn_negative.mzML at line 21
index 333 is out of bounds for axis 0 with size 333
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101534092-1869508 07H02_rep_C_Hexetidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101534092-1869508 07H02_rep_C_Hexetidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.cat_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_115_2B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Blank_5_B-A1_1_5560.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I5_id_MSn_positive.mzML at line 21
index 440 is out of bounds for axis 0 with size 440
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-075.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-075.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Cupriavidus_pauculus_MSL_348.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123506733-1876131 08E05_rep_B_Butenafine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123506733-1876131 08E05_rep_B_Butenafine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_O22_id_MSn_negative.mzML at line 21
index 356 is out of bounds for axis 0 with size 356
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N10.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/111.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P20_id.mzML at line 21
index 573 is out of bounds for axis 0 with size 573
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114625715-1875078 12C04_rep_A_Diloxanide_furoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114625715-1875078 12C04_rep_A_Diloxanide_furoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/027_CRa_H9M5_M470_H14_K3_low_pos.mzXML at line 689
Premature end of data in tag peaks line 14080, line 14084, column 24055 (027_CRa_H9M5_M470_H14_K3_low_pos.mzXML, line 14084)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_E12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rutA_P3F7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (rutA_P3F7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D13_id.mzML at line 21
index 509 is out of bounds for axis 0 with size 509
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ6_7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC03.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121422928-1866936 04B11_rep_B_Praziquantela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121422928-1866936 04B11_rep_B_Praziquantela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113130402-1874400 11D11_rep_B_Ethopropazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113130402-1874400 11D11_rep_B_Ethopropazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_65.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/55-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_16_Blood_CMC_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 88 (Mouse_16_Blood_CMC_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD1_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B20_id_MSn_negative.mzML at line 21
index 252 is out of bounds for axis 0 with size 252
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112201006-1873570 10B11_rep_D_Ebselenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112201006-1873570 10B11_rep_D_Ebselenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122235949-1867325 04D01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122235949-1867325 04D01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case117_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case117_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD6_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_E11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201000178-1881717 16E01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201000178-1881717 16E01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S005_0126_190128210611.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124550514-1862544 03D03_rep_B_Thalidomidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124550514-1862544 03D03_rep_B_Thalidomidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_B6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145620850-1863939 02E03_rep_A_Amfepramone hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145620850-1863939 02E03_rep_A_Amfepramone hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GC7_01_16810.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170207_041EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/bf/2d7acd5e6dcbc461dc15c6ac7af8bb/input_file/SH10_20170207_041EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C14_id_MSn_negative.mzML at line 21
index 318 is out of bounds for axis 0 with size 318
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_E2_id_positive.mzML at line 21
index 316 is out of bounds for axis 0 with size 316
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122424889-1867413 04D09_rep_D_Cinnarizineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122424889-1867413 04D09_rep_D_Cinnarizineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080949/ccms_peak/peaks/3injections_inj3_POS.mzXML at line 689
attributes construct error, line 41, column 76 (3injections_inj3_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_030ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/5c/0d769478e709c120ad252fba9dec05/input_file/QC_20170209_030ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152038641-1576719 Batch1_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GC10_01_17259.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/8.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153128341-1868462 06E02_rep_B_Estradiol-17_betaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153128341-1868462 06E02_rep_B_Estradiol-17_betaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201615282-1877996 09C08_rep_C_Acefyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201615282-1877996 09C08_rep_C_Acefyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150434425-1924411 1_A5_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150434425-1924411 1_A5_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083206.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpMat3_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD077_P1-A-6_01_3270.mzML at line 689
AttValue: " or ' expected, line 345886, column 45 (CD077_P1-A-6_01_3270.mzML, line 345886)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBsubR13h3b.mzML at line 689
Unescaped '<' not allowed in attributes values, line 38198, column 179 (pBsubR13h3b.mzML, line 38198)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201135748-1881788 16C02_rep_B_(R)-Duloxetine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201135748-1881788 16C02_rep_B_(R)-Duloxetine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101051938-1869285 07D10_rep_B_Imipenema.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101051938-1869285 07D10_rep_B_Imipenema.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125506148-1877032 12A02_rep_D_Niacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125506148-1877032 12A02_rep_D_Niacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroK_P4B8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (aroK_P4B8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085122/peak/3.mzXML at line 255
Error -3 while decompressing data: invalid code lengths set
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122306537-1879864 15B09_rep_C_Methenaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122306537-1879864 15B09_rep_C_Methenaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122945539-1867671 05H01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122945539-1867671 05H01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2F06P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/4-methyl-2-oxopentanoic_acid_neg.mzXML at line 689
Premature end of data in tag peaks line 6367, line 6371, column 11754 (4-methyl-2-oxopentanoic_acid_neg.mzXML, line 6371)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111606489-1921530 1_D11_GAP1_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111606489-1921530 1_D11_GAP1_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122020176-1867216 04C09_rep_C_Vinpocetinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122020176-1867216 04C09_rep_C_Vinpocetinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD1_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD1_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150228717-1924306 1_B4_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150228717-1924306 1_B4_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122221447-1867313 04E08_rep_D_Oxybutynin_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122221447-1867313 04E08_rep_D_Oxybutynin_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153312956-1577330 Batch3_KNS62_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150529855-1864850 02A05_rep_C_Moroxidine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150529855-1864850 02A05_rep_C_Moroxidine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aceE_P3G6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (aceE_P3G6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metH_P3C12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (metH_P3C12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151103510-1924745 3_G10_SNF3_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151103510-1924745 3_G10_SNF3_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093113646-1879143 14C01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093113646-1879143 14C01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/blank_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw4_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_6_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125406415-1862941 03H07_rep_D_Dilazep_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125406415-1862941 03H07_rep_D_Dilazep_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiF_P3F8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (thiF_P3F8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150056750-1864159 02B04_rep_B_Azacyclonola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150056750-1864159 02B04_rep_B_Azacyclonola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_25_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_25_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR331_5h1a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_G5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152736702-1577057 Batch2_IGROV1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125521951-1877044 12D01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125521951-1877044 12D01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A1_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150449627-1924423 1_B5_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150449627-1924423 1_B5_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113720120-1922595 3_E10_STE2_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113720120-1922595 3_E10_STE2_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112028802-1873017 10A10_rep_C_Sulfanilamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112028802-1873017 10A10_rep_C_Sulfanilamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151951467-1576682 Batch1_BT549_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151817776-1867850 05C11_rep_C_Clozapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151817776-1867850 05C11_rep_C_Clozapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-050_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153139863-1577255 Batch4_NCIH2009_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-070.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-070.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_189.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152432126-1868143 05A08_rep_D_Cefoperazone_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152432126-1868143 05A08_rep_D_Cefoperazone_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152758233-1868302 06C11_rep_A_Cisapridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152758233-1868302 06C11_rep_A_Cisapridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aceF_P4C4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (aceF_P4C4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_C4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152819383-1868318 06G09_rep_A_Neostigmine_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152819383-1868318 06G09_rep_A_Neostigmine_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092616724-1878915 14H06_rep_B_Ronidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092616724-1878915 14H06_rep_B_Ronidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-cc7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123748310-1876259 08B04_rep_C_Troglitazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123748310-1876259 08B04_rep_C_Troglitazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_D8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-cc2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121148578-1879352 14D05_rep_D_Cyproterone_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121148578-1879352 14D05_rep_D_Cyproterone_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152954557-1868393 06H01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152954557-1868393 06H01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153248451-1577310 Batch5_EBC1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080621.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150607803-1924490 1_H7_RGT2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150607803-1924490 1_H7_RGT2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydcV_#2_P4A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (ydcV_#2_P4A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argE_P3D5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (argE_P3D5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113543465-1874565 11D05_rep_C_Novobiocin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113543465-1874565 11D05_rep_C_Novobiocin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/modB_P5A12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (modB_P5A12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150452977-1864821 02H05_rep_C_Josamycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150452977-1864821 02H05_rep_C_Josamycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124641108-1876683 09C02_rep_A_Pranlukastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124641108-1876683 09C02_rep_A_Pranlukastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_C7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121732577-1867084 04B11_rep_C_Praziquantela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121732577-1867084 04B11_rep_C_Praziquantela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A1_id_MSn_positive_20240410175124.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-blank1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-blank1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E9_id_MSn_positive.mzML at line 21
index 456 is out of bounds for axis 0 with size 456
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/383.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L3cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L3cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8F03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc051_neg.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc051_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122458268-1867440 04A11_rep_D_Alprenolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122458268-1867440 04A11_rep_D_Alprenolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0029_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gatA_P4D2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (gatA_P4D2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/391.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_185.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_185.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153305474-1577324 Batch4_MDAMB435S_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222730378-1869812 01C10_rep_A_Antipyrineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222730378-1869812 01C10_rep_A_Antipyrineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E20_id_MSn_positive.mzML at line 21
index 468 is out of bounds for axis 0 with size 468
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P8_id_negative.mzML at line 21
index 265 is out of bounds for axis 0 with size 265
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_P_E2E3_C_02Feb18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078960/ccms_peak/SoceGT47-Pmix_SPL-P124-6+5+4_RA4_01_20439.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/380.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_C7_id_positive.mzML at line 21
index 376 is out of bounds for axis 0 with size 376
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/skm5p_aroA_P4B4_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (skm5p_aroA_P4B4_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100509641-1869011 06B06_rep_D_Modafinila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100509641-1869011 06B06_rep_D_Modafinila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H10_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122755801-1867584 05B08_rep_A_Procainamide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122755801-1867584 05B08_rep_A_Procainamide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET66.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET66.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Acido_24188.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125942199-1877245 13F08_rep_A_Etilefrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125942199-1877245 13F08_rep_A_Etilefrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/467-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123036742-1875913 08E11_rep_A_Hydroxychloroquine_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123036742-1875913 08E11_rep_A_Hydroxychloroquine_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_130a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113841855-1874708 11G08_rep_D_Paromomycin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113841855-1874708 11G08_rep_D_Paromomycin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_H8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152333665-1868099 05D02_rep_D_Chlorthalidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152333665-1868099 05D02_rep_D_Chlorthalidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_H3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092831420-1879019 14D07_rep_B_Ciprofibrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092831420-1879019 14D07_rep_B_Ciprofibrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153452909-1868623 06H07_rep_C_Primaquine_diphosphateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153452909-1868623 06H07_rep_C_Primaquine_diphosphateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-046.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-046.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223100563-1869970 01A04_rep_A_Acetazolamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223100563-1869970 01A04_rep_A_Acetazolamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125128297-1862813 03A05_rep_C_Ornidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125128297-1862813 03A05_rep_C_Ornidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/032_CRa_H9M5_M470_Blank_08_low_pos.mzXML at line 689
Premature end of data in tag peaks line 15467, line 15471, column 3575 (032_CRa_H9M5_M470_Blank_08_low_pos.mzXML, line 15471)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151956692-1576686 Batch1_NCIH2073_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gabP_P3F5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (gabP_P3F5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113218953-1922334 1_D4_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113218953-1922334 1_D4_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_C5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130223231-1877366 13F09_rep_B_Alprostadilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130223231-1877366 13F09_rep_B_Alprostadilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metB_P3C1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (metB_P3C1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_05_AC+_25.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202343658-1878343 10G10_rep_A_Drofenine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202343658-1878343 10G10_rep_A_Drofenine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_16061440_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190336784-1889799 Wb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080612.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081555/raw/FullSpectra-mzML/B031_GenbankAccession-KY858239.mzML at line 689
Extra content at the end of the document, line 229206, column 1 (B031_GenbankAccession-KY858239.mzML, line 229206)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control132_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control132_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpA_P4H6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (atpA_P4H6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121607302-1879545 15F10_rep_A_Nalmefene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121607302-1879545 15F10_rep_A_Nalmefene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153510937-1577426 Batch4_SKOV3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112033996-1873021 10H11_rep_C_Amrinoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112033996-1873021 10H11_rep_C_Amrinoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_249.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112724762-1874213 11H02_rep_A_Iopamidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112724762-1874213 11H02_rep_A_Iopamidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089570/ccms_peak/fabiansfd/Parameters Acantho/Manzamine A HCl.mzML at line 689
Opening and ending tag mismatch: binary line 257539 and scanWindow, line 257541, column 30 (Manzamine A HCl.mzML, line 257541)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H8_id_MSn_positive.mzML at line 21
index 588 is out of bounds for axis 0 with size 588
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112915744-1874301 11G08_rep_A_Paromomycin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112915744-1874301 11G08_rep_A_Paromomycin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121453870-1866960 04E10_rep_B_Pyrilamine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121453870-1866960 04E10_rep_B_Pyrilamine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113733611-1874653 11B04_rep_C_Bucladesine_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113733611-1874653 11B04_rep_C_Bucladesine_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201252881-1877849 09G02_rep_B_Trihexyphenidyl-D,L_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201252881-1877849 09G02_rep_B_Trihexyphenidyl-D,L_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_Blood2_NEG.mzXML at line 689
attributes construct error, line 38, column 74 (Person4_Blood2_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_C6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082735/ccms_peak/ST000664/EX00347-lipidomics/Raw data/NEG/BATCH3/20150406_Authentic.mzXML at line 689
Extra content at the end of the document, line 57095, column 1 (20150406_Authentic.mzXML, line 57095)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091736877-1878508 13D10_rep_D_Proguanil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091736877-1878508 13D10_rep_D_Proguanil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/487-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_9_B-A2_1_5851.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007508_031618-0.01Thr2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/16_D24062013T1915_1399CBU_0015_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084884/updates/2020-02-03_jamirimoghaddam_67410a78/raw/w20_MB.mzML at line 689
AttValue: ' expected, line 304169, column 92 (w20_MB.mzML, line 304169)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S116.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S116.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201216288-1877822 09E04_rep_B_Pempidine_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201216288-1877822 09E04_rep_B_Pempidine_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_17111316_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pepD_#2_P5D3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (pepD_#2_P5D3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hybC_P3H9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (hybC_P3H9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087808/raw/RIGHT_SSL_EI_sleep_STER_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1626.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1626.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125416140-1862949 03G08_rep_D_Clemizole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125416140-1862949 03G08_rep_D_Clemizole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151626068-1925016 4_H4_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151626068-1925016 4_H4_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acrF_P4D3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (acrF_P4D3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092205911-1878719 14G07_rep_A_Meropenemb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092205911-1878719 14G07_rep_A_Meropenemb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122926929-1867656 05B04_rep_B_Zidovudine,_AZTa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122926929-1867656 05B04_rep_B_Zidovudine,_AZTa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122857985-1867633 05A02_rep_A_Streptomycin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122857985-1867633 05A02_rep_A_Streptomycin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3E04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E8_id.mzML at line 21
index 523 is out of bounds for axis 0 with size 523
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fruK_P3G12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (fruK_P3G12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_18111330_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_C5_id_MSn_positive.mzML at line 21
index 453 is out of bounds for axis 0 with size 453
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112837335-1874271 11E06_rep_A_Amiprilose_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112837335-1874271 11E06_rep_A_Amiprilose_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114416338-1874979 12E10_rep_A_Ketorolac_tromethamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114416338-1874979 12E10_rep_A_Ketorolac_tromethamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223847609-2227677 PAT38.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/768.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix11_160602050406.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_55_NOR_48.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_55_NOR_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D17_id_MSn_positive.mzML at line 21
index 759 is out of bounds for axis 0 with size 759
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124711652-1862608 03H11_rep_B_Proglumidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124711652-1862608 03H11_rep_B_Proglumidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/302.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/serB_#1_P5A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (serB_#1_P5A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092403491-1878811 14D07_rep_A_Ciprofibrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092403491-1878811 14D07_rep_A_Ciprofibrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007515_031618-0.01Thr4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123922996-1876335 08D03_rep_C_Etofenamateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123922996-1876335 08D03_rep_C_Etofenamateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-CCM-PA-water-01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210313_LKM_mb_rapid_beads_30min_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_F5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122925712-1867655 05B10_rep_B_Guanfacine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122925712-1867655 05B10_rep_B_Guanfacine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_F1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152908848-1577135 Batch5_NCIH3255_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202009188-1882176 16B04_rep_D_Rizatriptan_benzoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202009188-1882176 16B04_rep_D_Rizatriptan_benzoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122545740-1879986 15B04_rep_D_Bromhexine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122545740-1879986 15B04_rep_D_Bromhexine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122506877-1879956 15G04_rep_C_Gemcitabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122506877-1879956 15G04_rep_C_Gemcitabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223040484-1869955 01A01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223040484-1869955 01A01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Serratia_liquefaciens_P17_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152748627-1577067 Batch1_HCC15_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111451266-1921080 1_C2_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111451266-1921080 1_C2_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200939789-1881702 16B08_rep_A_Tolcaponeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200939789-1881702 16B08_rep_A_Tolcaponeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122311635-1879868 15A11_rep_C_Estradiol_Valeratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122311635-1879868 15A11_rep_C_Estradiol_Valeratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130107107-1877307 13G09_rep_B_Benzathine_benzylpenicillina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130107107-1877307 13G09_rep_B_Benzathine_benzylpenicillina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_68_AC+_50.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/644.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224246010-1870511 01C02_rep_D_Sulfaphenazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224246010-1870511 01C02_rep_D_Sulfaphenazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_233.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130319972-1877410 13A02_rep_B_Denatonium_benzoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130319972-1877410 13A02_rep_B_Denatonium_benzoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151341092-1576375 Batch7_NCIH1734_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201405121-1881900 16F04_rep_B_Terbinafineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201405121-1881900 16F04_rep_B_Terbinafineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124545723-1862423 03E04_rep_B_Flufenamic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124545723-1862423 03E04_rep_B_Flufenamic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130802721-1877633 13E03_rep_C_Alfaxalonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130802721-1877633 13E03_rep_C_Alfaxalonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yeiG_P4B10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (yeiG_P4B10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123931771-1876342 08H08_rep_D_Levetiracetama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123931771-1876342 08H08_rep_D_Levetiracetama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_28.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_28.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151435029-1576420 Batch7_SUM149PT_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122339037-1879889 15H07_rep_C_Rosiglitazone_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122339037-1879889 15H07_rep_C_Rosiglitazone_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H7_id_MSn_positive.mzML at line 21
index 685 is out of bounds for axis 0 with size 685
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092016255-1878634 13C11_rep_D_Phenylbutazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092016255-1878634 13C11_rep_D_Phenylbutazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hC2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hC2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153342801-1577354 Batch5_NCIH1650_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009452_IBD200_E7_A3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/768.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125612626-1877083 12C08_rep_D_S-(+)-ibuprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125612626-1877083 12C08_rep_D_S-(+)-ibuprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121409240-1866926 04H02_rep_B_Ifenprodil_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121409240-1866926 04H02_rep_B_Ifenprodil_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaS_P3A8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (waaS_P3A8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202509031-1878410 10H08_rep_A_Methotrimeprazine_maleat_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202509031-1878410 10H08_rep_A_Methotrimeprazine_maleat_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153011051-1577187 Batch3_PANC0403_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/237.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152700151-1868257 06B10_rep_A_Bisacodylb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152700151-1868257 06B10_rep_A_Bisacodylb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112923849-1874307 11H09_rep_A_Ioversolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112923849-1874307 11H09_rep_A_Ioversolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hB2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hB2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009735_IBD200_E20_A3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202102675-1878216 09D03_rep_D_Sumatriptan_succinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202102675-1878216 09D03_rep_D_Sumatriptan_succinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152233716-1576810 Batch1_NCIH1993_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190321192-1889787 Wb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112812139-1874251 11G09_rep_A_Acetaminophenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112812139-1874251 11G09_rep_A_Acetaminophenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153633213-1577494 Batch4_ASPC1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152900233-1868350 06F04_rep_A_Calcipotrienea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152900233-1868350 06F04_rep_A_Calcipotrienea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_3mM_D_AC_AS.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_3mM_D_AC_AS.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD3_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113621913-1922545 2_C8_IZH2_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113621913-1922545 2_C8_IZH2_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170207_033EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/af/4095eb5ab3bcb6827391ffab94e5b1/input_file/MMW5_20170207_033EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case192_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case192_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD1_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114708111-1875111 12A03_rep_B_Bemegrideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114708111-1875111 12A03_rep_B_Bemegrideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123558023-1876172 08H06_rep_C_Aceclidine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123558023-1876172 08H06_rep_C_Aceclidine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201640750-1878015 09E03_rep_C_Secnidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201640750-1878015 09E03_rep_C_Secnidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GA4_01_11903.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152100097-1576736 Batch1_HCC38_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S98.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S98.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P21_id.mzML at line 21
index 553 is out of bounds for axis 0 with size 553
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_B7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153430326-1868605 06F11_rep_B_Dinoprost_trometamolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153430326-1868605 06F11_rep_B_Dinoprost_trometamolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_C7_id_negative.mzML at line 21
index 212 is out of bounds for axis 0 with size 212
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_E12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170127_063ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/55/e56a2ca53499ad952ddcb09e2720de/input_file/MMW5_20170127_063ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F12_id_MSn_negative.mzML at line 21
index 327 is out of bounds for axis 0 with size 327
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1K005.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095538/raw/3dhq_13C_CE10_msAG231_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024765 (3dhq_13C_CE10_msAG231_Aquity_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_19071524_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/312.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113630263-1874602 11F05_rep_C_Roxithromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113630263-1874602 11F05_rep_C_Roxithromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_E7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124925159-1862715 03D11_rep_B_Camptothecine_(S,+)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124925159-1862715 03D11_rep_B_Camptothecine_(S,+)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123521597-1876143 08C08_rep_B_Cilostazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123521597-1876143 08C08_rep_B_Cilostazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/proA_P3E9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (proA_P3E9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150637630-1864902 02D09_rep_C_Nalbuphine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150637630-1864902 02D09_rep_C_Nalbuphine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151133259-1576269 Batch5_SHP77_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_48.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124350741-1862333 03H10_rep_A_Orphenadrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124350741-1862333 03H10_rep_A_Orphenadrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100624713-1869071 07D08_rep_A_Nystatinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100624713-1869071 07D08_rep_A_Nystatinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130030270-1877280 13F04_rep_A_Deptropine_citrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130030270-1877280 13F04_rep_A_Deptropine_citrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/555-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112531014-1874123 10D01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112531014-1874123 10D01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091038/metadata/miltonsilva/Negative_samples/CM-Fo-P2_Neg.mzML at line 689
AttValue: " or ' expected, line 363860, column 41 (CM-Fo-P2_Neg.mzML, line 363860)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_E3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_AW4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075191.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082692/ccms_peak/ST000665/EX00348-lipidomics/Raw data/NEG/Pooled.mzXML at line 689
error parsing attribute name, line 11450, column 8 (Pooled.mzXML, line 11450)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113834486-1874702 11B01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113834486-1874702 11B01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GG2_01_17098.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112706991-1922102 4_E4_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112706991-1922102 4_E4_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample150_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112209772-1921842 3_H3_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112209772-1921842 3_H3_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_0123_190123225756.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-005_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121838608-1867136 04G05_rep_C_Econazole_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121838608-1867136 04G05_rep_C_Econazole_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I13_id_MSn_positive.mzML at line 21
index 600 is out of bounds for axis 0 with size 600
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/34.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_138.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P14_id.mzML at line 21
index 526 is out of bounds for axis 0 with size 526
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2D03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153324034-1577339 Batch5_NCIH1650_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_G11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_E9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD4_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201734949-1878056 09D11_rep_C_Warfarina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201734949-1878056 09D11_rep_C_Warfarina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ1_1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_H7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150727656-1924559 2_A2_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150727656-1924559 2_A2_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223335080-1870087 01E01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223335080-1870087 01E01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B4_id.mzML at line 21
index 527 is out of bounds for axis 0 with size 527
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130035958-1863261 04D07_rep_A_Bumetanideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130035958-1863261 04D07_rep_A_Bumetanideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/388.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/116.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_10_CNR_47.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_10_CNR_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153059692-1868440 06C08_rep_B_Dibenzepine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153059692-1868440 06C08_rep_B_Dibenzepine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153522151-1577435 Batch4_ASPC1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample216_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150904218-1865016 02E07_rep_D_Mefloquine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150904218-1865016 02E07_rep_D_Mefloquine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_20_NOR_51.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_20_NOR_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/175-4_idMsMs_25min_40eV_GE2_01_4241.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121330311-1866897 04G08_rep_B_Oxytetracycline_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121330311-1866897 04G08_rep_B_Oxytetracycline_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124315387-1876521 08D11_rep_D_Zopicloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124315387-1876521 08D11_rep_D_Zopicloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/004_Nitrate_Day17_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111746484-1871638 10A01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111746484-1871638 10A01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYH003B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201038306-1877751 09G09_rep_B_Benzethonium_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201038306-1877751 09G09_rep_B_Benzethonium_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2C02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150945591-1865048 02B06_rep_D_Lynestrenola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150945591-1865048 02B06_rep_D_Lynestrenola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0020_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111914029-1872573 10B10_rep_C_Levonordefrina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111914029-1872573 10B10_rep_C_Levonordefrina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L5_id_MSn_positive.mzML at line 21
index 507 is out of bounds for axis 0 with size 507
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GA10_01_12073.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_H7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gor_P3F11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (gor_P3F11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/253.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/233.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202207668-1878267 10H02_rep_A_(R)_-Naproxen_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202207668-1878267 10H02_rep_A_(R)_-Naproxen_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-013_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O11_id_negative.mzML at line 21
index 238 is out of bounds for axis 0 with size 238
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113803839-1874677 11G01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113803839-1874677 11G01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417190026.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114557029-1875056 12G01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114557029-1875056 12G01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OAW4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202304802-1878312 10B05_rep_A_Flumethasonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202304802-1878312 10B05_rep_A_Flumethasonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MIXEE_20170127_005ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/7a/a70cdc19e85aa9e7d5f0f76ea8c571/input_file/MIXEE_20170127_005ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125829963-1863157 04F01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125829963-1863157 04F01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_120_1B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_168.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4F03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152733088-1577054 Batch2_NCIH838_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153940089-1577651 Batch6_CCRFCEM_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHH03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122111829-1867257 04H02_rep_C_Ifenprodil_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122111829-1867257 04H02_rep_C_Ifenprodil_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample142.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GA5_01_16786.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4H05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224322728-1870540 01A01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224322728-1870540 01A01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113158196-1922316 1_E1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113158196-1922316 1_E1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125638383-1863064 03H04_rep_D_Hyoscyamine_(L)_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125638383-1863064 03H04_rep_D_Hyoscyamine_(L)_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150838524-1864996 02B07_rep_D_Guanabenz acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150838524-1864996 02B07_rep_D_Guanabenz acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153533340-1577444 Batch4_SW1573_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yqhD_P3H11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (yqhD_P3H11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1B08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/puuD_#2_P5D11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (puuD_#2_P5D11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fabI_P4F8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (fabI_P4F8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GH10_01_17003.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009670_IBD200_E17_B2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNQ865_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5F04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/fdp_fbaA_P5F12_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (fdp_fbaA_P5F12_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150854161-1865008 02B05_rep_D_Azathioprinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150854161-1865008 02B05_rep_D_Azathioprinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121756722-1867103 04A09_rep_C_Clonidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121756722-1867103 04A09_rep_C_Clonidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/blank_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dtpB_P3E12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (dtpB_P3E12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/433.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GD2_01_16819.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_dilute_190131183620.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ppa_P3B1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (ppa_P3B1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190350925-1889810 NNa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_143.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/300.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ttdT_P3E2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (ttdT_P3E2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1768.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1768.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ompC_P3F12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ompC_P3F12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_A4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/818.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201220_LKM_1to1_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122850180-1867627 05G05_rep_A_Probucolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122850180-1867627 05G05_rep_A_Probucolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112927735-1874310 11A11_rep_A_Sulconazole_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112927735-1874310 11A11_rep_A_Sulconazole_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153554923-1577462 Batch4_184A1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_54.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_54.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H16_id_MSn_negative.mzML at line 21
index 349 is out of bounds for axis 0 with size 349
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD1_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/419.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample113.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130442011-1877474 13E04_rep_B_Azapropazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130442011-1877474 13E04_rep_B_Azapropazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092257616-1878760 14F03_rep_A_Ranolazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092257616-1878760 14F03_rep_A_Ranolazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD6_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR224h2a.mzML at line 689
error parsing attribute name, line 47318, column 18 (pMIBSDR224h2a.mzML, line 47318)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD1_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122835034-1875818 08D07_rep_A_Fomepizolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122835034-1875818 08D07_rep_A_Fomepizolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_C12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_10_male_2022_1017_Michael_neg-0.0028.mzML at line 689
Premature end of data in tag binary line 21821, line 21821, column 527676 (2_10_male_2022_1017_Michael_neg-0.0028.mzML, line 21821)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100559898-1869051 07B11_rep_A_Ethamivana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100559898-1869051 07B11_rep_A_Ethamivana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088447/raw/Aurafathia0102_/210924_09.mzXML at line 689
Premature end of data in tag peaks line 41695, line 41699, column 853 (210924_09.mzXML, line 41699)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112732057-1874219 11H05_rep_A_Theobromineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112732057-1874219 11H05_rep_A_Theobromineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150423382-1864798 02A02_rep_C_Metronidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150423382-1864798 02A02_rep_C_Metronidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092413870-1878819 14C09_rep_A_Thiethylperazine_dimalate_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092413870-1878819 14C09_rep_A_Thiethylperazine_dimalate_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/401.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYC002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S05_0124_190125084353.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152857825-1868348 06B05_rep_A_Amlodipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152857825-1868348 06B05_rep_A_Amlodipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101447303-1869473 07A04_rep_C_Rofecoxiba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101447303-1869473 07A04_rep_C_Rofecoxiba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C12_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lhgO_P3B4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (lhgO_P3B4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201529781-1881961 16F01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201529781-1881961 16F01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_blood_24h_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Volunteer3_blood_24h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151841547-1867869 05E06_rep_C_Brinzolamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151841547-1867869 05E06_rep_C_Brinzolamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150733455-1924564 2_A8_RGT2_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150733455-1924564 2_A8_RGT2_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ftsI_P3B5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ftsI_P3B5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L16_id.mzML at line 21
index 565 is out of bounds for axis 0 with size 565
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/manX_#1_P4F12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (manX_#1_P4F12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122328908-1867368 04C06_rep_D_Dimenhydrinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122328908-1867368 04C06_rep_D_Dimenhydrinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125910330-1863191 04B03_rep_A_Diphenidol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125910330-1863191 04B03_rep_A_Diphenidol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_dilute_190131221220.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_0123.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_E6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170125_063EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/03/e460f878aa4b28821d5664779cb9ce/input_file/MMW3_20170125_063EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_164.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_117.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD5_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/730.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_06_RIN_51.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_06_RIN_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/206-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/609.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/blank_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_011ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c9/c08e97c074f63fed18b82f8b63c3de/input_file/QC_20170127_011ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2E05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person28_plasma_youth_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person28_plasma_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/346.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GF10_01_16855.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086486/ccms_peak/peak/sample/MSplate12_ubiF_b0662_F7_platePN_rep2_SALT_GEIII_-0-155_1515.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (MSplate12_ubiF_b0662_F7_platePN_rep2_SALT_GEIII_-0-155_1515.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G3_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/914.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145800841-1864020 02G10_rep_A_Thioproperazine dimesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145800841-1864020 02G10_rep_A_Thioproperazine dimesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125704560-1877123 13E08_rep_A_Fursultiamine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125704560-1877123 13E08_rep_A_Fursultiamine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093241905-1879214 14E05_rep_C_Levalbuterol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093241905-1879214 14E05_rep_C_Levalbuterol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113957028-1922733 3_G7_STE2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113957028-1922733 3_G7_STE2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_264.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124509058-1876614 09E10_rep_A_Butylscopolammonium_(n-)_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124509058-1876614 09E10_rep_A_Butylscopolammonium_(n-)_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124106749-1876417 08E11_rep_D_Hydroxychloroquine_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124106749-1876417 08E11_rep_D_Hydroxychloroquine_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151329710-1924871 3_C3_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151329710-1924871 3_C3_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211005_LKM_beads_mb_silica1_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A5_id_MSn_negative.mzML at line 21
index 136 is out of bounds for axis 0 with size 136
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narV_P3G8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (narV_P3G8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD5_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD5_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114409136-1874973 12H06_rep_A_Florfenicolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114409136-1874973 12H06_rep_A_Florfenicolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A14_id_MSn_negative.mzML at line 21
index 278 is out of bounds for axis 0 with size 278
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092960/raw/HILIC_plusDDA/HILIC/20221111-JC-471_HILIC_049_01.mzML at line 689
Premature end of data in tag binary line 31783, line 31783, column 21363 (20221111-JC-471_HILIC_049_01.mzML, line 31783)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GC2_01_16930.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample107.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122441333-1879936 15F11_rep_C_Bifonazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122441333-1879936 15F11_rep_C_Bifonazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085105/peak/New directory FOR KWAKU/KK5_RB5_01_13692.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/oppF_#1_P5E10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (oppF_#1_P5E10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E17_id_MSn_positive.mzML at line 21
index 601 is out of bounds for axis 0 with size 601
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GB9_01_16925.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153202854-1868489 06H07_rep_B_Primaquine_diphosphateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153202854-1868489 06H07_rep_B_Primaquine_diphosphateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yagF_P3G12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (yagF_P3G12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100653183-1869094 07G03_rep_A_Probenecidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100653183-1869094 07G03_rep_A_Probenecidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153206313-1577276 Batch5_NCIH727_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/otsA_P3C11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (otsA_P3C11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/005_Urea_Day17_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GE4_01_11979.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/blank_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080623.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100629554-1869075 07B07_rep_A_Tiaprofenic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100629554-1869075 07B07_rep_A_Tiaprofenic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_63.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC08_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR324h2a.mzML at line 689
expected '>', line 210089, column 19 (pBlateR324h2a.mzML, line 210089)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121045992-1879305 14G08_rep_D_Ramiprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121045992-1879305 14G08_rep_D_Ramiprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1018.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190125102334.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150543490-1924469 1_H5_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150543490-1924469 1_H5_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152310425-1576839 Batch2_NCIH522_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/004_Nitrate_Day11_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223906659-1870342 01A08_rep_C_Amiloride hydrochloride dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223906659-1870342 01A08_rep_C_Amiloride hydrochloride dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_081a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112758683-1922148 4_A9_GPR1_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112758683-1922148 4_A9_GPR1_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090213/ccms_peak/9March2022_025_VH WD Trang 10x_neg 2.mzML at line 689
attributes construct error, line 9217419, column 53 (9March2022_025_VH WD Trang 10x_neg 2.mzML, line 9217419)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100841490-1869181 07H03_rep_A_Selegiline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100841490-1869181 07H03_rep_A_Selegiline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ROO1_20EV_RA1_01_22700.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/oppD_P4E9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (oppD_P4E9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078776/ccms_peak/Spectra_WT_MT_NT_mzXML/140424_ACN+BOC.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122123878-1867267 04E03_rep_D_Fenoterol_hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122123878-1867267 04E03_rep_D_Fenoterol_hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100331478-1868933 06H09_rep_D_Felodipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100331478-1868933 06H09_rep_D_Felodipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202047337-1878204 09E04_rep_D_Pempidine_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202047337-1878204 09E04_rep_D_Pempidine_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C7_id_MSn_negative.mzML at line 21
index 330 is out of bounds for axis 0 with size 330
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2T008.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ribE_P5B4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ribE_P5B4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_107.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121504011-1879498 15H10_rep_A_Acetylsalicylic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121504011-1879498 15H10_rep_A_Acetylsalicylic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125600097-1877073 12A08_rep_D_Oxybenzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125600097-1877073 12A08_rep_D_Oxybenzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/176-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224000990-1870383 01A06_rep_D_Atracurium besylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224000990-1870383 01A06_rep_D_Atracurium besylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153012433-1577188 Batch3_MGHU3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114509867-1875022 12F02_rep_A_Propofola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114509867-1875022 12F02_rep_A_Propofola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike1_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_17_male_2022_1017_Michael_neg-0.0037.mzML at line 689
Premature end of data in tag binary line 21289, line 21289, column 1773967 (2_17_male_2022_1017_Michael_neg-0.0037.mzML, line 21289)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201047440-1881752 16F03_rep_B_Indinavir_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201047440-1881752 16F03_rep_B_Indinavir_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165735818-2227487 PAT42.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092744/ccms_peak/WT_CoQ6_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_E4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_D5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190347040-1889807 NNb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170209_027ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e1/a756a5d24f421a02f9c571042a035e/input_file/MMW6_20170209_027ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yjiA_P3A8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (yjiA_P3A8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121521379-1866981 04F06_rep_B_Pergolide_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121521379-1866981 04F06_rep_B_Pergolide_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125110443-1862799 03F02_rep_C_Piroxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125110443-1862799 03F02_rep_C_Piroxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample147_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123050533-1875924 08D10_rep_A_Celiprolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123050533-1875924 08D10_rep_A_Celiprolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152156962-1576781 Batch1_NCIH1703_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121356243-1879447 15G05_rep_A_Olmesartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121356243-1879447 15G05_rep_A_Olmesartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122542948-1879984 15C05_rep_D_Carprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122542948-1879984 15C05_rep_D_Carprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112256674-1921883 3_E2_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112256674-1921883 3_E2_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MIXEE_20170127_005ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/9b/4cdf294afb47ccdc55cec67ea47940/input_file/MIXEE_20170127_005ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114607393-1875064 12D06_rep_A_Lorglumide_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114607393-1875064 12D06_rep_A_Lorglumide_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEP1_30EV_RA4_01_22656.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_blank_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153523359-1868647 06E03_rep_C_Clobutinol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153523359-1868647 06E03_rep_C_Clobutinol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150401436-1924383 1_H10_RGT2_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150401436-1924383 1_H10_RGT2_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223124103-1869988 01F06_rep_A_Acetohexamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223124103-1869988 01F06_rep_A_Acetohexamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_128.mzXML at line 689
Premature end of data in tag peaks line 22105, line 22109, column 11845 (20121114_128.mzXML, line 22109)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145633411-1863949 02H03_rep_A_Chloroxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145633411-1863949 02H03_rep_A_Chloroxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/121_105_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/448.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112049878-1921773 2_G11_GAP1_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112049878-1921773 2_G11_GAP1_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B14_id_negative.mzML at line 21
index 276 is out of bounds for axis 0 with size 276
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223709706-1870251 01B01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223709706-1870251 01B01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H7_id_MSn_positive.mzML at line 21
index 586 is out of bounds for axis 0 with size 586
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std c 00.3a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD3_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_81.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113312458-1922380 1_H1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113312458-1922380 1_H1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125603349-1863036 03C05_rep_D_Methocarbamola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125603349-1863036 03C05_rep_D_Methocarbamola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112150090-1921825 3_E9_GPR1_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112150090-1921825 3_E9_GPR1_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153312956-1577330 Batch3_KNS62_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125732196-1863109 03D06_rep_D_Asenapine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125732196-1863109 03D06_rep_D_Asenapine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control113_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control113_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151237673-1576322 Batch5_NCIH1755_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_085b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine79.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine79.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/306.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113924544-1922704 3_D9_STE2_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113924544-1922704 3_D9_STE2_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165858575-2227563 PAT41.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151942295-1867917 05G08_rep_C_Carbetapentane_citrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151942295-1867917 05G08_rep_C_Carbetapentane_citrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089255/raw/J2315_khmgA_noTri_rep3_P1-D-1_01_8104.mzXML at line 689
Specification mandates value for attribute precision, line 18765, column 17 (J2315_khmgA_noTri_rep3_P1-D-1_01_8104.mzXML, line 18765)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_E6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F10_id_MSn_negative.mzML at line 21
index 297 is out of bounds for axis 0 with size 297
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_CABIN_sample11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GH4_01_16880.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_2_P_rep_1_B-D1_1_5662.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_11_RIN_47.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_11_RIN_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/004_Nitrate_Day7_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_080a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201952659-1878161 09G11_rep_D_Doxofyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201952659-1878161 09G11_rep_D_Doxofyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112937058-1874317 11B02_rep_A_Auranofinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112937058-1874317 11B02_rep_A_Auranofinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3C09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30088 - GI-16-109.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_G9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151923179-1576659 Batch7_NCIH209_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/567-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122830393-1875814 08B02_rep_A_Tetracaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122830393-1875814 08B02_rep_A_Tetracaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fadL_P3H10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (fadL_P3H10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30143 - GI-16-650.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124837852-1876740 12D03_rep_C_Monobenzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124837852-1876740 12D03_rep_C_Monobenzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I6_id_MSn_negative.mzML at line 21
index 344 is out of bounds for axis 0 with size 344
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153844334-1577604 Batch6_HL60_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case211_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case211_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_sample07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike3_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_H1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114518307-1875028 12C09_rep_A_Ethynodiol_diacetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114518307-1875028 12C09_rep_A_Ethynodiol_diacetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gsiC_#2_P4H9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (gsiC_#2_P4H9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ppsA_P5F10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (ppsA_P5F10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201326258-1881871 16A05_rep_B_Nevirapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201326258-1881871 16A05_rep_B_Nevirapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/807.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/003_Soil_500mMExtra_3_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_110.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113452821-1874525 11A05_rep_C_Spectinomycin_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113452821-1874525 11A05_rep_C_Spectinomycin_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case215_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case215_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2B09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GB4_01_16793.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F21_id_MSn_positive.mzML at line 21
index 457 is out of bounds for axis 0 with size 457
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083302/peak/mzxml/S170_BC5_01_40335.mzXML at line 689
Opening and ending tag mismatch: peaks line 10348 and scan, line 10370, column 8 (S170_BC5_01_40335.mzXML, line 10370)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151952730-1576683 Batch1_BT549_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152253078-1868068 05B07_rep_D_Chlormezanonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152253078-1868068 05B07_rep_D_Chlormezanonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8A01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemC_P6B3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (hemC_P6B3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095328/peak/MS_RAW_data/230811_BBT301_TPP_HighPH_4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/754.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125303991-1876939 12E09_rep_D_Nilutamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125303991-1876939 12E09_rep_D_Nilutamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_A6_id_positive.mzML at line 21
index 273 is out of bounds for axis 0 with size 273
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ykgF_#1_P4C3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (ykgF_#1_P4C3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210328_AD_9.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_141.mzXML at line 689
Premature end of data in tag peaks line 22411, line 22415, column 11845 (20121114_141.mzXML, line 22415)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_06_337_prot_61_IMS_18Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_182.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130716278-1877596 13G06_rep_C_Letrozoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130716278-1877596 13G06_rep_C_Letrozoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8B05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD6_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1K015.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224300201-1870522 01G04_rep_D_Nifedipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224300201-1870522 01G04_rep_D_Nifedipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122332589-1867371 04C02_rep_D_Ethisteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122332589-1867371 04C02_rep_D_Ethisteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_62_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_62_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114534796-1875040 12E08_rep_A_Quinapril_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114534796-1875040 12E08_rep_A_Quinapril_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007668_032118-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100928104-1869218 07H11_rep_A_Prenylamine_lactateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100928104-1869218 07H11_rep_A_Prenylamine_lactateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093142258-1879166 14C03_rep_C_Ioxaglic_acid_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093142258-1879166 14C03_rep_C_Ioxaglic_acid_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150625351-1924505 2_H2_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150625351-1924505 2_H2_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101738819-1869610 07D10_rep_C_Imipenemb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101738819-1869610 07D10_rep_C_Imipenemb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009603_IBD200_E16_B2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101756525-1869625 07C01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101756525-1869625 07C01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113227031-1922341 1_G8_IZH2_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113227031-1922341 1_G8_IZH2_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C18_id_MSn_negative.mzML at line 21
index 317 is out of bounds for axis 0 with size 317
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_G8_id_positive.mzML at line 21
index 310 is out of bounds for axis 0 with size 310
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/106_94.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/PYURF interactome/PYURF_Resin3_CEV_07122029.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222931729-1869904 01G11_rep_A_Tolnaftateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222931729-1869904 01G11_rep_A_Tolnaftateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151344658-1576378 Batch6_NCIH2171_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153402354-1577370 Batch4_NCIH1651_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101422179-1869453 07D11_rep_C_Sulfasalazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101422179-1869453 07D11_rep_C_Sulfasalazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C2_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yliI_P4D7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (yliI_P4D7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152523515-1576946 Batch2_LOXIMVI_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_17091608_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201214724-1881817 16C05_rep_B_Nitazoxanidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201214724-1881817 16C05_rep_B_Nitazoxanidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121431687-1879474 15C05_rep_A_Carprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121431687-1879474 15C05_rep_A_Carprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/9.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153049923-1577215 Batch3_PANC0403_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8C02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152124302-1868000 05A02_rep_C_Streptomycin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152124302-1868000 05A02_rep_C_Streptomycin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151714049-1576552 Batch7_RXF393_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201459466-1881941 16H01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201459466-1881941 16H01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_150.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123825986-1876289 08F02_rep_C_Loracarbefb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123825986-1876289 08F02_rep_C_Loracarbefb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122746743-1875780 08E02_rep_A_Tranilasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122746743-1875780 08E02_rep_A_Tranilasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202100868-1882216 16E10_rep_D_Zoledronic_acid_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202100868-1882216 16E10_rep_D_Zoledronic_acid_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112647823-1874184 11B10_rep_A_Moxalactam_disodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112647823-1874184 11B10_rep_A_Moxalactam_disodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L4_id_MSn_positive.mzML at line 21
index 701 is out of bounds for axis 0 with size 701
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151705652-1576545 Batch7_SKMES1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130821154-1877648 13A07_rep_C_Sotalol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130821154-1877648 13A07_rep_C_Sotalol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_146.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124622512-1862569 03B07_rep_B_Iproniazide_phosphateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124622512-1862569 03B07_rep_B_Iproniazide_phosphateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/19_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124908901-1876763 12E08_rep_C_Quinapril_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124908901-1876763 12E08_rep_C_Quinapril_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111502706-1921090 1_D8_GAP1_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111502706-1921090 1_D8_GAP1_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_C3_id_MSn_negative.mzML at line 21
index 221 is out of bounds for axis 0 with size 221
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/144-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007579_031718-5CRP6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-7-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123048712-1867717 05H05_rep_B_Kanamycin_A_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123048712-1867717 05H05_rep_B_Kanamycin_A_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kgtP_P4B9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (kgtP_P4B9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101712221-1869588 07C11_rep_C_Cyclizine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101712221-1869588 07C11_rep_C_Cyclizine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_male_2022_1017_Michael_neg-0013.mzML at line 689
Premature end of data in tag binary line 16769, line 16769, column 392985 (pooled_male_2022_1017_Michael_neg-0013.mzML, line 16769)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I3_id_MSn_positive.mzML at line 21
index 662 is out of bounds for axis 0 with size 662
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150347433-1924371 1_D7_RGT2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150347433-1924371 1_D7_RGT2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089340/raw/20200306_KBL-AK_GM_504788_Blumenol_Final_QE-HF_C18-CustMog_USDAY48854/raw_data/20200306_KBL-AK_GM_504788_Blumenol_Final_QE-HF_C18-CustMog_USDAY48854_POS_MSMS_88_Hydro-HeatCop-Leaf_4_Rg100to800-CE102040-Brachy-S1_Run252.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000089340/raw/20200306_KBL-AK_GM_504788_Blumenol_Final_QE-HF_C18-CustMog_USDAY48854/raw_data/20200306_KBL-AK_GM_504788_Blumenol_Final_QE-HF_C18-CustMog_USDAY48854_POS_MSMS_88_Hydro-HeatCop-Leaf_4_Rg100to800-CE102040-Brachy-S1_Run252.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/414.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_17111316_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100655558-1869096 07E03_rep_A_Thiostreptonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100655558-1869096 07E03_rep_A_Thiostreptonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112533159-1922020 4_G7_GPR1_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112533159-1922020 4_G7_GPR1_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_E5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_2_B_rep_3_B-B7_1_5649.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A3_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102115920-1869787 07D10_rep_D_Imipenema.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102115920-1869787 07D10_rep_D_Imipenema.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/068_66.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112728273-1922121 4_A3_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112728273-1922121 4_A3_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_low (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_227.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_9_40x_2022_1006_Michael_pos-0.0027.mzML at line 689
Premature end of data in tag binary line 3003, line 3003, column 748652 (1_9_40x_2022_1006_Michael_pos-0.0027.mzML, line 3003)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125827497-1863155 04E07_rep_A_Perhexiline_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125827497-1863155 04E07_rep_A_Perhexiline_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210110_AD_50.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD5_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1053.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2B06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150616829-1924498 2_E5_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150616829-1924498 2_E5_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/812.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ykgG_#1_P4C2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (ykgG_#1_P4C2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD2_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_11_AC+_20.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gadC_P5H12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (gadC_P5H12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151943829-1576676 Batch1_BT549_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/eno_P3D2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (eno_P3D2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111431973-1871488 10D08_rep_B_Chlorotrianiseneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111431973-1871488 10D08_rep_B_Chlorotrianiseneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223549687-1870190 01E04_rep_C_Betazole hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223549687-1870190 01E04_rep_C_Betazole hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD5_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153250941-1577312 Batch4_SW156_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122542528-1867476 05F10_rep_A_Nefazodone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122542528-1867476 05F10_rep_A_Nefazodone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151122947-1865124 02G03_rep_D_Dipyridamolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151122947-1865124 02G03_rep_D_Dipyridamolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sodB_P5B2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (sodB_P5B2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_17121406_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/613.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD6_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_21_male_2022_1017_Michael_neg-0.0045.mzML at line 689
Premature end of data in tag binary line 19465, line 19465, column 1096044 (4_21_male_2022_1017_Michael_neg-0.0045.mzML, line 19465)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153213072-1868497 06F01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153213072-1868497 06F01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113838118-1874705 11C11_rep_C_Ethaverine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113838118-1874705 11C11_rep_C_Ethaverine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Serratia_MADAA04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123231195-1867799 05F02_rep_B_Ketotifen_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123231195-1867799 05F02_rep_B_Ketotifen_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET41.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET41.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_1_B_rep_1_B-D5_1_5538.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A3_id_MSn_positive.mzML at line 21
index 389 is out of bounds for axis 0 with size 389
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153546461-1577455 Batch4_SKOV3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121550689-1879532 15C02_rep_A_Famciclovira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121550689-1879532 15C02_rep_A_Famciclovira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atoA_#1_P4E11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (atoA_#1_P4E11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092849642-1879034 14E07_rep_C_D-cycloserinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092849642-1879034 14E07_rep_C_D-cycloserinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1091.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G22_id.mzML at line 21
index 613 is out of bounds for axis 0 with size 613
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_sample08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/097_87.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_77.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092800499-1878995 14E11_rep_B_Homosalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092800499-1878995 14E11_rep_B_Homosalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111527150-1871530 10H11_rep_B_Amrinoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111527150-1871530 10H11_rep_B_Amrinoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_F4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample178.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_18072701_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165915897-2227579 PAT40.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152019586-1576704 Batch1_HCC1806_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control111_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control111_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_230.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_10_2022_1003_Michael_leming_liver_neg-0.0028.mzML at line 689
Premature end of data in tag binary line 24714, line 24714, column 1381102 (1_10_2022_1003_Michael_leming_liver_neg-0.0028.mzML, line 24714)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_0126_190128171349.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_167.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_10_blood_RESV_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_10_blood_RESV_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090213/ccms_peak/17March2022_002_QC Ventilago ext_pos 1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_71.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1842.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1842.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151230422-1576316 Batch5_NCIH2135_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case50_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case50_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C1_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150844300-1924625 2_D3_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150844300-1924625 2_D3_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153442925-1577403 Batch4_SW780_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123514376-1876137 08C03_rep_B_Camylofine_chlorhydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123514376-1876137 08C03_rep_B_Camylofine_chlorhydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201216_LKM_NoBeads_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113323980-1922390 1_B7_IZH2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113323980-1922390 1_B7_IZH2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/prpB_#2_P4G7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (prpB_#2_P4G7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD3_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1089.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_P_E3E3_C_02Feb18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009455_IBD200_E7_B6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_65.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153804415-1577570 Batch6_SF268_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/oxc_P3A5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (oxc_P3A5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112006359-1921736 2_C8_GAP1_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112006359-1921736 2_C8_GAP1_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case139_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case139_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151954581-1867927 05H09_rep_C_Oxantel_pamoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151954581-1867927 05H09_rep_C_Oxantel_pamoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample061.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GE5_01_12134.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person01_plasma_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person01_plasma_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GG9_01_17105.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130829707-1877655 13F10_rep_C_Tribenosidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130829707-1877655 13F10_rep_C_Tribenosidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cydA_#1_P4D9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (cydA_#1_P4D9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151016564-1865072 02D04_rep_D_Ciprofloxacin hydrochloride monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151016564-1865072 02D04_rep_D_Ciprofloxacin hydrochloride monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2L003A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_123.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/CORN_AD4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_G6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNT318_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_51.mzXML at line 689
Premature end of data in tag peaks line 19147, line 19151, column 3654 (20121114_51.mzXML, line 19151)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114237768-1922876 4_A10_STE2_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114237768-1922876 4_A10_STE2_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112510181-1922000 3_F4_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112510181-1922000 3_F4_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_E8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L21_id_MSn_positive.mzML at line 21
index 681 is out of bounds for axis 0 with size 681
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/COR2_20EV_RA1_01_22545.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124237157-1876490 08D07_rep_D_Fomepizolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124237157-1876490 08D07_rep_D_Fomepizolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E21_id_MSn_positive.mzML at line 21
index 394 is out of bounds for axis 0 with size 394
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130622291-1877553 13B02_rep_C_Remoxipride_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130622291-1877553 13B02_rep_C_Remoxipride_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201035534-1877749 09C10_rep_B_Zonisamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201035534-1877749 09C10_rep_B_Zonisamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122747956-1880081 15C09_rep_D_Cladribineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122747956-1880081 15C09_rep_D_Cladribineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ3_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100441021-1868988 06B07_rep_D_Bacampicillin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100441021-1868988 06B07_rep_D_Bacampicillin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_084b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_128.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_128.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152608183-1576983 Batch2_OVCAR4_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223434521-1870132 01G09_rep_B_Isoxsuprine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223434521-1870132 01G09_rep_B_Isoxsuprine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121749250-1867097 04B03_rep_C_Diphenidol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121749250-1867097 04B03_rep_C_Diphenidol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_58.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/QC_8_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130027463-1877278 13E06_rep_A_Apramycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130027463-1877278 13E06_rep_A_Apramycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152352859-1576873 Batch2_NCIH460_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223815624-1870302 01B04_rep_C_Hydroflumethiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223815624-1870302 01B04_rep_C_Hydroflumethiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_19_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_19_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD6_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tmk_P4D4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (tmk_P4D4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122612323-1867500 05C05_rep_A_Clorgyline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122612323-1867500 05C05_rep_A_Clorgyline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112454226-1874094 10H01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112454226-1874094 10H01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153625997-1577488 Batch4_184A1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_080b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/921.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113118199-1922281 1_A3_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113118199-1922281 1_A3_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-CCM-PA-QC-11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B15P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151716427-1576554 Batch7_SKMEL2_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153745199-1577554 Batch7_MIAPACA2_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/thdp_dapD_P3G8_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024911 (thdp_dapD_P3G8_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112509060-1921999 3_G9_GPR1_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112509060-1921999 3_G9_GPR1_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151126699-1576264 Batch5_PC9_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102022369-1869743 07C04_rep_D_Cetirizine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102022369-1869743 07C04_rep_D_Cetirizine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101234830-1869367 07H03_rep_B_Selegiline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101234830-1869367 07H03_rep_B_Selegiline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E9_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_107.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purF_P4C6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (purF_P4C6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210119_LKM_yeast_nBut_10to1_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD3_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122040249-1879753 15A06_rep_B_Fleroxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122040249-1879753 15A06_rep_B_Fleroxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MIXEE_20170207_070EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/52/ce49e4ed15e49e5e6c447dc19c7826/input_file/MIXEE_20170207_070EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpMat2_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153057498-1577221 Batch3_SCABER_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-019.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-019.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/073_71.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/005_Urea_Day2_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210108_AD_74.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223808920-2227643 PAT39.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample189_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_120_1A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2A02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case14_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case14_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180429_ES_H3K_batch3_repD_36.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/899-B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argE_P3D5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (argE_P3D5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_F9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12onlyDiluted_Replicate3_Level1_MSMS_pos.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C11_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113718942-1922594 3_E10_STE2_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113718942-1922594 3_E10_STE2_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/839.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151006336-1865064 02H03_rep_D_Chloroxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151006336-1865064 02H03_rep_D_Chloroxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122727371-1875765 08G04_rep_A_Pyridoxine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122727371-1875765 08G04_rep_A_Pyridoxine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHL08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152008201-1576695 Batch1_HCC1143_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125753612-1877161 13E09_rep_A_Gabexate_mesilatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125753612-1877161 13E09_rep_A_Gabexate_mesilatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cydD_#4_P3A12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (cydD_#4_P3A12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_G12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHH01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pdxH_P6A5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (pdxH_P6A5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201040785-1881747 16B07_rep_B_Tegafura.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201040785-1881747 16B07_rep_B_Tegafura.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysI_P3F4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (cysI_P3F4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113054339-1874372 11D05_rep_B_Novobiocin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113054339-1874372 11D05_rep_B_Novobiocin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201724602-1878048 09B05_rep_C_Benfotiaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201724602-1878048 09B05_rep_C_Benfotiaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122226565-1867317 04D07_rep_D_Bumetanideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122226565-1867317 04D07_rep_D_Bumetanideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K13_id_MSn_negative.mzML at line 21
index 309 is out of bounds for axis 0 with size 309
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ3_6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151619477-1576506 Batch7_MIAPACA2_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222805643-1869839 01D09_rep_A_Hexamethonium dibromide dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222805643-1869839 01D09_rep_A_Hexamethonium dibromide dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165802109-2227511 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_131_1A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/panB_P4C9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (panB_P4C9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114301808-1874918 12D04_rep_A_2-Aminobenzenesulfonamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114301808-1874918 12D04_rep_A_2-Aminobenzenesulfonamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlC3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraControlC3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H8_id_MSn_negative.mzML at line 21
index 359 is out of bounds for axis 0 with size 359
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153713857-1577528 Batch4_NCIH1666_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/133-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201304956-1877858 09D10_rep_B_Ibandronate_sodium_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201304956-1877858 09D10_rep_B_Ibandronate_sodium_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113100775-1874377 11A10_rep_B_Dichlorphenamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113100775-1874377 11A10_rep_B_Dichlorphenamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acrF_P4D3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (acrF_P4D3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123345478-1876065 08C05_rep_B_Yohimbine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123345478-1876065 08C05_rep_B_Yohimbine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_06_287_prot_40_IMS_11Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample114_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc2_T0_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/005_Urea_Day7_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113823044-1922650 3_E9_STE2_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113823044-1922650 3_E9_STE2_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200546607-1881530 16E09_rep_A_Homoveratrylamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200546607-1881530 16E09_rep_A_Homoveratrylamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2C01Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201557843-1881982 16E05_rep_C_Benzoxiquineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201557843-1881982 16E05_rep_C_Benzoxiquineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaH_#1_P6G6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (paaH_#1_P6G6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150834175-1924616 2_D11_RGT2_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150834175-1924616 2_D11_RGT2_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GA2_01_16902.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GB3_01_11902.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD5_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/001_Soil_WaterExtra_1_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092952288-1879084 14D02_rep_C_Imidureaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092952288-1879084 14D02_rep_C_Imidureaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_A6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201938569-1878150 09D05_rep_D_Nalidixic_acid_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201938569-1878150 09D05_rep_D_Nalidixic_acid_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/159-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112352195-1874044 10D10_rep_D_Methacholine_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112352195-1874044 10D10_rep_D_Methacholine_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR33h3aT2.mzML at line 689
Unescaped '<' not allowed in attributes values, line 27794, column 2406 (pBlateR33h3aT2.mzML, line 27794)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lptE_P3B8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (lptE_P3B8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_12_Liver_Ma_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 87 (Mouse_12_Liver_Ma_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102042894-1869760 07B10_rep_D_Propafenone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102042894-1869760 07B10_rep_D_Propafenone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223607925-1870204 01D08_rep_C_Pyrimethamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223607925-1870204 01D08_rep_C_Pyrimethamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B15Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_5_P_rep_4_B-A5_1_5824.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150442483-1924417 1_H4_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150442483-1924417 1_H4_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114951679-1875242 12A11_rep_B_Esmolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114951679-1875242 12A11_rep_B_Esmolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_161.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190119_ES_H3K_batch14_repC_209.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30249 - GI-19-001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112517045-1874112 10B04_rep_D_Metoprolol-(+,-)_(+)-tartrate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112517045-1874112 10B04_rep_D_Metoprolol-(+,-)_(+)-tartrate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_CABIN_sample10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lysU_P3B2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (lysU_P3B2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNY228_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125800916-1863133 04B09_rep_A_Antazoline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125800916-1863133 04B09_rep_A_Antazoline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152003170-1576691 Batch1_HCC1806_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_C6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_E4_id_negative.mzML at line 21
index 313 is out of bounds for axis 0 with size 313
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d8_287_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 53271, column 1 (SysVirol_IFT001_Cal04RG_d8_287_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 53271)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/galU_P3G10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (galU_P3G10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153359892-1577368 Batch4_NCIH1793_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/Blank7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_CABIN_sample09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210313_LKM_mb_rapid_beads_40min_4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_11P_A8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD3_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123824900-1876288 08F02_rep_C_Loracarbefa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123824900-1876288 08F02_rep_C_Loracarbefa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoJ_#1_P4F2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (nuoJ_#1_P4F2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114537661-1875042 12H01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114537661-1875042 12H01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201121417-1881777 16G10_rep_B_Oxymetholonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201121417-1881777 16G10_rep_B_Oxymetholonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narW_P3D1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (narW_P3D1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170209_069ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/43/c87f31ddc2ef4ac46586bc86438ca2/input_file/MMW6_20170209_069ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD1_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_D6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152409396-1576886 Batch2_NCIH2172_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD3_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H12_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152020859-1576705 Batch1_HCC1806_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095328/peak/MS_RAW_data/230811_BBT301_TPP_HighPH_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/004_Soil_WaterIntra_2_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170125_053EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/9d/ee2b4c799f88d8baf259bb6c10bc24/input_file/SH7_20170125_053EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151151335-1924786 3_E9_SNF3_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151151335-1924786 3_E9_SNF3_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_16_NOR_47.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_16_NOR_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153104786-1868444 06G09_rep_B_Neostigmine_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153104786-1868444 06G09_rep_B_Neostigmine_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person26_blood_elder_POS.mzXML at line 689
attributes construct error, line 41, column 83 (Person26_blood_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078960/ccms_peak/SoceGT47-Pmix_SPL-P124-6+5_RA4_01_20443.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_75.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murG_#3_P5D8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (murG_#3_P5D8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092116419-1878680 14E09_rep_A_(+,-)-Synephrinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092116419-1878680 14E09_rep_A_(+,-)-Synephrinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100622260-1869069 07D04_rep_A_Norcyclobenzaprinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100622260-1869069 07D04_rep_A_Norcyclobenzaprinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111407749-1871469 10G01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111407749-1871469 10G01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_107.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample080_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172713480-1889925 Nb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152106626-1576741 Batch1_HCC38_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201007022-1877728 09E09_rep_B_Estropipatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201007022-1877728 09E09_rep_B_Estropipatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_B9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_B9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_124.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 Column1_test_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/434.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1A03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_E12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Pool_9_B-A2_1_5664.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112719416-1922113 4_C7_GPR1_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112719416-1922113 4_C7_GPR1_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200958862-1881716 16G02_rep_B_Epirubicin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200958862-1881716 16G02_rep_B_Epirubicin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case217_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case217_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153532094-1577443 Batch4_977_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_121b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K9_id_MSn_positive.mzML at line 21
index 556 is out of bounds for axis 0 with size 556
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I14_id.mzML at line 21
index 532 is out of bounds for axis 0 with size 532
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007490_031618-Unst2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223036478-1869952 01B03_rep_A_Benzonatateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223036478-1869952 01B03_rep_A_Benzonatateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/asnA_P3E8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024911 (asnA_P3E8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202025871-1882189 16C07_rep_D_Avobenzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202025871-1882189 16C07_rep_D_Avobenzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125311019-1862896 03C07_rep_C_Cloxacillin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125311019-1862896 03C07_rep_C_Cloxacillin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.cat_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122726179-1880064 15C06_rep_D_Celecoxiba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122726179-1880064 15C06_rep_D_Celecoxiba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GC7_01_11662.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123929172-1876340 08A04_rep_D_Pyridostigmine_iodidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123929172-1876340 08A04_rep_D_Pyridostigmine_iodidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153413960-1868592 06E05_rep_B_Oxcarbazepinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153413960-1868592 06E05_rep_B_Oxcarbazepinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sodC_P3H3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (sodC_P3H3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/blank_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/CORN_AAW1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfF_P3D4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (hyfF_P3D4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152046086-1576725 Batch1_HCC1937_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B17_id_MSn_negative.mzML at line 21
index 291 is out of bounds for axis 0 with size 291
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1059.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw5_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/2mecdp_ispG_P5A2_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (2mecdp_ispG_P5A2_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1366.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1366.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124921373-1862712 03G11_rep_B_Phentolamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124921373-1862712 03G11_rep_B_Phentolamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125513754-1862996 03G06_rep_D_Nifenazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125513754-1862996 03G06_rep_D_Nifenazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152204619-1576787 Batch2_NCIH2172_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD4_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/452.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170125_045EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/8a/d559ef81dbdd083fbd7fca2e678930/input_file/MMW6_20170125_045EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151621258-1925012 4_D1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151621258-1925012 4_D1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_335.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wcaJ_P4A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (wcaJ_P4A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091939894-1878606 13G08_rep_D_Tocainide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091939894-1878606 13G08_rep_D_Tocainide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/N-methylnicotinate.mzXML at line 689
Premature end of data in tag peaks line 15007, line 15011, column 28135 (N-methylnicotinate.mzXML, line 15011)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD5_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_11P_A4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/23_D24062013T2237_1399CBU_0020_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113223544-1874442 11F07_rep_B_Tolmetin_sodium_salt_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113223544-1874442 11F07_rep_B_Tolmetin_sodium_salt_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/108.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_05_leg_skin_RESV_oral_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_05_leg_skin_RESV_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GB2_01_16791.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aas_P3B7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (aas_P3B7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GF9_01_11711.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M6_id_MSn_negative.mzML at line 21
index 321 is out of bounds for axis 0 with size 321
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/539-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_17121408_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201402510-1881898 16E08_rep_B_Pregabalinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201402510-1881898 16E08_rep_B_Pregabalinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202454891-1878399 10A08_rep_A_Liranaftateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202454891-1878399 10A08_rep_A_Liranaftateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/-ve_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201152006-1881800 16H02_rep_B_Cisatracurium_besylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201152006-1881800 16H02_rep_B_Cisatracurium_besylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/370.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_E8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121735941-1879613 15D01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121735941-1879613 15D01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pabC_P4H4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (pabC_P4H4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I19_id_negative.mzML at line 21
index 263 is out of bounds for axis 0 with size 263
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/202.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152213642-1868038 05E08_rep_D_Benfluorexa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152213642-1868038 05E08_rep_D_Benfluorexa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150854923-1924634 2_E4_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150854923-1924634 2_E4_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152208438-1576790 Batch2_NCIH522_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122824647-1880110 15G05_rep_D_Olmesartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122824647-1880110 15G05_rep_D_Olmesartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007640_032118-0.01Thr4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210328_AD_33.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085693/ccms_peak/MRM-validation cohort/BC MRM 11th batch.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_53.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/486-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GH8_01_11756.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw4_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/849.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091923336-1878593 13C04_rep_D_Dimaprit_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091923336-1878593 13C04_rep_D_Dimaprit_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_B10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_B10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6G04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlich1001R37_5h2a.mzML at line 689
Specification mandates value for attribute gT, line 268694, column 60 (pBlich1001R37_5h2a.mzML, line 268694)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_293_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153430541-1577393 Batch4_NCIH1869_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092828768-1879017 14D04_rep_B_Bethanechol_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092828768-1879017 14D04_rep_B_Bethanechol_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087689/ccms_peak/Hela_bulk/OR11_20160122_PG_HeLa_CVB3_CT_B.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample159_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hA1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hA1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202001793-1882170 16D05_rep_D_Perospironeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202001793-1882170 16D05_rep_D_Perospironeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A1Pa10mm_black_P1-B-2_01_23066.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S101.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S101.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw5_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102134434-1869802 07C08_rep_D_Sibutramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102134434-1869802 07C08_rep_D_Sibutramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D18_id_MSn_positive.mzML at line 21
index 605 is out of bounds for axis 0 with size 605
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130749185-1877622 13C06_rep_C_Guaiacolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130749185-1877622 13C06_rep_C_Guaiacolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153618854-1577482 Batch4_977_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_RBC_24h_NEG.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer2_RBC_24h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151805496-1576594 Batch3_PANC1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_91.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112901668-1874290 11A02_rep_A_Carbinoxamine_maleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112901668-1874290 11A02_rep_A_Carbinoxamine_maleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D5_id_MSn_negative.mzML at line 21
index 301 is out of bounds for axis 0 with size 301
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153352713-1577362 Batch4_NCIH1869_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nikC_P3A3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (nikC_P3A3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114611263-1875067 12F08_rep_A_Dehydroisoandosterone_3-acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114611263-1875067 12F08_rep_A_Dehydroisoandosterone_3-acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092221/ccms_peak/LuxWater_2019-2022/2019/Sep/201910_SW_5875_neg.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180412_ES_H3K_batch7_repB_73.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123004541-1867686 05D05_rep_B_Clopamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123004541-1867686 05D05_rep_B_Clopamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_C12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_CABIN_sample03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C12_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_E9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A4_id_MSn_negative_20240503175313.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/241.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122547509-1867480 05D07_rep_A_Adenosine_5'-monophosphate_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122547509-1867480 05D07_rep_A_Adenosine_5'-monophosphate_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111940655-1921714 2_B9_GAP1_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111940655-1921714 2_B9_GAP1_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C9_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130712632-1877593 13F01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130712632-1877593 13F01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O15_id_MSn_positive.mzML at line 21
index 400 is out of bounds for axis 0 with size 400
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101025806-1869264 07B10_rep_B_Propafenone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101025806-1869264 07B10_rep_B_Propafenone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D3_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172726599-1889934 blanka.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemG_#1_P5B4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (hemG_#1_P5B4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222916089-1869892 01F03_rep_A_Carbamazepineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222916089-1869892 01F03_rep_A_Carbamazepineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223442291-1870138 01B01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223442291-1870138 01B01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fsaB_P3H11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (fsaB_P3H11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123454216-1876121 08F01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123454216-1876121 08F01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200944973-1877712 09B03_rep_B_Picrotoxinina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200944973-1877712 09B03_rep_B_Picrotoxinina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111851329-1872074 10B11_rep_C_Ebselena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111851329-1872074 10B11_rep_C_Ebselena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152603432-1576979 Batch2_BXPC3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GH1_01_17111.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/R48_I_ESI-.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_C7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/481-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR13h1a.mzML at line 689
Opening and ending tag mismatch: binary line 52480 and scan, line 52489, column 20 (pBlateR13h1a.mzML, line 52489)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202532960-1878429 10G03_rep_A_Podophyllotoxinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202532960-1878429 10G03_rep_A_Podophyllotoxinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190111_ES_H3K_batch12_repC_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET86.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET86.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082504/ccms_peak/N. synne._normal condition_10V_2/141_12min_10V2.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000082504/ccms_peak/N. synne._normal condition_10V_2/141_12min_10V2.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165751361-2227501 PAT40.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101851365-1869669 07E05_rep_D_Tiabendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101851365-1869669 07E05_rep_D_Tiabendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpK_P5A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (glpK_P5A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151501516-1576442 Batch7_NCIH1734_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murQ_P4G2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (murQ_P4G2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_132b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ubiI_#1_P5H7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (ubiI_#1_P5H7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121525068-1866984 04G02_rep_B_Lisinoprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121525068-1866984 04G02_rep_B_Lisinoprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092300/peak/Mice/EXP02/Cecal/EXP02_Cecal_MB_01.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000092300/peak/Mice/EXP02/Cecal/EXP02_Cecal_MB_01.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/259.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD4_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person20_blood_youth_POS.mzXML at line 689
attributes construct error, line 41, column 83 (Person20_blood_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_B3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223807884-1870296 01F01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223807884-1870296 01F01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151136950-1576272 Batch5_PC14PE6_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person16_plasma_youth_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person16_plasma_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_G12_id_negative.mzML at line 21
index 301 is out of bounds for axis 0 with size 301
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_18111330_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A1_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113711041-1874635 11G02_rep_C_Gabapentinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113711041-1874635 11G02_rep_C_Gabapentinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113821953-1922649 3_F2_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113821953-1922649 3_F2_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/268.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HaCaT_2_RESV_20uM_POS.mzXML at line 689
attributes construct error, line 38, column 82 (HaCaT_2_RESV_20uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/nicotinamide.mzXML at line 689
Premature end of data in tag peaks line 18447, line 18451, column 81390 (nicotinamide.mzXML, line 18451)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_CABIN_sample01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6A05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_plasma_0h_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer1_plasma_0h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121735172-1867086 04H08_rep_C_Guanethidine_sulfate_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121735172-1867086 04H08_rep_C_Guanethidine_sulfate_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114333740-1922926 4_H11_STE2_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114333740-1922926 4_H11_STE2_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M19_id_MSn_negative.mzML at line 21
index 334 is out of bounds for axis 0 with size 334
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130752984-1877625 13G07_rep_C_Arbutina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130752984-1877625 13G07_rep_C_Arbutina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B5_id_MSn_negative_20240503192510.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152515562-1868176 05B02_rep_D_Tremorine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152515562-1868176 05B02_rep_D_Tremorine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123243643-1867809 05C06_rep_B_Clenbuterol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123243643-1867809 05C06_rep_B_Clenbuterol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_G3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_CABIN_sample05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Negative_Veh_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121450441-1879488 15E09_rep_A_Clarithromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121450441-1879488 15E09_rep_A_Clarithromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_060EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/95/4105dcc8b2db99d74724baeb77ad02/input_file/QC_20170207_060EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GD11_01_17188.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/111-4_idMsMs_25min_20eV_GE4_01_4250.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125319748-1876951 12D09_rep_D_Nimodipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125319748-1876951 12D09_rep_D_Nimodipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130655032-1877579 13C04_rep_C_Dimaprit_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130655032-1877579 13C04_rep_C_Dimaprit_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121725865-1867079 04H03_rep_C_Flunarizine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121725865-1867079 04H03_rep_C_Flunarizine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088378/raw/Gam1BOL080513_B_DDA2.mzXML at line 689
Invalid character: Char 0x0 out of allowed range
, line 12740, column 21669 (Gam1BOL080513_B_DDA2.mzXML, line 12740)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100813531-1869159 07G01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100813531-1869159 07G01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101402181-1869437 07C07_rep_C_Sisomicin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101402181-1869437 07C07_rep_C_Sisomicin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100451175-1868996 06A01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100451175-1868996 06A01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201025958-1877742 09B02_rep_B_Glimepiridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201025958-1877742 09B02_rep_B_Glimepiridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089598/ccms_peak/210723_WSV_QE_C18_MS1_POSNEG_Synergy_SynMod05_AllDilutions_CalCurve/M15C.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/933.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201917850-1878134 09H09_rep_D_Fluorometholonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201917850-1878134 09H09_rep_D_Fluorometholonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F7_id_MSn_positive.mzML at line 21
index 488 is out of bounds for axis 0 with size 488
Error processing file: /data/datasets/server/MassIVE/MSV000085488/updates/2020-06-18_viqqikurnianda_b7ec00f4/raw/RYK-GNPS-References/200618_2-isothioneopupukaenane.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_CABIN_sample04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R13h3a.mzML at line 689
Opening and ending tag mismatch: binary line 158974 and scanWindow, line 158975, column 30 (pBlichMO17R13h3a.mzML, line 158975)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS305Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_18092931_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123810923-1876277 08H05_rep_C_Tomoxetine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123810923-1876277 08H05_rep_C_Tomoxetine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H17_id_MSn_negative.mzML at line 21
index 333 is out of bounds for axis 0 with size 333
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yihX_P5E4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (yihX_P5E4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_3_Blood_HO_control_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_3_Blood_HO_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151505171-1576445 Batch6_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112111806-1921792 2_D3_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112111806-1921792 2_D3_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223024675-1869943 01D07_rep_A_Troleandomycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223024675-1869943 01D07_rep_A_Troleandomycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG13.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GE3_01_11513.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417220705.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151338736-1576373 Batch6_SR8714_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152221178-1576800 Batch2_NCIH441_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D15_id_MSn_positive.mzML at line 21
index 430 is out of bounds for axis 0 with size 430
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/008_1217_2_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124851499-1862688 03D08_rep_B_Metaraminol_bitartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124851499-1862688 03D08_rep_B_Metaraminol_bitartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201054716-1877763 09D02_rep_B_Dydrogesteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201054716-1877763 09D02_rep_B_Dydrogesteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123807163-1876274 08A04_rep_C_Pyridostigmine_iodidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123807163-1876274 08A04_rep_C_Pyridostigmine_iodidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152107113-1867986 05G01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152107113-1867986 05G01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123740672-1876253 08C01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123740672-1876253 08C01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151748548-1576580 Batch3_PANC1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Blank_pesticide_170405141018.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092136986-1878696 14C07_rep_A_Methantheline_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092136986-1878696 14C07_rep_A_Methantheline_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cdsA_P4F1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (cdsA_P4F1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V6_LH_PSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151600373-1924994 4_D4_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151600373-1924994 4_D4_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES382.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152211010-1576792 Batch2_NCIH441_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_E3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2A05P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153943620-1577654 Batch6_NCIH146_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control164_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control164_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153459277-1868628 06A06_rep_C_Pepstatin_Aa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153459277-1868628 06A06_rep_C_Pepstatin_Aa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1065.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD1_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.alb_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007682_032118-1CRP6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/861.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemN_#3_P3E9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (hemN_#3_P3E9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E20_id_MSn_positive.mzML at line 21
index 437 is out of bounds for axis 0 with size 437
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_MEDIA-BLANK_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091803464-1878529 13C05_rep_D_Oxfendazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091803464-1878529 13C05_rep_D_Oxfendazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_P6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GH11_01_17004.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/grxC_#1_P3A3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (grxC_#1_P3A3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113102101-1874378 11B10_rep_B_Moxalactam_disodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113102101-1874378 11B10_rep_B_Moxalactam_disodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C1_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101309691-1869395 07B03_rep_B_Nitrofurala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101309691-1869395 07B03_rep_B_Nitrofurala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ddpC_P4G11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ddpC_P4G11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kefC_P4C1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (kefC_P4C1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130148458-1877339 13C02_rep_B_Nitrocaramiphen_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130148458-1877339 13C02_rep_B_Nitrocaramiphen_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD6_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD6_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD3_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121337961-1879433 15D08_rep_A_Olopatadine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121337961-1879433 15D08_rep_A_Olopatadine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_aqueous_longstudy_230215_174.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_115a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_185.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GB1_01_17023.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123154112-1867769 05C11_rep_B_Clozapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123154112-1867769 05C11_rep_B_Clozapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200759769-1881628 16C09_rep_A_Actaritb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200759769-1881628 16C09_rep_A_Actaritb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/6-methoxyquinoline.mzXML at line 689
Premature end of data in tag peaks line 4967, line 4971, column 3562 (6-methoxyquinoline.mzXML, line 4971)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201009537-1881724 16D04_rep_B_Benidipine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201009537-1881724 16D04_rep_B_Benidipine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122055975-1879765 15F03_rep_B_Atorvastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122055975-1879765 15F03_rep_B_Atorvastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00077324.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_C6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112943301-1922204 1_D9_IZH2_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112943301-1922204 1_D9_IZH2_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_149.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_149.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101030826-1869268 07E09_rep_B_Triflusalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101030826-1869268 07E09_rep_B_Triflusalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092320718-1878778 14E01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092320718-1878778 14E01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/csdA_P3D6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (csdA_P3D6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpBud1_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202124999-1878233 09F01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202124999-1878233 09F01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/grcA_P3E7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (grcA_P3E7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114409758-1922958 4_G1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114409758-1922958 4_G1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125338197-1862918 03G02_rep_D_Norfloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125338197-1862918 03G02_rep_D_Norfloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_G9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170127_026ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b3/986c5ebde0f2a4876a7457335062ad/input_file/SH8_20170127_026ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1098.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB1H05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N21_id_MSn_negative.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151005051-1865063 02E10_rep_D_Pirenzepine dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151005051-1865063 02E10_rep_D_Pirenzepine dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_E9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094943/raw/MS2/Blank_MeOH_1-r001.mzML at line 689
Premature end of data in tag indexedmzML line 2, line 47489, column 1 (Blank_MeOH_1-r001.mzML, line 47489)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control245_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control245_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_131_2A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125727326-1863105 03D03_rep_D_Thalidomideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125727326-1863105 03D03_rep_D_Thalidomideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124155210-1876456 08B07_rep_D_Acetopromazine_maleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124155210-1876456 08B07_rep_D_Acetopromazine_maleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR07/withoutKBr/140311BAnoKBr.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Kocuria_rosea_MSL_359.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153653588-1577511 Batch4_RT4_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092707339-1878954 14G07_rep_B_Meropenema.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092707339-1878954 14G07_rep_B_Meropenema.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/HFS_vehicle_T4_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080705/ccms_peak/RAW/12h_lysC_BA.mzML at line 648
Multiple activations for a single precursor is not yet implemented. 
                                                         File: input_file/12h_lysC_BA.mzML 
                                                         Scan: 2008
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_B6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_B6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165750224-2227500 PAT39.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_4_B_rep_3_B-D1_1_5534.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_G5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ3_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083383/raw/raw/S_YBT-2_Zn.mzML at line 689
Premature end of data in tag index line 348485, line 348486, column 1 (S_YBT-2_Zn.mzML, line 348486)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112618858-1874161 11F01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112618858-1874161 11F01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1085.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD2_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Mycolicibacterium_sp_LYG016B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092628079-1878924 14D10_rep_B_Methicillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092628079-1878924 14D10_rep_B_Methicillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170125_045EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/47/813554a579a5776cc0aacabf8b8fb3/input_file/MMW6_20170125_045EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201800686-1882075 16E06_rep_C_Phenothiazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201800686-1882075 16E06_rep_C_Phenothiazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145645740-1863959 02C02_rep_A_R(-) Apomorphine hydrochloride hemihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145645740-1863959 02C02_rep_A_R(-) Apomorphine hydrochloride hemihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_69.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/241.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D5_id_MSn_positive.mzML at line 21
index 432 is out of bounds for axis 0 with size 432
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153508652-1577424 Batch4_NCIH1563_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_17_AC+_47.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102040555-1869758 07B09_rep_D_Artemisininb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102040555-1869758 07B09_rep_D_Artemisininb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_C4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD6_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F3_id_MSn_positive.mzML at line 21
index 429 is out of bounds for axis 0 with size 429
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125138140-1862821 03G08_rep_C_Clemizole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125138140-1862821 03G08_rep_C_Clemizole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B05Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N4.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100347865-1868946 06E11_rep_D_Dicloxacillin_sodium_salt_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100347865-1868946 06E11_rep_D_Dicloxacillin_sodium_salt_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample222_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/546-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E4_id_MSn_positive.mzML at line 21
index 495 is out of bounds for axis 0 with size 495
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F14_id_MSn_positive.mzML at line 21
index 694 is out of bounds for axis 0 with size 694
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_119.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_119.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121918151-1867167 04A06_rep_C_Dropropizine_(R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121918151-1867167 04A06_rep_C_Dropropizine_(R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_67.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092247216-1878752 14G01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092247216-1878752 14G01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cmk_P3B6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (cmk_P3B6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_52_AC+_25.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000081118/ccms_peak/Beers19_ms2ldaPLUS/NEGmode/Beer_multibeers_9_fullscan3.mzXML at line 689
Premature end of data in tag peaks line 32623, line 32627, column 15803 (Beer_multibeers_9_fullscan3.mzXML, line 32627)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125707467-1863088 03D01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125707467-1863088 03D01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_19_CNR_48.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_19_CNR_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_49.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112352645-1921932 3_H2_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112352645-1921932 3_H2_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_56_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_56_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/465-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121839920-1867137 04G05_rep_C_Econazole_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121839920-1867137 04G05_rep_C_Econazole_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112436898-1874080 10B09_rep_D_Folinic_acid_calcium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112436898-1874080 10B09_rep_D_Folinic_acid_calcium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample023.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1320.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1320.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2B07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223837350-2227668 PAT46.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argB_#4_P5D2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (argB_#4_P5D2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094443/raw/All Egg Mass/1A5A_MSMS.mzML at line 689
Premature end of data in tag binary line 44089, line 44089, column 438218 (1A5A_MSMS.mzML, line 44089)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C4_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES76.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12only_Replicate2_Level1_MSMS_pos.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125047978-1862781 03D11_rep_C_Camptothecine_(S,+)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125047978-1862781 03D11_rep_C_Camptothecine_(S,+)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151919654-1867899 05E10_rep_C_Meloxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151919654-1867899 05E10_rep_C_Meloxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/955.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113426181-1922445 2_E8_IZH2_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113426181-1922445 2_E8_IZH2_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_109.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_109.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frlD_#2_P5B2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (frlD_#2_P5B2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093054306-1879128 14H06_rep_C_Ronidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093054306-1879128 14H06_rep_C_Ronidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165803040-2227512 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlB1a.mzXML at line 689
expected '>', line 718, column 11 (ExtraControlB1a.mzXML, line 718)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083177.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fhuF_P3E2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (fhuF_P3E2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD1_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123357659-1876075 08E02_rep_B_Tranilastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123357659-1876075 08E02_rep_B_Tranilastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124806109-1862652 03C04_rep_B_Pargyline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124806109-1862652 03C04_rep_B_Pargyline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample163_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNH287_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122222889-1867314 04B10_rep_D_Ethacrynic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122222889-1867314 04B10_rep_D_Ethacrynic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yehW_P4G11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (yehW_P4G11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C12_id_MSn_positive.mzML at line 21
index 668 is out of bounds for axis 0 with size 668
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_19032111_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223606547-1870203 01D08_rep_C_Pyrimethaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223606547-1870203 01D08_rep_C_Pyrimethaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hC3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hC3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086056/ccms_peak/qqq_Pathway_UGT_D_2_1.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000086056/ccms_peak/qqq_Pathway_UGT_D_2_1.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ftsW_#2_P4B4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (ftsW_#2_P4B4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170207_017EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/24/28cb32f1eb35a32c5096fde8af96ce/input_file/MMW5_20170207_017EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1219.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1219.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122930138-1875861 08E06_rep_A_Carbadoxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122930138-1875861 08E06_rep_A_Carbadoxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ribA_P4F6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ribA_P4F6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GF1_01_17083.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_399.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113500499-1874531 11H05_rep_C_Theobromineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113500499-1874531 11H05_rep_C_Theobromineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_10_dorsal_skin_RESV_skin_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_10_dorsal_skin_RESV_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113945678-1922723 3_D4_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113945678-1922723 3_D4_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pck_P3B8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (pck_P3B8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123339377-1876060 08E10_rep_B_Ipsapironea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123339377-1876060 08E10_rep_B_Ipsapironea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125103071-1862793 03H09_rep_C_Lomefloxacin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125103071-1862793 03H09_rep_C_Lomefloxacin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153748851-1577557 Batch6_HCC1806_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/Blank1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124906384-1876761 12F09_rep_C_Benserazide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124906384-1876761 12F09_rep_C_Benserazide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_98.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113851808-1922675 3_E1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113851808-1922675 3_E1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152029949-1867956 05D01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152029949-1867956 05D01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpB_P5A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (glpB_P5A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD2_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_2_RESV_0uM_POS.mzXML at line 689
attributes construct error, line 38, column 81 (HepG2_2_RESV_0uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E9_id_MSn_positive.mzML at line 21
index 457 is out of bounds for axis 0 with size 457
Error processing file: /data/datasets/server/MassIVE/MSV000090213/raw/9March2022_025_VH WD Trang 10x_neg 2.mzML at line 689
attributes construct error, line 9217419, column 53 (9March2022_025_VH WD Trang 10x_neg 2.mzML, line 9217419)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H22_id_MSn_negative.mzML at line 21
index 351 is out of bounds for axis 0 with size 351
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemA_#4_P5H8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (hemA_#4_P5H8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112845143-1922190 4_E7_GPR1_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112845143-1922190 4_E7_GPR1_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152557268-1576974 Batch3_MDAMB157_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100633342-1869078 07A05_rep_A_Benperidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100633342-1869078 07A05_rep_A_Benperidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153009787-1577186 Batch3_PANC0403_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092709866-1878956 14F07_rep_B_Estriola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092709866-1878956 14F07_rep_B_Estriola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100158392-1868860 06A06_rep_D_Pepstatin_Ab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100158392-1868860 06A06_rep_D_Pepstatin_Ab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085480/raw/190627_Irina_OMZ_ETNP18_RerunFractions/mzML/ETNP18_SecChla_6_C.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (ETNP18_SecChla_6_C.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0012_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0012_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/13_D24062013T1748_1399CBU_0010_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151247195-1576330 Batch5_NCIH345_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYH002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_C4_id_negative.mzML at line 21
index 259 is out of bounds for axis 0 with size 259
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xdhA_P3G9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (xdhA_P3G9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092135663-1878695 14D11_rep_A_Methiazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092135663-1878695 14D11_rep_A_Methiazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ugpB_P3A4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (ugpB_P3A4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_124.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_17111316_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_G6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/BeautyProducts_Vol4/BP8_01_17306.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/959.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_A3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/990.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201048770-1881753 16E03_rep_B_Anagrelidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201048770-1881753 16E03_rep_B_Anagrelidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153308023-1577326 Batch4_NCIH2009_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pyrD_P4G9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (pyrD_P4G9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample140.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200815866-1881640 16C05_rep_A_Nitazoxanideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200815866-1881640 16C05_rep_A_Nitazoxanideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123352720-1876071 08C11_rep_B_Etretinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123352720-1876071 08C11_rep_B_Etretinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125531024-1877051 12D04_rep_D_2-Aminobenzenesulfonamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125531024-1877051 12D04_rep_D_2-Aminobenzenesulfonamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw_Baseline_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_G4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_G4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112305921-1921891 3_F5_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112305921-1921891 3_F5_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_19071524_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD1_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD6_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O6_id_MSn_positive.mzML at line 21
index 553 is out of bounds for axis 0 with size 553
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151814938-1576602 Batch3_PANC1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD4_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007674_032118-1CRP2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200715335-1881596 16H06_rep_A_Valsartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200715335-1881596 16H06_rep_A_Valsartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1E13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIAJ12.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_C6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224020427-1870398 01C07_rep_D_Cimetidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224020427-1870398 01C07_rep_D_Cimetidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122456979-1867439 04F04_rep_D_Glafenine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122456979-1867439 04F04_rep_D_Glafenine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_85.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_85.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD3_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gsiA_#1_P3E10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (gsiA_#1_P3E10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-112_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152017789-1867946 05E05_rep_C_Metergolinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152017789-1867946 05E05_rep_C_Metergolinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112314417-1873629 10A07_rep_D_Mephentermine_hemisulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112314417-1873629 10A07_rep_D_Mephentermine_hemisulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201542956-1877972 09E06_rep_C_Ibutilide_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201542956-1877972 09E06_rep_C_Ibutilide_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH52.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150808508-1924594 2_G5_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150808508-1924594 2_G5_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090870/peak/Hericium/POS/P8_pos.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151419775-1924914 4_B11_SNF3_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151419775-1924914 4_B11_SNF3_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113418030-1922438 2_A4_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113418030-1922438 2_A4_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C7_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007699_032218-5CRP4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101319692-1869403 07H09_rep_B_Gliclazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101319692-1869403 07H09_rep_B_Gliclazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153523370-1577436 Batch5_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GF10_01_11712.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121520425-1879509 15E05_rep_A_Ethinylestradiolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121520425-1879509 15E05_rep_A_Ethinylestradiolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092240919-1878747 14H10_rep_A_Clocortolone_pivalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092240919-1878747 14H10_rep_A_Clocortolone_pivalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Sphingomonas_MSA21.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201323580-1881869 16B06_rep_B_Pantoprazole_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201323580-1881869 16B06_rep_B_Pantoprazole_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152841904-1577112 Batch3_NCIH322M_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GC6_01_12101.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/046_50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30158 - GI-17-537.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ssuD_P4G6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (ssuD_P4G6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172729177-1889936 Na.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223952671-1870377 01C10_rep_C_Antipyrinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223952671-1870377 01C10_rep_C_Antipyrinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_19080521_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample191.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190326544-1889791 stdb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124202724-1876462 08F02_rep_D_Loracarbefa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124202724-1876462 08F02_rep_D_Loracarbefa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/19.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124609301-1876658 09D10_rep_A_Ibandronate_sodium_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124609301-1876658 09D10_rep_A_Ibandronate_sodium_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ4_7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_66.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_66.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153756081-1577563 Batch6_SF268_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180831_ES_H3K_batch11_repC_162.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125610785-1863042 03F05_rep_D_Gemfibrozila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125610785-1863042 03F05_rep_D_Gemfibrozila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150101812-1864163 02G10_rep_B_Thioproperazine dimesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150101812-1864163 02G10_rep_B_Thioproperazine dimesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152935925-1577158 Batch3_T24_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092920/ccms_peak/Raw data Root and Leave Jatropha /BL-1_TPA_1.mzML at line 689
Premature end of data in tag spectrumList line 73, line 53637, column 1 (BL-1_TPA_1.mzML, line 53637)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111753973-1872029 10A07_rep_C_Mephentermine_hemisulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111753973-1872029 10A07_rep_C_Mephentermine_hemisulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124239658-1876492 08B08_rep_D_Escitalopram_oxalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124239658-1876492 08B08_rep_D_Escitalopram_oxalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090549/updates/2023-02-07_bsedio_eb5d1a0f/peak/Madidi_mzXML/MDP0398.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224156265-1870472 01C05_rep_D_Norethynodrelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224156265-1870472 01C05_rep_D_Norethynodrelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD1_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_B5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222831085-1869858 01C09_rep_A_Ethambutol dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222831085-1869858 01C09_rep_A_Ethambutol dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_QC_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_23_Liver_EtOH_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_23_Liver_EtOH_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112544603-1922030 4_B3_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112544603-1922030 4_B3_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_18111330_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H7_id.mzML at line 21
index 586 is out of bounds for axis 0 with size 586
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD2_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153501716-1868630 06G08_rep_C_Rifapentinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153501716-1868630 06G08_rep_C_Rifapentinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224138599-1870458 01C10_rep_D_Antipyrineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224138599-1870458 01C10_rep_D_Antipyrineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0034_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/LiLi-2d.mzXML at line 689
Premature end of data in tag peaks line 1670, line 1674, column 3576 (LiLi-2d.mzXML, line 1674)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114554228-1875054 12C10_rep_A_Nabumetonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114554228-1875054 12C10_rep_A_Nabumetonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B3_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151722355-1576559 Batch3_J82_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A3_black_P1-A-7_01_22958.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/886.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153614018-1577478 Batch5_NCIH1792_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007535_031618-1Thr4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092734260-1878975 14D06_rep_B_(R)-Propranolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092734260-1878975 14D06_rep_B_(R)-Propranolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152627343-1576999 Batch2_NCIH647_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125928033-1877234 13B04_rep_A_Pirlindole_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125928033-1877234 13B04_rep_A_Pirlindole_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091859163-1878574 13E05_rep_D_Meptazinol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091859163-1878574 13E05_rep_D_Meptazinol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152553644-1576971 Batch2A_NCIH647_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200734279-1881610 16A10_rep_A_Ubenimexb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200734279-1881610 16A10_rep_A_Ubenimexb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2A09Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223749228-2227626 PAT36.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152248745-1576822 Batch2_NCIH2122_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100608694-1869058 07C07_rep_A_Sisomicin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100608694-1869058 07C07_rep_A_Sisomicin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_E8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201053361-1877762 09D02_rep_B_Dydrogesteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201053361-1877762 09D02_rep_B_Dydrogesteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151058733-1865105 02D10_rep_D_Picotamide monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151058733-1865105 02D10_rep_D_Picotamide monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151905853-1867888 05E03_rep_C_Betamethasonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151905853-1867888 05E03_rep_C_Betamethasonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123653823-1876216 08B11_rep_C_Argatrobana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123653823-1876216 08B11_rep_C_Argatrobana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202012883-1882179 16E11_rep_D_Cefpodoxime_proxetila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202012883-1882179 16E11_rep_D_Cefpodoxime_proxetila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121039509-1879300 14F07_rep_D_Estriola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121039509-1879300 14F07_rep_D_Estriola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130318625-1877409 13A02_rep_B_Denatonium_benzoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130318625-1877409 13A02_rep_B_Denatonium_benzoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122738901-1880074 15G09_rep_D_Cilnidipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122738901-1880074 15G09_rep_D_Cilnidipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-blank (6).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GA1_01_17134.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00072394.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_30_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_30_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B11_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_19_male_2022_1017_Michael_neg-0.0043.mzML at line 689
Premature end of data in tag binary line 19319, line 19319, column 193042 (4_19_male_2022_1017_Michael_neg-0.0043.mzML, line 19319)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B16_id_MSn_negative.mzML at line 21
index 312 is out of bounds for axis 0 with size 312
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hypB_P3E12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (hypB_P3E12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111614285-1871566 10G10_rep_B_Drofenine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111614285-1871566 10G10_rep_B_Drofenine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person21_RBC_youth_POS.mzXML at line 689
attributes construct error, line 41, column 81 (Person21_RBC_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR324h3a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121758009-1867104 04E03_rep_C_Fenoterol_hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121758009-1867104 04E03_rep_C_Fenoterol_hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123951751-1876358 08F10_rep_D_Diflorasone_Diacetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123951751-1876358 08F10_rep_D_Diflorasone_Diacetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mnaT_#2_P4E10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (mnaT_#2_P4E10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hD1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hD1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_G1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_G1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145542026-1863908 02G04_rep_A_Chlorhexidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145542026-1863908 02G04_rep_A_Chlorhexidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD6_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_235.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153938928-1577650 Batch6_CCRFCEM_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151749749-1576581 Batch3_PANC1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-10d.mzXML at line 689
Premature end of data in tag peaks line 2012, line 2016, column 7673 (YnYn-10d.mzXML, line 2016)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151704526-1576544 Batch7_SKMES1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152814834-1577089 Batch3_PANC0327_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp2/20180309173107249-1989055 skin 5da.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnP_P4H8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (phnP_P4H8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_H2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B14_id_MSn_positive.mzML at line 21
index 736 is out of bounds for axis 0 with size 736
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124625921-1876671 09H11_rep_A_Cefuroxime_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124625921-1876671 09H11_rep_A_Cefuroxime_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/332.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123003148-1867685 05B06_rep_B_Zaprinastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123003148-1867685 05B06_rep_B_Zaprinastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD3_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control239_neg.mzXML at line 689
attributes construct error, line 37, column 75 (Control239_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD3_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153609834-1868684 06D02_rep_C_Pefloxacinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153609834-1868684 06D02_rep_C_Pefloxacinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111509686-1921096 1_H9_GAP1_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111509686-1921096 1_H9_GAP1_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101305871-1869392 07B11_rep_B_Ethamivanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101305871-1869392 07B11_rep_B_Ethamivanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_49_CNR_20.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_49_CNR_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1A08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control127_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control127_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/HFS_vehicle_T4_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200639173-1881569 16A05_rep_A_Nevirapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200639173-1881569 16A05_rep_A_Nevirapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR131_5h1a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 44493, column 979 (pBlateR131_5h1a.mzML, line 44493)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122832335-1867613 05A06_rep_A_Ascorbic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122832335-1867613 05A06_rep_A_Ascorbic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_blood_0h_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Volunteer3_blood_0h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152456285-1868161 05H08_rep_D_Clomiphene_citrate_(Z,E)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152456285-1868161 05H08_rep_D_Clomiphene_citrate_(Z,E)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_Plasma4_POS.mzXML at line 689
attributes construct error, line 38, column 75 (Person4_Plasma4_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153552486-1577460 Batch5_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_B8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095328/peak/MS_RAW_data/230811_BBT301_TPP_HighPH_7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145908130-1864074 02D10_rep_A_Picotamide monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145908130-1864074 02D10_rep_A_Picotamide monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample28n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1455.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1455.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150824943-1924608 2_G10_RGT2_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150824943-1924608 2_G10_RGT2_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200857929-1881671 16G07_rep_A_Alosetron_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200857929-1881671 16G07_rep_A_Alosetron_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/585.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltL_#1_P5G12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (gltL_#1_P5G12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222848191-1869871 01H05_rep_A_Amitryptiline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222848191-1869871 01H05_rep_A_Amitryptiline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_ehigh (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112408116-1874057 10C03_rep_D_Sulfamethizoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112408116-1874057 10C03_rep_D_Sulfamethizoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125339417-1862919 03G02_rep_D_Norfloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125339417-1862919 03G02_rep_D_Norfloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111843781-1921666 2_C3_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111843781-1921666 2_C3_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_11_Dorsal_skin_Ma_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 93 (Mouse_11_Dorsal_skin_Ma_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/CORN_AAW2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d8_279_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 24879, column 1 (SysVirol_IFL001_1918_d8_279_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 24879)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121459645-1879495 15B11_rep_A_Diclazurilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121459645-1879495 15B11_rep_A_Diclazurilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202126222-1878234 09C10_rep_D_Zonisamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202126222-1878234 09C10_rep_D_Zonisamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130601469-1877537 13D09_rep_C_Zuclopenthixol_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130601469-1877537 13D09_rep_C_Zuclopenthixol_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_3_P_rep_2_B-C5_1_5657.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121413429-1866929 04C04_rep_B_Doxepin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121413429-1866929 04C04_rep_B_Doxepin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F5_id_negative.mzML at line 21
index 225 is out of bounds for axis 0 with size 225
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-057_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample075_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case203_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case203_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_61.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI6_3_5_1_874.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ahr_P3H2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (ahr_P3H2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Blank_pesticide_Swabs_170405225452.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121824132-1879650 15E10_rep_B_Tripelennamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121824132-1879650 15E10_rep_B_Tripelennamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1153.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/TAA204_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112022837-1921750 2_A10_GAP1_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112022837-1921750 2_A10_GAP1_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200921851-1877695 09E08_rep_B_Tramadol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200921851-1877695 09E08_rep_B_Tramadol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087772/raw/190516_LP_JH_Blank7_pos.mzML at line 689
XML declaration allowed only at the start of the document, line 470, column 3898 (190516_LP_JH_Blank7_pos.mzML, line 470)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/prs_P4E7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (prs_P4E7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123206524-1867779 05F06_rep_B_Methiothepin_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123206524-1867779 05F06_rep_B_Methiothepin_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097681/peak/amino acids/030521-b1-OV-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A18_id.mzML at line 21
index 601 is out of bounds for axis 0 with size 601
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yahA_P3B1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (yahA_P3B1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_F2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C14_id.mzML at line 21
index 540 is out of bounds for axis 0 with size 540
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112908983-1874296 11F10_rep_A_Fluvastatin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112908983-1874296 11F10_rep_A_Fluvastatin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case216_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case216_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201527094-1877960 09A11_rep_C_Pinaverium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201527094-1877960 09A11_rep_C_Pinaverium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210112_AD_52.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/214.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112107113-1921788 2_E4_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112107113-1921788 2_E4_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201652623-1878024 09E11_rep_C_Irinotecan_hydrochloride_trihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201652623-1878024 09E11_rep_C_Irinotecan_hydrochloride_trihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wzyE_P4F1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (wzyE_P4F1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101035967-1869272 07G02_rep_B_Ciclopirox_ethanolamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101035967-1869272 07G02_rep_B_Ciclopirox_ethanolamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sdhD_#3_P3B11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (sdhD_#3_P3B11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ssuC_P3C4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (ssuC_P3C4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202423156-1878374 10H10_rep_A_Pridinol_methanesulfonate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202423156-1878374 10H10_rep_A_Pridinol_methanesulfonate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150349423-1864772 02F10_rep_C_Cefotaxime sodium salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150349423-1864772 02F10_rep_C_Cefotaxime sodium salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O19_id_MSn_positive.mzML at line 21
index 427 is out of bounds for axis 0 with size 427
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125058686-1876845 12F08_rep_C_Dehydroisoandosterone_3-acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125058686-1876845 12F08_rep_C_Dehydroisoandosterone_3-acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114145124-1922829 4_F7_STE2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114145124-1922829 4_F7_STE2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I15_id_MSn_negative.mzML at line 21
index 299 is out of bounds for axis 0 with size 299
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GF3_01_17208.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_F7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145918206-1864082 02H02_rep_A_Erythromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145918206-1864082 02H02_rep_A_Erythromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A7_id.mzML at line 21
index 555 is out of bounds for axis 0 with size 555
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G19_id_MSn_negative.mzML at line 21
index 332 is out of bounds for axis 0 with size 332
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltB_#1_P4H12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (gltB_#1_P4H12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-25d.mzXML at line 689
Premature end of data in tag peaks line 1271, line 1275, column 7671 (YnYn-25d.mzXML, line 1275)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/694.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125403966-1862939 03F10_rep_D_Ketoprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125403966-1862939 03F10_rep_D_Ketoprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113744574-1922616 3_C10_STE2_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113744574-1922616 3_C10_STE2_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ddpC_P4G11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ddpC_P4G11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA24.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224306416-1870527 01F04_rep_D_Triflupromazine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224306416-1870527 01F04_rep_D_Triflupromazine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153940089-1577651 Batch6_CCRFCEM_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112122355-1921801 2_F8_GAP1_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112122355-1921801 2_F8_GAP1_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124709073-1862606 03G10_rep_B_Nefopam_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124709073-1862606 03G10_rep_B_Nefopam_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152521029-1576944 Batch1_NCIH1838_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malK_P4E3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (malK_P4E3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET68.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET68.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087689/raw/Hela_bulk/OR11_20160122_PG_HeLa_CVB3_CT_C.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yiaK_P3E6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (yiaK_P3E6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/723.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_A6_id_negative.mzML at line 21
index 239 is out of bounds for axis 0 with size 239
Error processing file: /data/datasets/server/MassIVE/MSV000094202/ccms_peak/3DMM_pos_raw/Plate3/20220501_ACN_13.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170209_058ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a3/2f6cb21b23240ad55280ece5f21832/input_file/SH7_20170209_058ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124631244-1862576 03C01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124631244-1862576 03C01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET123.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET123.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O7_id_MSn_positive.mzML at line 21
index 519 is out of bounds for axis 0 with size 519
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114021235-1874788 11E10_rep_D_Clinafloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114021235-1874788 11E10_rep_D_Clinafloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD1_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009407_20190701184647_IBD200_E4_B6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152823128-1577096 Batch3_RERFLCA1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079466/peak/Adenocalymma imperatoris/blank-POS.mgf at line 1048
'str' object cannot be interpreted as an integer
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU48.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B01Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/286.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130020763-1863249 04G07_rep_A_Clemastine_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130020763-1863249 04G07_rep_A_Clemastine_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_121.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D20_id_negative.mzML at line 21
index 241 is out of bounds for axis 0 with size 241
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ6_2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201754748-1878071 09E11_rep_D_Irinotecan_hydrochloride_trihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201754748-1878071 09E11_rep_D_Irinotecan_hydrochloride_trihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person05_blood_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 101 (Person05_blood_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_P_E2E3_C_31Jan18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/4.6_4OI.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lsrC_P4A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (lsrC_P4A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0018_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0018_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sstT_#2_P4A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (sstT_#2_P4A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A10_id_MSn_negative.mzML at line 21
index 257 is out of bounds for axis 0 with size 257
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124936957-1876784 12A10_rep_C_Diacereina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124936957-1876784 12A10_rep_C_Diacereina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc060_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc060_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123821078-1876285 08D05_rep_C_Diclofenac_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123821078-1876285 08D05_rep_C_Diclofenac_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control64_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control64_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/blank_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_73.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_73.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_5_Blood_HO_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 86 (Mouse_5_Blood_HO_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153652235-1868719 06A05_rep_C_Idebenoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153652235-1868719 06A05_rep_C_Idebenoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_05_blood_RESV_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_05_blood_RESV_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3F04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125118212-1862805 03B10_rep_C_Phenformin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125118212-1862805 03B10_rep_C_Phenformin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125402763-1862938 03F10_rep_D_Ketoprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125402763-1862938 03F10_rep_D_Ketoprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glgP_P3G7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (glgP_P3G7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person17_blood_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 83 (Person17_blood_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/LiLi-9d.mzXML at line 689
Premature end of data in tag peaks line 36, line 40, column 3577 (LiLi-9d.mzXML, line 40)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample099_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112442895-1921976 3_C7_GPR1_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112442895-1921976 3_C7_GPR1_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I18_id.mzML at line 21
index 554 is out of bounds for axis 0 with size 554
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I23_id_negative.mzML at line 21
index 273 is out of bounds for axis 0 with size 273
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/601.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190124005406.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151520885-1576457 Batch7_CORL23_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151723068-1925064 4_E11_SNF3_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151723068-1925064 4_E11_SNF3_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130800194-1877631 13H10_rep_C_Levocabastine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130800194-1877631 13H10_rep_C_Levocabastine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B10_id_MSn_negative.mzML at line 21
index 321 is out of bounds for axis 0 with size 321
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_B6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152024640-1576708 Batch1_NCIH2073_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151544710-1576477 Batch7_UACC62_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_plasma_1h_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer1_plasma_1h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_3_RESV_0uM_NEG.mzXML at line 689
attributes construct error, line 38, column 81 (HepG2_3_RESV_0uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153305551-1868538 06H11_rep_B_Closantela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153305551-1868538 06H11_rep_B_Closantela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d3_275_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 20959, column 1 (SysVirol_IFL001_Cal04RG_d3_275_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 20959)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_A8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_A11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223721704-2227602 Healthy1.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B9_id_MSn_negative.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202157132-1882260 16C01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202157132-1882260 16C01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hC2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hC2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N22_id.mzML at line 21
index 532 is out of bounds for axis 0 with size 532
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control166_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control166_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_A3_id_positive.mzML at line 21
index 406 is out of bounds for axis 0 with size 406
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C12_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153827981-1577590 Batch7_UO31_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113618998-1874593 11E03_rep_C_Trimeprazine_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113618998-1874593 11E03_rep_C_Trimeprazine_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009647_IBD200_E18_A3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/244.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101238406-1869370 07D06_rep_B_Trimethadioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101238406-1869370 07D06_rep_B_Trimethadioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153934191-1577646 Batch6_SF268_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_50_NOR_25.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_50_NOR_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_cell lysate/mzML/UDP3_baicalein_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J6_id_MSn_positive.mzML at line 21
index 407 is out of bounds for axis 0 with size 407
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person11_RBC_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Person11_RBC_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_93.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ05041540.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_67.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNP082_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_C1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_high (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_E4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD2_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30114 - GI-14-594.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152425430-1868138 05E11_rep_D_Benzbromaronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152425430-1868138 05E11_rep_D_Benzbromaronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I13_id_negative.mzML at line 21
index 247 is out of bounds for axis 0 with size 247
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yejA_P6E9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (yejA_P6E9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/005_1020_1_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlB1b.mzXML at line 689
expected '>', line 718, column 11 (ExtraControlB1b.mzXML, line 718)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151938819-1576672 Batch1_HCC1395_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/660.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125948684-1877250 13F06_rep_A_Ethamsylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125948684-1877250 13F06_rep_A_Ethamsylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H8_id_MSn_positive.mzML at line 21
index 664 is out of bounds for axis 0 with size 664
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdsD_P3G1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (kdsD_P3G1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample094.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000085357/peak/Peak_List_Files/Lipidomics_Samples/TAM_IMS_negvel_5735_06Feb17_Lola-WCSH7905.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (TAM_IMS_negvel_5735_06Feb17_Lola-WCSH7905.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112929155-1874311 11A11_rep_A_Sulconazole_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112929155-1874311 11A11_rep_A_Sulconazole_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHF19.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113945421-1874759 11H07_rep_D_Bicalutamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113945421-1874759 11H07_rep_D_Bicalutamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/prpp_purF_P4C6_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (prpp_purF_P4C6_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153344049-1577355 Batch5_NCIH1650_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/175-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_24.mzXML at line 689
Premature end of data in tag peaks line 19810, line 19814, column 11843 (20121114_24.mzXML, line 19814)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD1_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E15_id.mzML at line 21
index 565 is out of bounds for axis 0 with size 565
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD3_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151131591-1576268 Batch5_SHP77_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH35.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHL05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Column2_test_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/005_Soil_10mMIntra_2_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122911383-1880147 15C08_rep_D_Fludarabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122911383-1880147 15C08_rep_D_Fludarabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165754528-2227504 PAT48.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Blank_pesticide_Swabs_170403170542.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample057.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxH_P3A5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (lpxH_P3A5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hflX_P6D5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (hflX_P6D5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201216_LKM_Hydrophilic_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case22_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case22_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample090.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080624.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114020435-1922754 3_B5_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114020435-1922754 3_B5_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5L001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4G12_160601030203.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control145_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control145_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_C4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112553626-1922038 4_H4_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112553626-1922038 4_H4_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample158_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112328741-1921911 3_A1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112328741-1921911 3_A1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/277.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_74.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125044169-1862778 03D04_rep_C_Oxolinic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125044169-1862778 03D04_rep_C_Oxolinic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C12_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223422685-1870123 01A10_rep_B_Hydrochlorothiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223422685-1870123 01A10_rep_B_Hydrochlorothiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_G9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_A8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A21_id_MSn_positive.mzML at line 21
index 651 is out of bounds for axis 0 with size 651
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E14_id_MSn_positive.mzML at line 21
index 532 is out of bounds for axis 0 with size 532
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_E8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152150586-1576776 Batch1_HCC1806_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/QC_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/blank_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092009739-1878629 13E04_rep_D_Azapropazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092009739-1878629 13E04_rep_D_Azapropazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ3_4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample071_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/006_Ammonia_Day17_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165746841-2227497 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125302275-1862889 03A03_rep_C_Pentylenetetrazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125302275-1862889 03A03_rep_C_Pentylenetetrazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124045073-1876400 08A02_rep_D_Ziprasidone__Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124045073-1876400 08A02_rep_D_Ziprasidone__Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152901786-1577129 Batch3_A549_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/459-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_024EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c8/8ed6f42820aded914aea0d58a47544/input_file/QC_20170207_024EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1F001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125454184-1862980 03F08_rep_D_Mebendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125454184-1862980 03F08_rep_D_Mebendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_0123_190124021714.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079134/updates/2016-11-21_negarg_3e021a74/peak/mzXML_Batch2_November2016/Blanks/Blank11_GG5_01_31000.mzXML at line 689
Premature end of data in tag scan line 10870, line 10871, column 1 (Blank11_GG5_01_31000.mzXML, line 10871)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151715268-1576553 Batch7_RXF393_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085847/raw/andrem1/66_StdMix_3_Neg.mzML at line 689
attributes construct error, line 4189, column 30 (66_StdMix_3_Neg.mzML, line 4189)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1A04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_139.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_phospho_HFD27_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR231_5h1a.mzML at line 689
Opening and ending tag mismatch: binary line 28708 and spectrum, line 28739, column 20 (pBpumR231_5h1a.mzML, line 28739)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223720632-2227601 Healthy1.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223659144-1870243 01C05_rep_C_Norethynodrela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223659144-1870243 01C05_rep_C_Norethynodrela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113137466-1922298 1_D3_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113137466-1922298 1_D3_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_E9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_40_CNR_40.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_40_CNR_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200927327-1877699 09D03_rep_B_Sumatriptan_succinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200927327-1877699 09D03_rep_B_Sumatriptan_succinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K8_id_MSn_positive.mzML at line 21
index 513 is out of bounds for axis 0 with size 513
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112741927-1874227 11C07_rep_A_Oxalamine_citrate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112741927-1874227 11C07_rep_A_Oxalamine_citrate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_A7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190315824-1889783 Nb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/R24_III_ESI-.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_G10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD2_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case148_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case148_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122531299-1879975 15C01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122531299-1879975 15C01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/827.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202202421-1878263 10C03_rep_A_Sulfamethizoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202202421-1878263 10C03_rep_A_Sulfamethizoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_sample03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113058406-1922264 1_B4_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113058406-1922264 1_B4_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_78.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/002_1010_3_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mdtI_#4_P4D10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (mdtI_#4_P4D10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113044607-1922252 1_H5_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113044607-1922252 1_H5_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD1_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C1_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B10P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Microbacterium_testaceum_BM5L003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_A9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125417428-1876995 12F02_rep_D_Propofola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125417428-1876995 12F02_rep_D_Propofola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124618418-1876665 09F11_rep_A_Cefmetazole_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124618418-1876665 09F11_rep_A_Cefmetazole_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123140004-1875964 08F10_rep_B_Diflorasone_Diacetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123140004-1875964 08F10_rep_B_Diflorasone_Diacetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA24.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007605_031718-buffer ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_1_P_rep_4_B-C7_1_5531.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153313130-1868544 06C02_rep_B_Suloctidila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153313130-1868544 06C02_rep_B_Suloctidila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/39-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F21_id_MSn_negative.mzML at line 21
index 330 is out of bounds for axis 0 with size 330
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2G08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123911997-1876326 08A07_rep_C_Eserine_hemisulfate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123911997-1876326 08A07_rep_C_Eserine_hemisulfate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201818805-1882089 16G09_rep_C_Palonosetron_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201818805-1882089 16G09_rep_C_Palonosetron_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR224h3b.mzML at line 689
Unescaped '<' not allowed in attributes values, line 152491, column 596 (pBpumR224h3b.mzML, line 152491)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/629.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201505085-1881945 16A08_rep_C_Amorolfine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201505085-1881945 16A08_rep_C_Amorolfine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_18091336_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1451.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1451.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_365.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113430902-1922449 2_F9_IZH2_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113430902-1922449 2_F9_IZH2_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_G12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101532468-1869507 07H02_rep_C_Hexetidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101532468-1869507 07H02_rep_C_Hexetidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114146792-1874857 11A05_rep_D_Spectinomycin_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114146792-1874857 11A05_rep_D_Spectinomycin_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S66.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S66.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/CORN_AD4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/426.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/155-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E10_id_MSn_negative.mzML at line 21
index 322 is out of bounds for axis 0 with size 322
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_11_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case17_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case17_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113748669-1874665 11F09_rep_C_Doxazosin_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113748669-1874665 11F09_rep_C_Doxazosin_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_127.mzXML at line 689
Premature end of data in tag peaks line 23601, line 23605, column 15939 (20121114_127.mzXML, line 23605)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A22_id.mzML at line 21
index 530 is out of bounds for axis 0 with size 530
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150249680-1924323 1_D10_RGT2_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150249680-1924323 1_D10_RGT2_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw4_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201916488-1878133 09A10_rep_D_Etanidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201916488-1878133 09A10_rep_D_Etanidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112656840-1874191 11B07_rep_A_Suprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112656840-1874191 11B07_rep_A_Suprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R13h2a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 158697, column 1065 (pBlichMO17R13h2a.mzML, line 158697)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/178-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/489-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101239652-1869371 07G11_rep_B_Parthenolidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101239652-1869371 07G11_rep_B_Parthenolidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153903427-1577620 Batch6_HCC1806_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152740442-1868288 06A10_rep_A_Amiodarone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152740442-1868288 06A10_rep_A_Amiodarone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112123554-1921802 2_A8_GAP1_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112123554-1921802 2_A8_GAP1_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223009648-1869932 01C03_rep_A_Panthenol (D)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223009648-1869932 01C03_rep_A_Panthenol (D)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200754048-1881624 16C11_rep_A_Azatadine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200754048-1881624 16C11_rep_A_Azatadine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113654542-1874622 11D06_rep_C_Zolmitriptana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113654542-1874622 11D06_rep_C_Zolmitriptana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1767.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1767.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151631947-1925021 4_G1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151631947-1925021 4_G1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/481-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210314_LKM_control_nobeads_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201201236-1877811 09B11_rep_B_Avermectin_B1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201201236-1877811 09B11_rep_B_Avermectin_B1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201211945-1881815 16F08_rep_B_Lofepraminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201211945-1881815 16F08_rep_B_Lofepraminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/066_65.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNS606_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GC4_01_16932.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR224h3a.mzML at line 689
Specification mandates value for attribute van, line 199517, column 78 (pMIBSDR224h3a.mzML, line 199517)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/012_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123120066-1875948 08A04_rep_A_Pyridostigmine_iodidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123120066-1875948 08A04_rep_A_Pyridostigmine_iodidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_215.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample166.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112612453-1874156 11H07_rep_A_Bicalutamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112612453-1874156 11H07_rep_A_Bicalutamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GC6_01_16809.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201642038-1878016 09G02_rep_C_Trihexyphenidyl-D,L_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201642038-1878016 09G02_rep_C_Trihexyphenidyl-D,L_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_06_849_prot_08_IMS_11Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151414786-1576403 Batch7_CHAGOK1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case22_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case22_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170127_063ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/70/7a96c1a68dcd15ce726e423be0adf6/input_file/MMW5_20170127_063ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152854748-1577123 Batch3_RERFLCA1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/040_CRa_H9M5_M470_L03_K1_high_pos.mzXML at line 689
Premature end of data in tag peaks line 19723, line 19727, column 32244 (040_CRa_H9M5_M470_L03_K1_high_pos.mzXML, line 19727)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/201901016_ES_H3K_batch14_repA_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151212281-1576301 Batch5_NCIH1755_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125542228-1863019 03G07_rep_D_Griseofulvinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125542228-1863019 03G07_rep_D_Griseofulvinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N14_id_MSn_positive.mzML at line 21
index 645 is out of bounds for axis 0 with size 645
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153131205-1577248 Batch5_NCIH727_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O11_id_MSn_negative.mzML at line 21
index 368 is out of bounds for axis 0 with size 368
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111350904-1871456 10C06_rep_B_Spiramycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111350904-1871456 10C06_rep_B_Spiramycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_B7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_B7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_83.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA23.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ynaI_P5G4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ynaI_P5G4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153809040-1577574 Batch7_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145556998-1863920 02C11_rep_A_Oxandroloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145556998-1863920 02C11_rep_A_Oxandroloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_202.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_C11_id_positive.mzML at line 21
index 333 is out of bounds for axis 0 with size 333
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224041623-1870414 01D11_rep_D_Niclosamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224041623-1870414 01D11_rep_D_Niclosamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_C3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009660_IBD200_E19_A11.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121822883-1879649 15B09_rep_B_Methenamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121822883-1879649 15B09_rep_B_Methenamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_blank1.mzXML at line 689
Premature end of data in tag peaks line 1279, line 1283, column 7661 (L_blank1.mzXML, line 1283)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GB8_01_16797.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S25.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S25.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C8_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I10_id.mzML at line 21
index 535 is out of bounds for axis 0 with size 535
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125149373-1862830 03E10_rep_C_Metoclopramide_monohydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125149373-1862830 03E10_rep_C_Metoclopramide_monohydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_18111330_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C2_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125302714-1876938 12C11_rep_D_Nisoxetine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125302714-1876938 12C11_rep_D_Nisoxetine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_E12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075491.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153337716-1577350 Batch5_HDQP1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purA_P3D4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024989 (purA_P3D4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091951686-1878615 13A11_rep_D_Indatraline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091951686-1878615 13A11_rep_D_Indatraline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d3_275_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 39039, column 1 (SysVirol_IFT001_Cal04RG_d3_275_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 39039)
Error processing file: /data/datasets/server/MassIVE/MSV000095143/peak/Samples/Plate11/Plate_11_H6_Sample_402123926.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C9_id_MSn_positive.mzML at line 21
index 602 is out of bounds for axis 0 with size 602
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113321785-1874489 11B11_rep_B_Aminophyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113321785-1874489 11B11_rep_B_Aminophyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYB009.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD4_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S01_0124.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122902322-1875839 08H11_rep_A_Sertindoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122902322-1875839 08H11_rep_A_Sertindoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample206_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200752622-1881623 16C11_rep_A_Azatadine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200752622-1881623 16C11_rep_A_Azatadine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150754896-1864962 02H02_rep_D_Erythromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150754896-1864962 02H02_rep_D_Erythromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124838827-1862678 03C10_rep_B_Aminopurine,_6-benzyla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124838827-1862678 03C10_rep_B_Aminopurine,_6-benzyla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHC01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_C11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/346.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112408244-1921946 3_A3_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112408244-1921946 3_A3_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ09031436.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/adeQ_#4_P4C8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (adeQ_#4_P4C8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM6C007.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.grif_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121228283-1879382 14D10_rep_D_Methicillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121228283-1879382 14D10_rep_D_Methicillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S63.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S63.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125304766-1862891 03F01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125304766-1862891 03F01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152401740-1576880 Batch2_NCIH2085_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130449562-1877480 13C01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130449562-1877480 13C01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_244.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S43.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S43.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G10_id_negative.mzML at line 21
index 254 is out of bounds for axis 0 with size 254
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample096.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample043_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control85_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control85_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_5_B_rep_2_B-C1_1_5652.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081037.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084056/ccms_peak/BRANCO DESLIGA_POS_REP_1-1_01_7576.mzML at line 689
Premature end of data in tag binary line 1087813, line 1087813, column 5243 (BRANCO DESLIGA_POS_REP_1-1_01_7576.mzML, line 1087813)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152749867-1577068 Batch2_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5G02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD2_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114522509-1875031 12A01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114522509-1875031 12A01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150556068-1864870 02E08_rep_C_Isoconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150556068-1864870 02E08_rep_C_Isoconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nnr_P5G3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (nnr_P5G3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222824099-1869853 01F10_rep_A_Pheniramine maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222824099-1869853 01F10_rep_A_Pheniramine maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/127-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lipB_#1_P4C11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (lipB_#1_P4C11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/srlB_P4D12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (srlB_P4D12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124206717-1862250 03G08_rep_A_Clemizole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124206717-1862250 03G08_rep_A_Clemizole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_A3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207133001023-1733932 1fb Wound5D 2 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_105.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fau_P3G12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (fau_P3G12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122656833-1867536 05F09_rep_A_Bezafibratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122656833-1867536 05F09_rep_A_Bezafibratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151638308-1576522 Batch7_NCIH441_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C12_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123809667-1876276 08H05_rep_C_Tomoxetine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123809667-1876276 08H05_rep_C_Tomoxetine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202136272-1878242 09E05_rep_D_Mirabegrona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202136272-1878242 09E05_rep_D_Mirabegrona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_1_RESV_200uM_POS.mzXML at line 689
attributes construct error, line 38, column 83 (C2C12_1_RESV_200uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_102a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlD3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraControlD3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-11d.mzXML at line 689
Premature end of data in tag peaks line 2012, line 2016, column 3576 (YnYn-11d.mzXML, line 2016)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH51.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151337527-1576372 Batch6_SR8714_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153255808-1577316 Batch4_NCIH1793_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151933555-1867910 05B05_rep_C_Sulfisoxazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151933555-1867910 05B05_rep_C_Sulfisoxazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8H12_160605172903.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD2_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130623659-1877554 13B02_rep_C_Remoxipride_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130623659-1877554 13B02_rep_C_Remoxipride_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gcl_#2_P4D1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (gcl_#2_P4D1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD3_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-130_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_19071524_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170125_059EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/f1/2337582696103fc8e58af5499ebf62/input_file/SH9_20170125_059EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GC9_01_12106.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fbp_P3A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (fbp_P3A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD6_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/004_Nitrate_Day2_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_blood_1h_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Volunteer1_blood_1h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153642921-1577502 Batch5_NCIH1792_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L10 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_0124_190124230226.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_G7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125716292-1877132 13B06_rep_A_Naftopidil_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125716292-1877132 13B06_rep_A_Naftopidil_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_009ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/58/d13a71dd526c5ccfd6e02a236f3c40/input_file/QC_20170127_009ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET125.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET125.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/lgtS_gloB_P5H1_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (lgtS_gloB_P5H1_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B9_id_MSn_negative.mzML at line 21
index 292 is out of bounds for axis 0 with size 292
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample139.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000079484/ccms_peak/42b.mzXML at line 689
Premature end of data in tag peaks line 27931, line 27935, column 5704 (42b.mzXML, line 27935)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_88.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_C10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101922404-1869694 07F10_rep_D_Thiocolchicosideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101922404-1869694 07F10_rep_D_Thiocolchicosideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124750113-1862639 03B09_rep_B_Mephenesinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124750113-1862639 03B09_rep_B_Mephenesinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHF01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125544198-1877061 12B04_rep_D_Felbinaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125544198-1877061 12B04_rep_D_Felbinaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202433163-1878382 10A05_rep_A_Sulfamethoxypyridazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202433163-1878382 10A05_rep_A_Sulfamethoxypyridazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111941782-1921715 2_B9_GAP1_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111941782-1921715 2_B9_GAP1_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_23.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_23.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4F12_160601001320.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152700659-1577027 Batch1_NCIH1395_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_D3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124316591-1876522 08C01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124316591-1876522 08C01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ3_5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD3_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_133_3C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113530806-1922501 2_E3_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113530806-1922501 2_E3_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_sp__WIAI05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170125_058EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/bf/1eca6e9f891816672cd3c97726396f/input_file/MMW3_20170125_058EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control90_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control90_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/158-4_MsMs_25min_30eV_GE6_01_4137.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/797.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C10_id_MSn_positive.mzML at line 21
index 396 is out of bounds for axis 0 with size 396
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202027215-1878188 09F06_rep_D_Venlafaxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202027215-1878188 09F06_rep_D_Venlafaxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_42_150319155422.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD6_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD3_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150346831-1864770 02G05_rep_C_Loperamide hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150346831-1864770 02G05_rep_C_Loperamide hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223923657-2227708 PAT41.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122140612-1867281 04A09_rep_D_Clonidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122140612-1867281 04A09_rep_D_Clonidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092408822-1878815 14E08_rep_A_Nelarabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092408822-1878815 14E08_rep_A_Nelarabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111710110-1871609 10G02_rep_B_Clobetasol_propionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111710110-1871609 10G02_rep_B_Clobetasol_propionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/002_Urea_Day14_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G18_id_negative.mzML at line 21
index 256 is out of bounds for axis 0 with size 256
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112042967-1873028 10A04_rep_C_Phenethicillin_potassium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112042967-1873028 10A04_rep_C_Phenethicillin_potassium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G5_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/820.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190109_ES_H3K_batch12_repB_181.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_54.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152932441-1577155 Batch5_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223622366-1870215 01B07_rep_C_Sulfathiazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223622366-1870215 01B07_rep_C_Sulfathiazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114918493-1875215 12G01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114918493-1875215 12G01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122800592-1867588 05D03_rep_A_Dobutamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122800592-1867588 05D03_rep_A_Dobutamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_106.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_HT_080_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_E1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/875.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153625599-1868697 06F11_rep_C_Dinoprost_trometamolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153625599-1868697 06F11_rep_C_Dinoprost_trometamolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_F3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083595/raw/HD1.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (HD1.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111816581-1872047 10B04_rep_C_Metoprolol-(+,-)_(+)-tartrate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111816581-1872047 10B04_rep_C_Metoprolol-(+,-)_(+)-tartrate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_0124.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1098.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD1_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_A10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cyoA_P4B3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (cyoA_P4B3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_H2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_40.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_40.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153311892-1868543 06G11_rep_B_Ceforanideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153311892-1868543 06G11_rep_B_Ceforanideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102000295-1869725 07A05_rep_D_Benperidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102000295-1869725 07A05_rep_D_Benperidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H3_id.mzML at line 21
index 531 is out of bounds for axis 0 with size 531
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD3_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201103131-1877769 09H11_rep_B_Cefuroxime_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201103131-1877769 09H11_rep_B_Cefuroxime_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125011413-1862752 03B06_rep_C_Aceclofenaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125011413-1862752 03B06_rep_C_Aceclofenaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180410_ES_batch7_pWT_a.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GA9_01_17142.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100625893-1869072 07D08_rep_A_Nystatineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100625893-1869072 07D08_rep_A_Nystatineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD1_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_73.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111629147-1921550 1_A4_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111629147-1921550 1_A4_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123223232-1875999 08A09_rep_B_Acarboseb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123223232-1875999 08A09_rep_B_Acarboseb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/844.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K15_id_MSn_positive.mzML at line 21
index 507 is out of bounds for axis 0 with size 507
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample122_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_dilute.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/627.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112037222-1921762 2_A11_GAP1_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112037222-1921762 2_A11_GAP1_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111358905-1871462 10B09_rep_B_Folinic_acid_calcium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111358905-1871462 10B09_rep_B_Folinic_acid_calcium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152120485-1576752 Batch1_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201255937-1881848 16C09_rep_B_Actaritb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201255937-1881848 16C09_rep_B_Actaritb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_low.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121016598-1879283 14C05_rep_D_Meprylcaine_hydrochloride_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121016598-1879283 14C05_rep_D_Meprylcaine_hydrochloride_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123814728-1876280 08C11_rep_C_Etretinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123814728-1876280 08C11_rep_C_Etretinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample154.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114253069-1874911 12H07_rep_A_Megestrol_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114253069-1874911 12H07_rep_A_Megestrol_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30064 - GI-14-297.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130642744-1877569 13C10_rep_C_Chlormadinone_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130642744-1877569 13C10_rep_C_Chlormadinone_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5G12_160602145253.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_A9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR02/140429pCAPBA.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B15_id_MSn_positive.mzML at line 21
index 682 is out of bounds for axis 0 with size 682
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/494-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control249_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control249_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-110_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152902573-1868352 06A09_rep_A_Butoconazole_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152902573-1868352 06A09_rep_A_Butoconazole_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153427692-1868603 06D10_rep_B_Carbimazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153427692-1868603 06D10_rep_B_Carbimazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/artP_P3C7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (artP_P3C7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD5_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/clsA_P3F12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (clsA_P3F12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/-ve_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GF2_01_17207.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E12_id_MSn_positive.mzML at line 21
index 460 is out of bounds for axis 0 with size 460
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151131890-1865131 02E08_rep_D_Isoconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151131890-1865131 02E08_rep_D_Isoconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case99_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case99_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125226097-1876910 12D02_rep_C_(+)-Isoproterenol_(+)-bitartrate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125226097-1876910 12D02_rep_C_(+)-Isoproterenol_(+)-bitartrate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/289.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yccX_P4B4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (yccX_P4B4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153938928-1577650 Batch6_CCRFCEM_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1I002C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153503737-1577420 Batch4_SW1573_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111646692-1871591 10B08_rep_B_Trimetozinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111646692-1871591 10B08_rep_B_Trimetozinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_159.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_159.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_A1_160424173117.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAI01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223801964-2227637 PAT35.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202358606-1878355 10D08_rep_A_Chlorotrianiseneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202358606-1878355 10D08_rep_A_Chlorotrianiseneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153247256-1577309 Batch5_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_304_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112154591-1873565 10F06_rep_D_Sulfamethazine_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112154591-1873565 10F06_rep_D_Sulfamethazine_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007519_031618-0.01Thr6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5C03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_66.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_66.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091820812-1878543 13F10_rep_D_Tribenosideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091820812-1878543 13F10_rep_D_Tribenosideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/D-arabinitol.mzXML at line 689
Premature end of data in tag peaks line 4847, line 4851, column 52719 (D-arabinitol.mzXML, line 4851)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190322541-1889788 NNa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bfr_#2_P4A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (bfr_#2_P4A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/TAA040_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fhuE_P4C6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (fhuE_P4C6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124456305-1876604 09C10_rep_A_Zonisamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124456305-1876604 09C10_rep_A_Zonisamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-8-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_82.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111837948-1921661 2_H5_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111837948-1921661 2_H5_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/888.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-050_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201406491-1881901 16C04_rep_B_1,8-Dihydroxyanthraquinonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201406491-1881901 16C04_rep_B_1,8-Dihydroxyanthraquinonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152605808-1576981 Batch2_SW900_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H21_id_negative.mzML at line 21
index 247 is out of bounds for axis 0 with size 247
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125859933-1877212 13E05_rep_A_Meptazinol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125859933-1877212 13E05_rep_A_Meptazinol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_SERUM_V5_CAT.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_205.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Kideny_raw files/ISAS_Lumos_kidney_Labeled_3.mzML at line 689
Premature end of data in tag spectrumList line 92, line 60646, column 1 (ISAS_Lumos_kidney_Labeled_3.mzML, line 60646)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113610118-1874586 11F07_rep_C_Tolmetin_sodium_salt_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113610118-1874586 11F07_rep_C_Tolmetin_sodium_salt_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GE5_01_17196.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F17_id_negative.mzML at line 21
index 265 is out of bounds for axis 0 with size 265
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D17_id_MSn_negative.mzML at line 21
index 298 is out of bounds for axis 0 with size 298
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122301109-1867345 04D03_rep_D_Indomethacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122301109-1867345 04D03_rep_D_Indomethacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_dilute_190201031115.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202325864-1878329 10B11_rep_A_Ebselenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202325864-1878329 10B11_rep_A_Ebselenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_E8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNH099_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007622_032118-Unst6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG009A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153914205-1577629 Batch6_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/011_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I3_id_MSn_negative.mzML at line 21
index 334 is out of bounds for axis 0 with size 334
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_0124_190125095024.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124023357-1876383 08E10_rep_D_Ipsapironeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124023357-1876383 08E10_rep_D_Ipsapironeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pyrI_P4D12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (pyrI_P4D12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/179-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_3_P_rep_3_B-E9_1_5553.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-2-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaD_P4F9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (paaD_P4F9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_72.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_H4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_H4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/003_1016_3_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121652538-1867052 04E03_rep_B_Fenoterol_hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121652538-1867052 04E03_rep_B_Fenoterol_hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pstB_P5H4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (pstB_P5H4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124216550-1862258 03B04_rep_A_Tranylcypromine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124216550-1862258 03B04_rep_A_Tranylcypromine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088261/raw/210916_tanaka03.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000096497/peak/20201109_ProgressCurveAnalysis_GltA_set1_eff10_t3_rep1.mzML at line 689
Premature end of data in tag binary line 2872, line 2872, column 1277 (20201109_ProgressCurveAnalysis_GltA_set1_eff10_t3_rep1.mzML, line 2872)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123917882-1876331 08B09_rep_C_Ropinirole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123917882-1876331 08B09_rep_C_Ropinirole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114253377-1922890 4_H2_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114253377-1922890 4_H2_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124245661-1876497 08D05_rep_D_Diclofenac_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124245661-1876497 08D05_rep_D_Diclofenac_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/citD_P3H5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (citD_P3H5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122715762-1867551 05H01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122715762-1867551 05H01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_G8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MHB.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122959314-1875884 08C08_rep_A_Cilostazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122959314-1875884 08C08_rep_A_Cilostazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091752043-1878520 13B01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091752043-1878520 13B01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088286/raw/210924_06.mzML at line 689
Specification mandates value for attribute couAAAAAAAAAAAAAAAAAAAAAPA, line 749778, column 57 (210924_06.mzML, line 749778)
Error processing file: /data/datasets/server/MassIVE/MSV000091038/metadata/miltonsilva/Negative_samples/SM-Fo-P6_Neg.mzML at line 689
Opening and ending tag mismatch: binary line 48458 and binaryDataArray, line 48460, column 31 (SM-Fo-P6_Neg.mzML, line 48460)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_45_CNR_51.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_45_CNR_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G3_id_negative.mzML at line 21
index 249 is out of bounds for axis 0 with size 249
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112825650-1922172 4_D3_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112825650-1922172 4_D3_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222813509-1869845 01G02_rep_A_Morantel tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222813509-1869845 01G02_rep_A_Morantel tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_E9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153736746-1577547 Batch6_NCIH146_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-024.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-024.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150739190-1924569 2_H5_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150739190-1924569 2_H5_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample194_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B7_id_MSn_positive.mzML at line 21
index 627 is out of bounds for axis 0 with size 627
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100303006-1868911 06H05_rep_D_Fentiazaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100303006-1868911 06H05_rep_D_Fentiazaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101112203-1869301 07D11_rep_B_Sulfasalazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101112203-1869301 07D11_rep_B_Sulfasalazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S69.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S69.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD5_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GH3_01_11562.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_19040322_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111631501-1921552 1_D7_GAP1_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111631501-1921552 1_D7_GAP1_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090063/raw/Sammy/49_Sammy.mzML at line 689
Premature end of data in tag binary line 112180, line 112180, column 354195 (49_Sammy.mzML, line 112180)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_E3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_248.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate20/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152559792-1576976 Batch1_NCIH1395_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F1_id.mzML at line 21
index 485 is out of bounds for axis 0 with size 485
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potD_#3_P6C4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (potD_#3_P6C4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1215.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1215.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150325847-1864754 02C03_rep_B_Amoxapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150325847-1864754 02C03_rep_B_Amoxapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130550273-1877528 13D11_rep_C_Lymecyclineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130550273-1877528 13D11_rep_C_Lymecyclineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130408576-1877448 13C03_rep_B_Nandroloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130408576-1877448 13C03_rep_B_Nandroloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079466/peak/Adenocalymma imperatoris/AIR-POS.mgf at line 1048
'str' object cannot be interpreted as an integer
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/965.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165905989-2227570 Healthy3.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpK_P5A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (glpK_P5A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ6_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_4_P_rep_3_B-B4_1_5646.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101520091-1869498 07C10_rep_C_Bromperidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101520091-1869498 07C10_rep_C_Bromperidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112121224-1921800 2_F8_GAP1_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112121224-1921800 2_F8_GAP1_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purU_#1_P5B10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (purU_#1_P5B10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150238275-1864718 02F11_rep_B_Tetracycline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150238275-1864718 02F11_rep_B_Tetracycline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151001221-1865060 02C01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151001221-1865060 02C01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165815525-2227523 PAT46.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190335385-1889798 Wa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114100537-1922789 4_F1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114100537-1922789 4_F1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/grxA_#1_P4F9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (grxA_#1_P4F9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gpsA_P3F3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (gpsA_P3F3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094810/other/MZmine_Result/Positive/177_QC_26_60eV_pos_CEDIA.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151557874-1576488 Batch7_UACC62_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153859713-1577617 Batch6_DU4475_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-042.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-042.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125101789-1862792 03H09_rep_C_Lomefloxacin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125101789-1862792 03H09_rep_C_Lomefloxacin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223736703-2227615 PAT47.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151536331-1576470 Batch7_CORL88_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_E7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B7_id_MSn_positive.mzML at line 21
index 687 is out of bounds for axis 0 with size 687
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151808674-1867843 05B10_rep_C_Guanfacine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151808674-1867843 05B10_rep_C_Guanfacine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101156289-1869336 07F01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101156289-1869336 07F01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114255583-1874913 12E09_rep_A_Nilutamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114255583-1874913 12E09_rep_A_Nilutamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113037071-1922246 1_E11_IZH2_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113037071-1922246 1_E11_IZH2_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Blank_pesticide_170404190219.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lptG_#4_P3E2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (lptG_#4_P3E2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G5_id.mzML at line 21
index 553 is out of bounds for axis 0 with size 553
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151102443-1924744 3_D2_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151102443-1924744 3_D2_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_sample06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_C9_id_positive.mzML at line 21
index 333 is out of bounds for axis 0 with size 333
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHK04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_349.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-qc_high (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122508003-1867448 04B05_rep_D_Nortriptyline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122508003-1867448 04B05_rep_D_Nortriptyline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNT372_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086486/ccms_peak/peak/sample/MSplate3_dhaL_b1199_G12_platePN_rep1_COLD_GEI_0-728_497.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (MSplate3_dhaL_b1199_G12_platePN_rep1_COLD_GEI_0-728_497.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/006_1022_2_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/476-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201752732-1882069 16F10_rep_C_Besifloxacin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201752732-1882069 16F10_rep_C_Besifloxacin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_191.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_19032111_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_62.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112750757-1922141 4_C11_GPR1_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112750757-1922141 4_C11_GPR1_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_22_Blood_EtOH_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_22_Blood_EtOH_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121128365-1879337 14A06_rep_D_Sertaconazole_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121128365-1879337 14A06_rep_D_Sertaconazole_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_G7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GG11_01_11556.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GF6_01_16851.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ4_7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0002_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0002_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_63.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151042995-1924727 3_F7_SNF3_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151042995-1924727 3_F7_SNF3_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092638100-1878932 14B03_rep_B_Iopanoic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092638100-1878932 14B03_rep_B_Iopanoic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d8_288_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 59338, column 1 (SysVirol_IFT001_Cal04RG_d8_288_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 59338)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person27_plasma_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person27_plasma_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180426_ES_H3K_batch6_repD_46.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201856327-1882119 16B10_rep_D_Felbamatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201856327-1882119 16B10_rep_D_Felbamatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201417234-1877911 09B07_rep_C_Lanatoside_Cb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201417234-1877911 09B07_rep_C_Lanatoside_Cb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121919445-1867168 04E08_rep_C_Oxybutynin_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121919445-1867168 04E08_rep_C_Oxybutynin_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152149289-1576775 Batch2_MDAMB468_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Mycolicibacterium_sp__LYG016B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2G03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S79.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S79.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample084_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_132.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_G11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151018179-1924706 3_G4_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151018179-1924706 3_G4_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_50.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_50.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151910152-1576648 Batch7_NCIH1693_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/chbA_P3G6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (chbA_P3G6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151954088-1576684 Batch1_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150052851-1864156 02H02_rep_B_Erythromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150052851-1864156 02H02_rep_B_Erythromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cpdB_P3E7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (cpdB_P3E7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153026397-1577198 Batch3_BTFC905_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152547770-1868201 05D05_rep_D_Clopamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152547770-1868201 05D05_rep_D_Clopamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152316688-1576844 Batch1_NCIH1703_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_17.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_17.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/766.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202042733-1882202 16A02_rep_D_Nelfinavir_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202042733-1882202 16A02_rep_D_Nelfinavir_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H1_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201532348-1877964 09E08_rep_C_Tramadol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201532348-1877964 09E08_rep_C_Tramadol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BoseaUncultured_LYD017.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/377.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_64.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D5_id_MSn_positive.mzML at line 21
index 705 is out of bounds for axis 0 with size 705
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GG12_01_11557.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_blood_1h_POS.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer4_blood_1h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092419003-1878823 14F08_rep_A_(-)-Isoproterenol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092419003-1878823 14F08_rep_A_(-)-Isoproterenol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153853863-1577612 Batch6_NCIH1299_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102123100-1869793 07F07_rep_D_(S)-(-)-Atenolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102123100-1869793 07F07_rep_D_(S)-(-)-Atenolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122736328-1880072 15H04_rep_D_Formoterol_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122736328-1880072 15H04_rep_D_Formoterol_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D15_id_MSn_negative.mzML at line 21
index 319 is out of bounds for axis 0 with size 319
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_77.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_53_RIN_48.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_53_RIN_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151435029-1576420 Batch7_SUM149PT_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153814955-1577579 Batch6_MDAMB435S_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xanQ_P4E7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (xanQ_P4E7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417234025.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_108.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_81.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O13_id_negative.mzML at line 21
index 250 is out of bounds for axis 0 with size 250
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case100_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case100_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nanT_#2_P3H8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (nanT_#2_P3H8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES44.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100726977-1869122 07F03_rep_A_Grepafloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100726977-1869122 07F03_rep_A_Grepafloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112320891-1873634 10C04_rep_D_Medrysoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112320891-1873634 10C04_rep_D_Medrysoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417124705.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/454.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_114.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224225826-1870495 01E11_rep_D_Lidocaine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224225826-1870495 01E11_rep_D_Lidocaine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111716218-1871614 10H03_rep_B_Propidium_iodideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111716218-1871614 10H03_rep_B_Propidium_iodideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223146844-1870005 01E08_rep_B_Ticlopidine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223146844-1870005 01E08_rep_B_Ticlopidine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case70_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case70_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113041014-1922249 1_A8_IZH2_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113041014-1922249 1_A8_IZH2_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152625054-1868230 06G01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152625054-1868230 06G01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122357510-1879903 15G07_rep_C_Montelukastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122357510-1879903 15G07_rep_C_Montelukastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152049983-1867972 05H03_rep_C_Ketanserin_tartrate_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152049983-1867972 05H03_rep_C_Ketanserin_tartrate_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170127_014ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/96/f05c3e67c64fc1b59403bcab0f1130/input_file/SH7_20170127_014ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc036_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc036_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_6_B-A2_1_5634.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBsubR17_5h1a.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O8_id_MSn_positive.mzML at line 21
index 583 is out of bounds for axis 0 with size 583
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113522777-1922494 2_F3_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113522777-1922494 2_F3_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075256.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/005_Urea_Day7_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_120_2C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_C12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210923_LKM_beads_timecourse_10min_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153345265-1577356 Batch4_NCIH2126_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEE1_20EV_RA4_01_22728.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150350726-1864773 02F10_rep_C_Cefotaxime sodium saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150350726-1864773 02F10_rep_C_Cefotaxime sodium saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B2_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_012712_Pseudomonas_RW10S2.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000085480/raw/190627_Irina_OMZ_ETNP18_RerunFractions/mzML/ETNP18_Oxycline_pooled_low.mzML at line 689
PCDATA invalid Char value 26, line 134246, column 292 (ETNP18_Oxycline_pooled_low.mzML, line 134246)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD2_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113710877-1922587 2_D5_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113710877-1922587 2_D5_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/400.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_0123.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_F5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1B02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152322851-1576849 Batch2_NCIH2444_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153541706-1577451 Batch4_DU145_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control150_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control150_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_26_NOR_53.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_26_NOR_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/R24_I_ESI-.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_sample08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102104997-1869778 07G02_rep_D_Ciclopirox_ethanolamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102104997-1869778 07G02_rep_D_Ciclopirox_ethanolamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purN_P6G1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (purN_P6G1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112800915-1922150 4_D9_GPR1_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112800915-1922150 4_D9_GPR1_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123201939-1875982 08B06_rep_B_Tenatoprazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123201939-1875982 08B06_rep_B_Tenatoprazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114250576-1874909 12C05_rep_A_Metyraponeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114250576-1874909 12C05_rep_A_Metyraponeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114359428-1874965 12C06_rep_A_Urapidil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114359428-1874965 12C06_rep_A_Urapidil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151855662-1576636 Batch5_HCC1187_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B11Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_B3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/110.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw2_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_018ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/f0/de0521c0da3ceefb67612972534b18/input_file/QC_20170209_018ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_B9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemN_#3_P3E9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (hemN_#3_P3E9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121805797-1879636 15G05_rep_B_Olmesartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121805797-1879636 15G05_rep_B_Olmesartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F8_id_MSn_negative.mzML at line 21
index 298 is out of bounds for axis 0 with size 298
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_D18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_85.mzXML at line 689
Premature end of data in tag peaks line 33869, line 33873, column 7748 (20121114_85.mzXML, line 33873)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample047_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control242_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control242_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124656309-1876695 09E02_rep_A_Pranoprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124656309-1876695 09E02_rep_A_Pranoprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123249975-1876020 08A10_rep_B_Entacaponea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123249975-1876020 08A10_rep_B_Entacaponea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1074.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201309065-1877861 09A08_rep_B_Rebamipideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201309065-1877861 09A08_rep_B_Rebamipideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122922918-1880156 15C10_rep_D_Vardenafila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122922918-1880156 15C10_rep_D_Vardenafila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092259/ccms_peak/Sample0012.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltD_P4F2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (gltD_P4F2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/013_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122514114-1867453 04H03_rep_D_Flunarizine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122514114-1867453 04H03_rep_D_Flunarizine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_cc1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaU_P3A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (waaU_P3A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_133_3B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A6_id_MSn_negative_20240503180042.mzML at line 21
index 302 is out of bounds for axis 0 with size 302
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_19080521_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GB4_01_11633.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125238664-1862870 03E07_rep_C_Meclofenamic_acid_sodium_salt_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125238664-1862870 03E07_rep_C_Meclofenamic_acid_sodium_salt_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GD11_01_11678.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150040329-1864146 02D07_rep_B_Naltrexone hydrochloride dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150040329-1864146 02D07_rep_B_Naltrexone hydrochloride dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_53.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sgbE_#2_P5D12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (sgbE_#2_P5D12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152325355-1576851 Batch2_NCIH358_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yjhG_P3G3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (yjhG_P3G3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150247255-1864725 02H04_rep_B_Didanosineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150247255-1864725 02H04_rep_B_Didanosineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153750092-1577558 Batch6_OVCAR8_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152149289-1576775 Batch2_MDAMB468_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/amiC_P4E6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (amiC_P4E6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_34.mzXML at line 689
Premature end of data in tag peaks line 19215, line 19219, column 3655 (20121114_34.mzXML, line 19219)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153640521-1577500 Batch4_NCIH1563_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/entS_P4F8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (entS_P4F8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD1_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121247386-1879396 14A10_rep_D_Oxyphenbutazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121247386-1879396 14A10_rep_D_Oxyphenbutazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120959072-1879270 14A11_rep_D_Quinethazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120959072-1879270 14A11_rep_D_Quinethazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metC_P3G9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (metC_P3G9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151915984-1867896 05D02_rep_C_Chlorthalidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151915984-1867896 05D02_rep_C_Chlorthalidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114857581-1875198 12A09_rep_B_Promethazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114857581-1875198 12A09_rep_B_Promethazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD6_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/480-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rfbA_P4H6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (rfbA_P4H6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130111004-1877310 13A09_rep_B_Decamethonium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130111004-1877310 13A09_rep_B_Decamethonium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_A9_id_positive.mzML at line 21
index 379 is out of bounds for axis 0 with size 379
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130516698-1877501 13C03_rep_C_Nandrolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130516698-1877501 13C03_rep_C_Nandrolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L16_id.mzML at line 21
index 523 is out of bounds for axis 0 with size 523
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124400064-1876558 09B03_rep_A_Picrotoxinina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124400064-1876558 09B03_rep_A_Picrotoxinina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control133_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control133_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125002158-1876803 12D05_rep_C_Estroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125002158-1876803 12D05_rep_C_Estroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GF4_01_16967.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M19_id.mzML at line 21
index 541 is out of bounds for axis 0 with size 541
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201142538-1881793 16C08_rep_B_Algestone_acetophenidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201142538-1881793 16C08_rep_B_Algestone_acetophenidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130328731-1877417 13A03_rep_B_Canrenonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130328731-1877417 13A03_rep_B_Canrenonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNR698_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GD7_01_17058.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151313626-1576352 Batch7_SNB75_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007511_031618-0.01Thr3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaK_P3E5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (paaK_P3E5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125344366-1862923 03B08_rep_D_Sulfamethoxazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125344366-1862923 03B08_rep_D_Sulfamethoxazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152832073-1868328 06F01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152832073-1868328 06F01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/313.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007633_032118-0.01Thr2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control85_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control85_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114349500-1922940 4_F4_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114349500-1922940 4_F4_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123033045-1875910 08F11_rep_A_Acamprosate_calciuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123033045-1875910 08F11_rep_A_Acamprosate_calciuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHL02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114813166-1875162 12C03_rep_B_Abacavir_Sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114813166-1875162 12C03_rep_B_Abacavir_Sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084666/raw/InterSpec_SppSwarms/00657_psycma-1097.mzXML at line 88
Invalid base64-encoded string: number of data characters (7109) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165817659-2227525 PAT46.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130547873-1877526 13F09_rep_C_Alprostadilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130547873-1877526 13F09_rep_C_Alprostadilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNQ766_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000097739/peak/C3_3 MSMS neg.mzML at line 640
'selectedIonList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6H04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/10 Sept 2021/converted/210916_tanaka03.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_N15_id_MSn_negative.mzML at line 21
index 346 is out of bounds for axis 0 with size 346
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J17_id.mzML at line 21
index 562 is out of bounds for axis 0 with size 562
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MIXEE_20170127_070ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/69/e3b3412d87b2a1d3d1d480decdda10/input_file/MIXEE_20170127_070ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095819/raw/202312_213_PA07_10ppb_1uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B1_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1C02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122122572-1867266 04E03_rep_D_Fenoterol_hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122122572-1867266 04E03_rep_D_Fenoterol_hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152456938-1576924 Batch2_BXPC3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092960/raw/20221111-JC-471_HILIC_Sorghum_DDA_001_02.mzML at line 689
invalid character in attribute value, line 29174, column 159 (20221111-JC-471_HILIC_Sorghum_DDA_001_02.mzML, line 29174)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bglX_#1_P4C6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (bglX_#1_P4C6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153033221-1577203 Batch3_MIAPACA2_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190124_ES_H3K_batch15_repC_100.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sdhA_P3G4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (sdhA_P3G4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/013_CRa_H9M5_M470_Blank_04_high_pos.mzXML at line 689
Premature end of data in tag peaks line 18203, line 18207, column 40438 (013_CRa_H9M5_M470_Blank_04_high_pos.mzXML, line 18207)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201423777-1881914 16D08_rep_C_Adapaleneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201423777-1881914 16D08_rep_C_Adapaleneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pepA_P6B1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (pepA_P6B1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/726.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-8-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3A08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_C2_id_positive.mzML at line 21
index 288 is out of bounds for axis 0 with size 288
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121219241-1879375 14C01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121219241-1879375 14C01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009606_IBD200_E16_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007618_032118-Unst4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person3_Blood_NEG.mzXML at line 689
attributes construct error, line 38, column 73 (Person3_Blood_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224342677-1870556 01E06_rep_D_Naproxenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224342677-1870556 01E06_rep_D_Naproxenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113300815-1874472 11A08_rep_B_Chloropyramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113300815-1874472 11A08_rep_B_Chloropyramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/170-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113325091-1922391 1_B7_IZH2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113325091-1922391 1_B7_IZH2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_14_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_14_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_G8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_G8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114352950-1922943 4_F2_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114352950-1922943 4_F2_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case174_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case174_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124238388-1876491 08D07_rep_D_Fomepizoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124238388-1876491 08D07_rep_D_Fomepizoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_H1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121335464-1866901 04F07_rep_B_Acemetacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121335464-1866901 04F07_rep_B_Acemetacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122041568-1879754 15H05_rep_B_Rufloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122041568-1879754 15H05_rep_B_Rufloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cydX_P3D10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (cydX_P3D10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/CPV_P_rep_4_B-C6_1_5530.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_105.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_105.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087808/raw/RIGHT_SSL_EI_sleep_STER_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1919.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1919.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B1_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metE_#3_P6A8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (metE_#3_P6A8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_14_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G04P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121217880-1879374 14C01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121217880-1879374 14C01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_21_AC+_53.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/003_Ammonia_Day0_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD2_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121343112-1879437 15A09_rep_A_Mepivacaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121343112-1879437 15A09_rep_A_Mepivacaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thyA_P6F2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (thyA_P6F2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153833803-1577595 Batch6_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_blank_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224042872-1870415 01A08_rep_D_Amiloride hydrochloride dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224042872-1870415 01A08_rep_D_Amiloride hydrochloride dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152705457-1577031 Batch3_KP4_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152204619-1576787 Batch2_NCIH2172_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-8-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ROO2_50EV_RA3_01_22567.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1109.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_05_684_prot_37_IMS_18Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009470_IBD200_E8_A7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR324h1a.mzML at line 689
expected '>', line 75169, column 23 (pBlateR324h1a.mzML, line 75169)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR17_5h2a.mzML at line 689
Specification mandates value for attribute unitAJ6BP8iegT, line 99157, column 113 (pBlateR17_5h2a.mzML, line 99157)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/blank_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151950181-1576681 Batch1_HCC1806_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130546586-1877525 13F09_rep_C_Alprostadila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130546586-1877525 13F09_rep_C_Alprostadila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control230_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control230_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-044.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-044.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_7_Dorsal_skin_Ma_control_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_7_Dorsal_skin_Ma_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170127_046ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/16/7870c588e6f26473a8859eea108b15/input_file/MMW3_20170127_046ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092960/raw/HILIC_plusDDA/HILIC/20221111-JC-471_HILIC_144_01.mzML at line 689
Invalid character: Char 0x0 out of allowed range
, line 26671, column 45616 (20221111-JC-471_HILIC_144_01.mzML, line 26671)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_rerun_E2_BE2_01_12041.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3A06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HaCaT_3_RESV_20uM_POS.mzXML at line 689
attributes construct error, line 38, column 82 (HaCaT_3_RESV_20uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112100893-1873042 10G07_rep_C_Methimazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112100893-1873042 10G07_rep_C_Methimazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095819/raw/202312_212_PA06_10ppb_1uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample076_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F9_id_MSn_positive.mzML at line 21
index 483 is out of bounds for axis 0 with size 483
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153054946-1577219 Batch3_SKMES1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hD3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hD3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E10_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8A05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122803515-1875793 08D01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122803515-1875793 08D01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pdxA_P3B5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (pdxA_P3B5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009396_IBD200_E3_A11.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153238576-1868517 06A07_rep_B_Delavirdineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153238576-1868517 06A07_rep_B_Delavirdineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150639291-1924517 2_C11_RGT2_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150639291-1924517 2_C11_RGT2_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG14.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124212861-1862255 03G05_rep_A_Oxymetazoline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124212861-1862255 03G05_rep_A_Oxymetazoline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_G4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153400179-1868581 06C11_rep_B_Cisaprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153400179-1868581 06C11_rep_B_Cisaprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113006229-1922223 1_B3_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113006229-1922223 1_B3_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-020_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpA_P4H6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (atpA_P4H6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153425649-1577389 Batch4_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C15_id.mzML at line 21
index 534 is out of bounds for axis 0 with size 534
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121815722-1867118 04B08_rep_C_Retinoic_acid_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121815722-1867118 04B08_rep_C_Retinoic_acid_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153540478-1577450 Batch4_DU145_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101038451-1869274 07D04_rep_B_Norcyclobenzaprineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101038451-1869274 07D04_rep_B_Norcyclobenzaprineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125251054-1862880 03F03_rep_C_Pyrantel_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125251054-1862880 03F03_rep_C_Pyrantel_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/283.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153322044-1868551 06F05_rep_B_Linezolidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153322044-1868551 06F05_rep_B_Linezolidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc067_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc067_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150716340-1924549 2_H1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150716340-1924549 2_H1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_blank_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113403167-1922425 2_E5_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113403167-1922425 2_E5_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130823537-1877650 13B07_rep_C_Tracazolate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130823537-1877650 13B07_rep_C_Tracazolate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N4_id_MSn_positive.mzML at line 21
index 559 is out of bounds for axis 0 with size 559
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYD008A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114150704-1922834 4_A7_STE2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114150704-1922834 4_A7_STE2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201147387-1877801 09B07_rep_B_Lanatoside_Cb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201147387-1877801 09B07_rep_B_Lanatoside_Cb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123227376-1867796 05D08_rep_B_Amoxicillina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123227376-1867796 05D08_rep_B_Amoxicillina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130437001-1877470 13D05_rep_B_Cyclopenthiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130437001-1877470 13D05_rep_B_Cyclopenthiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130450874-1877481 13F05_rep_B_Sertralinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130450874-1877481 13F05_rep_B_Sertralinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201924382-1878139 09D02_rep_D_Dydrogesteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201924382-1878139 09D02_rep_D_Dydrogesteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130321166-1877411 13C04_rep_B_Dimaprit_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130321166-1877411 13C04_rep_B_Dimaprit_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C11_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100944989-1869231 07H05_rep_B_Tolazamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100944989-1869231 07H05_rep_B_Tolazamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L3_id_MSn_positive.mzML at line 21
index 551 is out of bounds for axis 0 with size 551
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00073375.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114010074-1874779 11B10_rep_D_Moxalactam_disodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114010074-1874779 11B10_rep_D_Moxalactam_disodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123036299-1867708 05H11_rep_B_Hesperidin_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123036299-1867708 05H11_rep_B_Hesperidin_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125806718-1877171 13H06_rep_A_Molindone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125806718-1877171 13H06_rep_A_Molindone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122833513-1867614 05A09_rep_A_Zoxazolaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122833513-1867614 05A09_rep_A_Zoxazolaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/g1p_malP_P6B1_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024912 (g1p_malP_P6B1_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113858067-1874721 11A03_rep_D_Methazolamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113858067-1874721 11A03_rep_D_Methazolamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202131086-1878238 09C07_rep_D_Nisoldipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202131086-1878238 09C07_rep_D_Nisoldipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150344073-1864768 02F07_rep_C_Astemizolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150344073-1864768 02F07_rep_C_Astemizolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L14_id_MSn_positive.mzML at line 21
index 362 is out of bounds for axis 0 with size 362
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124306688-1862298 03F06_rep_A_Mefexamide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124306688-1862298 03F06_rep_A_Mefexamide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E22_id_negative.mzML at line 21
index 240 is out of bounds for axis 0 with size 240
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153642316-1868711 06C03_rep_C_Zotepineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153642316-1868711 06C03_rep_C_Zotepineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150839511-1924621 2_B8_RGT2_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150839511-1924621 2_B8_RGT2_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201956632-1882166 16G04_rep_D_Tolterodine_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201956632-1882166 16G04_rep_D_Tolterodine_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151150642-1576283 Batch5_LUDLU1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130750458-1877623 13E11_rep_C_Lodoxamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130750458-1877623 13E11_rep_C_Lodoxamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B12_id_negative.mzML at line 21
index 275 is out of bounds for axis 0 with size 275
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150411615-1864789 02H01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150411615-1864789 02H01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_A5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C1_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201220_LKM_5to1_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GA11_01_17144.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153858499-1577616 Batch6_DU4475_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB1B13.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124248383-1862283 03B02_rep_A_Tranexamic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124248383-1862283 03B02_rep_A_Tranexamic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thyA_P6F2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (thyA_P6F2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150806480-1864971 02E03_rep_D_Amfepramone hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150806480-1864971 02E03_rep_D_Amfepramone hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112612445-1922054 4_C1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112612445-1922054 4_C1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122241586-1879845 15H08_rep_C_Rivastigmineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122241586-1879845 15H08_rep_C_Rivastigmineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/XYT-34d.mzXML at line 689
Premature end of data in tag peaks line 2867, line 2871, column 7671 (XYT-34d.mzXML, line 2871)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007573_031718-5CRP3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165731456-2227483 PAT47.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153952080-1577661 Batch7_UO31_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_QBM1551.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170125_027EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b0/9ae4f3b3b04c3f863e6dbd0543ce3a/input_file/MMW4_20170125_027EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124439149-1876590 09B11_rep_A_Avermectin_B1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124439149-1876590 09B11_rep_A_Avermectin_B1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201124942-1877785 09D11_rep_B_Warfarinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201124942-1877785 09D11_rep_B_Warfarinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Honokiol_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100336564-1868937 06F07_rep_D_Meclocycline_sulfosalicylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100336564-1868937 06F07_rep_D_Meclocycline_sulfosalicylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113224827-1874443 11F07_rep_B_Tolmetin_sodium_salt_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113224827-1874443 11F07_rep_B_Tolmetin_sodium_salt_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085847/raw/andrem1/76_StdMix_13_Neg.mzML at line 689
Opening and ending tag mismatch: scan line 2909 and spectrum, line 2939, column 20 (76_StdMix_13_Neg.mzML, line 2939)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121439742-1866949 04E11_rep_B_Sulfinpyrazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121439742-1866949 04E11_rep_B_Sulfinpyrazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125903364-1863185 04E02_rep_A_Fludrocortisone_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125903364-1863185 04E02_rep_A_Fludrocortisone_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_A6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C8_id_MSn_negative.mzML at line 21
index 318 is out of bounds for axis 0 with size 318
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person01_RBC_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Person01_RBC_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180426_ES_H3K_batch6_repD_47.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_5_1_rep_1_B-D2_1_5535.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201440546-1877928 09F10_rep_C_Hexestrola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201440546-1877928 09F10_rep_C_Hexestrola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112244905-1873605 10E11_rep_D_Isopropamide_iodidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112244905-1873605 10E11_rep_D_Isopropamide_iodidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153554923-1577462 Batch4_184A1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case214_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case214_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_07_liver_control_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_07_liver_control_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_192_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153426866-1577390 Batch4_NCIH1666_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C11_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092415088-1878820 14B02_rep_A_Moricizine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092415088-1878820 14B02_rep_A_Moricizine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170207_023EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/85/b1e2284c442ac0f9c21d17c3350dff/input_file/SH7_20170207_023EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201927062-1878141 09F02_rep_D_Tylosinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201927062-1878141 09F02_rep_D_Tylosinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200645755-1881574 16F03_rep_A_Indinavir_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200645755-1881574 16F03_rep_A_Indinavir_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/luxS_P3H12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (luxS_P3H12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB3A10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152237381-1576813 Batch2_NCIH2085_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_64_NOR_49.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_64_NOR_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115034523-1875277 12E03_rep_B_Thioperamide_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115034523-1875277 12E03_rep_B_Thioperamide_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200535780-1881522 16B07_rep_A_Tegafurb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200535780-1881522 16B07_rep_A_Tegafurb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170125_050EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/11/a88b547fac5343d546cbc535aca9de/input_file/SH9_20170125_050EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fadE_#1_P4H2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (fadE_#1_P4H2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L70cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L70cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124356389-1876555 09F07_rep_A_Ethotoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124356389-1876555 09F07_rep_A_Ethotoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/484-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw4_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F4_id_MSn_positive.mzML at line 21
index 389 is out of bounds for axis 0 with size 389
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_120_2A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_16092759_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087872/ccms_peak/MassIVE - Matthaei + Herbarium datasets/Veronicastrum-virginicum-leaf-nBuOH.mzML at line 689
Premature end of data in tag spectrumList line 72, line 151777, column 1 (Veronicastrum-virginicum-leaf-nBuOH.mzML, line 151777)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A3_id_MSn_positive_20240408140104.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/443.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_45_RIN_15.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_45_RIN_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130517976-1877502 13C03_rep_C_Nandroloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130517976-1877502 13C03_rep_C_Nandroloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_82.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_120_3C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB4G04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112749609-1922140 4_C11_GPR1_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112749609-1922140 4_C11_GPR1_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD4_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170125_046EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/7e/fe9dee84d7028bd8827d8006c84651/input_file/SH8_20170125_046EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224023114-1870400 01B06_rep_D_Heptaminol hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224023114-1870400 01B06_rep_D_Heptaminol hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdsA_#5_P3C12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (kdsA_#5_P3C12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151451629-1576434 Batch6_NCIH1155_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/69-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087427/peak/03-17-2021-RV-top-peaklist-reconvert/636_Group13_113dpi_RV_top_54_Y_E6_P134.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200934304-1881698 16F05_rep_A_Histamine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200934304-1881698 16F05_rep_A_Histamine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_D8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/plsY_P3G12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (plsY_P3G12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_qc_low (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F21_id_MSn_negative.mzML at line 21
index 340 is out of bounds for axis 0 with size 340
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/443.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28022021_Batch02_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111809200-1872041 10A05_rep_C_Sulfamethoxypyridazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111809200-1872041 10A05_rep_C_Sulfamethoxypyridazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125209014-1876897 12E07_rep_C_Idazoxan_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125209014-1876897 12E07_rep_C_Idazoxan_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_042EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b6/8b31dc8b5468873dcf1ee7838b5216/input_file/QC_20170207_042EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Serratia_proteamaculans_04.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNQ525_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/puuB_P3A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (puuB_P3A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092625482-1878922 14C05_rep_B_Meprylcaine_hydrochloride_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092625482-1878922 14C05_rep_B_Meprylcaine_hydrochloride_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125419693-1862952 03A01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125419693-1862952 03A01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190353676-1889812 blanka.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GD6_01_17182.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150010658-1864124 02F07_rep_B_Astemizoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150010658-1864124 02F07_rep_B_Astemizoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153221359-1577288 Batch4_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201605589-1877989 09D09_rep_C_Tazobactamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201605589-1877989 09D09_rep_C_Tazobactamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112647266-1922085 4_D11_GPR1_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112647266-1922085 4_D11_GPR1_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151554307-1576485 Batch7_NCIH226_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152024640-1576708 Batch1_NCIH2073_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124219154-1862260 03H05_rep_A_Chlorphensin_carbamateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124219154-1862260 03H05_rep_A_Chlorphensin_carbamateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dauA_P3E11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (dauA_P3E11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_B4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tdcB_P3A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (tdcB_P3A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122050835-1879761 15A03_rep_B_Anastrozoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122050835-1879761 15A03_rep_B_Anastrozoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_G5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control126_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control126_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/211-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample006.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111353538-1871458 10F10_rep_B_Zomepirac_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111353538-1871458 10F10_rep_B_Zomepirac_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081457/ccms_peak/1704_Linear_calibration_mzML/Mix12345/Swabs/Blank_pesticide_Swabs_170403195324.mzML at line 689
Premature end of data in tag binary line 39909, line 39909, column 46666 (Blank_pesticide_Swabs_170403195324.mzML, line 39909)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ4_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/421.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case95_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case95_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2C05P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hB3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hB3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124712881-1862609 03H11_rep_B_Proglumideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124712881-1862609 03H11_rep_B_Proglumideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114400920-1922950 4_E5_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114400920-1922950 4_E5_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD4_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123650008-1876213 08F11_rep_C_Acamprosate_calciumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123650008-1876213 08F11_rep_C_Acamprosate_calciumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123326019-1876049 08G11_rep_B_Dimethisoquin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123326019-1876049 08G11_rep_B_Dimethisoquin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G22_id.mzML at line 21
index 548 is out of bounds for axis 0 with size 548
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/457.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/anmK_#4_P3B1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (anmK_#4_P3B1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/723.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121906852-1867158 04C11_rep_C_Fendiline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121906852-1867158 04C11_rep_C_Fendiline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/360.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/citF_P4H10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (citF_P4H10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C22_id_MSn_positive.mzML at line 21
index 598 is out of bounds for axis 0 with size 598
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person29_blood_elder_POS.mzXML at line 689
attributes construct error, line 41, column 83 (Person29_blood_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S48.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S48.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1E06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_G12_id_negative.mzML at line 21
index 263 is out of bounds for axis 0 with size 263
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190123_ES_H3K_batch15_repA_170.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125658894-1863081 03B02_rep_D_Tranexamic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125658894-1863081 03B02_rep_D_Tranexamic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113700840-1874627 11D08_rep_C_Carbenoxolone_disodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113700840-1874627 11D08_rep_C_Carbenoxolone_disodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151241283-1576325 Batch5_NCIH446_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_115_1A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5T3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5T3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_27_AC+_53.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007607_032118-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200541382-1881526 16E07_rep_A_Enalaprilat_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200541382-1881526 16E07_rep_A_Enalaprilat_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control150_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control150_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybiO_P3E1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (ybiO_P3E1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132938127-1733914 1fb Skin 1 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122814262-1880102 15E09_rep_D_Clarithromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122814262-1880102 15E09_rep_D_Clarithromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114201275-1874869 11B11_rep_D_Aminophyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114201275-1874869 11B11_rep_D_Aminophyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_low (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125442640-1877014 12A10_rep_D_Diacereinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125442640-1877014 12A10_rep_D_Diacereinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR324h2a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 222573, column 273 (pMIBSDR324h2a.mzML, line 222573)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151621799-1576508 Batch7_SKMES1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/araD_P4D4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (araD_P4D4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GG6_01_12168.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125851799-1877206 13F03_rep_A_Trapidilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125851799-1877206 13F03_rep_A_Trapidilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_63.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_63.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114022470-1874789 11E10_rep_D_Clinafloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114022470-1874789 11E10_rep_D_Clinafloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_H7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_H4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/CORN_AAW5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-faux (5).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102035752-1869754 07H09_rep_D_Gliclazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102035752-1869754 07H09_rep_D_Gliclazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person19_blood_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 83 (Person19_blood_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151624077-1576510 Batch7_UACC62_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_59.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/415.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150331947-1924358 1_F3_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150331947-1924358 1_F3_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_45_RIN_49.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_45_RIN_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153858499-1577616 Batch6_DU4475_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgpB_#4_P5G6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (pgpB_#4_P5G6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201725541-1882048 16F02_rep_C_Irbesartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201725541-1882048 16F02_rep_C_Irbesartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152808891-1577084 Batch3_RERFLCA1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_cc6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/CORN_AD3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124211317-1876469 08A06_rep_D_Atropine_sulfate_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124211317-1876469 08A06_rep_D_Atropine_sulfate_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H11_id_MSn_positive.mzML at line 21
index 452 is out of bounds for axis 0 with size 452
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153750092-1577558 Batch6_OVCAR8_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113802606-1874676 11G01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113802606-1874676 11G01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153812020-1868783 06A08_rep_C_Adamantamine_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153812020-1868783 06A08_rep_C_Adamantamine_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/867.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_256.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD4_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GB10_01_11474.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB4A01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153740841-1868758 06A03_rep_C_Haloprogina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153740841-1868758 06A03_rep_C_Haloprogina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153459987-1577417 Batch5_HCT116_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample016_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111430698-1871487 10D08_rep_B_Chlorotrianisenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111430698-1871487 10D08_rep_B_Chlorotrianisenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112625224-1874166 11F06_rep_A_Beclomethasone_dipropionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112625224-1874166 11F06_rep_A_Beclomethasone_dipropionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115039523-1875281 12E08_rep_B_Quinapril_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115039523-1875281 12E08_rep_B_Quinapril_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E7_id_negative.mzML at line 21
index 262 is out of bounds for axis 0 with size 262
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124710356-1862607 03G10_rep_B_Nefopam_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124710356-1862607 03G10_rep_B_Nefopam_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224124649-1870447 01E04_rep_D_Betazole hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224124649-1870447 01E04_rep_D_Betazole hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_42.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_42.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_M11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_B3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201436517-1877925 09F01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201436517-1877925 09F01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145854416-1864063 02G02_rep_A_Verapamil hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145854416-1864063 02G02_rep_A_Verapamil hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlD2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraControlD2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165917048-2227580 PAT40.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125327042-1862909 03H11_rep_C_Proglumideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125327042-1862909 03H11_rep_C_Proglumideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111921023-1921697 2_F5_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111921023-1921697 2_F5_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GD5_01_11967.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223025925-1869944 01D07_rep_A_Troleandomycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223025925-1869944 01D07_rep_A_Troleandomycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124250869-1862285 03C02_rep_A_Ampyronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124250869-1862285 03C02_rep_A_Ampyronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_A3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1127.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112050976-1921774 2_F2_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112050976-1921774 2_F2_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151933992-1576668 Batch1A_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A19_id_MSn_positive.mzML at line 21
index 481 is out of bounds for axis 0 with size 481
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroG_#1_P5C10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (aroG_#1_P5C10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G01P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222735758-1869816 01H07_rep_A_Dibucaineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222735758-1869816 01H07_rep_A_Dibucaineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170209_052ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/74/b303d77257bf154d5c21148a25336c/input_file/SH10_20170209_052ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case155_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case155_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/treC_P3G9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (treC_P3G9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H20_id.mzML at line 21
index 527 is out of bounds for axis 0 with size 527
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2E03P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123316105-1876041 08G10_rep_B_Aniracetamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123316105-1876041 08G10_rep_B_Aniracetamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151431435-1924924 4_E5_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151431435-1924924 4_E5_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152144359-1576771 Batch2_BT20_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_08P_A3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125733375-1863110 04A04_rep_A_Bufexamaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125733375-1863110 04A04_rep_A_Bufexamaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150456804-1864824 02B02_rep_C_Khellina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150456804-1864824 02B02_rep_C_Khellina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GE8_01_11692.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/150_123.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084275/peak/00066_psycac-C2.mzXML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (00066_psycac-C2.mzXML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113624653-1922547 2_B9_IZH2_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113624653-1922547 2_B9_IZH2_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124856988-1876754 12H11_rep_C_Aminocaproic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124856988-1876754 12H11_rep_C_Aminocaproic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150740594-1864951 02C08_rep_C_Pioglitazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150740594-1864951 02C08_rep_C_Pioglitazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_06_leg_muscle_RESV_oral_POS.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_06_leg_muscle_RESV_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201600511-1881984 16E11_rep_C_Cefpodoxime_proxetilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201600511-1881984 16E11_rep_C_Cefpodoxime_proxetilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100548777-1869042 07G06_rep_A_Tetramisole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100548777-1869042 07G06_rep_A_Tetramisole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_112.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123340505-1876061 08E10_rep_B_Ipsapironeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123340505-1876061 08E10_rep_B_Ipsapironeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/758.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092456057-1878852 14A09_rep_B_Piperacetazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092456057-1878852 14A09_rep_B_Piperacetazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121242020-1879392 14D01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121242020-1879392 14D01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD1_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/selB_P4G5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (selB_P4G5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170127_059ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/92/52d9f5a192ef0144efb5fa0341c205/input_file/SH7_20170127_059ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1350.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1350.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28022021_Batch02_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151938819-1576672 Batch1_HCC1395_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.cat_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/25.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114220855-1922861 4_D5_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114220855-1922861 4_D5_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093005160-1879094 14G10_rep_C_Rifabutina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093005160-1879094 14G10_rep_C_Rifabutina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/g3pe_ugpQ_P5C9_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 634, column 10009088 (g3pe_ugpQ_P5C9_Aquity_neg.mzXML, line 634)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152916418-1868363 06D06_rep_A_Cyclosporin_Ab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152916418-1868363 06D06_rep_A_Cyclosporin_Ab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113008925-1922225 1_C5_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113008925-1922225 1_C5_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample001_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153648843-1577507 Batch4_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210110_AD_25.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007565_031718-5CRP1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100738185-1869131 07E07_rep_A_Ethionamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100738185-1869131 07E07_rep_A_Ethionamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_3_B_rep_2_B-B5_1_5519.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113236729-1922349 1_E3_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113236729-1922349 1_E3_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224209128-1870482 01E03_rep_D_Moxisylyte hydrochorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224209128-1870482 01E03_rep_D_Moxisylyte hydrochorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/632.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lplA_#1_P5A5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (lplA_#1_P5A5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114507170-1875020 12C07_rep_A_Fluspirilena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114507170-1875020 12C07_rep_A_Fluspirilena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180625_ES_H3K_bacth8_repA_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ4_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E7_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_74.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7A04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150918477-1865027 02G11_rep_D_Dihydroergotamine tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150918477-1865027 02G11_rep_D_Dihydroergotamine tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170207_014EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ab/aae19d2c0ad13206e50ebda9e78236/input_file/SH9_20170207_014EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121957415-1879720 15F02_rep_B_Topotecana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121957415-1879720 15F02_rep_B_Topotecana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082795/ccms_peak/raw/MTBLS428/mtab_VentDOM_tsq_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082795/ccms_peak/raw/MTBLS428/mtab_VentDOM_tsq_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151304132-1576344 Batch6_NCIH1155_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/377.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112728364-1874216 11E10_rep_A_Clinafloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112728364-1874216 11E10_rep_A_Clinafloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081776.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093133684-1879159 14B02_rep_C_Moricizine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093133684-1879159 14B02_rep_C_Moricizine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std b 030a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD6_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151553105-1576484 Batch7_NCIH226_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223911541-2227697 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_115_3B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151553105-1576484 Batch7_NCIH226_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0033_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112759493-1874241 11C02_rep_A_Azlocillin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112759493-1874241 11C02_rep_A_Azlocillin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151345831-1576379 Batch6_NCIH2171_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223925247-1870356 01B03_rep_C_Benzonatateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223925247-1870356 01B03_rep_C_Benzonatateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A22_id_MSn_positive.mzML at line 21
index 618 is out of bounds for axis 0 with size 618
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlich1001R324h1a.mzML at line 88
Invalid base64-encoded string: number of data characters (3457) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124331033-1876534 09F08_rep_A_3-alpha-Hydroxy-5-beta-androstan-17-onea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124331033-1876534 09F08_rep_A_3-alpha-Hydroxy-5-beta-androstan-17-onea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152602172-1868212 05F11_rep_D_Clebopride_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152602172-1868212 05F11_rep_D_Clebopride_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0030_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0030_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_16092759_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114058263-1922787 4_F11_STE2_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114058263-1922787 4_F11_STE2_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dosC_P4D6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (dosC_P4D6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG06B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7E12_160604090743.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/134-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153243569-1577306 Batch4_SW780_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122532569-1879976 15F06_rep_C_Losartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122532569-1879976 15F06_rep_C_Losartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6F09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100745847-1869137 07B03_rep_A_Nitrofurala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100745847-1869137 07B03_rep_A_Nitrofurala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113937755-1874753 11D06_rep_D_Zolmitriptanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113937755-1874753 11D06_rep_D_Zolmitriptanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-026_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_F5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_F5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151922042-1867901 05G04_rep_C_Nicardipine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151922042-1867901 05G04_rep_C_Nicardipine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082735/ccms_peak/ST000664/EX00347-lipidomics/Raw data/NEG/BATCH1/20150318_Pooled.mzXML at line 689
Opening and ending tag mismatch: peaks line 29084 and msRun, line 53213, column 11 (20150318_Pooled.mzXML, line 53213)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample183.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/62-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person19_blood_elder_POS.mzXML at line 689
attributes construct error, line 41, column 83 (Person19_blood_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F7_id_MSn_positive.mzML at line 21
index 474 is out of bounds for axis 0 with size 474
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201403762-1881899 16F04_rep_B_Terbinafinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201403762-1881899 16F04_rep_B_Terbinafinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094443/ccms_peak/All Egg Mass/2A5E_MSMS.mzML at line 689
Premature end of data in tag indexedmzML line 2, line 43161, column 1 (2A5E_MSMS.mzML, line 43161)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224228355-1870497 01G02_rep_D_Morantel tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224228355-1870497 01G02_rep_D_Morantel tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125428404-1862959 03B07_rep_D_Iproniazide_phosphateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125428404-1862959 03B07_rep_D_Iproniazide_phosphateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A19_id_MSn_positive_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/CPV_B_rep_2_B-A7_1_5826.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3G04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153944806-1577655 Batch6_NCIH146_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d3_295_lipid__Neg_17Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 34207, column 1 (SysVirol_IFL001_Cal04RG_d3_295_lipid__Neg_17Sep13_13-07-01.mzXML, line 34207)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d8_277_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag peaks line 45400, line 45404, column 3564 (SysVirol_IFT001_1918_d8_277_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 45404)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152209713-1576791 Batch2_NCIH522_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5D09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ulaC_P3F10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ulaC_P3F10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_091a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_G6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074312.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD4_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEP1_50EV_RA4_01_22659.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150128749-1864184 02C11_rep_B_Oxandroloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150128749-1864184 02C11_rep_B_Oxandroloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124516423-1862400 03D10_rep_A_Prilocaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124516423-1862400 03D10_rep_A_Prilocaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_P_E2E3_AD_31Jan18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-027.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-027.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD6_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152227370-1576805 Batch1_HX147_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151515736-1924961 4_C8_SNF3_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151515736-1924961 4_C8_SNF3_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A7_black_P1-A-8_01_22959.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121631638-1879564 15E07_rep_A_Sparfloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121631638-1879564 15E07_rep_A_Sparfloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD1_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/28_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152241134-1868059 05E04_rep_D_Colchicineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152241134-1868059 05E04_rep_D_Colchicineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1419.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1419.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114237075-1874898 11E06_rep_D_Amiprilose_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114237075-1874898 11E06_rep_D_Amiprilose_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_71_NOR_50.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_71_NOR_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1075.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_A2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122016801-1879735 15A02_rep_B_Buspirone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122016801-1879735 15A02_rep_B_Buspirone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101435913-1869464 07A03_rep_C_Cefotiam_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101435913-1869464 07A03_rep_C_Cefotiam_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_F3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_RW10S1.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgl_#2_P5D1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (pgl_#2_P5D1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079598/ccms_peak/AMG_UKG/barcodes_AG_US_UK.docx at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S05_0126_190127173140.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/018_CRa_H9M5_M470_Blank_05_low_pos.mzXML at line 689
Premature end of data in tag peaks line 16132, line 16136, column 7671 (018_CRa_H9M5_M470_Blank_05_low_pos.mzXML, line 16136)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101032126-1869269 07D01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101032126-1869269 07D01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1212.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1212.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151940054-1576673 Batch1_HCC1395_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4T2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4T2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/moaA_P5C1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (moaA_P5C1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_B2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_H3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_H3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_151.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYB009.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151229204-1576315 Batch5_MALME3M_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224337619-1870552 01G03_rep_D_Homatropine hydrobromide (R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224337619-1870552 01G03_rep_D_Homatropine hydrobromide (R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150915935-1865025 02B11_rep_D_Nocodazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150915935-1865025 02B11_rep_D_Nocodazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F12_id_MSn_positive.mzML at line 21
index 401 is out of bounds for axis 0 with size 401
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112658154-1874192 11G05_rep_A_Methylhydantoin-5-(D)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112658154-1874192 11G05_rep_A_Methylhydantoin-5-(D)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_M22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dtpD_P6D2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (dtpD_P6D2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111918427-1921695 2_C2_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111918427-1921695 2_C2_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hC1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hC1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD5_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114827844-1875174 12G11_rep_B_Stavudinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114827844-1875174 12G11_rep_B_Stavudinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_F2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101107063-1869297 07F06_rep_B_Methoxamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101107063-1869297 07F06_rep_B_Methoxamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EBM014.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150615429-1864885 02F06_rep_C_Methotrexateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150615429-1864885 02F06_rep_C_Methotrexateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089590/raw/Sample/GN-01-G.mzML at line 689
Specification mandates value for attribute accessigTDZ9rGZFGQPVC, line 469165, column 52 (GN-01-G.mzML, line 469165)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201815924-1878087 09B05_rep_D_Benfotiamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201815924-1878087 09B05_rep_D_Benfotiamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/DEX-plasma-S8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H7_id_negative.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222832389-1869859 01A07_rep_A_Isoflupredone acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222832389-1869859 01A07_rep_A_Isoflupredone acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I23_id.mzML at line 21
index 535 is out of bounds for axis 0 with size 535
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145811784-1864029 02C04_rep_A_Cyproheptadine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145811784-1864029 02C04_rep_A_Cyproheptadine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/coaD_P5H4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (coaD_P5H4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202416661-1878369 10H03_rep_A_Propidium_iodideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202416661-1878369 10H03_rep_A_Propidium_iodideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092627/ccms_peak/Raw_Spectrum_Files/ALZ_FCX_P_E2E3_C_02Feb18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170209_027ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/d6/19370759b7f6084f1c4b3fcae203fc/input_file/MMW6_20170209_027ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA19.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150223940-1864707 02G01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150223940-1864707 02G01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/19072021_Batch07_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_G3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122155992-1879810 15A10_rep_C_Rifaximina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122155992-1879810 15A10_rep_C_Rifaximina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H10_id_MSn_negative.mzML at line 21
index 322 is out of bounds for axis 0 with size 322
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151040577-1924725 3_B2_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151040577-1924725 3_B2_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_132.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GB8_01_11472.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4D06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_plasma_0h_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer3_plasma_0h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202032335-1878192 09H08_rep_D_Finasteridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202032335-1878192 09H08_rep_D_Finasteridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quercetin_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD4_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD4_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083595/ccms_peak/SS5.mzML at line 689
Premature end of data in tag binary line 360112, line 360112, column 4306 (SS5.mzML, line 360112)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100337845-1868938 06F07_rep_D_Meclocycline_sulfosalicylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100337845-1868938 06F07_rep_D_Meclocycline_sulfosalicylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153859713-1577617 Batch6_DU4475_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150715094-1864931 02C10_rep_C_Dizocilpine maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150715094-1864931 02C10_rep_C_Dizocilpine maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124817289-1862661 03B03_rep_B_Etofyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124817289-1862661 03B03_rep_B_Etofyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124038718-1876395 08H07_rep_D_Penciclovirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124038718-1876395 08H07_rep_D_Penciclovirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112440087-1921974 3_H9_GPR1_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112440087-1921974 3_H9_GPR1_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L8_id_MSn_positive.mzML at line 21
index 756 is out of bounds for axis 0 with size 756
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_E11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A15_id_MSn_positive.mzML at line 21
index 676 is out of bounds for axis 0 with size 676
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_34_NOR_20.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_34_NOR_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhaT_#1_P4E8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (rhaT_#1_P4E8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_21_Liver_EtOH_control_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_21_Liver_EtOH_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fucP_P4E6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (fucP_P4E6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7E07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121500337-1866965 04F02_rep_B_Dantrolene_sodium_salt_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121500337-1866965 04F02_rep_B_Dantrolene_sodium_salt_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125328929-1876958 12G05_rep_D_Phenoxybenzamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125328929-1876958 12G05_rep_D_Phenoxybenzamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152855337-1868346 06H11_rep_A_Closantela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152855337-1868346 06H11_rep_A_Closantela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101620025-1869545 07H11_rep_C_Prenylamine_lactatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101620025-1869545 07H11_rep_C_Prenylamine_lactatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122600227-1867490 05C06_rep_A_Clenbuterol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122600227-1867490 05C06_rep_A_Clenbuterol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152242438-1868060 05F10_rep_D_Nefazodone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152242438-1868060 05F10_rep_D_Nefazodone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122822081-1880108 15D09_rep_D_Granisetrona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122822081-1880108 15D09_rep_D_Granisetrona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100606171-1869056 07B04_rep_A_Omeprazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100606171-1869056 07B04_rep_A_Omeprazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_A11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_A11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_19090114_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113728557-1874649 11A10_rep_C_Dichlorphenamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113728557-1874649 11A10_rep_C_Dichlorphenamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_E8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_133_1B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150938011-1924671 2_G7_RGT2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150938011-1924671 2_G7_RGT2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082728/ccms_peak/ST000661/EX00264-lipidomics/Raw data/POS/20140730_Test.mzXML at line 689
Extra content at the end of the document, line 58240, column 1 (20140730_Test.mzXML, line 58240)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_214.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_A9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD5_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153242346-1577305 Batch4_SW780_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101917408-1869690 07B05_rep_D_Propylthiouracilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101917408-1869690 07B05_rep_D_Propylthiouracilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124949013-1876793 12A03_rep_C_Bemegrideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124949013-1876793 12A03_rep_C_Bemegrideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A9_id_MSn_positive.mzML at line 21
index 729 is out of bounds for axis 0 with size 729
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113000258-1874335 11C11_rep_B_Ethaverine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113000258-1874335 11C11_rep_B_Ethaverine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223855457-2227684 PAT48.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088872/raw/AFN13.mzXML at line 255
Error -3 while decompressing data: invalid stored block lengths
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2A12_160526150910.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152356492-1868116 05F06_rep_D_Methiothepin_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152356492-1868116 05F06_rep_D_Methiothepin_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009447_IBD200_E6_B12.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_F2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Pool_8_B-A2_1_5528.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222845606-1869869 01G09_rep_A_Isoxsuprine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222845606-1869869 01G09_rep_A_Isoxsuprine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2B05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223339139-1870090 01F08_rep_B_Benoxinate hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223339139-1870090 01F08_rep_B_Benoxinate hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125732715-1877145 13H08_rep_A_Zalcitabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125732715-1877145 13H08_rep_A_Zalcitabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control140_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control140_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130012951-1863243 04C09_rep_A_Vinpocetineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130012951-1863243 04C09_rep_A_Vinpocetineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G08Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/abgT_P3E8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (abgT_P3E8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_A5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152239812-1868058 05E04_rep_D_Colchicinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152239812-1868058 05E04_rep_D_Colchicinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130857246-1877677 13G08_rep_C_Tocainide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130857246-1877677 13G08_rep_C_Tocainide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113608106-1922533 2_E9_IZH2_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113608106-1922533 2_E9_IZH2_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125935803-1877240 13E02_rep_A_Alfadolone_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125935803-1877240 13E02_rep_A_Alfadolone_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/037_CRa_H9M5_M470_Blank_09_high_pos.mzXML at line 689
Premature end of data in tag peaks line 20711, line 20715, column 24053 (037_CRa_H9M5_M470_Blank_09_high_pos.mzXML, line 20715)
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/Alb-PDI-plasma-8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202555054-1878446 10D03_rep_A_Phenazopyridine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202555054-1878446 10D03_rep_A_Phenazopyridine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_C9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uhpT_#1_P4E12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (uhpT_#1_P4E12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153025097-1577197 Batch3_NCIH460DNP53_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GG4_01_12166.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person02_RBC_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Person02_RBC_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0043_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0043_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_low (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/icd_P5G12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (icd_P5G12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7A12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224151189-1870468 01H02_rep_D_Todralazine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224151189-1870468 01H02_rep_D_Todralazine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-045_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET65.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET65.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112151274-1921826 3_A7_GPR1_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112151274-1921826 3_A7_GPR1_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_54.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8D09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124143797-1876447 08B02_rep_D_Tetracaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124143797-1876447 08B02_rep_D_Tetracaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A2_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample063.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O14_id_MSn_negative.mzML at line 21
index 322 is out of bounds for axis 0 with size 322
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_012712_Pseudomonas_BW11P2.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/158-4_MsMs_25min_50eV_GE6_01_4139.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Positive_Veh_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_118.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113108526-1874383 11G01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113108526-1874383 11G01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/042_CRa_H9M5_M470_Pool_06_low_pos.mzXML at line 689
Premature end of data in tag peaks line 30477, line 30481, column 24054 (042_CRa_H9M5_M470_Pool_06_low_pos.mzXML, line 30481)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_C2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125142865-1876877 12A05_rep_C_Megluminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125142865-1876877 12A05_rep_C_Megluminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_ISP2_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223158601-1870014 01H10_rep_B_Diphemanil methylsulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223158601-1870014 01H10_rep_B_Diphemanil methylsulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153907071-1577623 Batch7_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD4_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_131b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_G3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111611675-1871564 10D04_rep_B_Demeclocycline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111611675-1871564 10D04_rep_B_Demeclocycline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/BL_black_P1-A-5_01_22956.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/blank_8_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atoB_P4C4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (atoB_P4C4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145644439-1863958 02B02_rep_A_Khellinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145644439-1863958 02B02_rep_A_Khellinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100657767-1869098 07E06_rep_A_Rifampicinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100657767-1869098 07E06_rep_A_Rifampicinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kbaZ_P3C12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (kbaZ_P3C12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603154002763-1577670 Batch6_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mltD_P3C2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (mltD_P3C2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/BeautyProducts_Vol4/BP6_01_17298.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083207.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009590_IBD200_E15_B6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_blank_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153107426-1868446 06D11_rep_B_Epiandrosteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153107426-1868446 06D11_rep_B_Epiandrosteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125318368-1862902 03D06_rep_C_Asenapine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125318368-1862902 03D06_rep_C_Asenapine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GE10_01_17201.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223028629-1869946 01H10_rep_A_Diphemanil methylsulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223028629-1869946 01H10_rep_A_Diphemanil methylsulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080030/ccms_peak/Forensic_study_80_volunteers/Forensic_Hands_mzXML/Forensic_Hands_plate_2_mzXML/.DS_Store at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202206176-1882267 16H04_rep_D_Raltitrexeda.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202206176-1882267 16H04_rep_D_Raltitrexeda.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122950689-1867675 05A03_rep_B_Alfuzosin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122950689-1867675 05A03_rep_B_Alfuzosin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/10 Sept 2021/converted/210916_tanaka11.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Methylobacterium_LYG010C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case157_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case157_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/011_20uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dsdA_#1_P5F9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (dsdA_#1_P5F9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G3_id_MSn_positive.mzML at line 21
index 424 is out of bounds for axis 0 with size 424
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170207_027EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/0d/95531059ab2d9e8be41bfa4dec2683/input_file/SH8_20170207_027EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_94.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_19071524_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151452545-1924942 4_A9_SNF3_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151452545-1924942 4_A9_SNF3_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101137435-1869321 07E07_rep_B_Ethionamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101137435-1869321 07E07_rep_B_Ethionamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130117468-1863296 04C08_rep_A_Clotrimazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130117468-1863296 04C08_rep_A_Clotrimazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113623975-1874597 11E10_rep_C_Clinafloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113623975-1874597 11E10_rep_C_Clinafloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190308705-1889778 Wa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-cc1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET132.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET132.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR17_5h3a.mzML at line 689
Opening and ending tag mismatch: binary line 82054 and spectrum, line 82082, column 20 (pMIBSDR17_5h3a.mzML, line 82082)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124250692-1876501 08H05_rep_D_Tomoxetine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124250692-1876501 08H05_rep_D_Tomoxetine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210119_LKM_yeast_MeOH_control_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152406856-1576884 Batch2_NCIH2291_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_B2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYZ01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case254_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case254_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130718779-1877598 13E07_rep_C_Darunavirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130718779-1877598 13E07_rep_C_Darunavirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_123a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/164-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d1_283_lipid__Neg_17Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 33225, column 1 (SysVirol_IFL001_Cal04RG_d1_283_lipid__Neg_17Sep13_13-07-01.mzXML, line 33225)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/CORN_AD1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152537765-1576958 Batch1_HCC1143_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/201901011_ES_H3K_batch13_repA_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170127_051ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/3a/d1bf781d93d80315a9ce27ec595146/input_file/MMW5_20170127_051ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike3_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_4_Dorsal_skin_HO_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_4_Dorsal_skin_HO_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122717041-1880057 15B05_rep_D_Anethole-trithioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122717041-1880057 15B05_rep_D_Anethole-trithioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisH_#3_P4D7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (hisH_#3_P4D7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007507_031618-0.01Thr1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_118.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152128185-1868003 05A04_rep_C_Chlorpropamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152128185-1868003 05A04_rep_C_Chlorpropamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009354_20190620171730_IBD200_E1_A1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample051.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J11_id_MSn_positive.mzML at line 21
index 698 is out of bounds for axis 0 with size 698
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125742926-1877153 13G04_rep_A_Isometheptene_mucatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125742926-1877153 13G04_rep_A_Isometheptene_mucatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpTen1_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223149320-1870007 01G02_rep_B_Morantel tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223149320-1870007 01G02_rep_B_Morantel tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample126_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152631007-1577002 Batch2_NCIH292_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201943668-1878154 09A05_rep_D_N-Acetyl-DL-homocysteine_Thiolactonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201943668-1878154 09A05_rep_D_N-Acetyl-DL-homocysteine_Thiolactonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/blank_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dtpD_P6D2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (dtpD_P6D2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_115_1B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_69.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GC1_01_16804.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaC_#1_P5D9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (waaC_#1_P5D9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OAD5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ynfH_#1_P5F6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (ynfH_#1_P5F6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124947679-1876792 12A03_rep_C_Bemegridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124947679-1876792 12A03_rep_C_Bemegridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153116434-1577236 Batch3_SKMES1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frdB_#2_P4E6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (frdB_#2_P4E6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_sample01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090775/peak/converties targeted/SAE5b-t.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223655212-1870240 01B08_rep_C_Levodopab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223655212-1870240 01B08_rep_C_Levodopab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113631526-1874603 11F05_rep_C_Roxithromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113631526-1874603 11F05_rep_C_Roxithromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gudD_#1_P3D1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (gudD_#1_P3D1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121306233-1866879 04A08_rep_B_Albendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121306233-1866879 04A08_rep_B_Albendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009779_IBD200_E11_A12.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yihP_#1_P4D2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (yihP_#1_P4D2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mltB_P3H6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (mltB_P3H6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_170.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ2_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N11_id_MSn_positive.mzML at line 21
index 701 is out of bounds for axis 0 with size 701
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/22.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1326.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1326.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2H02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_19090114_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D12_id_MSn_positive.mzML at line 21
index 723 is out of bounds for axis 0 with size 723
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ftsI_P3B5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ftsI_P3B5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101003688-1869246 07G05_rep_B_Tobramycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101003688-1869246 07G05_rep_B_Tobramycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151353891-1924892 4_A2_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151353891-1924892 4_A2_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case16_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case16_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample169.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113738212-1922611 3_A10_STE2_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113738212-1922611 3_A10_STE2_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/43-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/688.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_71.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_E3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092022635-1878639 13B05_rep_D_Pronethalol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092022635-1878639 13B05_rep_D_Pronethalol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153446537-1577406 Batch5_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D5_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G5_id_MSn_positive.mzML at line 21
index 731 is out of bounds for axis 0 with size 731
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S005_0124_190125073724.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151944607-1867919 05B02_rep_C_Tremorine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151944607-1867919 05B02_rep_C_Tremorine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094792/raw/raw_files/Stylatula.mzML at line 21
index 346 is out of bounds for axis 0 with size 115
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222825399-1869854 01F10_rep_A_Pheniramine maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222825399-1869854 01F10_rep_A_Pheniramine maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_31.mzXML at line 689
Premature end of data in tag peaks line 18433, line 18437, column 7747 (20121114_31.mzXML, line 18437)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151609873-1576498 Batch7_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_G7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K10_id_MSn_negative.mzML at line 21
index 339 is out of bounds for axis 0 with size 339
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7B07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_164.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151336285-1576371 Batch6_CORL279_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151920771-1576657 Batch7_NCIH510_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152610631-1576985 Batch3_KP4_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C17_id_MSn_positive.mzML at line 21
index 384 is out of bounds for axis 0 with size 384
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD4_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1877.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1877.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151602740-1576492 Batch7_CAL51_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1318.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1318.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GA4_01_17012.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H21_id_MSn_negative.mzML at line 21
index 305 is out of bounds for axis 0 with size 305
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125455462-1862981 03F08_rep_D_Mebendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125455462-1862981 03F08_rep_D_Mebendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100721851-1869118 07G04_rep_A_Betahistine_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100721851-1869118 07G04_rep_A_Betahistine_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N6_id_MSn_negative.mzML at line 21
index 316 is out of bounds for axis 0 with size 316
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STY2_50EV_RA4_01_22509.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30134 - GI-16-418.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152500285-1868164 05G09_rep_D_Dequalinium_dichloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152500285-1868164 05G09_rep_D_Dequalinium_dichloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D21_id_MSn_negative.mzML at line 21
index 281 is out of bounds for axis 0 with size 281
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GC7_01_16935.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Ac21.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fabA_P3B6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (fabA_P3B6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_L10_id_MSn_negative.mzML at line 21
index 332 is out of bounds for axis 0 with size 332
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ2_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/LiLi-14d.mzXML at line 689
Premature end of data in tag peaks line 1651, line 1655, column 3579 (LiLi-14d.mzXML, line 1655)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113215528-1922331 1_G3_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113215528-1922331 1_G3_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122741753-1875776 08C02_rep_A_Reboxetine_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122741753-1875776 08C02_rep_A_Reboxetine_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/chiP_P3H5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (chiP_P3H5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated8hC2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated8hC2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201455454-1881938 16A11_rep_C_Troxipideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201455454-1881938 16A11_rep_C_Troxipideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202534121-1878430 10D01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202534121-1878430 10D01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gcl_#2_P4D1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (gcl_#2_P4D1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092541594-1878888 14A02_rep_B_Etomidatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092541594-1878888 14A02_rep_B_Etomidatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152821907-1868320 06H07_rep_A_Primaquine_diphosphatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152821907-1868320 06H07_rep_A_Primaquine_diphosphatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112630045-1874170 11G06_rep_A_Simvastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112630045-1874170 11G06_rep_A_Simvastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/corA_P3C12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (corA_P3C12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_07_RIN_25.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_07_RIN_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD4_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/003_Ammonia_Day4_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223619739-1870213 01H04_rep_C_Sulindaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223619739-1870213 01H04_rep_C_Sulindaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081381/raw/198rootbacteria/342E.mzXML at line 88
Invalid base64-encoded string: number of data characters (108317) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD4_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081762.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152154385-1576779 Batch2_NCIH2291_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD1_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150553334-1864868 02E10_rep_C_Pirenzepine dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150553334-1864868 02E10_rep_C_Pirenzepine dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122356166-1879902 15G07_rep_C_Montelukasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122356166-1879902 15G07_rep_C_Montelukasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30074 - GI-14-575.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223229441-1870037 01A05_rep_B_Metformin hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223229441-1870037 01A05_rep_B_Metformin hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GD10_01_16827.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145543327-1863909 02E08_rep_A_Isoconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145543327-1863909 02E08_rep_A_Isoconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113950498-1874763 11G03_rep_D_Raloxifene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113950498-1874763 11G03_rep_D_Raloxifene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case182_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case182_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153544134-1577453 Batch4_NCIH1563_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GG9_01_16870.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A11_id_MSn_negative_20240503181922.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 2-30186 - GI-16-575.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202527798-1878425 10A11_rep_A_Balsalazide_Sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202527798-1878425 10A11_rep_A_Balsalazide_Sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112232767-1921862 3_B10_GPR1_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112232767-1921862 3_B10_GPR1_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151812561-1867846 05H08_rep_C_Clomiphene_citrate_(Z,E)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151812561-1867846 05H08_rep_C_Clomiphene_citrate_(Z,E)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_106a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw3_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30137 - GI-16-545.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/004_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200720616-1881600 16B01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200720616-1881600 16B01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101500037-1869483 07D07_rep_C_Lovastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101500037-1869483 07D07_rep_C_Lovastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201609904-1881991 16E02_rep_C_Cefuroxime_axetila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201609904-1881991 16E02_rep_C_Cefuroxime_axetila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224100032-1870428 01H01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224100032-1870428 01H01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124205258-1876464 08D04_rep_D_Zaleplona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124205258-1876464 08D04_rep_D_Zaleplona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_52.mzXML at line 689
Premature end of data in tag msRun line 5, line 19952, column 1 (20121114_52.mzXML, line 19952)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122028578-1879744 15H02_rep_B_Imatiniba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122028578-1879744 15H02_rep_B_Imatiniba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125329476-1862911 03E06_rep_C_Tolfenamic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125329476-1862911 03E06_rep_C_Tolfenamic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153615215-1577479 Batch5_NCIH1792_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD1_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/315.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_10_Dorsal_skin_Ma_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 93 (Mouse_10_Dorsal_skin_Ma_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2A01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GA7_01_12070.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123332078-1876054 08C02_rep_B_Reboxetine_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123332078-1876054 08C02_rep_B_Reboxetine_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wzxB_P4E2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (wzxB_P4E2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1129.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1129.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_G7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121125802-1879335 14G09_rep_D_Mephenytoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121125802-1879335 14G09_rep_D_Mephenytoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121915670-1867165 04H04_rep_C_Trifluoperazine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121915670-1867165 04H04_rep_C_Trifluoperazine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_09_leg_muscle_control_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_09_leg_muscle_control_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152505321-1868168 05H05_rep_D_Kanamycin_A_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152505321-1868168 05H05_rep_D_Kanamycin_A_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD3_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/036_CRa_H9M5_M470_C03_K3_high_pos.mzXML at line 689
Premature end of data in tag peaks line 20369, line 20373, column 65012 (036_CRa_H9M5_M470_C03_K3_high_pos.mzXML, line 20373)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1G04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122749514-1875782 08F02_rep_A_Loracarbefa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122749514-1875782 08F02_rep_A_Loracarbefa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114153909-1922837 4_H8_STE2_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114153909-1922837 4_H8_STE2_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124052758-1876406 08B06_rep_D_Tenatoprazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124052758-1876406 08B06_rep_D_Tenatoprazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152053604-1576731 Batch1_NCIH1975_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113446436-1874520 11B03_rep_C_Cromolyn_disodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113446436-1874520 11B03_rep_C_Cromolyn_disodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_G2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122954406-1875880 08C06_rep_A_Voriconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122954406-1875880 08C06_rep_A_Voriconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_154.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/222.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122735355-1867567 05F02_rep_A_Ketotifen_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122735355-1867567 05F02_rep_A_Ketotifen_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092937357-1879072 14A01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092937357-1879072 14A01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-044_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M14_id.mzML at line 21
index 547 is out of bounds for axis 0 with size 547
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/002_Urea_Day4_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113505796-1874535 11F03_rep_C_Nylidrinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113505796-1874535 11F03_rep_C_Nylidrinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/90.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hB2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hB2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130708933-1877590 13B05_rep_C_Pronethalol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130708933-1877590 13B05_rep_C_Pronethalol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151533197-1924973 4_H8_SNF3_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151533197-1924973 4_H8_SNF3_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/BeautyProducts_Vol3/BP1_01_12346.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_Plasma2_POS.mzXML at line 689
attributes construct error, line 38, column 75 (Person4_Plasma2_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101108371-1869298 07F06_rep_B_Methoxamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101108371-1869298 07F06_rep_B_Methoxamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD1_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_9_Liver_Ma_control_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_9_Liver_Ma_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112655147-1922092 4_H5_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112655147-1922092 4_H5_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/1H-indole.mzXML at line 689
Premature end of data in tag peaks line 7407, line 7411, column 85486 (1H-indole.mzXML, line 7411)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_A8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125102888-1876848 12C11_rep_C_Nisoxetine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125102888-1876848 12C11_rep_C_Nisoxetine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/274.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_sample04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202338648-1878339 10G06_rep_A_Dicumarolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202338648-1878339 10G06_rep_A_Dicumarolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130512806-1877498 13F04_rep_C_Deptropine_citrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130512806-1877498 13F04_rep_C_Deptropine_citrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224346410-1870559 01E05_rep_D_Isoxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224346410-1870559 01E05_rep_D_Isoxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_3_RESV_200uM_POS.mzXML at line 689
attributes construct error, line 38, column 83 (HepG2_3_RESV_200uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_G3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_G3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET75.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET75.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBmegR131_5h2a.mzML at line 88
Invalid base64-encoded string: number of data characters (6661) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Liver_raw files/Lumos_ISAS_liver_unLabeled_2.mzML at line 689
Premature end of data in tag spectrumList line 92, line 52829, column 1 (Lumos_ISAS_liver_unLabeled_2.mzML, line 52829)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153321623-1577337 Batch5_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_079b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153833803-1577595 Batch6_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122551318-1867483 05D09_rep_A_Pemirolast_potassiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122551318-1867483 05D09_rep_A_Pemirolast_potassiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113904275-1874726 11D09_rep_D_Iocetamic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113904275-1874726 11D09_rep_D_Iocetamic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N15_id_MSn_negative.mzML at line 21
index 376 is out of bounds for axis 0 with size 376
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_54.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_138a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170127_022ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/03/e6cf2055d8c87c1caee78065eab355/input_file/MMW5_20170127_022ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200748577-1881620 16B03_rep_A_Ezetimibeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200748577-1881620 16B03_rep_A_Ezetimibeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114200780-1922843 4_D9_STE2_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114200780-1922843 4_D9_STE2_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_G7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-099_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acrE_P3D3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (acrE_P3D3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121420201-1866934 04G11_rep_B_Mebeverine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121420201-1866934 04G11_rep_B_Mebeverine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/003_Ammonia_Day9_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153005590-1868401 06F11_rep_A_Dinoprost_trometamolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153005590-1868401 06F11_rep_A_Dinoprost_trometamolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124653847-1876693 09G07_rep_A_Chlorcyclizine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124653847-1876693 09G07_rep_A_Chlorcyclizine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111636322-1921556 1_H8_GAP1_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111636322-1921556 1_H8_GAP1_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D10_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_54.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092837556-1879024 14E02_rep_B_(S)-propranolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092837556-1879024 14E02_rep_B_(S)-propranolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gph_P4D11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (gph_P4D11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B3_id_MSn_positive.mzML at line 21
index 689 is out of bounds for axis 0 with size 689
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224353871-1870565 01G08_rep_D_Miconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224353871-1870565 01G08_rep_D_Miconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151325123-1924867 3_D7_SNF3_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151325123-1924867 3_D7_SNF3_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_6_B-A2_1_5821.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/guaC_P4D9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (guaC_P4D9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case236_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case236_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125443337-1862971 03B05_rep_D_Alverine_citrate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125443337-1862971 03B05_rep_D_Alverine_citrate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123707661-1876227 08G06_rep_C_Cytarabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123707661-1876227 08G06_rep_C_Cytarabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murC_P4C7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (murC_P4C7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114536400-1875041 12E08_rep_A_Quinapril_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114536400-1875041 12E08_rep_A_Quinapril_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D23_id.mzML at line 21
index 501 is out of bounds for axis 0 with size 501
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202133591-1878240 09A06_rep_D_Flurandrenolidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202133591-1878240 09A06_rep_D_Flurandrenolidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121332827-1866899 04B01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121332827-1866899 04B01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS309P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc047_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc047_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153045723-1868429 06B04_rep_B_Carbarsoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153045723-1868429 06B04_rep_B_Carbarsoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_G6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123100142-1867726 05F09_rep_B_Bezafibratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123100142-1867726 05F09_rep_B_Bezafibratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121349759-1879442 15G01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121349759-1879442 15G01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_F7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlich1001R17_5h3a.mzML at line 689
Specification mandates value for attribute accessindow, line 45817, column 43 (pBlich1001R17_5h3a.mzML, line 45817)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223823888-2227656 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224316695-1870535 01C03_rep_D_Panthenol (D)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224316695-1870535 01C03_rep_D_Panthenol (D)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123107618-1867732 05H09_rep_B_Oxantel_pamoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123107618-1867732 05H09_rep_B_Oxantel_pamoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_C8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113201703-1922319 1_C2_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113201703-1922319 1_C2_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU48.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysP_#4_P4H11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (cysP_#4_P4H11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130502519-1877490 13D07_rep_B_Prothionamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130502519-1877490 13D07_rep_B_Prothionamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152736484-1868285 06B01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152736484-1868285 06B01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mtr_#1_P3H4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (mtr_#1_P3H4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aspC_#3_P5E7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (aspC_#3_P5E7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_G2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_AM_5.mzXML at line 689
Premature end of data in tag peaks line 2191, line 2195, column 7656 (L_AM_5.mzXML, line 2195)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124329775-1876533 09A08_rep_A_Rebamipideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124329775-1876533 09A08_rep_A_Rebamipideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I4_id_MSn_negative.mzML at line 21
index 346 is out of bounds for axis 0 with size 346
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yfbR_P4H2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (yfbR_P4H2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.alb_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E5_id_MSn_positive.mzML at line 21
index 613 is out of bounds for axis 0 with size 613
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080071/ccms_peak/Dataset 1/Positive1/._NZ Lichen_P_1_lichen_05_F 3_GC3_01_24926.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124022112-1876382 08E10_rep_D_Ipsapironea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124022112-1876382 08E10_rep_D_Ipsapironea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_13_Liver_CMC_control_NEG.mzXML at line 689
attributes construct error, line 38, column 91 (Mouse_13_Liver_CMC_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yfeW_#1_P4B8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (yfeW_#1_P4B8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pldA_P4F2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (pldA_P4F2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224102619-1870430 01E02_rep_D_Procaine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224102619-1870430 01E02_rep_D_Procaine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_133_1C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.TU6071_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000091760/raw/TC17_pellet.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223900354-1870337 01H06_rep_C_Adiphenine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223900354-1870337 01H06_rep_C_Adiphenine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123913154-1876327 08A07_rep_C_Eserine_hemisulfate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123913154-1876327 08A07_rep_C_Eserine_hemisulfate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082773/ccms_peak/raw/MTBLS33/022310fluexpSET1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082773/ccms_peak/raw/MTBLS33/022310fluexpSET1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/004_Nitrate_Day11_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I17_id_MSn_negative.mzML at line 21
index 312 is out of bounds for axis 0 with size 312
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person25_plasma_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person25_plasma_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224328902-1870545 01C06_rep_D_Thiamphenicola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224328902-1870545 01C06_rep_D_Thiamphenicola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GB7_01_16923.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121424389-1866937 04B11_rep_B_Praziquantelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121424389-1866937 04B11_rep_B_Praziquantelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P19_id_MSn_positive_20231124133935.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-165_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_F6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pstC_P3B11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (pstC_P3B11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000088261/raw/210916_tanaka08.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.Tu6071_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153255263-1868530 06G02_rep_B_Tropisetron_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153255263-1868530 06G02_rep_B_Tropisetron_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150317656-1924346 1_H9_RGT2_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150317656-1924346 1_H9_RGT2_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009468_IBD200_E8_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ4_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G4_id_MSn_positive.mzML at line 21
index 509 is out of bounds for axis 0 with size 509
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_71.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C3_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_G3_id_negative.mzML at line 21
index 265 is out of bounds for axis 0 with size 265
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/064_64.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092653715-1878944 14E03_rep_B_(-)-Eseroline_fumarate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092653715-1878944 14E03_rep_B_(-)-Eseroline_fumarate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GG4_01_11547.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180902_ES_H3K_batch1_repB_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_C8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123044198-1875919 08D08_rep_A_Temozolomideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123044198-1875919 08D08_rep_A_Temozolomideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C16_id_MSn_positive.mzML at line 21
index 589 is out of bounds for axis 0 with size 589
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122556159-1879994 15E01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122556159-1879994 15E01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tdcD_#1_P4B8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (tdcD_#1_P4B8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130423661-1877460 13D08_rep_B_Fluticasone_propionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130423661-1877460 13D08_rep_B_Fluticasone_propionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD6_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111530427-1921499 1_D10_GAP1_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111530427-1921499 1_D10_GAP1_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_C10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/042_CRa_H9M5_M470_Pool_06_high_pos.mzXML at line 689
Premature end of data in tag peaks line 23751, line 23755, column 101876 (042_CRa_H9M5_M470_Pool_06_high_pos.mzXML, line 23755)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151229204-1576315 Batch5_MALME3M_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J7_id_MSn_negative.mzML at line 21
index 326 is out of bounds for axis 0 with size 326
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170207_031EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/87/637e02e8a453d70d92ca59e7b5d7a8/input_file/MMW6_20170207_031EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S25_0126_190128124805.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D8_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151116177-1924756 3_E3_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151116177-1924756 3_E3_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1052.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080705/ccms_peak/RAW/SILAC 32h.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argC_P5D4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (argC_P5D4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153703155-1577519 Batch5_A704_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHL21.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2C014.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145721299-1863988 02D09_rep_A_Nalbuphine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145721299-1863988 02D09_rep_A_Nalbuphine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125916405-1877225 13F02_rep_A_Flucloxacillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125916405-1877225 13F02_rep_A_Flucloxacillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample001.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A3_id_negative_20230130215408.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD6_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088261/raw/210916_tanaka11.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009440_IBD200_E6_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170125_060EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/7e/33ca503377e7e43526a94e5bf1adeb/input_file/QC_20170125_060EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000079466/peak/Adenocalymma imperatoris/AIR-NEG.mgf at line 1048
'str' object cannot be interpreted as an integer
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007524_031618-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mak_P3E3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (mak_P3E3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/772.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_9_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gor_P3F11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (gor_P3F11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_238.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101551688-1869522 07E03_rep_C_Thiostreptonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101551688-1869522 07E03_rep_C_Thiostreptonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222850867-1869873 01D06_rep_A_Dapsonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222850867-1869873 01D06_rep_A_Dapsonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/001_Nitrate_Day14_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1H12_160526122025.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/TM-plasma-S5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123014205-1875895 08E10_rep_A_Ipsapironeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123014205-1875895 08E10_rep_A_Ipsapironeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009372_IBD200_E2_A3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153559641-1577466 Batch5_HCT116_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112338518-1874033 10G08_rep_D_Merbrominb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112338518-1874033 10G08_rep_D_Merbrominb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_97.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD6_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_229.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153924816-1577638 Batch6_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170207_020EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b5/f3984cda35a057681d5f6be9deada0/input_file/SH7_20170207_020EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122823391-1880109 15D09_rep_D_Granisetronb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122823391-1880109 15D09_rep_D_Granisetronb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113024847-1922237 1_H2_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113024847-1922237 1_H2_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122410204-1867401 04E06_rep_D_Chenodiolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122410204-1867401 04E06_rep_D_Chenodiolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B07P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pbpC_P4C5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (pbpC_P4C5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pspE_#2_P5F11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (pspE_#2_P5F11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170209_026ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/f1/8565cb107c7674ff072d650b943343/input_file/MMW6_20170209_026ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/003_Ammonia_Day14_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A10Pa5mm_black_P1-B-9_01_23073.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111639831-1921559 1_G4_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111639831-1921559 1_G4_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122924455-1867654 05B10_rep_B_Guanfacine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122924455-1867654 05B10_rep_B_Guanfacine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172708220-1889921 Wb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125234831-1862867 03A11_rep_C_Phenelzine_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125234831-1862867 03A11_rep_C_Phenelzine_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121212511-1879370 14F10_rep_D_Nialamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121212511-1879370 14F10_rep_D_Nialamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_F8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD6_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpp_#1_P4A2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (lpp_#1_P4A2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gabP_P3F5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (gabP_P3F5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114220032-1874884 11B02_rep_D_Auranofina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114220032-1874884 11B02_rep_D_Auranofina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/393.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/453.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151736702-1576571 Batch4_DU145_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152635742-1577006 Batch1_7860_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_E6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102133216-1869801 07C08_rep_D_Sibutramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102133216-1869801 07C08_rep_D_Sibutramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152340412-1868104 05A04_rep_D_Chlorpropamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152340412-1868104 05A04_rep_D_Chlorpropamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAJ06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170127_067ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/3a/edcc9ce3e02de11fb9df9c7dc36373/input_file/MMW6_20170127_067ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/15-4_idMsMs_25min_20eV_GE3_01_4245.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_CABIN_sample08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yehY_P4D3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (yehY_P4D3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202218901-1882277 16D11_rep_D_Phenprobamatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202218901-1882277 16D11_rep_D_Phenprobamatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151006527-1924696 3_H3_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151006527-1924696 3_H3_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_99.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_99.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5A08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1843.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1843.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150212125-1864698 02B03_rep_B_Zimelidine dihydrochloride monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150212125-1864698 02B03_rep_B_Zimelidine dihydrochloride monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122048251-1879759 15G11_rep_B_Fosinoprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122048251-1879759 15G11_rep_B_Fosinoprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151822931-1867854 05E07_rep_C_Ambroxol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151822931-1867854 05E07_rep_C_Ambroxol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J17_id_MSn_positive_20240503090216.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_11P_A9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD2_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121352964-1866914 04D11_rep_B_Quinidine_hydrochloride_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121352964-1866914 04D11_rep_B_Quinidine_hydrochloride_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBsubR27_5h3a.mzML at line 88
Invalid base64-encoded string: number of data characters (6901) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_14_CNR_20.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_14_CNR_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_C2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082768/ccms_peak/raw/MTBLS31/012711flubatch4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082768/ccms_peak/raw/MTBLS31/012711flubatch4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112745720-1874230 11A01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112745720-1874230 11A01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1C01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ANT1_20EV_RA3_01_22646.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201220_LKM_10to1_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_E4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125721469-1877136 13C08_rep_A_Pramipexole_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125721469-1877136 13C08_rep_A_Pramipexole_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_59.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121850603-1879670 15B02_rep_B_Acetylcysteinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121850603-1879670 15B02_rep_B_Acetylcysteinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_76.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_76.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145704041-1863974 02C05_rep_A_Famotidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145704041-1863974 02C05_rep_A_Famotidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113901780-1874724 11H02_rep_D_Iopamidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113901780-1874724 11H02_rep_D_Iopamidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A4_id_MSn_negative.mzML at line 21
index 221 is out of bounds for axis 0 with size 221
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130528022-1877510 13C07_rep_C_Proscillaridin_Ab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130528022-1877510 13C07_rep_C_Proscillaridin_Ab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210923_LKM_beads_timecourse_5min_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125946067-1877248 13E07_rep_A_Darunavirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125946067-1877248 13E07_rep_A_Darunavirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078932/ccms_peak/141031_CAICE_C18_806_20uL.mzXML at line 689
Premature end of data in tag peaks line 3608, line 3608, column 748 (141031_CAICE_C18_806_20uL.mzXML, line 3608)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100954976-1869239 07G07_rep_B_Pregnenolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100954976-1869239 07G07_rep_B_Pregnenolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysJ_P4A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (cysJ_P4A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113106592-1922271 1_A11_IZH2_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113106592-1922271 1_A11_IZH2_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124720005-1876714 09G01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124720005-1876714 09G01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_141.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_141.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2A10P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122948170-1875875 08B08_rep_A_Escitalopram_oxalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122948170-1875875 08B08_rep_A_Escitalopram_oxalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123741945-1876254 08E10_rep_C_Ipsapironea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123741945-1876254 08E10_rep_C_Ipsapironea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153907071-1577623 Batch7_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180824_ES_H3K_batch10_repC_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130756561-1877628 13G03_rep_C_Nifekalantb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130756561-1877628 13G03_rep_C_Nifekalantb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201105069-1881765 16D08_rep_B_Adapalenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201105069-1881765 16D08_rep_B_Adapalenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD5_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/panE_P3G9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (panE_P3G9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_59.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_4_B-A2_1_5818.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153640521-1577500 Batch4_NCIH1563_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_103.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_AP_5.mzXML at line 689
Premature end of data in tag peaks line 2780, line 2784, column 7659 (L_AP_5.mzXML, line 2784)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122129788-1867272 04C08_rep_D_Clotrimazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122129788-1867272 04C08_rep_D_Clotrimazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114903682-1875203 12E02_rep_B_Nizatidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114903682-1875203 12E02_rep_B_Nizatidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121154000-1879356 14H02_rep_D_Mecamylamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121154000-1879356 14H02_rep_D_Mecamylamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-057_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_C4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/281.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152908616-1868357 06F05_rep_A_Linezolidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152908616-1868357 06F05_rep_A_Linezolidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007516_031618-0.01Thr4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike1_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR131_5h3a.mzML at line 689
Specification mandates value for attribute cvIngFAyJ6BP8iegT, line 107627, column 41 (pBlateR131_5h3a.mzML, line 107627)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/leuE_P3E2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (leuE_P3E2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113616385-1874591 11D09_rep_C_Iocetamic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113616385-1874591 11D09_rep_C_Iocetamic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153629609-1577491 Batch4_PANC0813_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2B06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/964.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112104676-1873045 10E02_rep_C_Butambenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112104676-1873045 10E02_rep_C_Butambenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101053234-1869286 07D10_rep_B_Imipenemb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101053234-1869286 07D10_rep_B_Imipenemb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc046_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc046_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_09_Blank.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_09_Blank.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/441.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111935000-1921709 2_D10_GAP1_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111935000-1921709 2_D10_GAP1_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bglX_#1_P4C6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (bglX_#1_P4C6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114216421-1874881 11C11_rep_D_Ethaverine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114216421-1874881 11C11_rep_D_Ethaverine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kefF_P3A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (kefF_P3A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N7_id_MSn_negative.mzML at line 21
index 368 is out of bounds for axis 0 with size 368
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J1_id.mzML at line 21
index 565 is out of bounds for axis 0 with size 565
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/744.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N18_id_negative.mzML at line 21
index 288 is out of bounds for axis 0 with size 288
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007557_031618-1CRP6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/360.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lptG_#4_P3E2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (lptG_#4_P3E2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/577-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111721391-1871618 10C02_rep_B_Nadideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111721391-1871618 10C02_rep_B_Nadideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/418.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153103531-1868443 06B10_rep_B_Bisacodylb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153103531-1868443 06B10_rep_B_Bisacodylb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121900568-1867153 04B07_rep_C_Isotretinoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121900568-1867153 04B07_rep_C_Isotretinoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_C9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_21_Liver_EtOH_control_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_21_Liver_EtOH_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152105913-1867985 05B03_rep_C_Practololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152105913-1867985 05B03_rep_C_Practololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_18072701_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091901747-1878576 13B02_rep_D_Remoxipride_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091901747-1878576 13B02_rep_D_Remoxipride_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET130.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET130.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112456727-1874096 10A01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112456727-1874096 10A01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A1_id_MSn_negative_20240410180254.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190118_ES_H3K_batch14_repB_202.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112318312-1873632 10A08_rep_D_Liranaftateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112318312-1873632 10A08_rep_D_Liranaftateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201022098-1877739 09H06_rep_B_Sulfachloropyridazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201022098-1877739 09H06_rep_B_Sulfachloropyridazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V5_LH_PSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GB11_01_12091.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C10_id.mzML at line 21
index 574 is out of bounds for axis 0 with size 574
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_H7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_H7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/speG_#4_P4B4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (speG_#4_P4B4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151027039-1865080 02F05_rep_D_Diltiazem hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151027039-1865080 02F05_rep_D_Diltiazem hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_226.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_C11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_C11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223241327-1870046 01H06_rep_B_Adiphenine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223241327-1870046 01H06_rep_B_Adiphenine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_11_40x_2022_1006_Michael_pos-0.0031.mzML at line 689
Premature end of data in tag binary line 2053, line 2053, column 1679807 (1_11_40x_2022_1006_Michael_pos-0.0031.mzML, line 2053)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample015.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D1_postFOS_2_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I13_id_negative.mzML at line 21
index 255 is out of bounds for axis 0 with size 255
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101211099-1869348 07D03_rep_B_Iohexolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101211099-1869348 07D03_rep_B_Iohexolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101902551-1869678 07C10_rep_D_Bromperidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101902551-1869678 07C10_rep_D_Bromperidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_100.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_07_blood_control_skin_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_07_blood_control_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190330292-1889794 NNa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152247468-1576821 Batch2_NCIH441_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/124-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153132280-1868465 06H06_rep_B_Brompheniramine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153132280-1868465 06H06_rep_B_Brompheniramine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fadA_P4D11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (fadA_P4D11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD5_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/130-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person13_RBC_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Person13_RBC_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112655534-1874190 11B07_rep_A_Suprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112655534-1874190 11B07_rep_A_Suprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/putA_P4A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (putA_P4A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150257901-1864733 02D10_rep_B_Picotamide monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150257901-1864733 02D10_rep_B_Picotamide monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case84_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case84_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112558319-1922042 4_A11_GPR1_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112558319-1922042 4_A11_GPR1_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_1_RESV_20uM_POS.mzXML at line 689
attributes construct error, line 38, column 82 (HepG2_1_RESV_20uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111709445-1921584 1_A10_GAP1_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111709445-1921584 1_A10_GAP1_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122639630-1880028 15F11_rep_D_Bifonazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122639630-1880028 15F11_rep_D_Bifonazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152302227-1868075 05G08_rep_D_Carbetapentane_citrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152302227-1868075 05G08_rep_D_Carbetapentane_citrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GH7_01_11568.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_68.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_68.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152236202-1576812 Batch2_NCIH2085_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_73_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_73_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114826608-1875173 12E04_rep_B_Xamoterol_hemifumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114826608-1875173 12E04_rep_B_Xamoterol_hemifumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/156-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_D8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cpdA_#1_P4C5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (cpdA_#1_P4C5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlB1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlB1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Candida_catenulata_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GF6_01_17088.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151401688-1576392 Batch6_NCIH2171_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Plancto_1392.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E13_id_MSn_positive.mzML at line 21
index 494 is out of bounds for axis 0 with size 494
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150454285-1864822 02G07_rep_C_Tamoxifen citratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150454285-1864822 02G07_rep_C_Tamoxifen citratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/122-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_AM_2.mzXML at line 689
Premature end of data in tag msRun line 5, line 2444, column 1 (L_AM_2.mzXML, line 2444)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111724097-1921597 1_A9_GAP1_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111724097-1921597 1_A9_GAP1_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_120_1C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_G2_id_positive.mzML at line 21
index 366 is out of bounds for axis 0 with size 366
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_Blood3_POS.mzXML at line 689
attributes construct error, line 38, column 74 (Person4_Blood3_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081780.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152841904-1577112 Batch3_NCIH322M_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K22_id_MSn_positive.mzML at line 21
index 406 is out of bounds for axis 0 with size 406
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I17_id_negative.mzML at line 21
index 270 is out of bounds for axis 0 with size 270
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_253.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153030406-1577201 Batch3_SKMEL5_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_A4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/438.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151835243-1867864 05F09_rep_C_Bezafibratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151835243-1867864 05F09_rep_C_Bezafibratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153530861-1577442 Batch4_977_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/63-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw3_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224252492-1870516 01B11_rep_D_Minoxidilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224252492-1870516 01B11_rep_D_Minoxidilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153015033-1577190 Batch3_PANC0403_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_dilute_190201055722.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/559-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075257.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc065_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc065_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_CABIN_sample10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample18n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNT360_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112110627-1921791 2_E10_GAP1_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112110627-1921791 2_E10_GAP1_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201004190-1881720 16B02_rep_B_Ipriflavoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201004190-1881720 16B02_rep_B_Ipriflavoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_119a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145752083-1864013 02A11_rep_A_Pindolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145752083-1864013 02A11_rep_A_Pindolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_QC_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151448089-1576431 Batch6_RPMI8226_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151134494-1576270 Batch5_LUDLU1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_global_LFD39_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113429726-1922448 2_F9_IZH2_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113429726-1922448 2_F9_IZH2_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079466/peak/Adenocalymma imperatoris/blank-NEG.mgf at line 1048
'str' object cannot be interpreted as an integer
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ytfR_P3C4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ytfR_P3C4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170209_032ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c2/ab3de2f12d5e920e915d6be035c78c/input_file/MMW5_20170209_032ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc051_pos.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc051_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_16_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153903427-1577620 Batch6_HCC1806_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K19_id_MSn_positive.mzML at line 21
index 668 is out of bounds for axis 0 with size 668
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_E1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_E1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_G12_id_negative.mzML at line 21
index 207 is out of bounds for axis 0 with size 207
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009733_IBD200_E20_A1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A7_id_MSn_negative.mzML at line 21
index 209 is out of bounds for axis 0 with size 209
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L12_id_MSn_negative.mzML at line 21
index 315 is out of bounds for axis 0 with size 315
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ2_4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153553711-1577461 Batch5_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123426222-1876098 08A01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123426222-1876098 08A01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_sample01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101118503-1869306 07C04_rep_B_Cetirizine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101118503-1869306 07C04_rep_B_Cetirizine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200951543-1877717 09B04_rep_B_Mepenzolate_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200951543-1877717 09B04_rep_B_Mepenzolate_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122535190-1879978 15F02_rep_C_Topotecana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122535190-1879978 15F02_rep_C_Topotecana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD6_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8B01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A19_id_MSn_negative.mzML at line 21
index 288 is out of bounds for axis 0 with size 288
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125855105-1863178 04A01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125855105-1863178 04A01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemL_P3C9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (hemL_P3C9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_B3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pheP_#1_P5A4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (pheP_#1_P5A4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170125_008EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/52/eaa6f9fbb1e75e795e5e38fb11e8e7/input_file/QC_20170125_008EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_5_Liver_HO_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 86 (Mouse_5_Liver_HO_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E7_id.mzML at line 21
index 530 is out of bounds for axis 0 with size 530
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125135649-1862819 03G11_rep_C_Phentolamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125135649-1862819 03G11_rep_C_Phentolamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_105.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_105.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2A05Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201350402-1881889 16G01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201350402-1881889 16G01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201342415-1881883 16H04_rep_B_Raltitrexeda.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201342415-1881883 16H04_rep_B_Raltitrexeda.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_A8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample002.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_02.mzXML at line 689
Premature end of data in tag peaks line 12687, line 12691, column 11844 (20121114_02.mzXML, line 12691)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122618624-1867505 05H05_rep_A_Kanamycin_A_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122618624-1867505 05H05_rep_A_Kanamycin_A_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cydD_#4_P3A12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (cydD_#4_P3A12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNR698_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GA8_01_16781.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4C2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4C2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4D02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_H4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101957811-1869723 07H08_rep_D_Dirithromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101957811-1869723 07H08_rep_D_Dirithromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_177.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150202780-1864691 02C04_rep_B_Cyproheptadine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150202780-1864691 02C04_rep_B_Cyproheptadine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088606/peak/210116_AR_14_HB_09_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111511932-1921098 1_F8_GAP1_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111511932-1921098 1_F8_GAP1_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150148458-1864680 02A09_rep_B_Amidopyrinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150148458-1864680 02A09_rep_B_Amidopyrinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_18111330_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/001_Nitrate_Day9_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_05_1037_prot_49_IMS_17Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_129a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151548286-1576480 Batch7_SN12C_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GA5_01_17013.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_19080521_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_E2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/650.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7F09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075483.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201957929-1878165 09F05_rep_D_Sulfamerazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201957929-1878165 09F05_rep_D_Sulfamerazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD2_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_19032111_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151216687-1924808 3_B8_SNF3_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151216687-1924808 3_B8_SNF3_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_181.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/005_Urea_Day11_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120943636-1879258 14C06_rep_D_Milrinonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120943636-1879258 14C06_rep_D_Milrinonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152452132-1576920 Batch2_IGROV1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F23_id_negative.mzML at line 21
index 264 is out of bounds for axis 0 with size 264
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123651307-1876214 08D07_rep_C_Fomepizolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123651307-1876214 08D07_rep_C_Fomepizolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152243643-1576818 Batch1_LK2_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_E9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223841869-2227672 PAT43.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ytfE_#1_P4C4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (ytfE_#1_P4C4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/003_Ammonia_Day4_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_75.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201315852-1881863 16G03_rep_B_Loteprednol_etabonatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201315852-1881863 16G03_rep_B_Loteprednol_etabonatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_04_206_M_prot_12_IMS_14Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_360.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078891/ccms_peak/massive_cyanos/EH_2014_07_14_KO+N2.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122508153-1879957 15G04_rep_C_Gemcitabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122508153-1879957 15G04_rep_C_Gemcitabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/modB_P5A12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (modB_P5A12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_G7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/822.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_F2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P18_id_negative.mzML at line 21
index 250 is out of bounds for axis 0 with size 250
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130341868-1877427 13H10_rep_B_Levocabastine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130341868-1877427 13H10_rep_B_Levocabastine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086252/ccms_peak/PF077_pos/200728_LQ_PPF077_445838Z01_B9_pos.mzML at line 689
Extra content at the end of the document, line 637859, column 1 (200728_LQ_PPF077_445838Z01_B9_pos.mzML, line 637859)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (17).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH67.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G15Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_G4_id_positive.mzML at line 21
index 352 is out of bounds for axis 0 with size 352
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101006103-1869248 07C02_rep_B_Vigabatrin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101006103-1869248 07C02_rep_B_Vigabatrin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150610141-1924492 1_B9_RGT2_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150610141-1924492 1_B9_RGT2_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121339406-1866904 04B03_rep_B_Diphenidol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121339406-1866904 04B03_rep_B_Diphenidol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151140772-1865138 02B09_rep_D_Acetylsalicylsalicylic acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151140772-1865138 02B09_rep_D_Acetylsalicylsalicylic acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GD7_01_11503.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122250800-1879852 15B02_rep_C_Acetylcysteinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122250800-1879852 15B02_rep_C_Acetylcysteinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125545952-1863022 03C01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125545952-1863022 03C01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123023021-1875902 08E03_rep_A_Tizanidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123023021-1875902 08E03_rep_A_Tizanidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc064_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc064_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_G6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_F16_id_MSn_negative.mzML at line 21
index 343 is out of bounds for axis 0 with size 343
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-8-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151049812-1865098 02A09_rep_D_Amidopyrinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151049812-1865098 02A09_rep_D_Amidopyrinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1060.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_1_Dorsal_skin_HO_control_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_1_Dorsal_skin_HO_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170125_069EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/2c/3402adb1aa30cbacf47b8ee18d8c7a/input_file/MMW6_20170125_069EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075248.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/A1/CNS654_A1_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0004_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0004_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091038/metadata/miltonsilva/Negative_samples/CG-Ca-P2_Neg.mzML at line 689
Opening and ending tag mismatch: binary line 160783 and scanWindow, line 160784, column 30 (CG-Ca-P2_Neg.mzML, line 160784)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2A01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_78.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122558934-1867489 05H07_rep_A_Etoposideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122558934-1867489 05H07_rep_A_Etoposideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysI_P3F4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (cysI_P3F4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111648020-1871592 10B08_rep_B_Trimetozineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111648020-1871592 10B08_rep_B_Trimetozineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114048106-1922778 3_D5_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114048106-1922778 3_D5_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145924164-1864087 02C08_rep_A_Pioglitazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145924164-1864087 02C08_rep_A_Pioglitazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_E2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111812881-1872044 10A06_rep_C_Deferoxamine_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111812881-1872044 10A06_rep_C_Deferoxamine_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124610712-1876659 09D10_rep_A_Ibandronate_sodium_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124610712-1876659 09D10_rep_A_Ibandronate_sodium_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F14_id_MSn_negative.mzML at line 21
index 355 is out of bounds for axis 0 with size 355
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_108.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123726701-1876242 08D08_rep_C_Temozolomidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123726701-1876242 08D08_rep_C_Temozolomidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_08_leg_muscle_control_skin_POS.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_08_leg_muscle_control_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_F9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_E5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yagE_P3H9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (yagE_P3H9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201703337-1878032 09H01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201703337-1878032 09H01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1316.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1316.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I16_id_MSn_negative.mzML at line 21
index 325 is out of bounds for axis 0 with size 325
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purF_P4C6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (purF_P4C6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-faux (7).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125449209-1877019 12B11_rep_D_Methylatropine_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125449209-1877019 12B11_rep_D_Methylatropine_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152335508-1576859 Batch2_NCIH2122_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100603709-1869054 99b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100603709-1869054 99b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acrA_P3A5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (acrA_P3A5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A1_id_negative_20230130211830.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tynA_P3A2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (tynA_P3A2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114805639-1875156 12E05_rep_B_Roliprama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114805639-1875156 12E05_rep_B_Roliprama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_19040322_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122653797-1880039 15C01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122653797-1880039 15C01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG017B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223325922-1870080 01H07_rep_B_Dibucaineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223325922-1870080 01H07_rep_B_Dibucaineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/115_102_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113051729-1874370 11C05_rep_B_Benzthiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113051729-1874370 11C05_rep_B_Benzthiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_19040307_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_018ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/55/7ab593f8afd6197f581201b042d23f/input_file/QC_20170209_018ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125122087-1862808 03D05_rep_C_Nimesulidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125122087-1862808 03D05_rep_C_Nimesulidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122640877-1880029 15F11_rep_D_Bifonazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122640877-1880029 15F11_rep_D_Bifonazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201432454-1877922 09G05_rep_C_Bromopridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201432454-1877922 09G05_rep_C_Bromopridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hA1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hA1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/975.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152445980-1576915 Batch2_MDAMB468_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GC9_01_11658.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114849740-1875192 12F08_rep_B_Dehydroisoandosterone_3-acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114849740-1875192 12F08_rep_B_Dehydroisoandosterone_3-acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124335956-1876538 09A01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124335956-1876538 09A01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125257681-1876934 12E03_rep_D_Thioperamide_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125257681-1876934 12E03_rep_D_Thioperamide_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/napB_P3F6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (napB_P3F6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/832.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_103.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_103.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_RBC_1h_NEG.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer1_RBC_1h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L13_id_MSn_positive.mzML at line 21
index 369 is out of bounds for axis 0 with size 369
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086486/ccms_peak/peak/sample/MSplate23_yhcB_b3233_C10_plateY_rep3_COLD_GEVI_-0-155_2244.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (MSplate23_yhcB_b3233_C10_plateY_rep3_COLD_GEVI_-0-155_2244.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151517253-1924962 4_C8_SNF3_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151517253-1924962 4_C8_SNF3_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD6_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200831949-1881652 16G09_rep_A_Palonosetron_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200831949-1881652 16G09_rep_A_Palonosetron_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113050396-1874369 11F11_rep_B_Methylhydantoin-5-(L)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113050396-1874369 11F11_rep_B_Methylhydantoin-5-(L)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw5_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151608529-1925001 4_G2_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151608529-1925001 4_G2_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153044503-1577211 Batch3_SKMEL5_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152915853-1577141 Batch5_HOP92_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_blood_24h_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Volunteer1_blood_24h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_19071524_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112152049-1873563 10H03_rep_D_Propidium_iodidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112152049-1873563 10H03_rep_D_Propidium_iodidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/651.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_80.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E2_id_MSn_negative.mzML at line 21
index 326 is out of bounds for axis 0 with size 326
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151443341-1576427 Batch7_CORL88_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GD9_01_17185.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d8_288_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag peaks line 21724, line 21728, column 15850 (SysVirol_IFL001_Cal04RG_d8_288_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 21728)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153222623-1577289 Batch4_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152711330-1577036 Batch2_SW900_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201518547-1877954 09F08_rep_C_3-alpha-Hydroxy-5-beta-androstan-17-onea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201518547-1877954 09F08_rep_C_3-alpha-Hydroxy-5-beta-androstan-17-onea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_7_P3A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (ctrl_7_P3A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P14_id_MSn_negative.mzML at line 21
index 325 is out of bounds for axis 0 with size 325
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/966.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIAI08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201117274-1881774 16B11_rep_B_Estramustineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201117274-1881774 16B11_rep_B_Estramustineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125429682-1862960 03F07_rep_D_Tiapride_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125429682-1862960 03F07_rep_D_Tiapride_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_113a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_3_P_rep_4_B-D3_1_5665.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_B9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122204817-1867300 04G06_rep_D_Bupivacaine_hydrochloride_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122204817-1867300 04G06_rep_D_Bupivacaine_hydrochloride_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OD4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hycB_#2_P5A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (hycB_#2_P5A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/srlD_#2_P3A5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (srlD_#2_P3A5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125018325-1876815 12F06_rep_C_(-)-MK_801_hydrogen_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125018325-1876815 12F06_rep_C_(-)-MK_801_hydrogen_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150748215-1864957 02G02_rep_D_Verapamil hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150748215-1864957 02G02_rep_D_Verapamil hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122810425-1867596 05D06_rep_A_Hycanthonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122810425-1867596 05D06_rep_A_Hycanthonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123615836-1876186 08D02_rep_C_Emedastinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123615836-1876186 08D02_rep_C_Emedastinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5B07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093245447-1879217 14C02_rep_C_Phensuximideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093245447-1879217 14C02_rep_C_Phensuximideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD3_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101119784-1869307 07A02_rep_B_Serotonin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101119784-1869307 07A02_rep_B_Serotonin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151048899-1924732 3_C4_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151048899-1924732 3_C4_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114940333-1875233 12B03_rep_B_Flubendazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114940333-1875233 12B03_rep_B_Flubendazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009499_IBD200_E9_A9.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_1_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123403920-1876080 08H08_rep_B_Levetiracetama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123403920-1876080 08H08_rep_B_Levetiracetama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153438048-1577399 Batch5_NCIH727_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130014242-1863244 04E03_rep_A_Fenoterol_hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130014242-1863244 04E03_rep_A_Fenoterol_hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Pos/P10.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rfbB_#4_P4E12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (rfbB_#4_P4E12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2F10P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/799.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET54.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET54.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nadB_#1_P5E4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (nadB_#1_P5E4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/TAA204_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151204783-1576295 Batch5_MALME3M_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBsubR23h1b.mzML at line 689
Opening and ending tag mismatch: binary line 140806 and binaryDataArrayList, line 140819, column 33 (pBsubR23h1b.mzML, line 140819)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152507772-1576933 Batch2_OVCAR8_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/galK_#4_P4D9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (galK_#4_P4D9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150454423-1924427 1_B8_RGT2_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150454423-1924427 1_B8_RGT2_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123224497-1876000 08G02_rep_B_Mizolastinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123224497-1876000 08G02_rep_B_Mizolastinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxC_P3G7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (lpxC_P3G7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET38.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET38.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096940/peak/6_Mouse fecal bacteria EGT metabolism age study_targeted_TAC_35week_EGT-d9 quantification_1.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/560-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lipB_#1_P4C11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (lipB_#1_P4C11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115038270-1875280 12E08_rep_B_Quinapril_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115038270-1875280 12E08_rep_B_Quinapril_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151759305-1576589 Batch3_5637_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw2_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/443.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152719717-1868272 06B08_rep_A_Lamivudinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152719717-1868272 06B08_rep_A_Lamivudinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201125370-1881780 16H05_rep_B_Ceftibutenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201125370-1881780 16H05_rep_B_Ceftibutenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091079/raw/NEG_22.mzML at line 255
Error -3 while decompressing data: invalid stored block lengths
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202014163-1882180 16E11_rep_D_Cefpodoxime_proxetilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202014163-1882180 16E11_rep_D_Cefpodoxime_proxetilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151509049-1576448 Batch7_CORL88_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_84.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_84.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_A4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5E03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/suhB_#1_P4C2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (suhB_#1_P4C2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145610701-1863931 02B04_rep_A_Azacyclonola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145610701-1863931 02B04_rep_A_Azacyclonola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control149_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control149_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121139157-1879345 14B04_rep_D_Pivmecillinam_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121139157-1879345 14B04_rep_D_Pivmecillinam_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Pool_2_B-A2_1_5629.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Wogonin_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223337763-1870089 01F08_rep_B_Benoxinate hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223337763-1870089 01F08_rep_B_Benoxinate hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125752620-1863126 04C06_rep_A_Dimenhydrinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125752620-1863126 04C06_rep_A_Dimenhydrinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125139381-1862822 03F05_rep_C_Gemfibrozila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125139381-1862822 03F05_rep_C_Gemfibrozila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/dtmp_tmk_P4D4_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024914 (dtmp_tmk_P4D4_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121804496-1879635 15F05_rep_B_Ibudilastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121804496-1879635 15F05_rep_B_Ibudilastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_C10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD3_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101703286-1869581 07B08_rep_C_Vancomycin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101703286-1869581 07B08_rep_C_Vancomycin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151426772-1576413 Batch7_CORL88_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190354918-1889813 blankb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153306842-1868539 06H11_rep_B_Closantelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153306842-1868539 06H11_rep_B_Closantelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/006_1022_3_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152551193-1576969 Batch2_RERFLCSQ1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltI_P3D11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (gltI_P3D11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200724950-1881603 16D05_rep_A_Perospironea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200724950-1881603 16D05_rep_A_Perospironea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GH2_01_11561.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C2_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisA_#5_P6F5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (hisA_#5_P6F5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121008448-1879277 14B08_rep_D_Oxprenolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121008448-1879277 14B08_rep_D_Oxprenolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190112_ES_H3K_batch13_repA_188.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person05_plasma_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person05_plasma_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113641246-1922561 2_G11_IZH2_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113641246-1922561 2_G11_IZH2_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121904202-1879680 15A08_rep_B_Valproic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121904202-1879680 15A08_rep_B_Valproic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111626109-1871575 10B01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111626109-1871575 10B01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-059.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-059.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153809040-1577574 Batch7_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/feaB_P3D12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (feaB_P3D12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2A04Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrdD_P3F5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (nrdD_P3F5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210505_LKM_beads30min_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152231210-1576808 Batch2_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR331_5h1b.mzML at line 689
Opening and ending tag mismatch: binary line 98470 and scanWindow, line 98471, column 30 (pBpumR331_5h1b.mzML, line 98471)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3E09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153604548-1577470 Batch4_RT4_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_1_P4A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (ctrl_1_P4A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d1_285_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 18020, column 1 (SysVirol_IFL001_Cal04RG_d1_285_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 18020)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G9_id_MSn_positive.mzML at line 21
index 436 is out of bounds for axis 0 with size 436
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074708.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1K010.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223523820-1870170 01F02_rep_B_Mupirocinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223523820-1870170 01F02_rep_B_Mupirocinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD6_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170125_031EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/7b/d8642ec2fee519e30208267f886123/input_file/MMW6_20170125_031EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130604028-1877539 13B08_rep_C_Zardaverinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130604028-1877539 13B08_rep_C_Zardaverinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121654838-1879582 15A10_rep_A_Rifaximina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121654838-1879582 15A10_rep_A_Rifaximina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_RBC_1h_POS.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer1_RBC_1h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H13_id_negative.mzML at line 21
index 250 is out of bounds for axis 0 with size 250
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHL26.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/387.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170127_061ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/1c/7dbf8fd1f7e39ca28ea92a65e88f55/input_file/SH7_20170127_061ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125828772-1863156 04F01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125828772-1863156 04F01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_27_RIN_52.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_27_RIN_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_122.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_122.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201934646-1882149 16H06_rep_D_Valsartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201934646-1882149 16H06_rep_D_Valsartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/371.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lyxK_P4D5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (lyxK_P4D5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_C10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152116844-1867994 05F11_rep_C_Clebopride_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152116844-1867994 05F11_rep_C_Clebopride_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153102633-1577225 Batch3_SKMEL5_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_63.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J18_id.mzML at line 21
index 605 is out of bounds for axis 0 with size 605
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_C5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_QC6.mzXML at line 689
Premature end of data in tag peaks line 15814, line 15818, column 36330 (L_QC6.mzXML, line 15818)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101946876-1869714 07D11_rep_D_Sulfasalazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101946876-1869714 07D11_rep_D_Sulfasalazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113640045-1874610 11H07_rep_C_Bicalutamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113640045-1874610 11H07_rep_C_Bicalutamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152852757-1868344 06H10_rep_A_Raclopridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152852757-1868344 06H10_rep_A_Raclopridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K16_id.mzML at line 21
index 462 is out of bounds for axis 0 with size 462
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sbp_P4D10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (sbp_P4D10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_39_CNR_30.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_39_CNR_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/309.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYH006.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112220064-1921851 3_A4_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112220064-1921851 3_A4_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153817304-1577581 Batch6_CCRFCEM_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D5_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/NEC1_50EV_RA7_01_22607.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D18_id_MSn_negative.mzML at line 21
index 336 is out of bounds for axis 0 with size 336
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165911397-2227575 pooled.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114555531-1875055 12C10_rep_A_Nabumetoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114555531-1875055 12C10_rep_A_Nabumetoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082691/ccms_peak/ST000662/EX00303-lipidomics/Raw data/NEG/20140614_Authentic.mzXML at line 689
Extra content at the end of the document, line 27649, column 1 (20140614_Authentic.mzXML, line 27649)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_64.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223944525-2227726 PAT40.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argK_#1_P4G11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (argK_#1_P4G11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/22_D24062013T2208_1399CBU_01QC_C1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4A08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152742742-1577062 Batch2_OVCAR4_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075480.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_094b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122024669-1879741 15G10_rep_B_Imiquimodb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122024669-1879741 15G10_rep_B_Imiquimodb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125121069-1876861 12E10_rep_C_Ketorolac_tromethaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125121069-1876861 12E10_rep_C_Ketorolac_tromethaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125303470-1862890 03F01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125303470-1862890 03F01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100244367-1868896 06E03_rep_D_Clobutinol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100244367-1868896 06E03_rep_D_Clobutinol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNP082_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122611533-1880006 15A10_rep_D_Rifaximina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122611533-1880006 15A10_rep_D_Rifaximina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111517887-1921103 1_A5_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111517887-1921103 1_A5_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2E04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125054494-1876842 12G06_rep_C_Salmeterolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125054494-1876842 12G06_rep_C_Salmeterolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151847849-1867874 05G05_rep_C_Probucola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151847849-1867874 05G05_rep_C_Probucola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114051418-1922781 4_B10_STE2_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114051418-1922781 4_B10_STE2_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150846693-1924627 2_B9_RGT2_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150846693-1924627 2_B9_RGT2_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124855288-1862691 03H01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124855288-1862691 03H01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123301425-1876029 08F02_rep_B_Loracarbefb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123301425-1876029 08F02_rep_B_Loracarbefb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pncA_P4C11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (pncA_P4C11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_120_1C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_rerun_BA3_01_11607.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHA09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130231094-1877372 13A07_rep_B_Sotalol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130231094-1877372 13A07_rep_B_Sotalol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_phospho_LFD30_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009554_IBD200_E12_B12.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211206_LKM_mb_beads_nowash_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000092259/peak/Sample0001.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Positive_FGF1_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201801959-1882076 16E06_rep_C_Phenothiazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201801959-1882076 16E06_rep_C_Phenothiazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample115_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092824901-1879014 14H11_rep_B_Nadifloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092824901-1879014 14H11_rep_B_Nadifloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBsubR17_5h1a.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121308502-1879411 15B02_rep_A_Acetylcysteineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121308502-1879411 15B02_rep_A_Acetylcysteineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgaD_#4_P5A4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (pgaD_#4_P5A4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088138/raw/210916_tanaka09.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_44.mzXML at line 689
Premature end of data in tag peaks line 19776, line 19780, column 15939 (20121114_44.mzXML, line 19780)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C1_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180628_ES_H3K_bacth8_repC_108.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151531509-1576466 Batch7_CORL23_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/Blank11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD3_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091710175-1878487 13H08_rep_D_Zalcitabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091710175-1878487 13H08_rep_D_Zalcitabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD1_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125809357-1877173 13H02_rep_A_Halofantrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125809357-1877173 13H02_rep_A_Halofantrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151248064-1924835 3_A11_SNF3_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151248064-1924835 3_A11_SNF3_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yhjH_#5_P3C1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (yhjH_#5_P3C1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/-ve_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202150904-1882255 16A06_rep_D_Doxapram_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202150904-1882255 16A06_rep_D_Doxapram_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123140219-1867758 05G07_rep_B_GBR_12909_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123140219-1867758 05G07_rep_B_GBR_12909_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_G3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ4_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007553_031618-1CRP3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_133_1A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113609314-1922534 2_C7_IZH2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113609314-1922534 2_C7_IZH2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG001B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130646545-1877572 13A04_rep_C_Enilconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130646545-1877572 13A04_rep_C_Enilconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/42-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GG5_01_11548.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121602068-1879541 15A11_rep_A_Estradiol_Valerateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121602068-1879541 15A11_rep_A_Estradiol_Valerateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1110.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153758469-1577565 Batch7_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_126.mzXML at line 689
Premature end of data in tag peaks line 23958, line 23962, column 7747 (20121114_126.mzXML, line 23962)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/231.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007578_031718-5CRP6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d8_277_lipid__Neg_17Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 41777, column 1 (SysVirol_IFL001_1918_d8_277_lipid__Neg_17Sep13_13-07-01.mzXML, line 41777)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223430584-1870129 01G11_rep_B_Tolnaftatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223430584-1870129 01G11_rep_B_Tolnaftatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093006611-1879095 14G10_rep_C_Rifabutinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093006611-1879095 14G10_rep_C_Rifabutinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151502786-1924951 4_B9_SNF3_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151502786-1924951 4_B9_SNF3_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125201453-1876891 12H03_rep_C_Toremifenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125201453-1876891 12H03_rep_C_Toremifenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_B11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_B11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/572-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/005_Urea_Day17_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2L002B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114037350-1874801 11F05_rep_D_Roxithromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114037350-1874801 11F05_rep_D_Roxithromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092822259-1879012 14F11_rep_B_Toltrazurila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092822259-1879012 14F11_rep_B_Toltrazurila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/XYT-13d.mzXML at line 689
Premature end of data in tag peaks line 3000, line 3004, column 3575 (XYT-13d.mzXML, line 3004)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_120_3A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000083595/ccms_peak/HT6.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (HT6.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202243289-1878295 10A01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202243289-1878295 10A01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_RBC_24h_POS.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer2_RBC_24h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201939889-1878151 09D05_rep_D_Nalidixic_acid_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201939889-1878151 09D05_rep_D_Nalidixic_acid_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/BAT_raw files/Lumos_ISAS_BAT_UNLABELED_3.mzML at line 689
Premature end of data in tag spectrumList line 92, line 35744, column 1 (Lumos_ISAS_BAT_UNLABELED_3.mzML, line 35744)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153233727-1577298 Batch5_OVCAR5_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201544377-1877973 09E06_rep_C_Ibutilide_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201544377-1877973 09E06_rep_C_Ibutilide_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170209_020ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/93/756f1f54b1178ae50149acb9891bda/input_file/SH8_20170209_020ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiL_#1_P4H12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (thiL_#1_P4H12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100446235-1868992 06B03_rep_D_Amifostineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100446235-1868992 06B03_rep_D_Amifostineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S01_0124_190125075401.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/XYT-11d.mzXML at line 689
Premature end of data in tag peaks line 4729, line 4733, column 3575 (XYT-11d.mzXML, line 4733)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223035176-1869951 01B03_rep_A_Benzonatatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223035176-1869951 01B03_rep_A_Benzonatatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GB12_01_17035.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K20_id.mzML at line 21
index 577 is out of bounds for axis 0 with size 577
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152722213-1577045 Batch2_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000081119/ccms_peak/Beers19_ms2ldaPLUS/NEGmode/Beer_multibeers_9_fullscan3.mzXML at line 689
Premature end of data in tag peaks line 32623, line 32627, column 15803 (Beer_multibeers_9_fullscan3.mzXML, line 32627)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_A5_id_positive.mzML at line 21
index 324 is out of bounds for axis 0 with size 324
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152521029-1576944 Batch1_NCIH1838_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170125_042EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/f7/155f2e5966566b1f875a6e6958d0c1/input_file/QC_20170125_042EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101841328-1869661 07D04_rep_D_Norcyclobenzaprinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101841328-1869661 07D04_rep_D_Norcyclobenzaprinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_sample04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cyoE_#2_P4A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (cyoE_#2_P4A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_5_P_rep_4_B-A5_1_5637.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101624628-1869549 07G11_rep_C_Parthenolidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101624628-1869549 07G11_rep_C_Parthenolidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C21_id_negative.mzML at line 21
index 236 is out of bounds for axis 0 with size 236
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/892.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpX_P4C8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (glpX_P4C8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lysA_#2_P4H10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (lysA_#2_P4H10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190343000-1889804 Wa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152712550-1577037 Batch2_SW900_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_101.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_110.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111548568-1921515 1_H10_GAP1_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111548568-1921515 1_H10_GAP1_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125558282-1863032 03H10_rep_D_Orphenadrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125558282-1863032 03H10_rep_D_Orphenadrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150354502-1924377 1_E8_RGT2_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150354502-1924377 1_E8_RGT2_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case203_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case203_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152525884-1576948 Batch1_NCIH1838_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_254.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/117.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_C9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike5_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130219257-1877363 13H07_rep_B_Alcuronium_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130219257-1877363 13H07_rep_B_Alcuronium_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100911397-1869205 07C06_rep_A_Metaproterenol_sulfate,_orciprenaline_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100911397-1869205 07C06_rep_A_Metaproterenol_sulfate,_orciprenaline_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlA3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlA3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132918409-1733898 1fb Wound5D 2 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C8_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_C3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample211.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case251_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case251_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152628922-1868233 06G07_rep_A_Efavirenzb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152628922-1868233 06G07_rep_A_Efavirenzb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121705321-1879590 15A01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121705321-1879590 15A01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C12_id_MSn_negative.mzML at line 21
index 267 is out of bounds for axis 0 with size 267
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00073355.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125835825-1863162 04H02_rep_A_Ifenprodil_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125835825-1863162 04H02_rep_A_Ifenprodil_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Pos/P7.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/adhP_P3A5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (adhP_P3A5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/can_P3E6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (can_P3E6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130845963-1877668 13F03_rep_C_Trapidilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130845963-1877668 13F03_rep_C_Trapidilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_215.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153315451-1577332 Batch4_SW780_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122330081-1867369 04C06_rep_D_Dimenhydrinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122330081-1867369 04C06_rep_D_Dimenhydrinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_Batch03_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114916000-1875213 12A05_rep_B_Meglumineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114916000-1875213 12A05_rep_B_Meglumineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151155304-1576287 Batch5_NCIH446_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-3-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G17_id_negative.mzML at line 21
index 253 is out of bounds for axis 0 with size 253
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153020975-1577194 Batch3_647V_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hB2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hB2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxD_P4H12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (lpxD_P4H12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ompA_#2_P3H10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (ompA_#2_P3H10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145648216-1863961 02G01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145648216-1863961 02G01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151739123-1576573 Batch7_RXF393_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S78.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S78.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M8_id.mzML at line 21
index 517 is out of bounds for axis 0 with size 517
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/450.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM6C004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/002_Urea_Day9_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112416101-1921953 3_H10_GPR1_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112416101-1921953 3_H10_GPR1_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_3151_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152054810-1867976 05D07_rep_C_Adenosine_5'-monophosphate_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152054810-1867976 05D07_rep_C_Adenosine_5'-monophosphate_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_G10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102107403-1869780 07A09_rep_D_Dosulepin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102107403-1869780 07A09_rep_D_Dosulepin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079620/ccms_peak/Nick_tuttle_Jensen/160331_noInj_P1-A-12_01_34002.mzXML at line 689
Premature end of data in tag msRun line 3, line 2736, column 1 (160331_noInj_P1-A-12_01_34002.mzXML, line 2736)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_B2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170207_055EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/dc/5543e49349a4711e3da7abbe2ac253/input_file/MMW5_20170207_055EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC09.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112304783-1921890 3_F5_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112304783-1921890 3_F5_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130259100-1877394 13F06_rep_B_Ethamsylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130259100-1877394 13F06_rep_B_Ethamsylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/napC_P4F5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (napC_P4F5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_E6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nanC_P4B12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (nanC_P4B12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpBud1_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112353771-1921933 3_H2_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112353771-1921933 3_H2_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person14_plasma_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person14_plasma_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ6_4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR324h3a.mzML at line 689
Opening and ending tag mismatch: cvray line 108381 and binaryDataArray, line 108386, column 31 (pBpumR324h3a.mzML, line 108386)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114702986-1875107 12D05_rep_B_Estroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114702986-1875107 12D05_rep_B_Estroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdsC_P5D4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (kdsC_P5D4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114459303-1875014 12F07_rep_A_Bephenium_hydroxynaphthoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114459303-1875014 12F07_rep_A_Bephenium_hydroxynaphthoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101803806-1869631 07B06_rep_D_Terconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101803806-1869631 07B06_rep_D_Terconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike5_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_SERUM_V4_SSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230424 - 2-JHU38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202519162-1878418 10C04_rep_A_Medrysonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202519162-1878418 10C04_rep_A_Medrysonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD2_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GC12_01_17049.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091906659-1878580 13H07_rep_D_Alcuronium_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091906659-1878580 13H07_rep_D_Alcuronium_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_D1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3D12_160530162521.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_92.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1105.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ5_8 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/934-B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Buttiauxella_sp_MS2G05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pitB_P3E3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (pitB_P3E3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET60.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET60.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample129_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/293.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaU_P3A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (waaU_P3A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201020495-1881732 16E11_rep_B_Cefpodoxime_proxetilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201020495-1881732 16E11_rep_B_Cefpodoxime_proxetilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_E11_id_negative.mzML at line 21
index 205 is out of bounds for axis 0 with size 205
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152346639-1576868 Batch1_NCIH1437_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123738210-1876251 08D09_rep_C_Xylazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123738210-1876251 08D09_rep_C_Xylazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5A005.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/176-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152828963-1577101 Batch5_HOP92_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/193-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoE_P4E11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (nuoE_P4E11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A1_id_MSn_positive_20240410175902.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100332750-1868934 06H09_rep_D_Felodipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100332750-1868934 06H09_rep_D_Felodipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_011_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153941276-1577652 Batch7_NCIH441_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH61.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111652729-1921570 1_G11_GAP1_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111652729-1921570 1_G11_GAP1_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102008917-1869732 07F05_rep_D_Atovaquoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102008917-1869732 07F05_rep_D_Atovaquoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-145_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122756735-1880088 15F02_rep_D_Topotecana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122756735-1880088 15F02_rep_D_Topotecana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122906884-1867640 05E08_rep_A_Benfluorexa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122906884-1867640 05E08_rep_A_Benfluorexa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K3_id_MSn_positive.mzML at line 21
index 537 is out of bounds for axis 0 with size 537
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151518491-1576455 Batch6_HCC1937_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092645848-1878938 14G11_rep_B_Parbendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092645848-1878938 14G11_rep_B_Parbendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152219941-1576799 Batch2_VMCUB1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078960/ccms_peak/Soce38-Hmix_SPL-6+5_RA1_01_20468.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_77.mzXML at line 689
Premature end of data in tag peaks line 18705, line 18709, column 15940 (20121114_77.mzXML, line 18709)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC05.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_394_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J13_id_negative.mzML at line 21
index 267 is out of bounds for axis 0 with size 267
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114448350-1875005 12D05_rep_A_Estroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114448350-1875005 12D05_rep_A_Estroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094202/ccms_peak/3DMM_pos_raw/Plate9/P9_B1.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095538/raw/3dhq_13C_CE40_msAG231_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024767 (3dhq_13C_CE40_msAG231_Aquity_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152517994-1868178 05C04_rep_D_Desipramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152517994-1868178 05C04_rep_D_Desipramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091653855-1878474 13F09_rep_D_Alprostadila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091653855-1878474 13F09_rep_D_Alprostadila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc7 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201619092-1881998 16A09_rep_C_Enrofloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201619092-1881998 16A09_rep_C_Enrofloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114248909-1922886 4_B8_STE2_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114248909-1922886 4_B8_STE2_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_19090114_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101353278-1869430 07E07_rep_C_Ethionamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101353278-1869430 07E07_rep_C_Ethionamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153806703-1577572 Batch6_NCIH82_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Bosea_LYD011.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/585.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165907088-2227571 Healthy3.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007566_031718-5CRP1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc1_PBST0_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153831371-1577593 Batch6_NCIH526_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5F02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C2_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_131_2C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_QC_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d1_293_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 30570, column 1 (SysVirol_IFT001_1918_d1_293_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 30570)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/004_Soil_WaterIntra_1_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113119385-1922282 1_F5_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113119385-1922282 1_F5_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152101366-1576737 Batch1_HCC38_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_19080521_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/COR1_40EV_RA7_01_22685.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JVE3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190349627-1889809 NNb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122106431-1879773 15D09_rep_B_Granisetronb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122106431-1879773 15D09_rep_B_Granisetronb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/menA_P5F9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024988 (menA_P5F9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132925884-1733904 1pool Skin 3 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124349169-1876549 09B05_rep_A_Benfotiamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124349169-1876549 09B05_rep_A_Benfotiamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153628413-1577490 Batch4_PANC0813_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM2E001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111701916-1921578 1_C3_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111701916-1921578 1_C3_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_19090114_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153419411-1577384 Batch4_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N4_id_MSn_positive.mzML at line 21
index 668 is out of bounds for axis 0 with size 668
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/140-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-138_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112853965-1874284 11H04_rep_A_Theophylline_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112853965-1874284 11H04_rep_A_Theophylline_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GD2_01_12114.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007548_031618-1CRP2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_2_RESV_200uM_POS.mzXML at line 689
attributes construct error, line 38, column 83 (HepG2_2_RESV_200uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_A5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD3_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/livJ_P3H8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (livJ_P3H8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/C48_III_ESI-.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151439734-1576424 Batch6_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150418064026.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K14_id_MSn_positive.mzML at line 21
index 521 is out of bounds for axis 0 with size 521
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123924128-1876336 08G09_rep_C_Benazepril_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123924128-1876336 08G09_rep_C_Benazepril_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHD05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080030/ccms_peak/Forensic_study_80_volunteers/Forensic_Objects_mzXML/Forensic_Objects_plate_D_mzXML/.DS_Store at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093122380-1879150 14F06_rep_C_Cyclopentolate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093122380-1879150 14F06_rep_C_Cyclopentolate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100529354-1869027 06F06_rep_D_Mebhydroline_1,5-naphtalenedisulfonatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100529354-1869027 06F06_rep_D_Mebhydroline_1,5-naphtalenedisulfonatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150440315-1924416 1_F8_RGT2_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150440315-1924416 1_F8_RGT2_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151505333-1924953 4_G7_SNF3_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151505333-1924953 4_G7_SNF3_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082736/ccms_peak/ST000779/EX00375-lipidomics/Raw data/POS/20141113_Test.mzXML at line 689
error parsing attribute name, line 23440, column 17 (20141113_Test.mzXML, line 23440)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike2_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007652_032118-1Thr2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/035_CRa_H9M5_M470_C01_K2_low_pos.mzXML at line 689
Premature end of data in tag peaks line 16645, line 16649, column 36343 (035_CRa_H9M5_M470_C01_K2_low_pos.mzXML, line 16649)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O20_id_MSn_positive.mzML at line 21
index 388 is out of bounds for axis 0 with size 388
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201502206-1881943 16F07_rep_C_Flumethasone_pivalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201502206-1881943 16F07_rep_C_Flumethasone_pivalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224238374-1870505 01H11_rep_D_Trimethobenzamide hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224238374-1870505 01H11_rep_D_Trimethobenzamide hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201951443-1882162 16G02_rep_D_Epirubicin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201951443-1882162 16G02_rep_D_Epirubicin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111726400-1871622 10C01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111726400-1871622 10C01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Pseudomonas_aeruginosa_PAnmFLR01_02.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_134b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/thrL_thrC_P6F8_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024912 (thrL_thrC_P6F8_Aquity_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_120_2B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150639012-1864903 02D09_rep_C_Nalbuphine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150639012-1864903 02D09_rep_C_Nalbuphine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224101405-1870429 01E02_rep_D_Procaine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224101405-1870429 01E02_rep_D_Procaine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A21_id_MSn_negative.mzML at line 21
index 265 is out of bounds for axis 0 with size 265
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_130.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113343887-1922408 2_B4_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113343887-1922408 2_B4_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111734022-1871628 10G05_rep_B_Bendroflumethiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111734022-1871628 10G05_rep_B_Bendroflumethiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/111.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152307420-1868079 05H06_rep_D_Amikacin_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152307420-1868079 05H06_rep_D_Amikacin_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/005_Urea_Day2_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_G7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101444970-1869471 07H06_rep_C_Nifuroxazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101444970-1869471 07H06_rep_C_Nifuroxazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202221510-1882279 16H10_rep_D_Desonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202221510-1882279 16H10_rep_D_Desonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114804371-1875155 12B04_rep_B_Felbinacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114804371-1875155 12B04_rep_B_Felbinacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092520/peak/SIO_1D-DOM_20.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000092520/peak/SIO_1D-DOM_20.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151420813-1576408 Batch7_NCIH1734_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample168.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_36.mzXML at line 689
Premature end of data in tag peaks line 19674, line 19678, column 11843 (20121114_36.mzXML, line 19678)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hD3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hD3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_19090114_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153039077-1868424 06B01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153039077-1868424 06B01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J20_id_MSn_negative.mzML at line 21
index 355 is out of bounds for axis 0 with size 355
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201546431-1881973 16H11_rep_C_Cefprozila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201546431-1881973 16H11_rep_C_Cefprozila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/161-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122731613-1867564 05B03_rep_A_Practolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122731613-1867564 05B03_rep_A_Practolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112103642-1921785 2_F1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112103642-1921785 2_F1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009679_IBD200_E21_B6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086335/ccms_peak/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Diaporthe CarGL-8A/M8A2E_a.mzML at line 689
Extra content at the end of the document, line 65147, column 2 (M8A2E_a.mzML, line 65147)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_F2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153456306-1577414 Batch4_NCIH2342_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/231.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113010152-1922226 1_F1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113010152-1922226 1_F1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M18_id_MSn_positive_20240503130918.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_sample07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1319.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1319.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_B6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201729428-1882051 16E03_rep_C_Anagrelidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201729428-1882051 16E03_rep_C_Anagrelidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223144152-1870003 01G07_rep_B_Minaprine dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223144152-1870003 01G07_rep_B_Minaprine dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/002_Urea_Day9_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAJ15.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GB12_01_16928.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1T4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1T4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202006812-1882174 16H08_rep_D_Triclabendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202006812-1882174 16H08_rep_D_Triclabendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151146614-1924782 3_A3_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151146614-1924782 3_A3_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111638857-1871585 10C03_rep_B_Sulfamethizolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111638857-1871585 10C03_rep_B_Sulfamethizolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124538561-1876635 09F06_rep_A_Venlafaxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124538561-1876635 09F06_rep_A_Venlafaxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2E01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tolC_P3B11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (tolC_P3B11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151431456-1576417 Batch7_HOP62_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2A02P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100822601-1869166 07D10_rep_A_Imipenemb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100822601-1869166 07D10_rep_A_Imipenemb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8F04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007657_032118-1Thr3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_F6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_F6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007507_031618-0.01Thr1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086335/raw/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Arroz - MSConvert/05Apos.mzML at line 689
error parsing attribute name, line 11859, column 149 (05Apos.mzML, line 11859)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151837870-1576621 Batch7_NCIH2444_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095538/raw/2mecdp_13C_CE20_msAG252_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024762 (2mecdp_13C_CE20_msAG252_Aquity_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C5_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D4_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125831195-1863158 04D08_rep_A_Labetalol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125831195-1863158 04D08_rep_A_Labetalol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101900086-1869676 07G01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101900086-1869676 07G01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfH_#3_P4C6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (hyfH_#3_P4C6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Bosea_sp_LYA002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_37_RIN_40.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_37_RIN_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152121724-1576753 Batch1_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151633101-1925022 4_G1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151633101-1925022 4_G1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8G05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101604005-1869532 07D03_rep_C_Iohexolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101604005-1869532 07D03_rep_C_Iohexolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_C9_id_positive.mzML at line 21
index 297 is out of bounds for axis 0 with size 297
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/copA_#1_P5G4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (copA_#1_P5G4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201122189-1877783 09G07_rep_B_Chlorcyclizine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201122189-1877783 09G07_rep_B_Chlorcyclizine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114134314-1874847 11D01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114134314-1874847 11D01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sapD_P3G6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (sapD_P3G6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125923284-1863202 04F03_rep_A_Trazodone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125923284-1863202 04F03_rep_A_Trazodone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/221.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/378.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ12171432.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202036185-1878195 09E03_rep_D_Secnidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202036185-1878195 09E03_rep_D_Secnidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113704694-1874630 11C08_rep_C_Propantheline_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113704694-1874630 11C08_rep_C_Propantheline_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085507/ccms_peak/raw/F20200314sunr_COVID_b3_14.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (F20200314sunr_COVID_b3_14.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124914119-1862706 03B05_rep_B_Alverine_citrate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124914119-1862706 03B05_rep_B_Alverine_citrate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_104.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/PDI-flfl-plasma-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wcaH_P4B2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (wcaH_P4B2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122434876-1879931 15G02_rep_C_Gatifloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122434876-1879931 15G02_rep_C_Gatifloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J16_id_MSn_negative.mzML at line 21
index 346 is out of bounds for axis 0 with size 346
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-qc_low (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150947010-1924679 2_D8_RGT2_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150947010-1924679 2_D8_RGT2_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_C10_id_positive.mzML at line 21
index 335 is out of bounds for axis 0 with size 335
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152344102-1576866 Batch2_NCIH460_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI4b_3_20_1_889.mzML at line 689
AttValue: " or ' expected, line 4187591, column 59 (50130_microPOTS_Rat_Brain_ROI4b_3_20_1_889.mzML, line 4187591)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lptC_#1_P4B8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (lptC_#1_P4B8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_G2_id_positive.mzML at line 21
index 398 is out of bounds for axis 0 with size 398
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sgbE_#2_P5D12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (sgbE_#2_P5D12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control29_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control29_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_A3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121421081-1879466 15D02_rep_A_5-fluorouracila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121421081-1879466 15D02_rep_A_5-fluorouracila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_08P_A5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092435716-1878836 14B01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092435716-1878836 14B01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151134494-1576270 Batch5_LUDLU1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114016918-1922751 3_C1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114016918-1922751 3_C1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180901_ES_H3K_batch1_repA_4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_169.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201218_LKM_all_wash_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111618218-1871569 10H09_rep_B_Dienestrola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111618218-1871569 10H09_rep_B_Dienestrola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093123703-1879151 14F06_rep_C_Cyclopentolate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093123703-1879151 14F06_rep_C_Cyclopentolate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123205697-1875985 08G03_rep_B_Amisulprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123205697-1875985 08G03_rep_B_Amisulprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201328913-1881873 16H06_rep_B_Valsartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201328913-1881873 16H06_rep_B_Valsartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1056.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113758276-1922628 3_H9_STE2_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113758276-1922628 3_H9_STE2_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_A11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112155839-1921830 3_G10_GPR1_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112155839-1921830 3_G10_GPR1_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/4.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102029719-1869749 07F03_rep_D_Grepafloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102029719-1869749 07F03_rep_D_Grepafloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101816101-1869641 07B03_rep_D_Nitrofurala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101816101-1869641 07B03_rep_D_Nitrofurala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114001457-1922737 3_G5_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114001457-1922737 3_G5_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E9_id_MSn_negative.mzML at line 21
index 304 is out of bounds for axis 0 with size 304
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fdoH_P5E4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (fdoH_P5E4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180821_ES_H3K_batch10_repA_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114021531-1922755 3_B5_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114021531-1922755 3_B5_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30073 - GI-14-554.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/22_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112527213-1874120 10H09_rep_D_Dienestrola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112527213-1874120 10H09_rep_D_Dienestrola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ytfT_#2_P4D11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (ytfT_#2_P4D11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR124h3a.mzML at line 689
attributes construct error, line 28099, column 36 (pMIBSDR124h3a.mzML, line 28099)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_11_blood_RESV_skin_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_11_blood_RESV_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_E3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/cal_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_105.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111950147-1921722 2_G7_GAP1_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111950147-1921722 2_G7_GAP1_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122150863-1867289 04A05_rep_D_Glutethimide,_para-aminob.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122150863-1867289 04A05_rep_D_Glutethimide,_para-aminob.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_G2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223418723-1870120 01G01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223418723-1870120 01G01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_G3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/212-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_A9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_A9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223644717-1870232 01G02_rep_C_Morantel tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223644717-1870232 01G02_rep_C_Morantel tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124138696-1862228 03F04_rep_A_Fenspiride_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124138696-1862228 03F04_rep_A_Fenspiride_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151417383-1924912 4_E1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151417383-1924912 4_E1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125127929-1876866 12D10_rep_C_Bacitracinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125127929-1876866 12D10_rep_C_Bacitracinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202314453-1878320 10E07_rep_A_Tinidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202314453-1878320 10E07_rep_A_Tinidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-117_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152617598-1868224 06H05_rep_A_Fentiazaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152617598-1868224 06H05_rep_A_Fentiazaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1539.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1539.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_C9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J17_id_MSn_positive.mzML at line 21
index 676 is out of bounds for axis 0 with size 676
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124817183-1876725 12B05_rep_C_Butylparabenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124817183-1876725 12B05_rep_C_Butylparabenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG18.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112955063-1874331 11H06_rep_B_Reserpineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112955063-1874331 11H06_rep_B_Reserpineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202449662-1878395 10E09_rep_A_Vidarabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202449662-1878395 10E09_rep_A_Vidarabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151023025-1865077 02F03_rep_D_Loxapine succinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151023025-1865077 02F03_rep_D_Loxapine succinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152535987-1868192 05G05_rep_D_Probucola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152535987-1868192 05G05_rep_D_Probucola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124533192-1876631 09A09_rep_A_Nilvadipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124533192-1876631 09A09_rep_A_Nilvadipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_116.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_116.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130236094-1877376 13B05_rep_B_Pronethalol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130236094-1877376 13B05_rep_B_Pronethalol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_A6_id_negative.mzML at line 21
index 196 is out of bounds for axis 0 with size 196
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120902771-1879227 14C04_rep_D_Naftifine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120902771-1879227 14C04_rep_D_Naftifine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_08P_A4_id_positive.mzML at line 21
index 377 is out of bounds for axis 0 with size 377
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125552212-1863027 03H03_rep_D_Scopolamin-N-oxide_hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125552212-1863027 03H03_rep_D_Scopolamin-N-oxide_hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082740/ccms_peak/ST000695/EX00355/Raw data/Untargeted/POS/HumanPlasmaExtraction.mzXML at line 689
Extra content at the end of the document, line 72292, column 1 (HumanPlasmaExtraction.mzXML, line 72292)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121835906-1879659 15C01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121835906-1879659 15C01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/FIL1_20EV_RA1_01_22628.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8C04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/leuC_P5A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (leuC_P5A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112807574-1922156 4_C9_GPR1_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112807574-1922156 4_C9_GPR1_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ3_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_53_CNR_54.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_53_CNR_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114519666-1875029 12C09_rep_A_Ethynodiol_diacetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114519666-1875029 12C09_rep_A_Ethynodiol_diacetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J12_id_negative.mzML at line 21
index 288 is out of bounds for axis 0 with size 288
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_G6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088017/ccms_peak/12300-WT2-15_Treffon-009.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000096035/peak/Brain/B5xfad_26.mzML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (B5xfad_26.mzML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_rerun_A5_BA5_01_12033.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123028972-1867703 05D02_rep_B_Chlorthalidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123028972-1867703 05D02_rep_B_Chlorthalidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.gris_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR131_5h2a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 33365, column 1169 (pBlateR131_5h2a.mzML, line 33365)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153142365-1577257 Batch4_NCIH1651_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153450454-1868621 06D03_rep_C_Corticosteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153450454-1868621 06D03_rep_C_Corticosteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075699.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR17_5h1a.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_11_P4A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (ctrl_11_P4A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O8_id_MSn_positive.mzML at line 21
index 550 is out of bounds for axis 0 with size 550
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mtgA_P4A5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (mtgA_P4A5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153954421-1577663 Batch6_K562_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D8_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092027899-1878643 13B03_rep_D_THIP_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092027899-1878643 13B03_rep_D_THIP_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lptA_#4_P5D6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (lptA_#4_P5D6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM6W003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603154003959-1577671 Batch6_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BoseaUncultured_LYD017.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093209119-1879188 14F10_rep_C_Nialamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093209119-1879188 14F10_rep_C_Nialamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152545155-1576964 Batch1_CALU6_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122227673-1867318 04G03_rep_D_Lincomycin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122227673-1867318 04G03_rep_D_Lincomycin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GB8_01_17030.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124949090-1862734 03F10_rep_C_Ketoprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124949090-1862734 03F10_rep_C_Ketoprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/BeautyProducts_Vol4/BP9_01_17317.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/2.5_VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_A8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125713814-1877130 13G08_rep_A_Tocainide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125713814-1877130 13G08_rep_A_Tocainide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/004_Nitrate_Day11_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007663_032118-1Thr6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111833225-1921657 2_D7_GAP1_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111833225-1921657 2_D7_GAP1_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_A2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210119_LKM_yeast_nBut_50to1_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/entD_P3D8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (entD_P3D8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112433286-1874077 10G03_rep_D_Podophyllotoxinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112433286-1874077 10G03_rep_D_Podophyllotoxinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100320165-1868924 06G08_rep_D_Rifapentineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100320165-1868924 06G08_rep_D_Rifapentineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210119_LKM_yeast_nBut_50to1_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-055_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223939793-2227722 PAT39.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cirA_P3E4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (cirA_P3E4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_036EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e6/73eca8439e71419579fdd054ae4e50/input_file/QC_20170207_036EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152704305-1868260 06E09_rep_A_Hydroxytacrine_maleate_(R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152704305-1868260 06E09_rep_A_Hydroxytacrine_maleate_(R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113320642-1922387 1_F11_IZH2_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113320642-1922387 1_F11_IZH2_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152324120-1576850 Batch2_NCIH358_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092117703-1878681 14E09_rep_A_(+,-)-Synephrineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092117703-1878681 14E09_rep_A_(+,-)-Synephrineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/psd_#2_P4G4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (psd_#2_P4G4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_72_CNR_50.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_72_CNR_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_F5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES190.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mglA_P3C4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (mglA_P3C4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114219629-1922860 4_D5_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114219629-1922860 4_D5_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G18_id.mzML at line 21
index 563 is out of bounds for axis 0 with size 563
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124302078-1876510 08G02_rep_D_Mizolastinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124302078-1876510 08G02_rep_D_Mizolastinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/434.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_E11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_0123_190123204504.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlC1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlC1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152855899-1577124 Batch3_HT1197_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092855983-1879039 14H10_rep_C_Clocortolone_pivalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092855983-1879039 14H10_rep_C_Clocortolone_pivalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151743835-1576577 Batch3_NCIH2228_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GF1_01_16846.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000083302/peak/mzxml/S43_BA5_01_40312.mzXML at line 689
Unescaped '<' not allowed in attributes values, line 5512, column 23753 (S43_BA5_01_40312.mzXML, line 5512)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153455409-1868625 06B06_rep_C_Modafinilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153455409-1868625 06B06_rep_C_Modafinilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151725905-1576562 Batch4_DU145_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124010739-1876373 08D01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124010739-1876373 08D01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_E12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_G9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100429382-1868979 06H03_rep_D_Itopridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100429382-1868979 06H03_rep_D_Itopridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151101266-1865107 02H08_rep_D_Gallamine triethiodideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151101266-1865107 02H08_rep_D_Gallamine triethiodideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096497/peak/20201110_ProgressCurveAnalysis_GltA_set6_eff5_t8_rep2.mzML at line 689
Premature end of data in tag binary line 1897, line 1897, column 58631 (20201110_ProgressCurveAnalysis_GltA_set6_eff5_t8_rep2.mzML, line 1897)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_G7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/ControlC21_neg.mzXML at line 689
attributes construct error, line 37, column 72 (ControlC21_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112103353-1873044 10E02_rep_C_Butambena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112103353-1873044 10E02_rep_C_Butambena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU49.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082760/ccms_peak/MTBLS198/raw/MTBLS198/JALI118DietC_V2.mzXML at line 689
Premature end of data in tag peaks line 9382, line 9386, column 130543 (JALI118DietC_V2.mzXML, line 9386)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_male_2022_1017_Michael_neg-0008.mzML at line 689
Premature end of data in tag binary line 7773, line 7773, column 770095 (pooled_male_2022_1017_Michael_neg-0008.mzML, line 7773)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trkH_P3D12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (trkH_P3D12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D3_preFOS_2_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/196-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123211465-1867783 05A02_rep_B_Streptomycin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123211465-1867783 05A02_rep_B_Streptomycin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydcV_#2_P4A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ydcV_#2_P4A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.gha_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/52-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ2_5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180912_ES_H3K_batch2_repA_21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S1cells_3_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_78.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101752953-1869622 07G04_rep_D_Betahistine_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101752953-1869622 07G04_rep_D_Betahistine_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122504438-1879954 15E07_rep_C_Sparfloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122504438-1879954 15E07_rep_C_Sparfloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/6.5_4OI _VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw6_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009471_IBD200_E8_B8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M7_id_MSn_positive.mzML at line 21
index 510 is out of bounds for axis 0 with size 510
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_G3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uxaB_#1_P5B12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (uxaB_#1_P5B12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_140.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F21_id.mzML at line 21
index 593 is out of bounds for axis 0 with size 593
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112610213-1922052 4_E9_GPR1_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112610213-1922052 4_E9_GPR1_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gadA_#1_P4C10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (gadA_#1_P4C10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201109125-1881768 16H03_rep_B_Pemetrexed_disodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201109125-1881768 16H03_rep_B_Pemetrexed_disodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E8_id_MSn_negative.mzML at line 21
index 335 is out of bounds for axis 0 with size 335
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112223613-1921854 3_F3_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112223613-1921854 3_F3_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J13_id_MSn_positive.mzML at line 21
index 497 is out of bounds for axis 0 with size 497
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121314535-1866885 04A01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121314535-1866885 04A01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wbbH_P5B3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (wbbH_P5B3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170209_017ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/90/2869603d43a0ce1650f37da5691bd1/input_file/SH9_20170209_017ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112722585-1922116 4_C2_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112722585-1922116 4_C2_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122301460-1879860 15A01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122301460-1879860 15A01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl 1_P3A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024957 (ctrl 1_P3A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD1_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD1_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153121387-1577240 Batch3_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114030856-1922763 3_E7_STE2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114030856-1922763 3_E7_STE2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI5_3_10_1_879.mzML at line 689
AttValue: ' expected, line 8830425, column 141 (50130_microPOTS_Rat_Brain_ROI5_3_10_1_879.mzML, line 8830425)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control106_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control106_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_06_RIN_51.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_06_RIN_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potC_#1_P3A2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (potC_#1_P3A2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgi_#1_P6E4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (pgi_#1_P6E4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glgP_P3G7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (glgP_P3G7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ANT2_30EV_RA5_01_22514.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201811984-1878084 09B04_rep_D_Mepenzolate_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201811984-1878084 09B04_rep_D_Mepenzolate_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D14_id_MSn_negative.mzML at line 21
index 296 is out of bounds for axis 0 with size 296
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113742424-1874660 11F04_rep_C_Liothyroninea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113742424-1874660 11F04_rep_C_Liothyroninea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153726852-1868747 06H09_rep_C_Felodipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153726852-1868747 06H09_rep_C_Felodipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153533487-1868655 06D04_rep_C_Cyanocobalaminb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153533487-1868655 06D04_rep_C_Cyanocobalaminb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_19071524_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/378.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/004_Nitrate_Day2_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Blank_pesticide_170403061522.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152850062-1577119 Batch3_EPLC272H_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tnaB_P4D8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (tnaB_P4D8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_C8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ygbL_P4G2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (ygbL_P4G2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092551921-1878896 14F05_rep_B_Sulfadoxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092551921-1878896 14F05_rep_B_Sulfadoxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092437049-1878837 14B01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092437049-1878837 14B01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124706516-1862604 03G06_rep_B_Nifenazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124706516-1862604 03G06_rep_B_Nifenazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_5_P_rep_4_B-A5_1_5509.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Blank_pesticide_170404115826.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR231_5h2a.mzML at line 689
Opening and ending tag mismatch: spectrum line 35624 and scanWindow, line 35630, column 30 (pBlateR231_5h2a.mzML, line 35630)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180916_ES_H3K_batch2_repC_28.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_117b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151248404-1576331 Batch5_NCIH345_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210328_AD_81.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151936365-1576670 Batch1A_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L17_id_MSn_positive.mzML at line 21
index 514 is out of bounds for axis 0 with size 514
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample204.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_3153_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124728023-1862621 03C05_rep_B_Methocarbamolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124728023-1862621 03C05_rep_B_Methocarbamolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argB_#4_P5D2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (argB_#4_P5D2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201534330-1881964 16C01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201534330-1881964 16C01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123633619-1876200 08B05_rep_C_Dacarbazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123633619-1876200 08B05_rep_C_Dacarbazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_A12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_263.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120942277-1879257 14G07_rep_D_Meropenemb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120942277-1879257 14G07_rep_D_Meropenemb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091707637-1878485 13C10_rep_D_Chlormadinone_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091707637-1878485 13C10_rep_D_Chlormadinone_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/46-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_sample08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_185.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/001_Nitrate_Day0_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092017476-1878635 13C11_rep_D_Phenylbutazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092017476-1878635 13C11_rep_D_Phenylbutazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine62cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine62cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_A8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_39.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_39.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124414700-1876570 09E01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124414700-1876570 09E01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_sp_WTHF07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K18_id_MSn_positive.mzML at line 21
index 645 is out of bounds for axis 0 with size 645
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample064.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151826969-1576612 Batch3_NCIH2228_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hA2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hA2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F20_id_MSn_negative.mzML at line 21
index 324 is out of bounds for axis 0 with size 324
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150850231-1924630 2_C3_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150850231-1924630 2_C3_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_blank_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125323623-1876954 12A01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125323623-1876954 12A01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100308331-1868915 06C04_rep_D_Carisoprodola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100308331-1868915 06C04_rep_D_Carisoprodola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30085 - GI-16-041.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121810562-1867114 04G10_rep_C_Amodiaquin_dihydrochloride_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121810562-1867114 04G10_rep_C_Amodiaquin_dihydrochloride_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/16FEB2021 Column3_test_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113615081-1874590 11D09_rep_C_Iocetamic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113615081-1874590 11D09_rep_C_Iocetamic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/232.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ubiD_P3B4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (ubiD_P3B4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125148344-1876881 12C04_rep_C_Diloxanide_furoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125148344-1876881 12C04_rep_C_Diloxanide_furoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112054401-1921777 2_D4_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112054401-1921777 2_D4_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/647.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100516061-1869016 06G03_rep_D_Cefiximeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100516061-1869016 06G03_rep_D_Cefiximeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086152/peak/Peak_List_Files/WSU_Sleep_SC_E059_day_F_L_001_Neg_27Aug18_Brandi-WCSH7803.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (WSU_Sleep_SC_E059_day_F_L_001_Neg_27Aug18_Brandi-WCSH7803.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152732508-1868282 06G03_rep_A_Cefiximea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152732508-1868282 06G03_rep_A_Cefiximea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ribC_P3F1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ribC_P3F1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201004197-1877726 09H01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201004197-1877726 09H01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J12_id_MSn_positive.mzML at line 21
index 639 is out of bounds for axis 0 with size 639
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153423107-1577387 Batch5_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151803221-1867839 05C08_rep_C_Thioguanosineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151803221-1867839 05C08_rep_C_Thioguanosineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/413.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12only_Replicate3_Level1_MSMS_neg.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_128.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009444_IBD200_E6_A9.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123832321-1876294 08H04_rep_C_Thiorphana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123832321-1876294 08H04_rep_C_Thiorphana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisI_#2_P4A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (hisI_#2_P4A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124848985-1862686 03H04_rep_B_Hyoscyamine_(L)_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124848985-1862686 03H04_rep_B_Hyoscyamine_(L)_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112649153-1874185 11B10_rep_A_Moxalactam_disodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112649153-1874185 11B10_rep_A_Moxalactam_disodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murI_P3G2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (murI_P3G2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152355375-1576875 Batch1_HX147_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082728/ccms_peak/ST000661/EX00264-lipidomics/Raw data/POS/20140730_POOLED.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD5_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223005282-1869929 01E01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223005282-1869929 01E01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD074_P1-A-3_01_3256.mzML at line 689
Opening and ending tag mismatch: activation line 397254 and binaryDataArray, line 397257, column 31 (CD074_P1-A-3_01_3256.mzML, line 397257)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223752749-2227629 PAT47.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mepS_P3E10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (mepS_P3E10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glcA_#3_P5F12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (glcA_#3_P5F12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153754859-1577562 Batch6_SF268_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201009738-1877730 09A10_rep_B_Etanidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201009738-1877730 09A10_rep_B_Etanidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152258294-1868072 05A09_rep_D_Zoxazolaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152258294-1868072 05A09_rep_D_Zoxazolaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_76.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_A4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1K007.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170209_016ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/87/dc1a9d9772e632185be2f90d0b684d/input_file/SH8_20170209_016ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R23h1a.mzML at line 689
Opening and ending tag mismatch: binary line 42316 and binaryDataArray, line 42321, column 31 (pBlichMO17R23h1a.mzML, line 42321)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201948843-1882160 16E09_rep_D_Homoveratrylamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201948843-1882160 16E09_rep_D_Homoveratrylamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_H1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101337082-1869417 07C10_rep_B_Bromperidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101337082-1869417 07C10_rep_B_Bromperidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A21_id_MSn_negative.mzML at line 21
index 271 is out of bounds for axis 0 with size 271
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113947942-1874761 11H08_rep_D_Scopolamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113947942-1874761 11H08_rep_D_Scopolamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095328/peak/MS_RAW_data/230811_BBT301_TPP_HighPH_5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111722589-1871619 10D11_rep_B_Pipenzolate_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111722589-1871619 10D11_rep_B_Pipenzolate_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_H5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD141_P2-B-7_01_2716.mzML at line 255
Error -3 while decompressing data: invalid stored block lengths
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130632450-1877561 13E10_rep_C_Pivampicillina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130632450-1877561 13E10_rep_C_Pivampicillina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151645281-1576528 Batch7_CAL51_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/829.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009765_IBD200_E23_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E12_id.mzML at line 21
index 551 is out of bounds for axis 0 with size 551
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122853281-1875832 08B04_rep_A_Troglitazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122853281-1875832 08B04_rep_A_Troglitazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrfB_P4G5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (nrfB_P4G5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_83.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_F18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100221416-1868878 06C06_rep_D_Chicago_sky_blue_6Bb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100221416-1868878 06C06_rep_D_Chicago_sky_blue_6Bb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D16_id_MSn_positive.mzML at line 21
index 432 is out of bounds for axis 0 with size 432
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/blank_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_18_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121358621-1866918 04H03_rep_B_Flunarizine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121358621-1866918 04H03_rep_B_Flunarizine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kduI_P4E8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (kduI_P4E8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_56.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_rerun_GA1_01_11582.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101229744-1869363 07F05_rep_B_Atovaquonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101229744-1869363 07F05_rep_B_Atovaquonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Debaryomyces_hansenii_02.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E16_id_MSn_positive.mzML at line 21
index 729 is out of bounds for axis 0 with size 729
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/875.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GE4_01_17072.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/272.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113325407-1874492 11E03_rep_B_Trimeprazine_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113325407-1874492 11E03_rep_B_Trimeprazine_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trkA_P3F4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (trkA_P3F4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151355306-1576387 Batch6_RPMI8226_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ampH_#2_P4D3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (ampH_#2_P4D3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-047.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-047.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_F7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200707378-1881590 16B06_rep_A_Pantoprazole_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200707378-1881590 16B06_rep_A_Pantoprazole_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_C10_id_negative.mzML at line 21
index 282 is out of bounds for axis 0 with size 282
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_63.mzXML at line 689
Premature end of data in tag peaks line 20286, line 20290, column 11843 (20121114_63.mzXML, line 20290)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pck_P3B8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (pck_P3B8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124542996-1876638 09G02_rep_A_Trihexyphenidyl-D,L_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124542996-1876638 09G02_rep_A_Trihexyphenidyl-D,L_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151634753-1576519 Batch7_MIAPACA2_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G7_id_MSn_negative.mzML at line 21
index 301 is out of bounds for axis 0 with size 301
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211206_LKM_mb_control_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_61.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_187.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100621026-1869068 07F10_rep_A_Thiocolchicosideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100621026-1869068 07F10_rep_A_Thiocolchicosideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/artI_P3H1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (artI_P3H1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J11_id_MSn_negative.mzML at line 21
index 329 is out of bounds for axis 0 with size 329
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112237447-1921866 3_B7_GPR1_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112237447-1921866 3_B7_GPR1_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152811276-1577086 Batch3_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210112_AD_39.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J4_id_negative.mzML at line 21
index 252 is out of bounds for axis 0 with size 252
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/526-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_P16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111908978-1872569 10C10_rep_C_Isoetharine_mesylate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111908978-1872569 10C10_rep_C_Isoetharine_mesylate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101645286-1869566 07F07_rep_C_(S)-(-)-Atenololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101645286-1869566 07F07_rep_C_(S)-(-)-Atenololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_C8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113442442-1874517 11G08_rep_C_Paromomycin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113442442-1874517 11G08_rep_C_Paromomycin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151651477-1925038 4_A5_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151651477-1925038 4_A5_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1785.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1785.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_36.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_36.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114335014-1874945 12B11_rep_A_Methylatropine_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114335014-1874945 12B11_rep_A_Methylatropine_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152412010-1576888 Batch2_VMCUB1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125159181-1862838 03A07_rep_C_Mafenide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125159181-1862838 03A07_rep_C_Mafenide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case60_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case60_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121854166-1867148 04C04_rep_C_Doxepin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121854166-1867148 04C04_rep_C_Doxepin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_7_B-A2_1_5832.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1K005.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130014271-1877269 13D08_rep_A_Fluticasone_propionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130014271-1877269 13D08_rep_A_Fluticasone_propionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_1_Liver_HO_control_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_1_Liver_HO_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_16061440_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/amn_#1_P5G1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (amn_#1_P5G1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/031_CRa_H9M5_M470_H01_K3_high_pos.mzXML at line 689
Premature end of data in tag peaks line 18640, line 18644, column 40438 (031_CRa_H9M5_M470_H01_K3_high_pos.mzXML, line 18644)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-018.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-018.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD2_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152713779-1577038 Batch2_LOXIMVI_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ7_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_15102011_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100230496-1868885 06G02_rep_D_Tropisetron_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100230496-1868885 06G02_rep_D_Tropisetron_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223923962-1870355 01B03_rep_C_Benzonatatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223923962-1870355 01B03_rep_C_Benzonatatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_89.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_high (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD5_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_131_3C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/PseudomonasUncultured_MADAA03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate18/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K13_id_MSn_negative.mzML at line 21
index 344 is out of bounds for axis 0 with size 344
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fabZ_#1_P4F8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (fabZ_#1_P4F8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_AP_3.mzXML at line 689
Premature end of data in tag peaks line 2742, line 2746, column 15853 (L_AP_3.mzXML, line 2746)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151319661-1576357 Batch7_HOP62_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170209_057ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/2a/82b7b194cbefca744b9c2f9cc6fc57/input_file/MMW3_20170209_057ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_E4_id_positive.mzML at line 21
index 332 is out of bounds for axis 0 with size 332
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS310Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151052235-1924735 3_H5_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151052235-1924735 3_H5_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C7_id_MSn_negative.mzML at line 21
index 315 is out of bounds for axis 0 with size 315
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D10_id.mzML at line 21
index 518 is out of bounds for axis 0 with size 518
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122025940-1879742 15D11_rep_B_Lamotriginea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122025940-1879742 15D11_rep_B_Lamotriginea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fre_P4C2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (fre_P4C2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124942304-1876788 12F02_rep_C_Propofola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124942304-1876788 12F02_rep_C_Propofola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhtB_P3F3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (rhtB_P3F3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_C7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_G10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152457624-1868162 05G11_rep_D_Fusidic_acid_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152457624-1868162 05G11_rep_D_Fusidic_acid_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113346832-1874509 11B09_rep_B_Nadololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113346832-1874509 11B09_rep_B_Nadololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151021658-1924709 3_G1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151021658-1924709 3_G1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-105_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111854938-1872077 10G03_rep_C_Podophyllotoxinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111854938-1872077 10G03_rep_C_Podophyllotoxinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153141118-1577256 Batch4_NCIH1651_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114830335-1875176 12E11_rep_B_Protriptyline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114830335-1875176 12E11_rep_B_Protriptyline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111523401-1871527 10G09_rep_B_Hexylcaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111523401-1871527 10G09_rep_B_Hexylcaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121923174-1879694 15B03_rep_B_Melengestrol_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121923174-1879694 15B03_rep_B_Melengestrol_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125641151-1877105 12H11_rep_D_Aminocaproic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125641151-1877105 12H11_rep_D_Aminocaproic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124432437-1862366 03H09_rep_A_Lomefloxacin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124432437-1862366 03H09_rep_A_Lomefloxacin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G6_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample055.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S01_0126_190128212249.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093217913-1879195 14D11_rep_C_Methiazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093217913-1879195 14D11_rep_C_Methiazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092518693-1878870 14C03_rep_B_Ioxaglic_acid_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092518693-1878870 14C03_rep_B_Ioxaglic_acid_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/oppB_P4B5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (oppB_P4B5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/(4-chloro-2-methylphenoxy)acetic_acid_neg.mzXML at line 689
Premature end of data in tag peaks line 9687, line 9691, column 15852 ((4-chloro-2-methylphenoxy)acetic_acid_neg.mzXML, line 9691)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case241_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case241_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_plasma_1h_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer4_plasma_1h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083442/ccms_peak/mzXMLs/181221_COM13_D592_RPMI_New_Column/mzxml/+COM13_Samp12_TP4_RB4_01_19246.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000083442/ccms_peak/mzXMLs/181221_COM13_D592_RPMI_New_Column/mzxml/+COM13_Samp12_TP4_RB4_01_19246.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100437101-1868985 06H10_rep_D_Raclopridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100437101-1868985 06H10_rep_D_Raclopridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100953777-1869238 07G01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100953777-1869238 07G01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101926050-1869697 07H11_rep_D_Prenylamine_lactatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101926050-1869697 07H11_rep_D_Prenylamine_lactatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/amiA_P3A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (amiA_P3A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084666/raw/InterSpec_SppSwarms/00385_eugene-4.mzXML at line 689
Premature end of data in tag peaks line 11814, line 11814, column 77881 (00385_eugene-4.mzXML, line 11814)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114149568-1922833 4_A3_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114149568-1922833 4_A3_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170207_050EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/76/ba1b391ae673a61f68ebc37685393e/input_file/MMW5_20170207_050EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3C05_160530113951.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_1_RESV_200uM_NEG.mzXML at line 689
attributes construct error, line 38, column 83 (HepG2_1_RESV_200uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_161.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-037_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007543_031618-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1428.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1428.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124520053-1862403 03A07_rep_A_Mafenide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124520053-1862403 03A07_rep_A_Mafenide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GH4_01_11563.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_D4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-CCM-PA-QC-15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202500087-1878403 10A09_rep_A_Sulfadimethoxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202500087-1878403 10A09_rep_A_Sulfadimethoxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S71.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S71.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample225.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112712630-1922107 4_G10_GPR1_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112712630-1922107 4_G10_GPR1_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw_Baseline_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082795/ccms_peak/raw/MTBLS428/mtab_VentDOM_tsq_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082795/ccms_peak/raw/MTBLS428/mtab_VentDOM_tsq_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201440872-1881927 16D06_rep_C_Cefpiramidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201440872-1881927 16D06_rep_C_Cefpiramidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114014679-1922749 3_G11_STE2_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114014679-1922749 3_G11_STE2_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007572_031718-5CRP3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-150_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_18092931_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000092259/ccms_peak/Sample0004.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124204226-1862248 03A06_rep_A_Ethosuximideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124204226-1862248 03A06_rep_A_Ethosuximideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_Extracellular/mzML/NEx_Baicalin_2_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222857615-1869878 01B05_rep_A_Sulfacetamide sodic hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222857615-1869878 01B05_rep_A_Sulfacetamide sodic hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190118_ES_H3K_batch14_repB_209.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122814092-1867599 05G11_rep_A_Fusidic_acid_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122814092-1867599 05G11_rep_A_Fusidic_acid_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122434698-1867421 04A02_rep_D_Mexiletine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122434698-1867421 04A02_rep_D_Mexiletine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125132003-1876869 12A01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125132003-1876869 12A01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6G05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153342801-1577354 Batch5_NCIH1650_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151737902-1576572 Batch7_RXF393_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mmuP_#1_P5G11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (mmuP_#1_P5G11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113822414-1874692 11G11_rep_C_Luteolina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113822414-1874692 11G11_rep_C_Luteolina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092704754-1878952 14B09_rep_B_Ondansetron_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092704754-1878952 14B09_rep_B_Ondansetron_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/107_95.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165931949-2227594 pooled.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GC7_01_17044.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145953873-1864111 02E01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145953873-1864111 02E01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114407504-1922956 4_C8_STE2_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114407504-1922956 4_C8_STE2_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150427339-1864801 02G04_rep_C_Chlorhexidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150427339-1864801 02G04_rep_C_Chlorhexidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V6_LH_PSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/GNPS-Nudibranch/Data-MS2/Converted/Standard_3.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121315789-1866886 04D05_rep_B_Prednisolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121315789-1866886 04D05_rep_B_Prednisolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009576_IBD200_E14_B6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153758469-1577565 Batch7_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/423.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223600022-1870198 01G01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223600022-1870198 01G01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I14_id_MSn_negative.mzML at line 21
index 325 is out of bounds for axis 0 with size 325
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113840544-1922665 3_F11_STE2_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113840544-1922665 3_F11_STE2_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114908611-1875207 12H01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114908611-1875207 12H01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153048674-1577214 Batch3_PANC0403_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD6_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_plasma_1h_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer2_plasma_1h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153747144-1868763 06H04_rep_C_Cefotetanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153747144-1868763 06H04_rep_C_Cefotetanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_AP_1.mzXML at line 689
Premature end of data in tag peaks line 2172, line 2176, column 7657 (L_AP_1.mzXML, line 2176)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_33_CNR_50.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_33_CNR_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD6_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mscL_P3H9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (mscL_P3H9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I21_id_negative.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/124-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N22_id_negative.mzML at line 21
index 244 is out of bounds for axis 0 with size 244
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_178.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123121194-1867743 05H08_rep_B_Clomiphene_citrate_(Z,E)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123121194-1867743 05H08_rep_B_Clomiphene_citrate_(Z,E)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_E5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_E5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F22_id_MSn_positive.mzML at line 21
index 542 is out of bounds for axis 0 with size 542
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_B4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202215341-1878273 10C09_rep_A_Monensin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202215341-1878273 10C09_rep_A_Monensin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123938074-1876347 08C04_rep_D_Papaverine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123938074-1876347 08C04_rep_D_Papaverine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person05_RBC_elder_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Person05_RBC_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/001_Nitrate_Day4_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170127_013ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/87/b86f84962535b8fb61bf1b0461c3d3/input_file/MMW3_20170127_013ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/PYURF interactome/PYURF_MBP1_CEV_07122029.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_07_NOR_51.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_07_NOR_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085476/raw/AfricanAmerican_03_neg.mzXML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S05_dilute_190131181942.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBmegR124h2a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_AW1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100404205-1868959 06C01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100404205-1868959 06C01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_08P_A4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GH12_01_11760.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I4_id_MSn_positive.mzML at line 21
index 711 is out of bounds for axis 0 with size 711
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/163-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_A6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_113b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100243047-1868895 06E03_rep_D_Clobutinol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100243047-1868895 06E03_rep_D_Clobutinol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151116529-1865119 02B02_rep_D_Khellinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151116529-1865119 02B02_rep_D_Khellinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1124.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151430264-1576416 Batch7_HOP62_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121406651-1879455 15C07_rep_A_Candesartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121406651-1879455 15C07_rep_A_Candesartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125454380-1877023 12B02_rep_D_Cortisol_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125454380-1877023 12B02_rep_D_Cortisol_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A4_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210115_AD_18.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GC2_01_16805.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ampG_#3_P3F2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (ampG_#3_P3F2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine76.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine76.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223449795-1870144 01B02_rep_B_Meticraneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223449795-1870144 01B02_rep_B_Meticraneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glmM_P4B10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (glmM_P4B10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207133009669-1733938 1fb Wound5D 1 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151450452-1576433 Batch7_KM12_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_71.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_71.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202430627-1878380 10F03_rep_A_Leflunomidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202430627-1878380 10F03_rep_A_Leflunomidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_35_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_35_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Blank_1_B-A1_1_5498.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD6_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_35_male_2022_1017_Michael_neg-0.0061.mzML at line 689
Premature end of data in tag binary line 20377, line 20377, column 2184594 (4_35_male_2022_1017_Michael_neg-0.0061.mzML, line 20377)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hC2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hC2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101043345-1869278 07D09_rep_B_Budesonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101043345-1869278 07D09_rep_B_Budesonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_plasma_24h_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer1_plasma_24h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_A5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_24_Dorsal_skin_EtOH_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_24_Dorsal_skin_EtOH_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/243.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000084666/raw/InterSpec_SppSwarms/00244_poutre.mzXML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/TAA040_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223057951-1869968 01A02_rep_A_Azaguanine-8b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223057951-1869968 01A02_rep_A_Azaguanine-8b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122916944-1867648 05D01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122916944-1867648 05D01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123101454-1867727 05F09_rep_B_Bezafibrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123101454-1867727 05F09_rep_B_Bezafibrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trxB_P3C7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (trxB_P3C7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172704213-1889918 Na.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152539874-1868195 05B08_rep_D_Procainamide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152539874-1868195 05B08_rep_D_Procainamide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH40.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112238581-1921867 3_B7_GPR1_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112238581-1921867 3_B7_GPR1_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-014_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124212593-1876470 08H09_rep_D_Dexfenfluramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124212593-1876470 08H09_rep_D_Dexfenfluramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124647765-1862589 03D07_rep_B_Pentoxifyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124647765-1862589 03D07_rep_B_Pentoxifyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_53.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD3_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101349492-1869427 07B03_rep_C_Nitrofurala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101349492-1869427 07B03_rep_C_Nitrofurala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/001_Nitrate_Day14_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_B1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153201228-1577272 Batch4_A427_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3F06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153558484-1577465 Batch4_NCIH2342_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007698_032218-5CRP4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A13_id_negative.mzML at line 21
index 261 is out of bounds for axis 0 with size 261
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A1_black_P1-A-6_01_22957.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153211776-1868496 06F01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153211776-1868496 06F01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C6_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pfkA_#1_P6D7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (pfkA_#1_P6D7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124831340-1862672 03E03_rep_B_Tiratricol,_3,3',5-triiodothyroacetic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124831340-1862672 03E03_rep_B_Tiratricol,_3,3',5-triiodothyroacetic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/901.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_02_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_02_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130501281-1877489 13D07_rep_B_Prothionamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130501281-1877489 13D07_rep_B_Prothionamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124101673-1876413 08E06_rep_D_Carbadoxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124101673-1876413 08E06_rep_D_Carbadoxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBsubR37_5h3a.mzML at line 689
Opening and ending tag mismatch: binary line 28276 and binaryDataArray, line 28278, column 31 (pBsubR37_5h3a.mzML, line 28278)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124841409-1862680 03F11_rep_B_Indapamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124841409-1862680 03F11_rep_B_Indapamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180417_ES_batch6_pWT_a.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/76.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123039367-1875915 08F06_rep_A_(-)-Emtricitabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123039367-1875915 08F06_rep_A_(-)-Emtricitabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M12_id_negative.mzML at line 21
index 278 is out of bounds for axis 0 with size 278
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_C8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yihO_P3D1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (yihO_P3D1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD6_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N19_id_negative.mzML at line 21
index 238 is out of bounds for axis 0 with size 238
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084666/raw/InterSpec_SppSwarms/00355_psycpi.mzXML at line 88
Invalid base64-encoded string: number of data characters (48161) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHF05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_16.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_16.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hA1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hA1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075239.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122234706-1867324 04D01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122234706-1867324 04D01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112806504-1922155 4_F2_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112806504-1922155 4_F2_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112536068-1874127 10H02_rep_D_(R)_-Naproxen_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112536068-1874127 10H02_rep_D_(R)_-Naproxen_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_64_CNR_47.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_64_CNR_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/LiLi-6d.mzXML at line 689
Premature end of data in tag peaks line 27244, line 27248, column 3574 (LiLi-6d.mzXML, line 27248)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150501848-1864828 02A10_rep_C_Busulfana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150501848-1864828 02A10_rep_C_Busulfana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112859619-1922203 4_G9_GPR1_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112859619-1922203 4_G9_GPR1_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hchA_P3B5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (hchA_P3B5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/thmmp_thiL_P4H12_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (thmmp_thiL_P4H12_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_0123_190124020037.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_19032901_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G12Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR27_5h2a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_sample04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_1_B_rep_1_B-D2_1_5663.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ltaE_#2_P4A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (ltaE_#2_P4A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122346962-1879895 15F03_rep_C_Atorvastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122346962-1879895 15F03_rep_C_Atorvastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084666/raw/InterSpec_SppSwarms/1318blank01.mzXML at line 689
Premature end of data in tag peaks line 4253, line 4253, column 2095 (1318blank01.mzXML, line 4253)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/srlA_#1_P4D7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (srlA_#1_P4D7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603154000392-1577668 Batch6_SF539_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control185_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control185_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYB008.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD6_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123057563-1867724 05C10_rep_B_Ritodrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123057563-1867724 05C10_rep_B_Ritodrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD6_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007529_031618-1Thr2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_D2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202132320-1878239 09C07_rep_D_Nisoldipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202132320-1878239 09C07_rep_D_Nisoldipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111953539-1872604 10G02_rep_C_Clobetasol_propionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111953539-1872604 10G02_rep_C_Clobetasol_propionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201126256-1877786 09D08_rep_B_Thiamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201126256-1877786 09D08_rep_B_Thiamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1350.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1350.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089617/ccms_peak/HR_Control_Replicate2_20210102063749.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153618410-1868691 06H11_rep_C_Closantelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153618410-1868691 06H11_rep_C_Closantelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113823663-1874693 11G11_rep_C_Luteolinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113823663-1874693 11G11_rep_C_Luteolinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151014017-1865070 02H10_rep_D_Dihydrostreptomycin sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151014017-1865070 02H10_rep_D_Dihydrostreptomycin sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114824275-1875171 12D01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114824275-1875171 12D01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0027_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_76.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153545315-1577454 Batch4_SKOV3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5H12_160602175417.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Blank_pesticide_Swabs_170405213057.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/speD_P4E11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (speD_P4E11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS206P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_C11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151027710-1924714 3_H4_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151027710-1924714 3_H4_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113957867-1874769 11C09_rep_D_Viloxazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113957867-1874769 11C09_rep_D_Viloxazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/006_Ammonia_Day7_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_135.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ05151563.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112414460-1874062 10F09_rep_D_Proadifen_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112414460-1874062 10F09_rep_D_Proadifen_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD6_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD1_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112343446-1874037 10A06_rep_D_Deferoxamine_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112343446-1874037 10A06_rep_D_Deferoxamine_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122302305-1867346 04E10_rep_D_Pyrilamine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122302305-1867346 04E10_rep_D_Pyrilamine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBmegR224h3a.mzML at line 689
Opening and ending tag mismatch: binaryDataArray line 270744 and binary, line 270747, column 852 (pBmegR224h3a.mzML, line 270747)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124846424-1862684 03F06_rep_B_Mefexamide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124846424-1862684 03F06_rep_B_Mefexamide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/536-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/037_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111824424-1872053 10D11_rep_C_Pipenzolate_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111824424-1872053 10D11_rep_C_Pipenzolate_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/50-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082718/ccms_peak/peak/ST000666/EX00376-lipidomics/Raw data/NEG/20141119_Pooled.mzXML at line 689
error parsing attribute name, line 12095, column 5 (20141119_Pooled.mzXML, line 12095)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potB_#1_P4B2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (potB_#1_P4B2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_93.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_93.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007546_031618-1CRP1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydaM_P3C5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (ydaM_P3C5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM6W004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (22).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222914866-1869891 01F03_rep_A_Carbamazepinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222914866-1869891 01F03_rep_A_Carbamazepinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_A9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123429756-1876101 08E07_rep_B_Rimantadine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123429756-1876101 08E07_rep_B_Rimantadine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNT360_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_F7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101350837-1869428 07B03_rep_C_Nitrofuralb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101350837-1869428 07B03_rep_C_Nitrofuralb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample31n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metQ_#2_P4E5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (metQ_#2_P4E5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_177.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130000853-1863234 04D04_rep_A_Cortisonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130000853-1863234 04D04_rep_A_Cortisonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132935605-1733912 1pool Wound5D 3 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/270.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F16_id_negative.mzML at line 21
index 235 is out of bounds for axis 0 with size 235
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GA5_01_16906.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170127_067ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/72/fa4447287362d5fec2ceb9368c2fd2/input_file/MMW6_20170127_067ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190118_ES_H3K_batch14_repB_212.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152157224-1868026 05A10_rep_C_Tacrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152157224-1868026 05A10_rep_C_Tacrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J7_id_MSn_positive.mzML at line 21
index 645 is out of bounds for axis 0 with size 645
Error processing file: /data/datasets/server/MassIVE/MSV000081039/ccms_peak/raw/MTBLS293/mtab_R1_Dyhram_2014_1017_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009418_IBD200_E5_A3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2G05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170127_038ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/59/19e7cffca868ad7fb9e897a3e1fde1/input_file/MMW5_20170127_038ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151131596-1924769 3_E1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151131596-1924769 3_E1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114018721-1874786 11A07_rep_D_Trimipramine_maleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114018721-1874786 11A07_rep_D_Trimipramine_maleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1075.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121437086-1879478 15D07_rep_A_Enoxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121437086-1879478 15D07_rep_A_Enoxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GB11_01_17258.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093145809-1879169 14D06_rep_C_(R)-Propranolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093145809-1879169 14D06_rep_C_(R)-Propranolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/203.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_G3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_RBC_4h_NEG.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer2_RBC_4h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172725214-1889933 NNb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-faux.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145951381-1864109 02F02_rep_B_Glipizidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145951381-1864109 02F02_rep_B_Glipizidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Microminospora_schwarzwaldensis_BM2Q03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/742.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202032453-1882194 16C10_rep_D_Ethoxzolamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202032453-1882194 16C10_rep_D_Ethoxzolamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A14_id_MSn_positive.mzML at line 21
index 427 is out of bounds for axis 0 with size 427
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_04_dorsal_skin_RESV_oral_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_04_dorsal_skin_RESV_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhtB_P3F3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (rhtB_P3F3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_221.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/CORN_AAW5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123906010-1876321 08H09_rep_C_Dexfenfluramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123906010-1876321 08H09_rep_C_Dexfenfluramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_E6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_E6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A21_id_MSn_positive.mzML at line 21
index 613 is out of bounds for axis 0 with size 613
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153722947-1868744 06E04_rep_C_Gabazine_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153722947-1868744 06E04_rep_C_Gabazine_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123227127-1876002 08H10_rep_B_Etoricoxiba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123227127-1876002 08H10_rep_B_Etoricoxiba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_G6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYH006.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121653754-1867053 04E03_rep_B_Fenoterol_hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121653754-1867053 04E03_rep_B_Fenoterol_hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122009207-1867207 04G03_rep_C_Lincomycin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122009207-1867207 04G03_rep_C_Lincomycin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_A4_id_negative.mzML at line 21
index 255 is out of bounds for axis 0 with size 255
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201216_LKM_Hydrophilic_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121342125-1866906 04A06_rep_B_Dropropizine_(R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121342125-1866906 04A06_rep_B_Dropropizine_(R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G22_id_MSn_negative.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNH099_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123003386-1875887 08A01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123003386-1875887 08A01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151532691-1576467 Batch7_CORL23_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/280.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200605593-1881544 16B05_rep_A_Tegaserod_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200605593-1881544 16B05_rep_A_Tegaserod_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172636027-1889897 Wb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_2_P4A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (ctrl_2_P4A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GG1_01_12163.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD6_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130310928-1877403 13G05_rep_B_Nifurtimoxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130310928-1877403 13G05_rep_B_Nifurtimoxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J17_id_MSn_negative.mzML at line 21
index 329 is out of bounds for axis 0 with size 329
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1368.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1368.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087808/raw/RIGHT_SSL_EI_sleep_STER_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1627.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1627.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ubiD_P3B4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (ubiD_P3B4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR27_5h1a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 135170, column 1316 (pMIBSDR27_5h1a.mzML, line 135170)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152051222-1867973 05H03_rep_C_Ketanserin_tartrate_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152051222-1867973 05H03_rep_C_Ketanserin_tartrate_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113525115-1922496 2_A5_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113525115-1922496 2_A5_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094430/ccms_metadata/summary.tsv at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007650_032118-1Thr1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4G05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2A10Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8H07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_E6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/TAA204_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121050015-1879308 14E06_rep_D_Topiramatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121050015-1879308 14E06_rep_D_Topiramatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190124210609.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201151639-1877804 09G10_rep_B_Trioxsalena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201151639-1877804 09G10_rep_B_Trioxsalena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124726741-1862620 03C05_rep_B_Methocarbamola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124726741-1862620 03C05_rep_B_Methocarbamola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_C5_01_12201.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151856719-1867881 05G06_rep_C_Mitoxantrone_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151856719-1867881 05G06_rep_C_Mitoxantrone_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/proP_#1_P3H6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (proP_#1_P3H6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123646194-1876210 08F08_rep_C_Quipazine_dimaleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123646194-1876210 08F08_rep_C_Quipazine_dimaleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_4_P_rep_4_B-A6_1_5825.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152501695-1576928 Batch2_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125441291-1877013 12A10_rep_D_Diacereina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125441291-1877013 12A10_rep_D_Diacereina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/258.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112159698-1873569 10B11_rep_D_Ebselena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112159698-1873569 10B11_rep_D_Ebselena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151025670-1865079 02A05_rep_D_Moroxidine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151025670-1865079 02A05_rep_D_Moroxidine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_C3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MicrolunatusUncultured_LYG008.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112822039-1922169 4_D5_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112822039-1922169 4_D5_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094756/peak/02_TO_mLiver_Sup_C18_neg.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152200751-1576784 Batch2_NCIH520_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152234961-1576811 Batch1_NCIH1993_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121902814-1879679 15C05_rep_B_Carprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121902814-1879679 15C05_rep_B_Carprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150819133-1924603 2_A7_RGT2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150819133-1924603 2_A7_RGT2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glnP_P3F8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (glnP_P3F8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1144.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1144.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153805598-1577571 Batch6_SF268_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124207545-1876466 08G10_rep_D_Aniracetama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124207545-1876466 08G10_rep_D_Aniracetama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike2_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153825624-1577588 Batch6_DU4475_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009392_IBD200_E3_A7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100810933-1869157 07A01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100810933-1869157 07A01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101048255-1869282 07A04_rep_B_Rofecoxibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101048255-1869282 07A04_rep_B_Rofecoxibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223853244-2227682 PAT41.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101027041-1869265 07F02_rep_B_Pirenperonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101027041-1869265 07F02_rep_B_Pirenperonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_MICU_082_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F16_id_MSn_positive.mzML at line 21
index 614 is out of bounds for axis 0 with size 614
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152552396-1576970 Batch2_NCIH647_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201359829-1881896 16F06_rep_B_Rasagilineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201359829-1881896 16F06_rep_B_Rasagilineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202342404-1878342 10G10_rep_A_Drofenine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202342404-1878342 10G10_rep_A_Drofenine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170125_044EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/d8/5f93a54e4a548ff6b9d7be8e87473a/input_file/MMW6_20170125_044EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091624537-1878452 13D01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091624537-1878452 13D01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpTen1_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_A11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100623443-1869070 07D04_rep_A_Norcyclobenzaprineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100623443-1869070 07D04_rep_A_Norcyclobenzaprineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/835.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_132a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P8_id_MSn_negative.mzML at line 21
index 362 is out of bounds for axis 0 with size 362
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151820334-1867852 05A06_rep_C_Ascorbic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151820334-1867852 05A06_rep_C_Ascorbic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4B07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D2_postFOS_3_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222821422-1869851 01F02_rep_A_Mupirocina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222821422-1869851 01F02_rep_A_Mupirocina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H22_id_MSn_negative.mzML at line 21
index 285 is out of bounds for axis 0 with size 285
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B21_id_MSn_negative.mzML at line 21
index 292 is out of bounds for axis 0 with size 292
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person24_blood_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 83 (Person24_blood_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ndk_#1_P6D5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (ndk_#1_P6D5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075409.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101640440-1869562 07G04_rep_C_Betahistine_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101640440-1869562 07G04_rep_C_Betahistine_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S42.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S42.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201635249-1878011 09G01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201635249-1878011 09G01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_E2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085693/ccms_peak/MRM-validation cohort/BC MRM 9th batch.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5D01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153929472-1577642 Batch7_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153551288-1577459 Batch4_PANC0813_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170125_031EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/0f/4e2ea0c92af66f66096dda8a22dc82/input_file/MMW6_20170125_031EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114843659-1875187 12E09_rep_B_Nilutamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114843659-1875187 12E09_rep_B_Nilutamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-043_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102109795-1869782 07C06_rep_D_Metaproterenol_sulfate,_orciprenaline_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102109795-1869782 07C06_rep_D_Metaproterenol_sulfate,_orciprenaline_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124954525-1876797 12H10_rep_C_Proparacaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124954525-1876797 12H10_rep_C_Proparacaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_A10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A12_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092821015-1879011 14G03_rep_B_Fexofenadine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092821015-1879011 14G03_rep_B_Fexofenadine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151054766-1865102 02H04_rep_D_Didanosinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151054766-1865102 02H04_rep_D_Didanosinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/dhorS_pyrD_P4G9_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 224, column 10032602 (dhorS_pyrD_P4G9_Aquity_neg.mzXML, line 224)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121451311-1866958 04F10_rep_B_Mifepristonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121451311-1866958 04F10_rep_B_Mifepristonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_138.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lgoD_P3H11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (lgoD_P3H11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alaA_P4F10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (alaA_P4F10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200700362-1881585 16E11_rep_A_Cefpodoxime_proxetila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200700362-1881585 16E11_rep_A_Cefpodoxime_proxetila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125115680-1862803 03H02_rep_C_Etodolacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125115680-1862803 03H02_rep_C_Etodolacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_14_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_14_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M5_id.mzML at line 21
index 605 is out of bounds for axis 0 with size 605
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/treB_P3A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (treB_P3A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100402965-1868958 06B09_rep_D_Biotinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100402965-1868958 06B09_rep_D_Biotinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113150151-1922309 1_C4_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113150151-1922309 1_C4_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101656108-1869575 07C03_rep_C_Biperiden_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101656108-1869575 07C03_rep_C_Biperiden_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E7_id_MSn_negative.mzML at line 21
index 353 is out of bounds for axis 0 with size 353
Error processing file: /data/datasets/server/MassIVE/MSV000085122/peak/15.mzXML at line 255
Error -3 while decompressing data: invalid distance too far back
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130109662-1877309 13A09_rep_B_Decamethonium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130109662-1877309 13A09_rep_B_Decamethonium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151143152-1924779 3_A8_SNF3_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151143152-1924779 3_A8_SNF3_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111546494-1871545 10B02_rep_B_Sulfaquinoxaline_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111546494-1871545 10B02_rep_B_Sulfaquinoxaline_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122130764-1879791 15B08_rep_B_Carvedilolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122130764-1879791 15B08_rep_B_Carvedilolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151558867-1924993 4_D4_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151558867-1924993 4_D4_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223207811-1870021 01C01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223207811-1870021 01C01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200631160-1881563 16F08_rep_A_Lofepraminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200631160-1881563 16F08_rep_A_Lofepraminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_24_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_24_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_sp_WTHI02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yjeH_#1_P4F11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (yjeH_#1_P4F11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_B5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H12_id_MSn_positive.mzML at line 21
index 518 is out of bounds for axis 0 with size 518
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/1.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/blank_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_H5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/528-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_16.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_16.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GF7_01_11708.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/004_Nitrate_Day17_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_41_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_41_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/talB_#5_P5C7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (talB_#5_P5C7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ1_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113411193-1922432 2_H8_IZH2_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113411193-1922432 2_H8_IZH2_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130725239-1877603 13D02_rep_C_Gliquidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130725239-1877603 13D02_rep_C_Gliquidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH21.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/31-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112411934-1874060 10B01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112411934-1874060 10B01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ssuB_P3G3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (ssuB_P3G3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152956010-1577175 Batch3_SU8686_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ1_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/chbF_P3F10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (chbF_P3F10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E22_id_MSn_positive.mzML at line 21
index 625 is out of bounds for axis 0 with size 625
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET121.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET121.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113757714-1874672 11E05_rep_C_Procyclidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113757714-1874672 11E05_rep_C_Procyclidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3C10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E10_id_MSn_negative.mzML at line 21
index 298 is out of bounds for axis 0 with size 298
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/647.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152137999-1576766 Batch2_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151522065-1576458 Batch6_NCIH1838_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_F8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/entE_#2_P5F4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (entE_#2_P5F4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202537785-1878433 10H09_rep_A_Dienestrolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202537785-1878433 10H09_rep_A_Dienestrolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GE12_01_16843.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_C7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113534828-1874558 11E09_rep_C_Iodixanola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113534828-1874558 11E09_rep_C_Iodixanola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123213040-1875991 08A02_rep_B_Ziprasidone__Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123213040-1875991 08A02_rep_B_Ziprasidone__Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113734883-1874654 11E06_rep_C_Amiprilose_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113734883-1874654 11E06_rep_C_Amiprilose_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123040513-1875916 08H04_rep_A_Thiorphana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123040513-1875916 08H04_rep_A_Thiorphana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_B4_01_12199.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007556_031618-1CRP4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA15.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000091760/raw/TC7_pellet.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wecF_P5F4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (wecF_P5F4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151935226-1576669 Batch1A_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.hyg_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B16_id_MSn_negative.mzML at line 21
index 302 is out of bounds for axis 0 with size 302
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114046970-1922777 3_D1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114046970-1922777 3_D1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152658319-1577025 Batch1_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_sample02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C21_id_negative.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130824770-1877651 13A05_rep_C_Methacycline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130824770-1877651 13A05_rep_C_Methacycline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091631460-1878457 13G01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091631460-1878457 13G01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091838080-1878557 13B04_rep_D_Pirlindole_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091838080-1878557 13B04_rep_D_Pirlindole_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/550-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHL22.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007662_032118-1Thr6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111519478-1871524 10H10_rep_B_Pridinol_methanesulfonate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111519478-1871524 10H10_rep_B_Pridinol_methanesulfonate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124235864-1876489 08D09_rep_D_Xylazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124235864-1876489 08D09_rep_D_Xylazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224336345-1870551 01G03_rep_D_Homatropine hydrobromide (R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224336345-1870551 01G03_rep_D_Homatropine hydrobromide (R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202207547-1882268 16H04_rep_D_Raltitrexedb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202207547-1882268 16H04_rep_D_Raltitrexedb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121754418-1867101 04F05_rep_C_Pimethixene_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121754418-1867101 04F05_rep_C_Pimethixene_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_G4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113720007-1874642 11H03_rep_C_Iopromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113720007-1874642 11H03_rep_C_Iopromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metI_P6E7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (metI_P6E7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudK_P3C10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (nudK_P3C10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092948627-1879081 14G05_rep_C_Clonixin_Lysinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092948627-1879081 14G05_rep_C_Clonixin_Lysinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ispU_P3D1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (ispU_P3D1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/14_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Hono_Glu_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200547804-1881531 16F10_rep_A_Besifloxacin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200547804-1881531 16F10_rep_A_Besifloxacin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1K018.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I4_id_MSn_positive.mzML at line 21
index 343 is out of bounds for axis 0 with size 343
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2A05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STE2_MS_RA4_01_22580.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_F2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample175_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH13.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V6_EDTAk2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/DEX-plasma-VLDL-8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8B03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151129309-1865129 02H09_rep_D_Neomycin sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151129309-1865129 02H09_rep_D_Neomycin sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113244708-1874459 11D03_rep_B_Cefoxitin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113244708-1874459 11D03_rep_B_Cefoxitin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092104990-1878671 14D04_rep_A_Bethanechol_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092104990-1878671 14D04_rep_A_Bethanechol_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_C6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/scpB_P3H2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (scpB_P3H2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150755732-1924583 2_D5_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150755732-1924583 2_D5_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/602.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G1_id.mzML at line 21
index 585 is out of bounds for axis 0 with size 585
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_19_CNR_48.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_19_CNR_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_elow (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_D8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122158311-1867295 04A07_rep_D_Pinacidilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122158311-1867295 04A07_rep_D_Pinacidilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122955638-1875881 08C06_rep_A_Voriconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122955638-1875881 08C06_rep_A_Voriconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112313894-1921898 3_B1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112313894-1921898 3_B1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/norV_#2_P3F3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (norV_#2_P3F3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130039385-1863264 04A03_rep_A_Flavoxate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130039385-1863264 04A03_rep_A_Flavoxate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4B03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O17_id_MSn_negative.mzML at line 21
index 325 is out of bounds for axis 0 with size 325
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150600934-1924484 1_A4_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150600934-1924484 1_A4_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aaeB_P4C8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (aaeB_P4C8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GE7_01_11519.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112645268-1874182 11E08_rep_A_(-)_-Levobunolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112645268-1874182 11E08_rep_A_(-)_-Levobunolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2C09Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151215893-1576304 Batch5_NCIH345_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_G9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_C4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152441418-1868150 05A01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152441418-1868150 05A01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111447710-1921077 1_E9_GAP1_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111447710-1921077 1_E9_GAP1_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case13_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case13_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_G3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201202503-1881808 16C01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201202503-1881808 16C01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152933607-1577156 Batch3_PANC0327_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201737647-1878058 09C03_rep_C_D,L-Penicillaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201737647-1878058 09C03_rep_C_D,L-Penicillaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/CPV_P_rep_3_B-E7_1_5679.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124451546-1862381 03H04_rep_A_Hyoscyamine_(L)_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124451546-1862381 03H04_rep_A_Hyoscyamine_(L)_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/001_CRa_H9M5_M470_Blank_01_low_pos.mzXML at line 689
Premature end of data in tag peaks line 10318, line 10322, column 32247 (001_CRa_H9M5_M470_Blank_01_low_pos.mzXML, line 10322)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_A8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_E12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/FIL2_20EV_RA3_01_22495.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153355082-1577364 Batch3_KU1919_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_G2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ7_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113330563-1874496 11G05_rep_B_Methylhydantoin-5-(D)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113330563-1874496 11G05_rep_B_Methylhydantoin-5-(D)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101612889-1869539 07A02_rep_C_Serotonin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101612889-1869539 07A02_rep_C_Serotonin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152846598-1577116 Batch3_ACHN_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_208.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control169_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control169_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1H08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114759222-1875151 12C09_rep_B_Ethynodiol_diacetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114759222-1875151 12C09_rep_B_Ethynodiol_diacetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125323243-1862906 03C03_rep_C_Levamisole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125323243-1862906 03C03_rep_C_Levamisole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_08P_C3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007485_031618-Unst1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_D2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xylA_P3A4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (xylA_P3A4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151015807-1924704 3_A4_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151015807-1924704 3_A4_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151417207-1576405 Batch7_SUM149PT_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114314021-1874928 12A06_rep_A_Dolasetron_mesilatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114314021-1874928 12A06_rep_A_Dolasetron_mesilatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/allA_P3A4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (allA_P3A4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person30_RBC_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 81 (Person30_RBC_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG12.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EBM013.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123729339-1876244 08G01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123729339-1876244 08G01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ycjU_P3A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (ycjU_P3A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike4_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111820442-1872050 10H08_rep_C_Methotrimeprazine_maleat_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111820442-1872050 10H08_rep_C_Methotrimeprazine_maleat_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170127_043ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/6e/0d2a0a1c74f7f39312d29ac9130684/input_file/SH7_20170127_043ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_D9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202348586-1878347 10E05_rep_A_Furaltadone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202348586-1878347 10E05_rep_A_Furaltadone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132953567-1733926 1pool Skin 1 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-CCM-PA-water-03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_22.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_22.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/016_100uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150418103346.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_105a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phoE_P3B12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (phoE_P3B12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-qc_med.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124505181-1876611 09B09_rep_A_Suxibuzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124505181-1876611 09B09_rep_A_Suxibuzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130838290-1877662 13D01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130838290-1877662 13D01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122903499-1875840 08G03_rep_A_Amisulpridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122903499-1875840 08G03_rep_A_Amisulpridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_123.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cycA_#1_P4D2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (cycA_#1_P4D2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc1_PBST24_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_E7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_E9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_97.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/L-thialysine.mzXML at line 689
Premature end of data in tag peaks line 5367, line 5371, column 28136 (L-thialysine.mzXML, line 5371)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GF12_01_11714.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-064_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_87.mzXML at line 689
Premature end of data in tag peaks line 33053, line 33057, column 15937 (20121114_87.mzXML, line 33057)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Hymenobacter_LYG014A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD5_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/006_1022_1_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152745033-1577064 Batch1_769P_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101325939-1869408 07F11_rep_B_Clorsulonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101325939-1869408 07F11_rep_B_Clorsulonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_131.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123216834-1875994 08B09_rep_B_Ropinirole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123216834-1875994 08B09_rep_B_Ropinirole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/carA_P5B6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (carA_P5B6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201437782-1877926 09B02_rep_C_Glimepiridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201437782-1877926 09B02_rep_C_Glimepiridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080071/ccms_peak/Dataset 1/Positive1/._NZ Lichen_P_1_lichen_03_F 3_GB3_01_24912.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152202025-1576785 Batch2_NCIH520_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150308804-1864741 02B06_rep_B_Lynestrenolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150308804-1864741 02B06_rep_B_Lynestrenolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088138/raw/210916_tanaka12.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092247/other/Cold_Spring_Harbor_2023/32_Aye_MontaukWatermelon_Watermelon.mzML at line 689
Invalid character: Char 0x0 out of allowed range
, line 41100, column 1407 (32_Aye_MontaukWatermelon_Watermelon.mzML, line 41100)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101134998-1869319 07A01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101134998-1869319 07A01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O12_id_MSn_negative.mzML at line 21
index 346 is out of bounds for axis 0 with size 346
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007519_031618-0.01Thr6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113155767-1874420 11H01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113155767-1874420 11H01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_phospho_LFD42_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124646106-1876687 09A11_rep_A_Pinaverium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124646106-1876687 09A11_rep_A_Pinaverium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C1_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnI_P4B1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (phnI_P4B1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122437440-1879933 15B08_rep_C_Carvedilolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122437440-1879933 15B08_rep_C_Carvedilolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F10_id_MSn_positive.mzML at line 21
index 683 is out of bounds for axis 0 with size 683
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike0_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_C8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113350676-1922414 2_F8_IZH2_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113350676-1922414 2_F8_IZH2_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/torA_P3H11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (torA_P3H11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151926736-1576662 Batch7_NCIH2444_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_plasma_0h_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer2_plasma_0h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124415921-1876571 09E01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124415921-1876571 09E01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_115_3B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201401167-1877899 09G08_rep_C_Diphenylpyraline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201401167-1877899 09G08_rep_C_Diphenylpyraline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_81.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD6_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_B8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123422485-1876095 08D09_rep_B_Xylazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123422485-1876095 08D09_rep_B_Xylazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30178 - GI-19-082.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30243 - GI-17-615.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/49-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Stenotrophomonas_maltophilia_SmFLR01_02.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122955613-1867679 05C01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122955613-1867679 05C01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112010010-1872617 10C09_rep_C_Monensin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112010010-1872617 10C09_rep_C_Monensin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_G5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/668.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_E9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GF1_01_12147.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092313327-1878772 14A03_rep_A_Tridihexethyl_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092313327-1878772 14A03_rep_A_Tridihexethyl_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/LiLi-8d.mzXML at line 689
Premature end of data in tag peaks line 26864, line 26868, column 3575 (LiLi-8d.mzXML, line 26868)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223742040-1870276 01B09_rep_C_Idoxuridineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223742040-1870276 01B09_rep_C_Idoxuridineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoJ_#1_P4F2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (nuoJ_#1_P4F2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G11_id_MSn_negative.mzML at line 21
index 356 is out of bounds for axis 0 with size 356
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153347793-1577358 Batch5_HDQP1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152924062-1868369 06E06_rep_A_Cyclobenzaprine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152924062-1868369 06E06_rep_A_Cyclobenzaprine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150506166-1924437 1_G5_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150506166-1924437 1_G5_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/121-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M5_id_MSn_negative.mzML at line 21
index 304 is out of bounds for axis 0 with size 304
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_P5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_75.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_11P_A11_id_positive.mzML at line 21
index 249 is out of bounds for axis 0 with size 249
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100543380-1869038 07C03_rep_A_Biperiden_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100543380-1869038 07C03_rep_A_Biperiden_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/742.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_1_RESV_200uM_POS.mzXML at line 689
attributes construct error, line 38, column 83 (HepG2_1_RESV_200uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_53.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153957958-1577666 Batch6_DU4475_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150450367-1864819 02D11_rep_C_Triamcinoloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150450367-1864819 02D11_rep_C_Triamcinoloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/006_Ammonia_Day17_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152833374-1868329 06F01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152833374-1868329 06F01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180915_ES_H3K_batch2_repA_27.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B17_id_MSn_negative.mzML at line 21
index 270 is out of bounds for axis 0 with size 270
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101923691-1869695 07B01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101923691-1869695 07B01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075261.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_37_Blank.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_37_Blank.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089617/ccms_peak/HR_Control_Replicate3_20210102094444.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152212263-1868037 05G07_rep_D_GBR_12909_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152212263-1868037 05G07_rep_D_GBR_12909_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101059590-1869291 07B01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101059590-1869291 07B01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM5A010.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151819809-1576606 Batch7_UACC257_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122445850-1867430 04G08_rep_D_Oxytetracycline_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122445850-1867430 04G08_rep_D_Oxytetracycline_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6H05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metI_P6E7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (metI_P6E7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202405132-1878360 10G07_rep_A_Methimazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202405132-1878360 10G07_rep_A_Methimazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113726075-1874647 11A03_rep_C_Methazolamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113726075-1874647 11A03_rep_C_Methazolamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_E8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101836246-1869657 07E09_rep_D_Triflusala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101836246-1869657 07E09_rep_D_Triflusala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H10_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3H12_160531040543.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBsubR23h3b.mzML at line 689
Opening and ending tag mismatch: binary line 10474 and binaryDataArray, line 10477, column 31 (pBsubR23h3b.mzML, line 10477)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130033412-1863259 04D09_rep_A_Cinnarizineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130033412-1863259 04D09_rep_A_Cinnarizineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114054777-1874815 11F07_rep_D_Tolmetin_sodium_salt_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114054777-1874815 11F07_rep_D_Tolmetin_sodium_salt_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike2_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d1_283_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 35342, column 1 (SysVirol_IFT001_Cal04RG_d1_283_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 35342)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control112_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control112_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R37_5h1a.mzML at line 689
Specification mandates value for attribute accJ6BP8iegT, line 267818, column 47 (pBlichMO17R37_5h1a.mzML, line 267818)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/76.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2C07P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200810622-1881636 16D11_rep_A_Phenprobamateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200810622-1881636 16D11_rep_A_Phenprobamateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD6_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121824813-1867125 04C07_rep_C_Disopyramideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121824813-1867125 04C07_rep_C_Disopyramideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E24_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-blank2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-blank2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121642454-1867044 04G04_rep_B_Telenzepine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121642454-1867044 04G04_rep_B_Telenzepine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124323454-1862311 03D07_rep_A_Pentoxifyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124323454-1862311 03D07_rep_A_Pentoxifyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30093 - GI-16-336.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_A3_160424175138.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082720/ccms_peak/peak/ST000699/EX00459/Raw data/Amino acids/GCMS/2015-8-18.mzXML at line 689
error parsing attribute name, line 1815, column 15 (2015-8-18.mzXML, line 1815)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A10_id_MSn_negative_20240503181540.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152458167-1576925 Batch2_BXPC3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124100348-1876412 08E06_rep_D_Carbadoxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124100348-1876412 08E06_rep_D_Carbadoxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/33-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J18_id_MSn_positive_20240503090600.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A5_id_MSn_positive.mzML at line 21
index 649 is out of bounds for axis 0 with size 649
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM4AG004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydiB_P6G3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (ydiB_P6G3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092130581-1878691 14B01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092130581-1878691 14B01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA12.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093155554-1879177 14D08_rep_C_Formestaneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093155554-1879177 14D08_rep_C_Formestaneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/022_CRa_H9M5_M470_Blank_06_high_pos.mzXML at line 689
Premature end of data in tag peaks line 19666, line 19670, column 11765 (022_CRa_H9M5_M470_Blank_06_high_pos.mzXML, line 19670)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151258340-1924844 3_B7_SNF3_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151258340-1924844 3_B7_SNF3_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092346281-1878798 14H03_rep_A_Procarbazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092346281-1878798 14H03_rep_A_Procarbazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C17_id_MSn_negative.mzML at line 21
index 321 is out of bounds for axis 0 with size 321
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O20_id_MSn_negative.mzML at line 21
index 328 is out of bounds for axis 0 with size 328
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112732783-1922125 4_B9_GPR1_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112732783-1922125 4_B9_GPR1_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125236096-1862868 03A01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125236096-1862868 03A01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR13h2a.mzML at line 689
Opening and ending tag mismatch: binary line 87562 and spectrum, line 87596, column 20 (pBlateR13h2a.mzML, line 87596)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152320606-1868089 05E03_rep_D_Betamethasoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152320606-1868089 05E03_rep_D_Betamethasoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/954.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_59.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081011.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087069/raw/BRB Liquid Convert pos/BBR_R17500_N40_I10e4_E30_pos_06292020.mzML at line 689
Premature end of data in tag binary line 288389, line 288389, column 190518 (BBR_R17500_N40_I10e4_E30_pos_06292020.mzML, line 288389)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201218_LKM_no_wash_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_57.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/edd_#1_P3B1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (edd_#1_P3B1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172648504-1889906 Wa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125332011-1862913 03C08_rep_C_Catharanthineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125332011-1862913 03C08_rep_C_Catharanthineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094792/raw/raw_files/BriareumC.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152959513-1577178 Batch3_SCABER_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD1_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.liv_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152303924-1576834 Batch1_HCC1806_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysN_P5F6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (cysN_P5F6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153341493-1577353 Batch5_NCIH23_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121851950-1879671 15B02_rep_B_Acetylcysteineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121851950-1879671 15B02_rep_B_Acetylcysteineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_14_male_2022_1017_Michael_neg-0.0034.mzML at line 689
Premature end of data in tag binary line 20567, line 20567, column 2118582 (2_14_male_2022_1017_Michael_neg-0.0034.mzML, line 20567)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200928845-1877700 09H07_rep_B_Pramoxine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200928845-1877700 09H07_rep_B_Pramoxine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_G2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122720566-1867555 05A11_rep_A_Bisoprolol_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122720566-1867555 05A11_rep_A_Bisoprolol_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD5_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092000697-1878622 13D09_rep_D_Zuclopenthixol_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092000697-1878622 13D09_rep_D_Zuclopenthixol_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201411890-1877907 09A07_rep_C_Oxiconazole_Nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201411890-1877907 09A07_rep_C_Oxiconazole_Nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152323286-1868091 05E06_rep_D_Brinzolamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152323286-1868091 05E06_rep_D_Brinzolamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170207_061EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e7/69df6fe34bbf30a55a69ebf104fc24/input_file/SH8_20170207_061EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114514127-1875025 12D03_rep_A_Monobenzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114514127-1875025 12D03_rep_A_Monobenzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_63.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB5G01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample038.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123029224-1875907 08A06_rep_A_Atropine_sulfate_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123029224-1875907 08A06_rep_A_Atropine_sulfate_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122720865-1880060 15G08_rep_D_Docetaxela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122720865-1880060 15G08_rep_D_Docetaxela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152939527-1577161 Batch3_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/004_1018_1_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Methylobacterium_LYG001A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111751584-1921621 1_D3_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111751584-1921621 1_D3_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009644_IBD200_E18_B10.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/PED2_50EV_RA7_01_22532.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000089570/raw/fabiansfd/Parameters Acantho/Manzamine A HCl.mzML at line 689
Opening and ending tag mismatch: binary line 257539 and scanWindow, line 257541, column 30 (Manzamine A HCl.mzML, line 257541)
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HaCaT_3_RESV_20uM_NEG.mzXML at line 689
attributes construct error, line 38, column 82 (HaCaT_3_RESV_20uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_dilute_190201040107.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153819480-1868789 06H02_rep_C_Vatalanibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153819480-1868789 06H02_rep_C_Vatalanibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092304215-1878765 14H08_rep_A_Azaperoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092304215-1878765 14H08_rep_A_Azaperoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_89.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_A6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125957727-1877257 13C04_rep_A_Dimaprit_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125957727-1877257 13C04_rep_A_Dimaprit_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_258.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153754497-1868769 06F02_rep_C_Alizapride_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153754497-1868769 06F02_rep_C_Alizapride_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S2cells_celar_2_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2L003B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113616218-1922540 2_B5_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113616218-1922540 2_B5_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/288.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30247 - GI-18-423.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD3_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122100411-1867248 04B02_rep_C_Chlorothiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122100411-1867248 04B02_rep_C_Chlorothiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/274.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1555.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1555.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nanT_#2_P3H8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (nanT_#2_P3H8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125131889-1862816 03B03_rep_C_Etofyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125131889-1862816 03B03_rep_C_Etofyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165722639-2227475 PAT38.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD4_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121905603-1867157 04G11_rep_C_Mebeverine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121905603-1867157 04G11_rep_C_Mebeverine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007634_032118-0.01Thr2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_P_E3E3_C_IMS_13Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MSB13A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121651321-1867051 04E08_rep_B_Oxybutynin_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121651321-1867051 04E08_rep_B_Oxybutynin_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114156258-1922839 4_D10_STE2_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114156258-1922839 4_D10_STE2_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G1_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121956653-1867197 04H11_rep_C_Fluphenazine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121956653-1867197 04H11_rep_C_Fluphenazine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151901548-1576641 Batch5_HCC1187_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control233_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control233_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH70.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ5_7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101340778-1869420 07F08_rep_B_Piracetamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101340778-1869420 07F08_rep_B_Piracetamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130153494-1877343 13B10_rep_B_Ozagrel_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130153494-1877343 13B10_rep_B_Ozagrel_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201613912-1877995 09C04_rep_C_Zileutonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201613912-1877995 09C04_rep_C_Zileutonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR27_5h3a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 61592, column 3464 (pMIBSDR27_5h3a.mzML, line 61592)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151422265-1924916 4_E8_SNF3_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151422265-1924916 4_E8_SNF3_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_102.mzXML at line 689
Premature end of data in tag peaks line 20099, line 20103, column 3654 (20121114_102.mzXML, line 20103)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201827802-1878096 09G03_rep_D_Succinylsulfathiazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201827802-1878096 09G03_rep_D_Succinylsulfathiazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_53.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150813226-1924598 2_C7_RGT2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150813226-1924598 2_C7_RGT2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111955919-1872606 10G10_rep_C_Drofenine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111955919-1872606 10G10_rep_C_Drofenine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_17_CNR_30.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_17_CNR_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151245803-1924833 3_D10_SNF3_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151245803-1924833 3_D10_SNF3_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201115988-1881773 16B11_rep_B_Estramustinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201115988-1881773 16B11_rep_B_Estramustinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/asd_P4E8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (asd_P4E8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121804244-1867109 04D08_rep_C_Labetalol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121804244-1867109 04D08_rep_C_Labetalol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/ccms_peak/Raw_Spectrum_Files/ALZ_CBM_P_E3E4_AD_31Jan18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125814119-1863144 04B10_rep_A_Ethacrynic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125814119-1863144 04B10_rep_A_Ethacrynic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123511817-1876135 08E09_rep_B_Oxibendazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123511817-1876135 08E09_rep_B_Oxibendazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K7_id_negative.mzML at line 21
index 274 is out of bounds for axis 0 with size 274
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151900342-1576640 Batch5_HCC1187_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_E8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/CORN_AAD1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210314_LKM_control_beads_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD6_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124500209-1862388 03F02_rep_A_Piroxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124500209-1862388 03F02_rep_A_Piroxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_2_B_rep_3_B-B7_1_5649.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125154116-1862834 03C05_rep_C_Methocarbamola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125154116-1862834 03C05_rep_C_Methocarbamola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GF11_01_17093.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2G01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_07_RIN_25.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_07_RIN_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D17_id_negative.mzML at line 21
index 275 is out of bounds for axis 0 with size 275
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/487-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample199_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_QC_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202033639-1878193 09H08_rep_D_Finasterideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202033639-1878193 09H08_rep_D_Finasterideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/973.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_D1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202110422-1878222 09F03_rep_D_Citalopram_Hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202110422-1878222 09F03_rep_D_Citalopram_Hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124605497-1876655 09F03_rep_A_Citalopram_Hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124605497-1876655 09F03_rep_A_Citalopram_Hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B02Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_E8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222934330-1869906 01E11_rep_A_Lidocaine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222934330-1869906 01E11_rep_A_Lidocaine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122537576-1867472 05G06_rep_A_Mitoxantrone_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122537576-1867472 05G06_rep_A_Mitoxantrone_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C9_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_43_AC+_15.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/026_CRa_H9M5_M470_H03_K2_low_pos.mzXML at line 689
Premature end of data in tag msRun line 5, line 14675, column 1 (026_CRa_H9M5_M470_H03_K2_low_pos.mzXML, line 14675)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124305653-1876513 08E05_rep_D_Butenafine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124305653-1876513 08E05_rep_D_Butenafine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_QC_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/proP_#1_P3H6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (proP_#1_P3H6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_A_1.mzXML at line 689
Premature end of data in tag peaks line 2153, line 2157, column 7662 (L_A_1.mzXML, line 2157)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metN_P3H9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (metN_P3H9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/40-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnH_#2_P4B10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (phnH_#2_P4B10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JVE2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101719307-1869594 07A05_rep_C_Benperidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101719307-1869594 07A05_rep_C_Benperidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102039353-1869757 07B09_rep_D_Artemisinina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102039353-1869757 07B09_rep_D_Artemisinina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112520632-1922009 3_B5_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112520632-1922009 3_B5_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_54.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112940980-1874320 11C10_rep_A_Dimethadionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112940980-1874320 11C10_rep_A_Dimethadionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C4_id.mzML at line 21
index 521 is out of bounds for axis 0 with size 521
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample096_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_G6_id_positive.mzML at line 21
index 347 is out of bounds for axis 0 with size 347
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121859361-1867152 04B07_rep_C_Isotretinoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121859361-1867152 04B07_rep_C_Isotretinoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ7_4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007532_031618-1Thr3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GB5_01_11634.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P14_id_negative.mzML at line 21
index 255 is out of bounds for axis 0 with size 255
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114437238-1874996 12C11_rep_A_Nisoxetine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114437238-1874996 12C11_rep_A_Nisoxetine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111540474-1921508 1_A3_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111540474-1921508 1_A3_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00072584.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190352300-1889811 NNb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123849516-1876308 08C06_rep_C_Voriconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123849516-1876308 08C06_rep_C_Voriconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD2_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ2_3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_141.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151730712-1576566 Batch4_HPAC_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET28.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET28.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fabD_#3_P5H11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (fabD_#3_P5H11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_2_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/BUD1_50EV_RA3_01_22723.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_E1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNY243_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170127_056ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/19/a5ca8dd8bfdd215d2b2ecaafe27f6d/input_file/MMW5_20170127_056ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151139412-1576274 Batch5_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201625849-1882003 16B09_rep_C_Altrenogesta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201625849-1882003 16B09_rep_C_Altrenogesta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124618663-1862566 03F07_rep_B_Tiapride_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124618663-1862566 03F07_rep_B_Tiapride_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190112_ES_H3K_batch13_repA_197.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/galT_P5G8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (galT_P5G8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD2_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097681/peak/amino acids/030521-b1-RN-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/15_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw4_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132909571-1733891 blanka.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223138562-1869999 01A03_rep_B_Allantoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223138562-1869999 01A03_rep_B_Allantoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152436029-1576907 Batch2_VMCUB1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tyrA_P3C10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (tyrA_P3C10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_08P_C5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K15_id_MSn_positive.mzML at line 21
index 540 is out of bounds for axis 0 with size 540
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_CABIN_sample07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111801260-1921629 2_C4_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111801260-1921629 2_C4_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121311092-1879413 15F02_rep_A_Topotecanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121311092-1879413 15F02_rep_A_Topotecanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control106_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control106_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_95.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122752961-1880085 15E08_rep_D_Desloratadineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122752961-1880085 15E08_rep_D_Desloratadineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD3_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125153708-1876885 12E09_rep_C_Nilutamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125153708-1876885 12E09_rep_C_Nilutamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_B2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100808381-1869155 07D07_rep_A_Lovastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100808381-1869155 07D07_rep_A_Lovastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR131_5h1a.mzML at line 689
Opening and ending tag mismatch: binary line 92788 and scan, line 92796, column 20 (pBpumR131_5h1a.mzML, line 92796)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125229990-1862863 03E04_rep_C_Flufenamic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125229990-1862863 03E04_rep_C_Flufenamic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F10_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fabA_P3B6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (fabA_P3B6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180426_ES_H3K_batch6_repD_40.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD3_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD3_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A21_id.mzML at line 21
index 519 is out of bounds for axis 0 with size 519
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092647115-1878939 14G11_rep_B_Parbendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092647115-1878939 14G11_rep_B_Parbendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_0123.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114521051-1875030 12A01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114521051-1875030 12A01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_59.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_A3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/310.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD6_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122247461-1867334 04G11_rep_D_Mebeverine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122247461-1867334 04G11_rep_D_Mebeverine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152735147-1868284 06B01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152735147-1868284 06B01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J5_id_MSn_negative.mzML at line 21
index 340 is out of bounds for axis 0 with size 340
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD2_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094756/peak/02_TO_mLiver_Sup_C18_pos.mzML at line 689
Premature end of data in tag binary line 2677999, line 2677999, column 1555 (02_TO_mLiver_Sup_C18_pos.mzML, line 2677999)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009775_IBD200_E4_A2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_08_329_prot_60_IMS_17Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111825663-1872054 10E01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111825663-1872054 10E01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007733_032318-5CRP6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122522362-1879968 15G05_rep_C_Olmesartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122522362-1879968 15G05_rep_C_Olmesartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151427953-1924921 4_B2_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151427953-1924921 4_B2_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113232312-1874449 11E10_rep_B_Clinafloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113232312-1874449 11E10_rep_B_Clinafloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122920340-1880154 15F01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122920340-1880154 15F01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample063_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_C2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/codA_P3H3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (codA_P3H3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-qc_elow (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_dilute_190201034429.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ispH_P3B8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (ispH_P3B8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/QC_15_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_2_Blood_HO_control_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_2_Blood_HO_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_38.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_38.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Blank_pesticide_170404010815.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_C5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122145370-1879802 15C04_rep_C_Cefdinira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122145370-1879802 15C04_rep_C_Cefdinira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085122/peak/28.mzXML at line 689
Specification mandates value for attribute gfjWukljfkP1uSO0NR, line 33511, column 27 (28.mzXML, line 33511)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202146562-1878250 09H11_rep_D_Cefuroxime_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202146562-1878250 09H11_rep_D_Cefuroxime_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_P5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acuI_#2_P4A2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (acuI_#2_P4A2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153458784-1577416 Batch5_HCT116_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3G12_160531010409.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210505_LKM_on_ctrl_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165824154-2227531 Healthy4.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151853278-1576634 Batch7_M14_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097739/peak/C7_3 MSMS pos.mzML at line 640
'selectedIonList'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hD3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hD3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ascB_P4G12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (ascB_P4G12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092801738-1878996 14D01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092801738-1878996 14D01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample041.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_135a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_133.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150746192-1924575 2_E9_RGT2_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150746192-1924575 2_E9_RGT2_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_136b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210324_AD_71.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112611146-1874155 11D06_rep_A_Zolmitriptanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112611146-1874155 11D06_rep_A_Zolmitriptanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145717680-1863985 02D07_rep_A_Naltrexone hydrochloride dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145717680-1863985 02D07_rep_A_Naltrexone hydrochloride dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009472_IBD200_E8_A9.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB4G05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_115_2A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated8hA1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated8hA1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_71.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G22_id_negative.mzML at line 21
index 267 is out of bounds for axis 0 with size 267
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pitB_P3E3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (pitB_P3E3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152549074-1868202 05F02_rep_D_Ketotifen_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152549074-1868202 05F02_rep_D_Ketotifen_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/308.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/841.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K18_id_MSn_negative.mzML at line 21
index 341 is out of bounds for axis 0 with size 341
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H18_id_MSn_negative.mzML at line 21
index 355 is out of bounds for axis 0 with size 355
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tsx_P3D8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (tsx_P3D8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152951263-1577171 Batch3_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093107111-1879138 14B08_rep_C_Oxprenolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093107111-1879138 14B08_rep_C_Oxprenolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aldA_P4C2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (aldA_P4C2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_C7_id_MSn_positive.mzML at line 21
index 416 is out of bounds for axis 0 with size 416
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control91_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control91_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/648.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ1_1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2F08P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_87.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_87.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Spombe_cell_sample2_POS.mzXML at line 689
attributes construct error, line 38, column 79 (Spombe_cell_sample2_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152253829-1576826 Batch2_BT20_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_phospho_LFD24_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/412.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130131520-1877326 13G08_rep_B_Tocainide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130131520-1877326 13G08_rep_B_Tocainide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082692/ccms_peak/ST000665/EX00348-lipidomics/Raw data/POS/Authentic.mzXML at line 689
Opening and ending tag mismatch: peaks line 21601 and msRun, line 52684, column 11 (Authentic.mzXML, line 52684)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Column2_test_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/16FEB2021 Column3_test_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124312955-1876519 08C02_rep_D_Reboxetine_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124312955-1876519 08C02_rep_D_Reboxetine_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096195/ccms_peak/191109_AR_10043_enriched_UHR_Neg.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD5_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113340620-1874504 11C01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113340620-1874504 11C01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/169-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_C5_id_MSn_positive_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_NC101_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/422.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30135 - GI-16-433.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_012ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/65/3cf6d8827025e438ec931484060a54/input_file/QC_20170209_012ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/QC_2_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125741806-1863117 04C04_rep_A_Doxepin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125741806-1863117 04C04_rep_A_Doxepin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2G09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-087_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wzyE_P4F1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (wzyE_P4F1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/604.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151440965-1576425 Batch6_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_236.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M24_id_negative.mzML at line 21
index 287 is out of bounds for axis 0 with size 287
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case33_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case33_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gntK_#2_P3C2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (gntK_#2_P3C2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124227380-1876482 08C11_rep_D_Etretinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124227380-1876482 08C11_rep_D_Etretinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_Plasma1_POS.mzXML at line 689
attributes construct error, line 38, column 75 (Person4_Plasma1_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_63_AC+_47.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121459092-1866964 04F02_rep_B_Dantrolene_sodium_salt_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121459092-1866964 04F02_rep_B_Dantrolene_sodium_salt_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/185-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112850866-1922195 4_A2_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112850866-1922195 4_A2_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person07_RBC_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Person07_RBC_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/004_Soil_WaterIntra_2_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_97.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/377.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_QC_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_QC_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170127_049ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/30/f53b04d355004a6a21341b0cf22430/input_file/MMW4_20170127_049ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_81.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_81.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uxaB_#1_P5B12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (uxaB_#1_P5B12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145701569-1863972 02F06_rep_A_Methotrexateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145701569-1863972 02F06_rep_A_Methotrexateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_blank_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223843008-2227673 PAT43.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_C5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_06_CNR_25.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_06_CNR_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/blank_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_sample02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control31_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control31_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/755.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123230987-1876005 08H06_rep_B_Aceclidine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123230987-1876005 08H06_rep_B_Aceclidine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113832180-1874700 11A08_rep_C_Chloropyramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113832180-1874700 11A08_rep_C_Chloropyramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113200564-1922318 1_C2_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113200564-1922318 1_C2_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/833.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD2_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122307215-1867350 04F08_rep_D_Benzydamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122307215-1867350 04F08_rep_D_Benzydamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/convert mzML/210924_06.mzML at line 689
Specification mandates value for attribute couAAAAAAAAAAAAAAAAAAAAAPA, line 749778, column 57 (210924_06.mzML, line 749778)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pntA_P3A12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (pntA_P3A12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/735.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G10P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122602660-1879999 15B08_rep_D_Carvedilolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122602660-1879999 15B08_rep_D_Carvedilolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_44_CNR_15.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_44_CNR_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-4-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093526/peak/mzML/DIA/Sa02_Water_POS_DIA_4mz.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudK_P3C10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (nudK_P3C10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112537376-1874128 10H07_rep_D_Lithocholic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112537376-1874128 10H07_rep_D_Lithocholic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_phospho_HFD7_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNS615_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152337966-1576861 Batch2_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152755573-1868300 06A02_rep_A_Testosterone_propionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152755573-1868300 06A02_rep_A_Testosterone_propionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151618266-1576505 Batch7_7860_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpE_P5E1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (atpE_P5E1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_172.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folD_P3F6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (folD_P3F6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD4_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121911983-1867162 04G08_rep_C_Oxytetracycline_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121911983-1867162 04G08_rep_C_Oxytetracycline_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N8_id.mzML at line 21
index 538 is out of bounds for axis 0 with size 538
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GH1_01_16994.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_C5_id_MSn_positive.mzML at line 21
index 691 is out of bounds for axis 0 with size 691
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_C3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I8_id_MSn_positive.mzML at line 21
index 567 is out of bounds for axis 0 with size 567
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180915_ES_H3K_batch2_repD_23.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ubiG_#1_P5F10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (ubiG_#1_P5F10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O22_id_negative.mzML at line 21
index 273 is out of bounds for axis 0 with size 273
Error processing file: /data/datasets/server/MassIVE/MSV000087427/peak/03-17-2021-RA-peaklist-reconvert/720_Group15_142dpi_RA_220_G_E12_P124.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151431456-1576417 Batch7_HOP62_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_A7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person01_RBC_youth_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Person01_RBC_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/623.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170127_064ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b4/142f4cbe209052a5b8d99a95fb8bbe/input_file/SH10_20170127_064ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120957699-1879269 14B10_rep_D_Propoxycaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120957699-1879269 14B10_rep_D_Propoxycaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD1_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/422.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N17_id_MSn_positive.mzML at line 21
index 575 is out of bounds for axis 0 with size 575
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007489_031618-Unst2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113717414-1874640 11G04_rep_C_Ciclesonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113717414-1874640 11G04_rep_C_Ciclesonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ispE_P3E1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ispE_P3E1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111854493-1921675 2_E5_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111854493-1921675 2_E5_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K9_id_MSn_negative.mzML at line 21
index 352 is out of bounds for axis 0 with size 352
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR331_5h3a.mzML at line 689
Specification mandates value for attribute acce5EkRLjfJETzTSVEeU0mRLUVJ0TcTidEu5AnREZRKETElihEaZ4oRAMPKUT8GCtE20osRCkCLUQmSi5Eio0uRPnPLkRKFS9ENNMvRHbXL0QoFzBEwlMwRBxZMUQ3FzJEG4gyRPVVM0TtzjNEjNozRMQMNETgTzREbSQ1RO1ZNUQrkTVEbZo1RKDSNURbIzZE6vA2RDQbN0QU2DpEsXo8RCWlPkS7jz9EahhBRLxUQUTBzkFEo9RBRHgWQkQw1UJECtVDRBvkQ0R, line 19887, column 305 (pBpumR331_5h3a.mzML, line 19887)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5L003A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115041954-1875283 12C04_rep_B_Diloxanide_furoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115041954-1875283 12C04_rep_B_Diloxanide_furoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122452122-1867435 04E01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122452122-1867435 04E01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GB11_01_16927.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081769.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080949/ccms_peak/peaks/3samples_sampl1_POS.mzXML at line 689
attributes construct error, line 41, column 77 (3samples_sampl1_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145716531-1863984 02H11_rep_A_Gentamicine sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145716531-1863984 02H11_rep_A_Gentamicine sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007518_031618-0.01Thr6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M11_id_MSn_negative.mzML at line 21
index 391 is out of bounds for axis 0 with size 391
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152027190-1576710 Batch1_UMUC3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dmsA_P3D2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (dmsA_P3D2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125527397-1863007 03C07_rep_D_Cloxacillin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125527397-1863007 03C07_rep_D_Cloxacillin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_55.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_91.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/821.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F11_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125746662-1863121 04C05_rep_A_Dyclonine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125746662-1863121 04C05_rep_A_Dyclonine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Pos/P6.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100607417-1869057 07C07_rep_A_Sisomicin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100607417-1869057 07C07_rep_A_Sisomicin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample137.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample33n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_20_Liver_EtOH_control_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_20_Liver_EtOH_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092146147-1878703 14D10_rep_A_Methicillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092146147-1878703 14D10_rep_A_Methicillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122153457-1867291 04F01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122153457-1867291 04F01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114413018-1922961 4_D2_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114413018-1922961 4_D2_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_E9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hD1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hD1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8B07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/34-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190312980-1889781 Wb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111501557-1921089 1_D8_GAP1_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111501557-1921089 1_D8_GAP1_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/616.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_61.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/855.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151225617-1576312 Batch5_NCIH2135_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_60_RIN_49.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_60_RIN_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/911.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165809850-2227518 PAT33.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB1B09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112148999-1921824 3_E9_GPR1_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112148999-1921824 3_E9_GPR1_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_131_1C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202126878-1882236 16G08_rep_D_Risedronic_acid_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202126878-1882236 16G08_rep_D_Risedronic_acid_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gmk_P4F10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (gmk_P4F10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153117691-1868454 06F09_rep_B_Melatonina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153117691-1868454 06F09_rep_B_Melatonina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_dilute_190201000831.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_5_Dorsal_skin_HO_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_5_Dorsal_skin_HO_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112257133-1873615 10D06_rep_D_Piperacillin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112257133-1873615 10D06_rep_D_Piperacillin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_079a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100933309-1869222 07E10_rep_A_Mesoridazine_besylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100933309-1869222 07E10_rep_A_Mesoridazine_besylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person23_RBC_elder_POS.mzXML at line 689
attributes construct error, line 41, column 81 (Person23_RBC_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/297.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210330_AD_8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122549467-1879989 15D07_rep_D_Enoxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122549467-1879989 15D07_rep_D_Enoxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lldD_P3G5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (lldD_P3G5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130453472-1877483 13E03_rep_B_Alfaxalonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130453472-1877483 13E03_rep_B_Alfaxalonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-097_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092309401-1878769 14C03_rep_A_Ioxaglic_acid_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092309401-1878769 14C03_rep_A_Ioxaglic_acid_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-022.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-022.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_48.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_08P_A5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_phospho_LFD8_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/satP_#3_P4C7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (satP_#3_P4C7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123303314-1867825 05D06_rep_B_Hycanthoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123303314-1867825 05D06_rep_B_Hycanthoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GF3_01_17085.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223632918-1870223 01B10_rep_C_Captoprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223632918-1870223 01B10_rep_C_Captoprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092153/peak/Sample0004.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123218138-1875995 08B09_rep_B_Ropinirole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123218138-1875995 08B09_rep_B_Ropinirole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223937512-2227720 pooled.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_0123_190124002052.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F23_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113023770-1874351 11D07_rep_B_Indoprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113023770-1874351 11D07_rep_B_Indoprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112306992-1873623 10F10_rep_D_Zomepirac_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112306992-1873623 10F10_rep_D_Zomepirac_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_048EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/07/921be7ba48e561e140b01ba83d6702/input_file/QC_20170207_048EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ1_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123916759-1876330 08B09_rep_C_Ropinirole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123916759-1876330 08B09_rep_C_Ropinirole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaY_#1_P5E6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (waaY_#1_P5E6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_08_007_prot_59_IMS_8Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078891/ccms_peak/massive_cyanos/EH_2014_05_19_WT+N_colony.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000084475/peak/mzXML files/controls/Media blanks/FCM Plate 1_time_0/HM_222_GC6_01_47022.mzXML at line 117
operands could not be broadcast together with shapes (5337,) (7443,) 
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B14_id_MSn_positive.mzML at line 21
index 503 is out of bounds for axis 0 with size 503
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007643_032118-0.01Thr6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/67-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/queC_P3B7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (queC_P3B7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/R48_III_ESI-.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123118914-1875947 08C03_rep_A_Camylofine_chlorhydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123118914-1875947 08C03_rep_A_Camylofine_chlorhydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125835253-1877193 13H11_rep_A_Pyrvinium_pamoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125835253-1877193 13H11_rep_A_Pyrvinium_pamoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GH3_01_11749.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_023_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/544-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153403565-1577371 Batch4_NCIH1651_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151457557-1576439 Batch6_NCIH1838_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210314_LKM_rapid_beads_60min_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200842960-1881660 16A09_rep_A_Enrofloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200842960-1881660 16A09_rep_A_Enrofloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J13_id_MSn_negative.mzML at line 21
index 357 is out of bounds for axis 0 with size 357
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 2-30189 - GI-16-672.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S23.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S23.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101905077-1869680 07G09_rep_D_Chloroquine_diphosphateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101905077-1869680 07G09_rep_D_Chloroquine_diphosphateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151707965-1576547 Batch4_HPAC_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpBud1_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yidA_P3F9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (yidA_P3F9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/clcA_#1_P4B9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (clcA_#1_P4B9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H8_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30236 - GI-17-500.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_C12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C10_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD4_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202028478-1882191 16F05_rep_D_Histamine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202028478-1882191 16F05_rep_D_Histamine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBmegR231_5h1b.mzML at line 689
Opening and ending tag mismatch: binary line 16358 and binaryDataArray, line 16362, column 31 (pBmegR231_5h1b.mzML, line 16362)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample014_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130046223-1877291 13F05_rep_A_Sertralinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130046223-1877291 13F05_rep_A_Sertralinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125116940-1862804 03B10_rep_C_Phenformin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125116940-1862804 03B10_rep_C_Phenformin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/383.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165714125-2227467 PAT36.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124701433-1862600 03D05_rep_B_Nimesulidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124701433-1862600 03D05_rep_B_Nimesulidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_E8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C6_id_MSn_negative.mzML at line 21
index 299 is out of bounds for axis 0 with size 299
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ulaB_P6B6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024911 (ulaB_P6B6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1K004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNS606_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153147446-1577261 Batch4_NCIH2286_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223838409-2227669 PAT46.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100312207-1868918 06B05_rep_D_Amlodipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100312207-1868918 06B05_rep_D_Amlodipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc4 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121103525-1879318 14E01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121103525-1879318 14E01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/blank_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc1_PBST24_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180626_ES_H3K_bacth8_repB_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E23_id.mzML at line 21
index 589 is out of bounds for axis 0 with size 589
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30118 - GI-14-881.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A18_id_negative.mzML at line 21
index 237 is out of bounds for axis 0 with size 237
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F6_id_MSn_positive.mzML at line 21
index 420 is out of bounds for axis 0 with size 420
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C10_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165830613-2227537 PAT41.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113154490-1874419 11E01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113154490-1874419 11E01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151316093-1576354 Batch7_CHAGOK1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_A4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/001_Soil_WaterExtra_2_Col2_JX_12172015_151217205508.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151612260-1576500 Batch7_NCIH441_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_173.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200950379-1877716 09B04_rep_B_Mepenzolate_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200950379-1877716 09B04_rep_B_Mepenzolate_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151223574-1924814 3_A5_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151223574-1924814 3_A5_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_06_CNR_53.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_06_CNR_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-blank (5).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009501_IBD200_E9_A11.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121841446-1879663 15D07_rep_B_Enoxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121841446-1879663 15D07_rep_B_Enoxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151336627-1924877 3_E5_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151336627-1924877 3_E5_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123135233-1867754 05E01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123135233-1867754 05E01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G04Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111749246-1921619 1_B9_GAP1_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111749246-1921619 1_B9_GAP1_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR131_5h3a.mzML at line 689
Specification mandates value for attribute cvIngFAyJ6BP8iegT, line 107627, column 41 (pBlateR131_5h3a.mzML, line 107627)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/680.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/828.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N20_id_MSn_negative.mzML at line 21
index 375 is out of bounds for axis 0 with size 375
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2F08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152505341-1576931 Batch1_CALU6_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-19d-3.mzXML at line 689
Premature end of data in tag peaks line 1784, line 1788, column 3578 (YnYn-19d-3.mzXML, line 1788)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153834975-1577596 Batch7_MIAPACA2_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124558809-1876650 09C03_rep_A_D,L-Penicillaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124558809-1876650 09C03_rep_A_D,L-Penicillaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101535423-1869509 07D08_rep_C_Nystatinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101535423-1869509 07D08_rep_C_Nystatinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/artJ_P4G12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (artJ_P4G12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084796/ccms_peak/Numune-1.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000084796/ccms_peak/Numune-1.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151532691-1576467 Batch7_CORL23_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202520480-1878419 10C04_rep_A_Medrysoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202520480-1878419 10C04_rep_A_Medrysoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_A4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_333.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafTreatedA1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafTreatedA1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/889.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/002_Urea_Day9_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088286/ccms_peak/210916_tanaka13.mzML at line 689
error parsing attribute name, line 751247, column 1270 (210916_tanaka13.mzML, line 751247)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123212688-1867784 05C05_rep_B_Clorgyline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123212688-1867784 05C05_rep_B_Clorgyline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GA4_01_12062.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122121441-1867265 04A08_rep_D_Albendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122121441-1867265 04A08_rep_D_Albendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_49.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pepB_P4A4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (pepB_P4A4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_17121408_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000088483/raw/P1AcM2C.mzXML at line 689
Specification mandates value for attribute retentiPL198ZdPrC7Sf, line 37717, column 31 (P1AcM2C.mzXML, line 37717)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180829_ES_H3K_batch11_repB_158.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/343.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_71.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223717107-2227598 PAT51.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET72.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET72.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151442148-1576426 Batch7_CORL88_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-096_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H14_id_MSn_positive.mzML at line 21
index 594 is out of bounds for axis 0 with size 594
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_E10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_51_CNR_25.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_51_CNR_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092341198-1878794 14H04_rep_A_Viomycin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092341198-1878794 14H04_rep_A_Viomycin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113404336-1922426 2_G1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113404336-1922426 2_G1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O15_id_MSn_negative.mzML at line 21
index 308 is out of bounds for axis 0 with size 308
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_89.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_115_2A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET124.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET124.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rutB_P5D9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (rutB_P5D9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/blank_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124418488-1876573 09H03_rep_A_Benzocaineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124418488-1876573 09H03_rep_A_Benzocaineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2F06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narJ_P4E12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (narJ_P4E12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125728564-1863106 03G09_rep_D_Tropicamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125728564-1863106 03G09_rep_D_Tropicamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GB9_01_17156.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD3_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201220_LKM_10to1_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095296/ccms_peak/positive_T0d/D046A.mzML at line 689
Premature end of data in tag spectrumList line 70, line 118799, column 1 (D046A.mzML, line 118799)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH37.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112802071-1922151 4_D9_GPR1_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112802071-1922151 4_D9_GPR1_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152023929-1867951 05B09_rep_C_N6-methyladenosineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152023929-1867951 05B09_rep_C_N6-methyladenosineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123656261-1876218 08G11_rep_C_Dimethisoquin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123656261-1876218 08G11_rep_C_Dimethisoquin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121834592-1879658 15C01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121834592-1879658 15C01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysP_#4_P4H11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (cysP_#4_P4H11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_G9_id_positive.mzML at line 21
index 307 is out of bounds for axis 0 with size 307
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152511399-1576936 Batch1_CALU1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_19090114_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081014.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090325/raw/MALDI-IMS EUTERPE OLERACEA SEED/20191129_felipebrum_acai_01.ibd at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125717001-1863096 03A07_rep_D_Mafenide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125717001-1863096 03A07_rep_D_Mafenide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121736318-1867087 04H08_rep_C_Guanethidine_sulfate_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121736318-1867087 04H08_rep_C_Guanethidine_sulfate_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_A2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170207_044EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/0b/d90f0212700dcbf9372fa4f17038fc/input_file/SH7_20170207_044EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145757152-1864017 02F05_rep_A_Diltiazem hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145757152-1864017 02F05_rep_A_Diltiazem hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/667.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121522909-1879511 15E02_rep_A_Clofibrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121522909-1879511 15E02_rep_A_Clofibrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150401376-1864781 02B04_rep_C_Azacyclonolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150401376-1864781 02B04_rep_C_Azacyclonolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_male_2022_1017_Michael_neg-0014.mzML at line 689
Premature end of data in tag binary line 22897, line 22897, column 552421 (pooled_male_2022_1017_Michael_neg-0014.mzML, line 22897)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150906896-1865018 02F08_rep_D_Clindamycin hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150906896-1865018 02F08_rep_D_Clindamycin hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD3_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1G07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD4_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201752115-1878069 09C09_rep_D_Acitretinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201752115-1878069 09C09_rep_D_Acitretinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J15_id_MSn_negative.mzML at line 21
index 299 is out of bounds for axis 0 with size 299
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124032275-1876390 08F08_rep_D_Quipazine_dimaleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124032275-1876390 08F08_rep_D_Quipazine_dimaleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/005_Urea_Day11_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_06_dorsal_skin_RESV_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_06_dorsal_skin_RESV_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control245_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control245_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100702678-1869102 07C09_rep_A_Acenocoumarolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100702678-1869102 07C09_rep_A_Acenocoumarolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150115894-1864174 02A10_rep_B_Busulfanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150115894-1864174 02A10_rep_B_Busulfanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151709151-1576548 Batch4_DMS53_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_A8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201429766-1877920 09H09_rep_C_Fluorometholonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201429766-1877920 09H09_rep_C_Fluorometholonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153714189-1868737 06C04_rep_C_Carisoprodolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153714189-1868737 06C04_rep_C_Carisoprodolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pyrB_P4F11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (pyrB_P4F11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172652578-1889909 stdb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151906573-1576645 Batch7_NCIH1993_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113943970-1874758 11H07_rep_D_Bicalutamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113943970-1874758 11H07_rep_D_Bicalutamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ligA_P5D12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (ligA_P5D12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/GNPS-Nudibranch/converted coba2/200609_sample_59.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8A03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_175.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8C03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123222517-1867792 05H07_rep_B_Etoposidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123222517-1867792 05H07_rep_B_Etoposidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_19071524_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_2_40x_2022_1006_Michael_pos-0.0020.mzML at line 689
Premature end of data in tag binary line 6727, line 6727, column 2032122 (1_2_40x_2022_1006_Michael_pos-0.0020.mzML, line 6727)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Baicalein_noxyl_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1216.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1216.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202525220-1878423 10B02_rep_A_Sulfaquinoxaline_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202525220-1878423 10B02_rep_A_Sulfaquinoxaline_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201906407-1882127 16B05_rep_D_Tegaserod_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201906407-1882127 16B05_rep_D_Tegaserod_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113012697-1922228 1_H10_IZH2_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113012697-1922228 1_H10_IZH2_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122406837-1879910 15H09_rep_C_Sildenafila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122406837-1879910 15H09_rep_C_Sildenafila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153355105-1868577 06B07_rep_B_Bacampicillin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153355105-1868577 06B07_rep_B_Bacampicillin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202001813-1878168 09H07_rep_D_Pramoxine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202001813-1878168 09H07_rep_D_Pramoxine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P16_id_MSn_negative.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152641748-1577011 Batch2_NCIH838_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152312915-1576841 Batch2_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009677_IBD200_E21_B4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114128197-1874842 11D11_rep_D_Ethopropazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114128197-1874842 11D11_rep_D_Ethopropazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GB12_01_12092.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ygiN_P3D11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (ygiN_P3D11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D13_id_MSn_negative.mzML at line 21
index 307 is out of bounds for axis 0 with size 307
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121243376-1879393 14D01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121243376-1879393 14D01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/592.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122941944-1880171 15E10_rep_D_Tripelennamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122941944-1880171 15E10_rep_D_Tripelennamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112627561-1874168 11F09_rep_A_Doxazosin_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112627561-1874168 11F09_rep_A_Doxazosin_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_19032112_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GF12_01_17094.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093053141-1879127 14D09_rep_C_Benzylpenicillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093053141-1879127 14D09_rep_C_Benzylpenicillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_SERUM_V7_SSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/1.3_DMSO.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD1_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151038449-1865089 02C11_rep_D_Oxandroloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151038449-1865089 02C11_rep_D_Oxandroloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113228259-1922342 1_D7_IZH2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113228259-1922342 1_D7_IZH2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121709198-1879593 15G10_rep_A_Imiquimodb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121709198-1879593 15G10_rep_A_Imiquimodb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/20221212_carryover_test_noISTD_PLASMA_sample06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113813827-1874685 11G07_rep_C_Azacytidine-5b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113813827-1874685 11G07_rep_C_Azacytidine-5b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125529707-1877050 12B10_rep_D_Adrenosteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125529707-1877050 12B10_rep_D_Adrenosteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/220.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112840227-1874273 11C03_rep_A_Clidinium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112840227-1874273 11C03_rep_A_Clidinium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112506838-1921997 3_A5_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112506838-1921997 3_A5_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121007138-1879276 14B08_rep_D_Oxprenolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121007138-1879276 14B08_rep_D_Oxprenolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113451661-1922467 2_F10_IZH2_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113451661-1922467 2_F10_IZH2_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GC11_01_11860.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std c 010a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092744/ccms_peak/hem25D_CoQ6_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152233716-1576810 Batch1_NCIH1993_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211005_LKM_beads_mb_HPL_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L7_id_MSn_positive.mzML at line 21
index 661 is out of bounds for axis 0 with size 661
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1130.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1130.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153352713-1577362 Batch4_NCIH1869_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA13.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GF4_01_11703.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113053715-1922260 1_E7_IZH2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113053715-1922260 1_E7_IZH2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C2_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152615072-1868222 06E04_rep_A_Gabazine_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152615072-1868222 06E04_rep_A_Gabazine_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_C10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101406051-1869440 07B06_rep_C_Terconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101406051-1869440 07B06_rep_C_Terconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D21_id_MSn_negative.mzML at line 21
index 313 is out of bounds for axis 0 with size 313
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092412545-1878818 14C09_rep_A_Thiethylperazine_dimalate_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092412545-1878818 14C09_rep_A_Thiethylperazine_dimalate_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101204879-1869343 07E08_rep_B_Tenoxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101204879-1869343 07E08_rep_B_Tenoxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132940553-1733916 1pool Wound5D 1 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088138/raw/210916_tanaka04.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O3_id.mzML at line 21
index 523 is out of bounds for axis 0 with size 523
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151322984-1924865 3_G7_SNF3_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151322984-1924865 3_G7_SNF3_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125655341-1863078 03C06_rep_D_Aztreonama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125655341-1863078 03C06_rep_D_Aztreonama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person04_plasma_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 91 (Person04_plasma_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114157370-1922840 4_G7_STE2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114157370-1922840 4_G7_STE2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150721798-1864936 02A06_rep_C_Baclofen (R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150721798-1864936 02A06_rep_C_Baclofen (R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G11P.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_18072701_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_84.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180821_ES_H3K_batch10_repA_136.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_H4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_H4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113714306-1922590 3_C8_STE2_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113714306-1922590 3_C8_STE2_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153508652-1577424 Batch4_NCIH1563_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124013228-1876375 08B10_rep_D_Lacidipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124013228-1876375 08B10_rep_D_Lacidipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009591_IBD200_E15_A7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/403.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111443208-1921073 1_D9_GAP1_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111443208-1921073 1_D9_GAP1_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115019783-1875265 12G03_rep_B_Bretylium_tosylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115019783-1875265 12G03_rep_B_Bretylium_tosylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/BAT_raw files/Lumos_ISAS_BAT_UNLABELED_1.mzML at line 689
Premature end of data in tag spectrumList line 92, line 780626, column 1 (Lumos_ISAS_BAT_UNLABELED_1.mzML, line 780626)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/flc_P4F2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (flc_P4F2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223929249-1870359 01H01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223929249-1870359 01H01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B05P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112359444-1874050 10D05_rep_D_Fenoprofen_calcium_salt_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112359444-1874050 10D05_rep_D_Fenoprofen_calcium_salt_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/BUD1_MS_RA3_01_22718.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_CABIN_sample02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152039919-1576720 Batch1_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123920418-1876333 08B01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123920418-1876333 08B01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GD2_01_17053.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike6_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine59.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine59.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_012EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/42/8ec5c51447657b50f49bf82010861d/input_file/QC_20170207_012EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_D11_id_MSn_negative.mzML at line 21
index 318 is out of bounds for axis 0 with size 318
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_57.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190327713-1889792 Na.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121019233-1879285 14A08_rep_D_Piretanideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121019233-1879285 14A08_rep_D_Piretanideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/BUD2_MS_RA5_01_22583.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092655090-1878945 14E03_rep_B_(-)-Eseroline_fumarate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092655090-1878945 14E03_rep_B_(-)-Eseroline_fumarate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d3_276_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 41555, column 1 (SysVirol_IFT001_Cal04RG_d3_276_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 41555)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153706733-1577522 Batch5_HCT15_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/001_Nitrate_Day9_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/COR1_20EV_RA7_01_22682.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150309005-1924339 1_F4_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150309005-1924339 1_F4_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092422848-1878826 14E07_rep_A_D-cycloserinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092422848-1878826 14E07_rep_A_D-cycloserinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5G06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_10_Liver_Ma_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 87 (Mouse_10_Liver_Ma_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122241124-1867329 04C11_rep_D_Fendiline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122241124-1867329 04C11_rep_D_Fendiline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124151280-1862238 03C01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124151280-1862238 03C01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaH_#1_P6G6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (paaH_#1_P6G6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GG10_01_16989.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170125_062EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/fe/b1e1ee1290b28508aa2e76cf33e1c4/input_file/SH10_20170125_062EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170127_034ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/fb/ab8a648f8b723f9719d77405d396ed/input_file/SH10_20170127_034ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD1_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152437351-1868147 05H01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152437351-1868147 05H01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223246719-1870050 01H04_rep_B_Sulindacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223246719-1870050 01H04_rep_B_Sulindacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_A1_id_positive.mzML at line 21
index 407 is out of bounds for axis 0 with size 407
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_A10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/msrA_P3G4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (msrA_P3G4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S62.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S62.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087772/ccms_peak/190516_LP_JH_BlankM3_pos.mzML at line 689
Specification mandates value for attribute KDSxL0weDcgaY3mjLOPV0WL2aD6eF9n, line 268984, column 85 (190516_LP_JH_BlankM3_pos.mzML, line 268984)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009437_IBD200_E6_B2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case107_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case107_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200649805-1881577 16A07_rep_A_Amlexanoxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200649805-1881577 16A07_rep_A_Amlexanoxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111522072-1871526 10G06_rep_B_Dicumarolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111522072-1871526 10G06_rep_B_Dicumarolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_E8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-097_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122459460-1867441 04A11_rep_D_Alprenolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122459460-1867441 04A11_rep_D_Alprenolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fabZ_#1_P4F8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (fabZ_#1_P4F8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/002_1010_1_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125202761-1876892 12H03_rep_C_Toremifeneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125202761-1876892 12H03_rep_C_Toremifeneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113951692-1874764 11D02_rep_D_Butacainea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113951692-1874764 11D02_rep_D_Butacainea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170125_058EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/da/2d35c4651dee58ebeb64aae2ad178b/input_file/MMW3_20170125_058EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/961.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/blank_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_122b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130126266-1877322 13H04_rep_B_Nomegestrol_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130126266-1877322 13H04_rep_B_Nomegestrol_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170209_056ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/1e/889465b5f8cf4d3736f9b6962771ef/input_file/SH10_20170209_056ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate13/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152543854-1868198 05C06_rep_D_Clenbuterol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152543854-1868198 05C06_rep_D_Clenbuterol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121837313-1867135 04F02_rep_C_Dantrolene_sodium_salt_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121837313-1867135 04F02_rep_C_Dantrolene_sodium_salt_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_67_Blank.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_67_Blank.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112824868-1874261 11D10_rep_A_Ganciclovirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112824868-1874261 11D10_rep_A_Ganciclovirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201808446-1882081 16G03_rep_C_Loteprednol_etabonatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201808446-1882081 16G03_rep_C_Loteprednol_etabonatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009559_IBD200_E13_A3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153201681-1868488 06H07_rep_B_Primaquine_diphosphatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153201681-1868488 06H07_rep_B_Primaquine_diphosphatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150342723-1924367 1_C10_RGT2_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150342723-1924367 1_C10_RGT2_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150206827-1864694 02A01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150206827-1864694 02A01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mraY_P5B7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (mraY_P5B7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B04P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_Extracellular/mzML/Ex_Baicalein_3_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_MICU_107_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/441.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083595/raw/SS5.mzML at line 689
Premature end of data in tag binary line 360112, line 360112, column 4306 (SS5.mzML, line 360112)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112632660-1874172 11D05_rep_A_Novobiocin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112632660-1874172 11D05_rep_A_Novobiocin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125919898-1863199 04G09_rep_A_Pimozideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125919898-1863199 04G09_rep_A_Pimozideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nirC_P3C1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (nirC_P3C1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/289.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S133.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S133.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD2_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_B6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GC7_01_11955.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HaCaT_3_RESV_0uM_POS.mzXML at line 689
attributes construct error, line 38, column 81 (HaCaT_3_RESV_0uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009671_IBD200_E17_B3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124110498-1876420 08B03_rep_D_Mometasone_furoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124110498-1876420 08B03_rep_D_Mometasone_furoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R231_5h3a.mzML at line 689
Extra content at the end of the document, line 289836, column 1 (pBlichMO17R231_5h3a.mzML, line 289836)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person10_plasma_elder_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person10_plasma_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151256772-1576338 Batch5_SBC5_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100816193-1869161 07D06_rep_A_Trimethadionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100816193-1869161 07D06_rep_A_Trimethadionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121438308-1879479 15D07_rep_A_Enoxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121438308-1879479 15D07_rep_A_Enoxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145540748-1863907 02G04_rep_A_Chlorhexidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145540748-1863907 02G04_rep_A_Chlorhexidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007634_032118-0.01Thr2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G06P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112213175-1921845 3_H11_GPR1_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112213175-1921845 3_H11_GPR1_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I9_id.mzML at line 21
index 548 is out of bounds for axis 0 with size 548
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ2_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151217825-1924809 3_A7_SNF3_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151217825-1924809 3_A7_SNF3_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L10_id_MSn_negative.mzML at line 21
index 292 is out of bounds for axis 0 with size 292
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153942436-1577653 Batch7_NCIH441_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_129.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_33.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_33.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-3-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210115_AD_29.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P6_id_MSn_positive.mzML at line 21
index 757 is out of bounds for axis 0 with size 757
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153056223-1577220 Batch3_SCABER_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_G9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acs_P4G4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (acs_P4G4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124953155-1876796 12H10_rep_C_Proparacaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124953155-1876796 12H10_rep_C_Proparacaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151746152-1576578 Batch4_HS578T_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_aqueous_longstudy_230215_177.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argI_P3B5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024988 (argI_P3B5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I19_id_MSn_positive.mzML at line 21
index 629 is out of bounds for axis 0 with size 629
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample048_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151815297-1867848 05H07_rep_C_Etoposidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151815297-1867848 05H07_rep_C_Etoposidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ7_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD6_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_30_male_2022_1017_Michael_neg-0.0056.mzML at line 689
Premature end of data in tag binary line 25925, line 25925, column 3161786 (4_30_male_2022_1017_Michael_neg-0.0056.mzML, line 25925)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_158.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P12_id_MSn_positive.mzML at line 21
index 564 is out of bounds for axis 0 with size 564
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007510_031618-0.01Thr2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084958/ccms_peak/MMS1589-F1ter-4_2020-02-12_Seg1.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000084958/ccms_peak/MMS1589-F1ter-4_2020-02-12_Seg1.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125805397-1877170 13E03_rep_A_Alfaxaloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125805397-1877170 13E03_rep_A_Alfaxaloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201130380-1881784 16E09_rep_B_Homoveratrylamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201130380-1881784 16E09_rep_B_Homoveratrylamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125146929-1862828 03D07_rep_C_Pentoxifyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125146929-1862828 03D07_rep_C_Pentoxifyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine80.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine80.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EBM011B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153950834-1577660 Batch7_UO31_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/btuB_P3H11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (btuB_P3H11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201228153-1881827 16B01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201228153-1881827 16B01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_33_male_2022_1017_Michael_neg-0.0059.mzML at line 689
Premature end of data in tag binary line 23949, line 23949, column 1352548 (4_33_male_2022_1017_Michael_neg-0.0059.mzML, line 23949)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_rerun_G10_01_11769.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202024669-1878186 09E02_rep_D_Pranoprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202024669-1878186 09E02_rep_D_Pranoprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_A7_id_negative.mzML at line 21
index 266 is out of bounds for axis 0 with size 266
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092018672-1878636 13C03_rep_D_Nandrolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092018672-1878636 13C03_rep_D_Nandrolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S111.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S111.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122401544-1879906 15A08_rep_C_Valproic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122401544-1879906 15A08_rep_C_Valproic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091706314-1878484 13C10_rep_D_Chlormadinone_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091706314-1878484 13C10_rep_D_Chlormadinone_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_D3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD5_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_19032901_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_105b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150421534-1924400 1_E11_RGT2_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150421534-1924400 1_E11_RGT2_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080949/ccms_peak/peaks/3samples_sampl3_NEG.mzXML at line 689
attributes construct error, line 41, column 77 (3samples_sampl3_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample091.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/011_20uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yjiA_P3A8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (yjiA_P3A8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/662.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ3_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD5_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/16.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_C7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_A7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/ccms_peak/Raw_Spectrum_Files/ALZ_CBM_P_E3E3_C_31Jan18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arnA_#1_P4A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (arnA_#1_P4A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHF10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_blank_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L12_id_MSn_negative.mzML at line 21
index 323 is out of bounds for axis 0 with size 323
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_48.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/10 Sept 2021/converted/210916_tanaka02.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000094007/peak/mzXmL/Acid NEPC 'Navel' orange.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gatY_P3D1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (gatY_P3D1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_C12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200848607-1881664 16A02_rep_A_Nelfinavir_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200848607-1881664 16A02_rep_A_Nelfinavir_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ05151545.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_166.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N5_id_negative.mzML at line 21
index 275 is out of bounds for axis 0 with size 275
Error processing file: /data/datasets/server/MassIVE/MSV000085122/peak/pool3b.mzXML at line 689
Start tag expected, '<' not found, line 1, column 1 (pool3b.mzXML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yggF_P3C1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (yggF_P3C1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_12_P3A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (ctrl_12_P3A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093137293-1879162 14C07_rep_C_Methantheline_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093137293-1879162 14C07_rep_C_Methantheline_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151606336-1576495 Batch7_NCIH226_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pfkB_#5_P5H5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (pfkB_#5_P5H5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124950383-1862735 03F10_rep_C_Ketoprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124950383-1862735 03F10_rep_C_Ketoprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152528210-1868186 05A06_rep_D_Ascorbic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152528210-1868186 05A06_rep_D_Ascorbic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153700665-1868726 06G10_rep_C_Niridazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153700665-1868726 06G10_rep_C_Niridazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124243225-1862279 03H06_rep_A_Carmofura.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124243225-1862279 03H06_rep_A_Carmofura.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G15_id_MSn_negative.mzML at line 21
index 356 is out of bounds for axis 0 with size 356
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_362.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202303465-1878311 10C10_rep_A_Isoetharine_mesylate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202303465-1878311 10C10_rep_A_Isoetharine_mesylate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc066_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc066_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (26).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/852.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009410_20190702051823_IBD200_E4_A9.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151839091-1576622 Batch5_HCC1187_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_E11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_E11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125333334-1862914 03A04_rep_C_Chlorzoxazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125333334-1862914 03A04_rep_C_Chlorzoxazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125833443-1863160 04F08_rep_A_Benzydamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125833443-1863160 04F08_rep_A_Benzydamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cyoC_P3D6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (cyoC_P3D6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C10_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201805923-1882079 16C04_rep_C_1,8-Dihydroxyanthraquinonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201805923-1882079 16C04_rep_C_1,8-Dihydroxyanthraquinonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Arthrobacter_Pseudoarthrobacter_sp_MS2F07P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnG_P3E11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (phnG_P3E11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P19_id_MSn_positive.mzML at line 21
index 571 is out of bounds for axis 0 with size 571
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114311331-1922906 4_D1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114311331-1922906 4_D1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_17121406_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222837498-1869863 01D02_rep_A_Chloramphenicola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222837498-1869863 01D02_rep_A_Chloramphenicola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151659060-1925044 4_E2_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151659060-1925044 4_E2_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_56.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093526/peak/mzML/DIA/Sa02_Water_POS_DIA_10mz.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125357425-1876980 12D08_rep_D_Flurbiprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125357425-1876980 12D08_rep_D_Flurbiprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_A3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151842782-1867870 05C06_rep_C_Clenbuterol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151842782-1867870 05C06_rep_C_Clenbuterol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Apigenin_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153602370-1868678 06F06_rep_C_Mebhydroline_1,5-naphtalenedisulfonatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153602370-1868678 06F06_rep_C_Mebhydroline_1,5-naphtalenedisulfonatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211005_LKM_beads_mb_silica1_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_H1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190128094521.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_G11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201912868-1882132 16A10_rep_D_Ubenimexb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201912868-1882132 16A10_rep_D_Ubenimexb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/melB_P4C10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (melB_P4C10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095538/raw/adphepDD-adphepLD_12C_CE20_msAG241_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024776 (adphepDD-adphepLD_12C_CE20_msAG241_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190332839-1889796 Na.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1F09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ6_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBmegR124h2a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000090953/raw/mzML/220905_ED_Giovanni_sample_25cent.mzML at line 689
expected '>', line 239043, column 17 (220905_ED_Giovanni_sample_25cent.mzML, line 239043)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124734169-1862626 03C11_rep_B_Tolbutamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124734169-1862626 03C11_rep_B_Tolbutamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151531839-1924972 4_C9_SNF3_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151531839-1924972 4_C9_SNF3_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123638794-1876204 08F04_rep_C_Diosmina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123638794-1876204 08F04_rep_C_Diosmina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H3_id_MSn_negative.mzML at line 21
index 347 is out of bounds for axis 0 with size 347
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/473-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/622.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223001148-1869926 01F04_rep_A_Triflupromazine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223001148-1869926 01F04_rep_A_Triflupromazine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153015033-1577190 Batch3_PANC0403_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C14_id_MSn_positive.mzML at line 21
index 596 is out of bounds for axis 0 with size 596
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124559540-1862551 03E02_rep_B_Ranitidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124559540-1862551 03E02_rep_B_Ranitidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fre_P4C2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (fre_P4C2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1428.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1428.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124314604-1862304 03D02_rep_A_Midodrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124314604-1862304 03D02_rep_A_Midodrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123157087-1875978 08G01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123157087-1875978 08G01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122847540-1880128 15H05_rep_D_Rufloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122847540-1880128 15H05_rep_D_Rufloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D11_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081118/ccms_peak/Beers19_ms2ldaPLUS/NEGmode/Beer_multibeers_9_fullscan1.mzXML at line 689
Premature end of data in tag peaks line 24491, line 24495, column 13711 (Beer_multibeers_9_fullscan1.mzXML, line 24495)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130536660-1877517 13H04_rep_C_Nomegestrol_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130536660-1877517 13H04_rep_C_Nomegestrol_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/CPV_P_rep_1_B-C2_1_5841.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_159.mzXML at line 689
Premature end of data in tag peaks line 21527, line 21531, column 11843 (20121114_159.mzXML, line 21531)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L4_id_MSn_positive.mzML at line 21
index 422 is out of bounds for axis 0 with size 422
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112910309-1874297 11F10_rep_A_Fluvastatin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112910309-1874297 11F10_rep_A_Fluvastatin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fsaB_P3H11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (fsaB_P3H11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD1_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092407485-1878814 14E08_rep_A_Nelarabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092407485-1878814 14E08_rep_A_Nelarabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_A11_id_negative.mzML at line 21
index 256 is out of bounds for axis 0 with size 256
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_H6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_087a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_A2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/4-guanidinobutanoic_acid.mzXML at line 689
Premature end of data in tag peaks line 7927, line 7931, column 19946 (4-guanidinobutanoic_acid.mzXML, line 7931)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153115203-1577235 Batch3_SKMES1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124946777-1862732 03G05_rep_C_Oxymetazoline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124946777-1862732 03G05_rep_C_Oxymetazoline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_87.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample110.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082691/ccms_peak/ST000662/EX00303-lipidomics/Raw data/POS/20140613_Pooled.mzXML at line 689
Opening and ending tag mismatch: peaks line 42386 and msRun, line 56493, column 11 (20140613_Pooled.mzXML, line 56493)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113836893-1874704 11C11_rep_C_Ethaverine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113836893-1874704 11C11_rep_C_Ethaverine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223856553-1870334 01G06_rep_C_Diphenhydramine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223856553-1870334 01G06_rep_C_Diphenhydramine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dld_P4G10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (dld_P4G10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_C7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/374.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150653256-1924529 2_G2_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150653256-1924529 2_G2_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121009836-1879278 14H10_rep_D_Clocortolone_pivalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121009836-1879278 14H10_rep_D_Clocortolone_pivalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223851450-1870330 01D06_rep_C_Dapsoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223851450-1870330 01D06_rep_C_Dapsoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D10_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122252362-1867338 04C01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122252362-1867338 04C01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202216638-1878274 10E03_rep_A_Sulfapyridinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202216638-1878274 10E03_rep_A_Sulfapyridinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mocA_#2_P4F4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (mocA_#2_P4F4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folB_P3A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (folB_P3A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ3_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/PDI-flfl-plasma-VLDL-29-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122915238-1880150 15D04_rep_D_Mitotanea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122915238-1880150 15D04_rep_D_Mitotanea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D12_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K8_id_MSn_negative.mzML at line 21
index 318 is out of bounds for axis 0 with size 318
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201032877-1877747 09G01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201032877-1877747 09G01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3T4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3T4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152623797-1576996 Batch1_HCC15_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B3_id_MSn_positive.mzML at line 21
index 457 is out of bounds for axis 0 with size 457
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ilvD_P4H3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (ilvD_P4H3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_107.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_107.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120914415-1879236 14B11_rep_D_Oxaprozina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120914415-1879236 14B11_rep_D_Oxaprozina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V6_LH.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_E12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_H1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GF5_01_16850.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000079772/ccms_peak/Body04_Soil/B10_Soil_2013_016_18_C.mzXML at line 117
The truth value of an array with more than one element is ambiguous. Use a.any() or a.all()
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix10_160601231346.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2C01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153604548-1577470 Batch4_RT4_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201511215-1881949 16G07_rep_C_Alosetron_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201511215-1881949 16G07_rep_C_Alosetron_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121554694-1879535 15G04_rep_A_Gemcitabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121554694-1879535 15G04_rep_A_Gemcitabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124651282-1876691 09F04_rep_A_Promazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124651282-1876691 09F04_rep_A_Promazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR331_5h3a.mzML at line 689
Opening and ending tag mismatch: binary line 277846 and binaryDataArray, line 277848, column 31 (pMIBSDR331_5h3a.mzML, line 277848)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/888.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5A020.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075950.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150921809-1924657 2_F4_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150921809-1924657 2_F4_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223959750-2227739 pooled.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122821458-1875807 08C01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122821458-1875807 08C01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113634048-1874605 11D11_rep_C_Ethopropazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113634048-1874605 11D11_rep_C_Ethopropazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165801018-2227510 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/226.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_LS18.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123711372-1876230 08G10_rep_C_Aniracetama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123711372-1876230 08G10_rep_C_Aniracetama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_rerun_A8_BA8_01_12034.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121826662-1879652 15D03_rep_B_Mesnaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121826662-1879652 15D03_rep_B_Mesnaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151356514-1576388 Batch6_CALU3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ1_5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145632144-1863948 02D04_rep_A_Ciprofloxacin hydrochloride monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145632144-1863948 02D04_rep_A_Ciprofloxacin hydrochloride monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/65-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113441147-1874516 11G08_rep_C_Paromomycin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113441147-1874516 11G08_rep_C_Paromomycin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/zwf_P4G1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (zwf_P4G1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151414786-1576403 Batch7_CHAGOK1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112713161-1874204 11G11_rep_A_Luteolina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112713161-1874204 11G11_rep_A_Luteolina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD1_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111903759-1872565 10E06_rep_C_Ethoxyquina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111903759-1872565 10E06_rep_C_Ethoxyquina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_94.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151540551-1924978 4_D2_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151540551-1924978 4_D2_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124419896-1862356 03C04_rep_A_Pargyline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124419896-1862356 03C04_rep_A_Pargyline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-084_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GC2_01_17163.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_A10_id_negative.mzML at line 21
index 252 is out of bounds for axis 0 with size 252
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222755325-1869831 01F09_rep_A_Oxethazainea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222755325-1869831 01F09_rep_A_Oxethazainea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_049_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_43.mzXML at line 689
Premature end of data in tag peaks line 19130, line 19134, column 11844 (20121114_43.mzXML, line 19134)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165705423-2227459 Healthy7.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD6_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130445816-1877477 13F04_rep_B_Deptropine_citratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130445816-1877477 13F04_rep_B_Deptropine_citratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D4_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_1_RESV_20uM_POS.mzXML at line 689
attributes construct error, line 38, column 82 (C2C12_1_RESV_20uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130052683-1877296 13A04_rep_A_Enilconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130052683-1877296 13A04_rep_A_Enilconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD5_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200610949-1881548 16D10_rep_A_Dofetilideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200610949-1881548 16D10_rep_A_Dofetilideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_70.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_70.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4H02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD4_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087805/ccms_peak/Media_C1_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124406306-1876563 09B04_rep_A_Mepenzolate_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124406306-1876563 09B04_rep_A_Mepenzolate_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H7_id_MSn_negative.mzML at line 21
index 344 is out of bounds for axis 0 with size 344
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD3_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Pool_9_B-A2_1_5539.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112549072-1874137 11E03_rep_A_Trimeprazine_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112549072-1874137 11E03_rep_A_Trimeprazine_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_B5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123304624-1867826 05C02_rep_B_Furosemidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123304624-1867826 05C02_rep_B_Furosemidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/BeautyProducts_Vol4/BP10_01_17312.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNT318_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1554.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1554.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095819/raw/202312_216_PA10_10ppb_1uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223122697-1869987 01F06_rep_A_Acetohexamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223122697-1869987 01F06_rep_A_Acetohexamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/462.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151550695-1576482 Batch7_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H14_id_MSn_negative.mzML at line 21
index 324 is out of bounds for axis 0 with size 324
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_B9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_G12_id_negative.mzML at line 21
index 273 is out of bounds for axis 0 with size 273
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122527556-1867464 05C11_rep_A_Clozapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122527556-1867464 05C11_rep_A_Clozapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_16092759_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100647044-1869089 07H04_rep_A_Pentamidine_isethionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100647044-1869089 07H04_rep_A_Pentamidine_isethionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_C8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153137362-1577253 Batch4_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101539001-1869512 07C05_rep_C_Etifeninb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101539001-1869512 07C05_rep_C_Etifeninb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/32_D25062013T0257_1399CBU_0009_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GC1_01_11648.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GF6_01_17211.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_C10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-112_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165832879-2227539 PAT48.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153553711-1577461 Batch5_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlD2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraControlD2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123648706-1876212 08F11_rep_C_Acamprosate_calciuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123648706-1876212 08F11_rep_C_Acamprosate_calciuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_xx4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/414.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/182-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-130_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007641_032118-0.01Thr6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_G8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151306422-1576346 Batch7_CHAGOK1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_2_P_rep_4_B-B2_1_5643.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130053999-1877297 13B09_rep_A_Memantine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130053999-1877297 13B09_rep_A_Memantine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2F09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223113476-1869980 01H11_rep_A_Trimethobenzamide hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223113476-1869980 01H11_rep_A_Trimethobenzamide hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113558629-1874577 11D03_rep_C_Cefoxitin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113558629-1874577 11D03_rep_C_Cefoxitin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gadB_P4F9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (gadB_P4F9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122343059-1879892 15C09_rep_C_Cladribinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122343059-1879892 15C09_rep_C_Cladribinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145731209-1863996 02G03_rep_A_Dipyridamoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145731209-1863996 02G03_rep_A_Dipyridamoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E13_id_MSn_positive.mzML at line 21
index 431 is out of bounds for axis 0 with size 431
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_12_NOR_47.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_12_NOR_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_global_LFD42_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A5_id_MSn_positive.mzML at line 21
index 617 is out of bounds for axis 0 with size 617
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S53.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S53.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_28_male_2022_1017_Michael_neg-0.0052.mzML at line 689
Premature end of data in tag binary line 24253, line 24253, column 474990 (4_28_male_2022_1017_Michael_neg-0.0052.mzML, line 24253)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125943253-1863219 04D06_rep_A_Fenofibrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125943253-1863219 04D06_rep_A_Fenofibrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ndh_P3G5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (ndh_P3G5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ispA_#4_P3H9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (ispA_#4_P3H9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130902169-1877681 13B11_rep_C_Piribedil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130902169-1877681 13B11_rep_C_Piribedil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1424.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1424.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153438048-1577399 Batch5_NCIH727_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153908254-1577624 Batch6_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/417.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145605723-1863927 02B03_rep_A_Zimelidine dihydrochloride monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145605723-1863927 02B03_rep_A_Zimelidine dihydrochloride monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114235823-1874897 11E09_rep_D_Iodixanolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114235823-1874897 11E09_rep_D_Iodixanolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113045035-1874365 11D02_rep_B_Butacaineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113045035-1874365 11D02_rep_B_Butacaineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_348.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092953546-1879085 14D02_rep_C_Imidureab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092953546-1879085 14D02_rep_C_Imidureab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101512125-1869492 07E01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101512125-1869492 07E01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1376.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1376.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3D04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123927888-1876339 08D06_rep_C_Exemestaneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123927888-1876339 08D06_rep_C_Exemestaneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_E11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM4V003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202254523-1878304 10A02_rep_A_Althiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202254523-1878304 10A02_rep_A_Althiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_aqueous_longstudy_230215_172.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB1C14.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111919861-1921696 2_F5_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111919861-1921696 2_F5_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6B04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alaA_P4F10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (alaA_P4F10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150418002706.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_07_leg_skin_control_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_07_leg_skin_control_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153527139-1577439 Batch5_HCT116_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124257069-1862290 03C10_rep_A_Aminopurine,_6-benzylb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124257069-1862290 03C10_rep_A_Aminopurine,_6-benzylb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_14_P3A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024901 (ctrl_14_P3A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130210116-1877356 13B08_rep_B_Zardaverineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130210116-1877356 13B08_rep_B_Zardaverineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132930756-1733908 1pool Wound5D 2 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100351461-1868949 06A05_rep_D_Idebenonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100351461-1868949 06A05_rep_D_Idebenonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_Blood1_POS.mzXML at line 689
attributes construct error, line 38, column 74 (Person4_Blood1_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_2_RESV_0uM_POS.mzXML at line 689
attributes construct error, line 38, column 81 (C2C12_2_RESV_0uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_77.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-051_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201722936-1882046 16B01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201722936-1882046 16B01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xylG_#1_P4H11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (xylG_#1_P4H11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F18_id_MSn_negative.mzML at line 21
index 297 is out of bounds for axis 0 with size 297
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dsbC_#1_P3F3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (dsbC_#1_P3F3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122745218-1880079 15H07_rep_D_Rosiglitazone_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122745218-1880079 15H07_rep_D_Rosiglitazone_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009658_IBD200_E19_A9.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152616580-1576990 Batch1_HCC1143_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093236948-1879210 14F04_rep_C_Misoprostola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093236948-1879210 14F04_rep_C_Misoprostola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_15102101_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hB1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hB1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_MICU_199_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170207_061EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a1/1c41a2e89093238ee4ba601ef64dcc/input_file/SH8_20170207_061EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111646726-1921565 1_E8_GAP1_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111646726-1921565 1_E8_GAP1_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201054345-1881757 16H09_rep_B_Brimonidine_L-Tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201054345-1881757 16H09_rep_B_Brimonidine_L-Tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_F3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092744/ccms_peak/hem25D_veh_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153327750-1577342 Batch4_CAKI1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091846652-1878564 13F06_rep_D_Ethamsylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091846652-1878564 13F06_rep_D_Ethamsylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hinT_#2_P6F9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (hinT_#2_P6F9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123356330-1876074 08E02_rep_B_Tranilasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123356330-1876074 08E02_rep_B_Tranilasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201719273-1878044 09B06_rep_C_Halcinonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201719273-1878044 09B06_rep_C_Halcinonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydfG_P3D6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ydfG_P3D6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/006_Ammonia_Day2_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.hyg_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201218764-1881820 16A03_rep_B_Silodosinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201218764-1881820 16A03_rep_B_Silodosinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD6_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Pool_10_B-A2_1_5550.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_G7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/843.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151609716-1925002 4_G2_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151609716-1925002 4_G2_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112128218-1921806 2_B3_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112128218-1921806 2_B3_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121205866-1879365 14C10_rep_D_Mesalamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121205866-1879365 14C10_rep_D_Mesalamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/398.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GA6_01_17139.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_C8_id_negative.mzML at line 21
index 188 is out of bounds for axis 0 with size 188
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-128_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223538150-1870181 01E10_rep_B_Amyleine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223538150-1870181 01E10_rep_B_Amyleine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122634626-1867518 05G03_rep_A_Betaxolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122634626-1867518 05G03_rep_A_Betaxolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_105.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201147938-1881797 16F02_rep_B_Irbesartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201147938-1881797 16F02_rep_B_Irbesartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNS615_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_38_RIN_30.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_38_RIN_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101411107-1869444 07H04_rep_C_Pentamidine_isethionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101411107-1869444 07H04_rep_C_Pentamidine_isethionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/454.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112219858-1873585 10F05_rep_D_Fluocinonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112219858-1873585 10F05_rep_D_Fluocinonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J16_id_negative.mzML at line 21
index 271 is out of bounds for axis 0 with size 271
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_E9_id_positive.mzML at line 21
index 352 is out of bounds for axis 0 with size 352
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_B7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C22_id_negative.mzML at line 21
index 242 is out of bounds for axis 0 with size 242
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-041.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-041.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112048771-1921772 2_G11_GAP1_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112048771-1921772 2_G11_GAP1_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A19_id_MSn_positive.mzML at line 21
index 695 is out of bounds for axis 0 with size 695
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C8_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH48.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153528361-1868651 06E09_rep_C_Hydroxytacrine_maleate_(R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153528361-1868651 06E09_rep_C_Hydroxytacrine_maleate_(R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101845123-1869664 07H03_rep_D_Selegiline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101845123-1869664 07H03_rep_D_Selegiline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GA8_01_11621.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151343454-1576377 Batch6_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101702086-1869580 07A01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101702086-1869580 07A01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201612574-1881993 16C09_rep_C_Actarita.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201612574-1881993 16C09_rep_C_Actarita.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/btuB_P3H11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (btuB_P3H11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_B5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153336394-1577349 Batch4_NCIH1666_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113642436-1874612 11G03_rep_C_Raloxifene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113642436-1874612 11G03_rep_C_Raloxifene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D11_id_MSn_positive.mzML at line 21
index 664 is out of bounds for axis 0 with size 664
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112205229-1921838 3_B4_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112205229-1921838 3_B4_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J2_id_negative.mzML at line 21
index 247 is out of bounds for axis 0 with size 247
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114328846-1874940 12D02_rep_A_(+)-Isoproterenol_(+)-bitartrate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114328846-1874940 12D02_rep_A_(+)-Isoproterenol_(+)-bitartrate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201227104-1877830 09B10_rep_B_6-Furfurylaminopurinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201227104-1877830 09B10_rep_B_6-Furfurylaminopurinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113640070-1922560 2_G11_IZH2_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113640070-1922560 2_G11_IZH2_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153026408-1868415 06D09_rep_B_Doxorubicin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153026408-1868415 06D09_rep_B_Doxorubicin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122139315-1867280 04A09_rep_D_Clonidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122139315-1867280 04A09_rep_D_Clonidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111712534-1871611 10E05_rep_B_Furaltadone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111712534-1871611 10E05_rep_B_Furaltadone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125552235-1877067 12H10_rep_D_Proparacaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125552235-1877067 12H10_rep_D_Proparacaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glgC_P3D6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (glgC_P3D6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_A5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122227233-1879834 15C05_rep_C_Carprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122227233-1879834 15C05_rep_C_Carprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223226668-1870035 01B07_rep_B_Sulfathiazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223226668-1870035 01B07_rep_B_Sulfathiazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Positive_FGF1_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hD2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hD2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_165.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-1-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_A8_id_positive.mzML at line 21
index 317 is out of bounds for axis 0 with size 317
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112833723-1874268 11D08_rep_A_Carbenoxolone_disodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112833723-1874268 11D08_rep_A_Carbenoxolone_disodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_E2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD2_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152843666-1868337 06E08_rep_A_Hydrocortisone_baseb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152843666-1868337 06E08_rep_A_Hydrocortisone_baseb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170127_019ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/0c/1bd19ae28d65bac5c56d24664e69e8/input_file/MMW4_20170127_019ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112831215-1922177 4_F4_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112831215-1922177 4_F4_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125541620-1877059 12B03_rep_D_Flubendazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125541620-1877059 12B03_rep_D_Flubendazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125845398-1863170 04A02_rep_A_Mexiletine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125845398-1863170 04A02_rep_A_Mexiletine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125453099-1877022 12E01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125453099-1877022 12E01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A10Bs5mm_black_P1-A-11_01_23062.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD4_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/msrC_P3H9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (msrC_P3H9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125425864-1862957 03D02_rep_D_Midodrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125425864-1862957 03D02_rep_D_Midodrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ6_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc048_neg.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc048_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/770.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murB_P5G7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (murB_P5G7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A1_id_MSn_negative_20240410181032.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_137.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124319742-1862308 03B01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124319742-1862308 03B01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malE_P5E2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (malE_P5E2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNT372_MS_B.mzXML at line 689
Premature end of data in tag peaks line 31028, line 31031, column 149871 (CNT372_MS_B.mzXML, line 31031)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/003_1016_1_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8E02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R324h3a.mzML at line 88
Invalid base64-encoded string: number of data characters (5433) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151825795-1576611 Batch3_J82_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111906353-1921685 2_C10_GAP1_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111906353-1921685 2_C10_GAP1_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5A006.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6B07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_E7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113343106-1874506 11E06_rep_B_Amiprilose_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113343106-1874506 11E06_rep_B_Amiprilose_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/358.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112358280-1874049 10F11_rep_D_Cinoxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112358280-1874049 10F11_rep_D_Cinoxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD2_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B3_id.mzML at line 21
index 537 is out of bounds for axis 0 with size 537
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6C10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125812014-1877175 13G03_rep_A_Nifekalanta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125812014-1877175 13G03_rep_A_Nifekalanta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151919602-1576656 Batch7_NCIH510_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_13_Blood_CMC_control_NEG.mzXML at line 689
attributes construct error, line 38, column 91 (Mouse_13_Blood_CMC_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000088606/ccms_peak/210116_AR_02_AGE015_F03_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122552608-1867484 05G02_rep_A_Lidoflazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122552608-1867484 05G02_rep_A_Lidoflazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_70.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1427.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1427.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123933152-1876343 08H08_rep_D_Levetiracetamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123933152-1876343 08H08_rep_D_Levetiracetamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mmuP_#1_P5G11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (mmuP_#1_P5G11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101806391-1869633 07C11_rep_D_Cyclizine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101806391-1869633 07C11_rep_D_Cyclizine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/180_141.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30159 - GI-17-563.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4B01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O9_id.mzML at line 21
index 599 is out of bounds for axis 0 with size 599
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/56-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150858498-1924637 2_G11_RGT2_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150858498-1924637 2_G11_RGT2_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K6_id_negative.mzML at line 21
index 256 is out of bounds for axis 0 with size 256
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121235217-1879387 14C03_rep_D_Ioxaglic_acid_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121235217-1879387 14C03_rep_D_Ioxaglic_acid_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081013.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O17_id_MSn_negative.mzML at line 21
index 315 is out of bounds for axis 0 with size 315
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121934635-1867180 04D05_rep_C_Prednisolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121934635-1867180 04D05_rep_C_Prednisolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112513664-1922003 3_E7_GPR1_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112513664-1922003 3_E7_GPR1_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2G006.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample054.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person16_plasma_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person16_plasma_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111609028-1871562 10F02_rep_B_Alclometasone_dipropionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111609028-1871562 10F02_rep_B_Alclometasone_dipropionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/835.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_01_dorsal_skin_control_oral_POS.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_01_dorsal_skin_control_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151747338-1576579 Batch4_HS578T_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223336444-1870088 01E01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223336444-1870088 01E01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151300637-1576341 Batch7_CORL88_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8H04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_67_Blank.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_67_Blank.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224058713-1870427 01H01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224058713-1870427 01H01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123213970-1867785 05C05_rep_B_Clorgyline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123213970-1867785 05C05_rep_B_Clorgyline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_05_dorsal_skin_RESV_oral_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_05_dorsal_skin_RESV_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190131224532.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pepN_#1_P4B11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (pepN_#1_P4B11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fadL_P3H10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (fadL_P3H10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lsrF_#1_P3G2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (lsrF_#1_P3G2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample206.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaB_P4B9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (waaB_P4B9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121044627-1879304 14G08_rep_D_Ramiprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121044627-1879304 14G08_rep_D_Ramiprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8H05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151804325-1576593 Batch4_HS578T_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_A2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124934315-1876782 12H05_rep_C_Tyloxapola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124934315-1876782 12H05_rep_C_Tyloxapola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223557474-1870196 01E01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223557474-1870196 01E01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096497/peak/20200816_ProgressCurveAnalysis_AceA_set5_eff7_t6_rep1.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000096497/peak/20200816_ProgressCurveAnalysis_AceA_set5_eff7_t6_rep1.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092402167-1878810 14D07_rep_A_Ciprofibratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092402167-1878810 14D07_rep_A_Ciprofibratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130300408-1877395 13G02_rep_B_Isradipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130300408-1877395 13G02_rep_B_Isradipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2A01P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_85.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD6_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_96.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_120_3A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F17_id_MSn_positive.mzML at line 21
index 661 is out of bounds for axis 0 with size 661
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1207.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1207.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_H7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3C3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3C3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_52_AC+25.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180914_ES_H3K_batch2_repC_20.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120905314-1879229 14F06_rep_D_Cyclopentolate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120905314-1879229 14F06_rep_D_Cyclopentolate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125000808-1876802 12D05_rep_C_Estronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125000808-1876802 12D05_rep_C_Estronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J19_id_MSn_positive.mzML at line 21
index 395 is out of bounds for axis 0 with size 395
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153146142-1577260 Batch4_NCIH2286_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121958669-1879721 15F02_rep_B_Topotecanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121958669-1879721 15F02_rep_B_Topotecanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152134269-1576763 Batch2_MDAMB468_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J9_id_MSn_negative.mzML at line 21
index 325 is out of bounds for axis 0 with size 325
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_C9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123926655-1876338 08D06_rep_C_Exemestanea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123926655-1876338 08D06_rep_C_Exemestanea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220222_LKM_Yeast_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB1B07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112048052-1873032 10C02_rep_C_Nadidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112048052-1873032 10C02_rep_C_Nadidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122802260-1875792 08D01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122802260-1875792 08D01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/763.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/cal_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GG6_01_11723.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101050705-1869284 07C05_rep_B_Etifeninb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101050705-1869284 07C05_rep_B_Etifeninb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/295.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121141669-1879347 14B03_rep_D_Iopanoic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121141669-1879347 14B03_rep_D_Iopanoic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112231631-1921861 3_E5_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112231631-1921861 3_E5_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B5_id.mzML at line 21
index 517 is out of bounds for axis 0 with size 517
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-cc7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092445975-1878844 14H07_rep_B_Dorzolamide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092445975-1878844 14H07_rep_B_Dorzolamide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101456154-1869480 07E09_rep_C_Triflusalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101456154-1869480 07E09_rep_C_Triflusalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100508426-1869010 06A04_rep_D_Thyroxine_(L)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100508426-1869010 06A04_rep_D_Thyroxine_(L)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-020_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_96.mzXML at line 689
Premature end of data in tag peaks line 33138, line 33142, column 3653 (20121114_96.mzXML, line 33142)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122639448-1867522 05E04_rep_A_Colchicinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122639448-1867522 05E04_rep_A_Colchicinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30157 - GI-17-500.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C23_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/citE_#1_P3G2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (citE_#1_P3G2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152258833-1576830 Batch2_NCIH358_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M23_id_negative.mzML at line 21
index 254 is out of bounds for axis 0 with size 254
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007635_032118-0.01Thr3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113922238-1922702 3_C5_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113922238-1922702 3_C5_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dhaM_#1_P5G8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (dhaM_#1_P5G8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151300637-1576341 Batch7_CORL88_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_E6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_56.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_G1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HaCaT_2_RESV_20uM_NEG.mzXML at line 689
attributes construct error, line 38, column 82 (HaCaT_2_RESV_20uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cadA_P3D5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (cadA_P3D5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153214354-1868498 06E10_rep_B_Pilocarpine_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153214354-1868498 06E10_rep_B_Pilocarpine_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130811126-1877640 13C02_rep_C_Nitrocaramiphen_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130811126-1877640 13C02_rep_C_Nitrocaramiphen_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151821604-1867853 05A06_rep_C_Ascorbic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151821604-1867853 05A06_rep_C_Ascorbic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHK05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_E12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_06_287_prot_40_IMS_26Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145628339-1863945 02A10_rep_A_Busulfana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145628339-1863945 02A10_rep_A_Busulfana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P4_id_MSn_positive.mzML at line 21
index 785 is out of bounds for axis 0 with size 785
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_0124_190124235212.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/338.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Bosea_LYD012.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GD7_01_17183.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H18_id_MSn_negative.mzML at line 21
index 324 is out of bounds for axis 0 with size 324
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122703380-1867541 05E05_rep_A_Metergolineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122703380-1867541 05E05_rep_A_Metergolineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12onlyDiluted_Replicate1_Level1_MSMS_pos.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_3_B_rep_3_B-A8_1_5827.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122515387-1867454 05F04_rep_A_Amethopterin_(R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122515387-1867454 05F04_rep_A_Amethopterin_(R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample095.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fecD_P3H9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (fecD_P3H9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD2_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_04_076_prot_34_IMS_8Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_E10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151758102-1576588 Batch3_5637_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121759223-1879631 15D10_rep_B_Anthralinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121759223-1879631 15D10_rep_B_Anthralinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113946826-1922724 3_D7_STE2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113946826-1922724 3_D7_STE2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB1H07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_112.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hB2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hB2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GC2_01_17039.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124118861-1876427 08G06_rep_D_Cytarabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124118861-1876427 08G06_rep_D_Cytarabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bcp_P3A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (bcp_P3A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202224067-1882281 16C04_rep_D_1,8-Dihydroxyanthraquinonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202224067-1882281 16C04_rep_D_1,8-Dihydroxyanthraquinonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151503992-1576444 Batch6_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009560_IBD200_E13_B4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130549056-1877527 13D11_rep_C_Lymecyclinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130549056-1877527 13D11_rep_C_Lymecyclinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_G7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125821047-1877182 13E04_rep_A_Azapropazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125821047-1877182 13E04_rep_A_Azapropazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084666/raw/InterSpec_SppSwarms/00194_eugeoe-6.mzXML at line 689
Premature end of data in tag peaks line 9418, line 9418, column 24701 (00194_eugeoe-6.mzXML, line 9418)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200629855-1881562 16H03_rep_A_Pemetrexed_disodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200629855-1881562 16H03_rep_A_Pemetrexed_disodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_SERUM_V4_CAT.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201946248-1882158 16F04_rep_D_Terbinafineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201946248-1882158 16F04_rep_D_Terbinafineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gldA_P4E5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (gldA_P4E5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101443625-1869470 07E02_rep_C_Lofexidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101443625-1869470 07E02_rep_C_Lofexidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_192.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_G6_id_negative.mzML at line 21
index 245 is out of bounds for axis 0 with size 245
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125625712-1863054 03D05_rep_D_Nimesulidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125625712-1863054 03D05_rep_D_Nimesulidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD3_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_8_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122740233-1880075 15G09_rep_D_Cilnidipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122740233-1880075 15G09_rep_D_Cilnidipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F6_id_MSn_negative.mzML at line 21
index 288 is out of bounds for axis 0 with size 288
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165909250-2227573 PAT50.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111531577-1921500 1_A11_GAP1_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111531577-1921500 1_A11_GAP1_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/chbB_#1_P4G1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (chbB_#1_P4G1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223826070-2227658 pooled.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person11_blood_youth_POS.mzXML at line 689
attributes construct error, line 41, column 100 (Person11_blood_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224244732-1870510 01G11_rep_D_Tolnaftateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224244732-1870510 01G11_rep_D_Tolnaftateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S25_0123_190124003728.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101705858-1869583 07B07_rep_C_Tiaprofenic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101705858-1869583 07B07_rep_C_Tiaprofenic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151527930-1576463 Batch7_HARA_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M19_id_MSn_positive.mzML at line 21
index 678 is out of bounds for axis 0 with size 678
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_H1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200901975-1881674 16G01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200901975-1881674 16G01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_042ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/6c/b129a80284caef1e1d8fd6750a964f/input_file/QC_20170127_042ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2L001A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C4_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151322038-1576359 Batch6_NCIH1838_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170127_031ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/89/265d2ac0daef0a1ab4eaf189068a8a/input_file/SH9_20170127_031ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151936365-1576670 Batch1A_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_4_Blood_HO_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 86 (Mouse_4_Blood_HO_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112843980-1922189 4_D8_GPR1_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112843980-1922189 4_D8_GPR1_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150400191-1924382 1_G1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150400191-1924382 1_G1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG007B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124427065-1876580 09H02_rep_A_Sulfabenzamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124427065-1876580 09H02_rep_A_Sulfabenzamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113358599-1922421 2_E1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113358599-1922421 2_E1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114327951-1922921 4_F8_STE2_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114327951-1922921 4_F8_STE2_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009579_IBD200_E14_A9.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125817733-1863147 04C10_rep_A_Clomipramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125817733-1863147 04C10_rep_A_Clomipramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113344306-1874507 11E06_rep_B_Amiprilose_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113344306-1874507 11E06_rep_B_Amiprilose_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075194.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sucC_#1_P4D5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (sucC_#1_P4D5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100449911-1868995 06A01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100449911-1868995 06A01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/804.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/745.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123327203-1876050 08G08_rep_B_Folic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123327203-1876050 08G08_rep_B_Folic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096550/peak/Bigelow_169.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000096550/peak/Bigelow_169.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009357_20190621035600_IBD200_E1_B4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201459515-1877942 09D05_rep_C_Nalidixic_acid_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201459515-1877942 09D05_rep_C_Nalidixic_acid_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/695.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/19_D24062013T2042_1399CBU_0013_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/189-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202117123-1878227 09C01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202117123-1878227 09C01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_06_leg_muscle_RESV_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_06_leg_muscle_RESV_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145702813-1863973 02C05_rep_A_Famotidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145702813-1863973 02C05_rep_A_Famotidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR224h3b.mzML at line 689
Unescaped '<' not allowed in attributes values, line 152491, column 596 (pBpumR224h3b.mzML, line 152491)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_236.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/leuA_P3H8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (leuA_P3H8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L17_id_MSn_negative.mzML at line 21
index 309 is out of bounds for axis 0 with size 309
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O18_id_MSn_positive.mzML at line 21
index 743 is out of bounds for axis 0 with size 743
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201632654-1878009 09A02_rep_C_Sulmazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201632654-1878009 09A02_rep_C_Sulmazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET36.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET36.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1101.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123215517-1875993 08G04_rep_B_Pyridoxine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123215517-1875993 08G04_rep_B_Pyridoxine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_67.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G18_id_MSn_negative.mzML at line 21
index 318 is out of bounds for axis 0 with size 318
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111510813-1921097 1_F8_GAP1_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111510813-1921097 1_F8_GAP1_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD2_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152236202-1576812 Batch2_NCIH2085_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potG_P4D10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (potG_P4D10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112756939-1874239 11C06_rep_A_Trichlormethiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112756939-1874239 11C06_rep_A_Trichlormethiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD5_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113848163-1874713 11F11_rep_D_Methylhydantoin-5-(L)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113848163-1874713 11F11_rep_D_Methylhydantoin-5-(L)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152620243-1576993 Batch2_OVCAR8_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_G3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101231033-1869364 07F05_rep_B_Atovaquoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101231033-1869364 07F05_rep_B_Atovaquoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control102_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control102_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153118975-1868455 06F09_rep_B_Melatoninb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153118975-1868455 06F09_rep_B_Melatoninb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223726665-1870264 01C07_rep_C_Cimetidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223726665-1870264 01C07_rep_C_Cimetidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152759577-1868303 06C11_rep_A_Cisaprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152759577-1868303 06C11_rep_A_Cisaprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125524944-1863005 03E05_rep_D_Flumequineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125524944-1863005 03E05_rep_D_Flumequineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150554967-1924479 1_G10_RGT2_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150554967-1924479 1_G10_RGT2_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201612528-1877994 09C04_rep_C_Zileutona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201612528-1877994 09C04_rep_C_Zileutona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125744264-1863119 04B04_rep_A_Norethindroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125744264-1863119 04B04_rep_A_Norethindroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121151297-1879354 14D04_rep_D_Bethanechol_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121151297-1879354 14D04_rep_D_Bethanechol_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD2_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113010386-1874342 11G06_rep_B_Simvastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113010386-1874342 11G06_rep_B_Simvastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111630304-1921551 1_A4_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111630304-1921551 1_A4_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/160_126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125023686-1876819 12E02_rep_C_Nizatidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125023686-1876819 12E02_rep_C_Nizatidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_72_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_72_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (13).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET85.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET85.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/950.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153824471-1577587 Batch7_NCIH441_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009667_20190805054436_IBD200_E18_A2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091959245-1878621 13D04_rep_D_Ribavirinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091959245-1878621 13D04_rep_D_Ribavirinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145813005-1864030 02C04_rep_A_Cyproheptadine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145813005-1864030 02C04_rep_A_Cyproheptadine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_A2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/368.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D3_preFOS_1_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F18_id_negative.mzML at line 21
index 242 is out of bounds for axis 0 with size 242
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xylF_P3D5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (xylF_P3D5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111804728-1921632 2_F10_GAP1_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111804728-1921632 2_F10_GAP1_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S005_0126_190128101835.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210314_LKM_control_beads_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Bosea_LYD012.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/osmF_P3C7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (osmF_P3C7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114229750-1874892 11A08_rep_D_Chloropyramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114229750-1874892 11A08_rep_D_Chloropyramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111616893-1871568 10A06_rep_B_Deferoxamine_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111616893-1871568 10A06_rep_B_Deferoxamine_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/blank_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_03_leg_muscle_control_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_03_leg_muscle_control_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/676.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mdfA_P5D10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (mdfA_P5D10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ6_1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112427664-1921963 3_C11_GPR1_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112427664-1921963 3_C11_GPR1_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123135071-1875960 08F07_rep_B_Demecarium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123135071-1875960 08F07_rep_B_Demecarium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092318234-1878776 14E11_rep_A_Homosalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092318234-1878776 14E11_rep_A_Homosalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152008201-1576695 Batch1_HCC1143_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111506286-1921093 1_F10_GAP1_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111506286-1921093 1_F10_GAP1_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-blank1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Column2_test_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G9_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_G9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GE6_01_11688.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092916021-1879055 14F07_rep_C_Estriolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092916021-1879055 14F07_rep_C_Estriolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GC11_01_11660.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000084208/peak/ALIMENTO LARVAL LARVAS_C1_NEG_1-3_01_1021.mzXML at line 689
Specification mandates value for attribute cePCt8RF3RV0bhT59EXeRtRc7j8EReU4pHBc09RF6FYkanRShEXt8IR6uuoURfeYFHUf7vRF, line 17918, column 83 (ALIMENTO LARVAL LARVAS_C1_NEG_1-3_01_1021.mzXML, line 17918)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I6_id_MSn_positive.mzML at line 21
index 458 is out of bounds for axis 0 with size 458
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170127_017ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/08/d28471db096e89a0d1c4852c25e1cb/input_file/MMW3_20170127_017ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100707252-1869106 07D02_rep_A_Fluoxetine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100707252-1869106 07D02_rep_A_Fluoxetine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201018033-1877736 09D06_rep_B_Oxacillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201018033-1877736 09D06_rep_B_Oxacillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150802773-1864968 02C09_rep_D_Nomifensine maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150802773-1864968 02C09_rep_D_Nomifensine maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121639767-1867042 04G05_rep_B_Econazole_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121639767-1867042 04G05_rep_B_Econazole_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202140126-1878245 09D06_rep_D_Oxacillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202140126-1878245 09D06_rep_D_Oxacillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145544420-1863910 02E08_rep_A_Isoconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145544420-1863910 02E08_rep_A_Isoconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/16032021_Batch06_QC_ 2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2D02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112420730-1874067 10H11_rep_D_Amrinoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112420730-1874067 10H11_rep_D_Amrinoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fabB_P3D7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (fabB_P3D7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3C4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3C4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_101.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121833277-1879657 15F01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121833277-1879657 15F01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person2_Plasma_NEG.mzXML at line 689
attributes construct error, line 38, column 74 (Person2_Plasma_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_142.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_142.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-110_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190119_ES_H3K_batch14_repC_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122033686-1879748 15D06_rep_B_Triclosana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122033686-1879748 15D06_rep_B_Triclosana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123030446-1875908 08C10_rep_A_Azelastine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123030446-1875908 08C10_rep_A_Azelastine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/233.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/GNPS-Nudibranch/Data-MS2/Converted/Standard_2.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112112329-1873051 10A03_rep_C_Isopyrin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112112329-1873051 10A03_rep_C_Isopyrin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152540246-1576960 Batch1_CALU3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121441278-1866950 04C10_rep_B_Clomipramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121441278-1866950 04C10_rep_B_Clomipramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/-ve_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125422773-1876999 12H09_rep_D_Urosiola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125422773-1876999 12H09_rep_D_Urosiola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112136860-1873551 10D08_rep_C_Chlorotrianisenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112136860-1873551 10D08_rep_C_Chlorotrianisenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bioB_P3F12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (bioB_P3F12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case246_pos.mzXML at line 689
attributes construct error, line 37, column 70 (Case246_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD4_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223015049-1869936 01H04_rep_A_Sulindacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223015049-1869936 01H04_rep_A_Sulindacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007552_031618-1CRP3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115018556-1875264 12G03_rep_B_Bretylium_tosylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115018556-1875264 12G03_rep_B_Bretylium_tosylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152704222-1577030 Batch3_KP4_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122045560-1879757 15C04_rep_B_Cefdinirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122045560-1879757 15C04_rep_B_Cefdinirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sucB_P4C1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (sucB_P4C1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/633.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD4_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153441536-1868614 06G04_rep_C_Metrizamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153441536-1868614 06G04_rep_C_Metrizamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223145563-1870004 01G07_rep_B_Minaprine dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223145563-1870004 01G07_rep_B_Minaprine dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1140.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD5_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG007B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122838465-1880121 15D11_rep_D_Lamotrigineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122838465-1880121 15D11_rep_D_Lamotrigineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ5_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C6_id_MSn_negative.mzML at line 21
index 249 is out of bounds for axis 0 with size 249
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/248.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 Column1_test_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_A2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_UC_136_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malE_P5E2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (malE_P5E2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_80.mzXML at line 689
Premature end of data in tag peaks line 27086, line 27090, column 3653 (20121114_80.mzXML, line 27090)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172700254-1889915 Nb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112832204-1922178 4_C5_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112832204-1922178 4_C5_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2D07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD4_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_D3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S05_0126_190128112458.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_H2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112251060-1873610 10C07_rep_D_Glycopyrrolateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112251060-1873610 10C07_rep_D_Glycopyrrolateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_180.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_99.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fabG_#4_P5G8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (fabG_#4_P5G8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET114.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET114.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153117718-1577237 Batch3_SKMES1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121842606-1867139 04F10_rep_C_Mifepristoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121842606-1867139 04F10_rep_C_Mifepristoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D20_id_MSn_negative.mzML at line 21
index 323 is out of bounds for axis 0 with size 323
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_70.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_3610_ACN_Polar_2.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153209137-1868494 06D04_rep_B_Cyanocobalamina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153209137-1868494 06D04_rep_B_Cyanocobalamina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223016384-1869937 01E02_rep_A_Procaine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223016384-1869937 01E02_rep_A_Procaine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_P3_id_MSn_positive.mzML at line 21
index 562 is out of bounds for axis 0 with size 562
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F17_id_MSn_positive.mzML at line 21
index 430 is out of bounds for axis 0 with size 430
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101607900-1869535 07E11_rep_C_Troloxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101607900-1869535 07E11_rep_C_Troloxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201653949-1878025 09E11_rep_C_Irinotecan_hydrochloride_trihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201653949-1878025 09E11_rep_C_Irinotecan_hydrochloride_trihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Pool_4_B-A2_1_5503.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_55.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_A7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yghU_P3E8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (yghU_P3E8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dsbA_#5_P4B9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (dsbA_#5_P4B9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/201-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD5_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/001_Nitrate_Day0_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/24 Sept 2021 - Copy/convert/210924_01.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202029844-1882192 16F05_rep_D_Histamine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202029844-1882192 16F05_rep_D_Histamine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009422_IBD200_E5_A7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153409657-1577376 Batch4_NCIH2286_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M11_id.mzML at line 21
index 549 is out of bounds for axis 0 with size 549
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_17121406_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123324786-1876048 08G11_rep_B_Dimethisoquin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123324786-1876048 08G11_rep_B_Dimethisoquin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B13_id_negative.mzML at line 21
index 256 is out of bounds for axis 0 with size 256
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malP_P6B1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (malP_P6B1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_62.mzXML at line 689
Premature end of data in tag msRun line 5, line 18422, column 1 (20121114_62.mzXML, line 18422)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trpC_P3D12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (trpC_P3D12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/001_FC_1_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125252331-1862881 03F03_rep_C_Pyrantel_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125252331-1862881 03F03_rep_C_Pyrantel_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OW3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/LiLi-4d.mzXML at line 689
Premature end of data in tag peaks line 1651, line 1655, column 3578 (LiLi-4d.mzXML, line 1655)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O12_id_MSn_positive.mzML at line 21
index 703 is out of bounds for axis 0 with size 703
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202309824-1878316 10F04_rep_A_Norgestrel-(-)-Da.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202309824-1878316 10F04_rep_A_Norgestrel-(-)-Da.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2G05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J22_id.mzML at line 21
index 571 is out of bounds for axis 0 with size 571
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114218505-1922859 4_F10_STE2_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114218505-1922859 4_F10_STE2_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_112a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_5_P4A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (ctrl_5_P4A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_C7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S3cells_4_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_79.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085183/peak/Beads_Cortex_2.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000085183/peak/Beads_Cortex_2.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-183_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYD015.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082738/ccms_peak/ST000780/EX00361-lipidomics/Raw data/NEG/20150304_Pooled.mzXML at line 689
Opening and ending tag mismatch: peaks line 45452 and msRun, line 53848, column 11 (20150304_Pooled.mzXML, line 53848)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125615247-1877085 12C09_rep_D_Ethynodiol_diacetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125615247-1877085 12C09_rep_D_Ethynodiol_diacetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/10 Sept 2021/converted/210916_tanaka04.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yihX_P5E4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (yihX_P5E4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/21_D24062013T2139_1399CBU_0004_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150028380-1864137 02G05_rep_B_Loperamide hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150028380-1864137 02G05_rep_B_Loperamide hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201532875-1881963 16C01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201532875-1881963 16C01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I15_id_MSn_positive.mzML at line 21
index 491 is out of bounds for axis 0 with size 491
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201738931-1878059 09C03_rep_C_D,L-Penicillamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201738931-1878059 09C03_rep_C_D,L-Penicillamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124902554-1862697 03H07_rep_B_Dilazep_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124902554-1862697 03H07_rep_B_Dilazep_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092125510-1878687 14A04_rep_A_Penbutolol_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092125510-1878687 14A04_rep_A_Penbutolol_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223020598-1869940 01H03_rep_A_Imipramine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223020598-1869940 01H03_rep_A_Imipramine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H13_id_MSn_positive.mzML at line 21
index 562 is out of bounds for axis 0 with size 562
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHE01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R231_5h3a.mzML at line 689
Extra content at the end of the document, line 289836, column 1 (pBlichMO17R231_5h3a.mzML, line 289836)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122202533-1879815 15G03_rep_C_Bosentanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122202533-1879815 15G03_rep_C_Bosentanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123537838-1876156 08A06_rep_C_Atropine_sulfate_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123537838-1876156 08A06_rep_C_Atropine_sulfate_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122626076-1867511 05B02_rep_A_Tremorine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122626076-1867511 05B02_rep_A_Tremorine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009621_IBD200_E17_A1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000081039/ccms_peak/raw/MTBLS293/mtab_R1_Dyhram_2014_1017_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_CABIN_sample10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007515_031618-0.01Thr4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2A01Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114612579-1875068 12B07_rep_A_N-Acetyl-L-leucinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114612579-1875068 12B07_rep_A_N-Acetyl-L-leucinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_096a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132954876-1733927 1fb Wound5D 3 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_O9_id_MSn_negative.mzML at line 21
index 361 is out of bounds for axis 0 with size 361
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150711610-1924545 2_B11_RGT2_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150711610-1924545 2_B11_RGT2_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S57.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S57.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc045_pos.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc045_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112700786-1874194 11D01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112700786-1874194 11D01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122949332-1867674 05A03_rep_B_Alfuzosin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122949332-1867674 05A03_rep_B_Alfuzosin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165850189-2227555 PAT43.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151551903-1576483 Batch7_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122818969-1875805 08G07_rep_A_Racecadotrilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122818969-1875805 08G07_rep_A_Racecadotrilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152529446-1576951 Batch2_SW900_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152354126-1576874 Batch1_HX147_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B10_id.mzML at line 21
index 541 is out of bounds for axis 0 with size 541
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150830683-1924613 2_F1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150830683-1924613 2_F1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121954929-1879718 15E09_rep_B_Clarithromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121954929-1879718 15E09_rep_B_Clarithromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/001_CRa_H9M5_M470_Blank_01_low_neg.mzXML at line 689
Premature end of data in tag peaks line 28064, line 28068, column 11766 (001_CRa_H9M5_M470_Blank_01_low_neg.mzXML, line 28068)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150001231-1864117 02H06_rep_B_Paclitaxela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150001231-1864117 02H06_rep_B_Paclitaxela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007497_031618-Unst6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113944511-1922722 3_D4_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113944511-1922722 3_D4_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/3.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101332093-1869413 07B02_rep_B_Metixene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101332093-1869413 07B02_rep_B_Metixene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ7_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_AW2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_048EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/17/b67b93ad4bc186b73474f9b8d37878/input_file/QC_20170209_048EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yejE_#4_P4B5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (yejE_#4_P4B5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124641058-1862584 03B02_rep_B_Tranexamic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124641058-1862584 03B02_rep_B_Tranexamic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GC8_01_16811.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR124h1a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-094_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yfeX_#5_P4B7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (yfeX_#5_P4B7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201954015-1882164 16B11_rep_D_Estramustineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201954015-1882164 16B11_rep_D_Estramustineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_73.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_19_Blood_EtOH_control_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_19_Blood_EtOH_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417203344.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD6_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113302114-1922371 1_A2_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113302114-1922371 1_A2_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dapE_P5B12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (dapE_P5B12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1017.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/melB_P4C10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (melB_P4C10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201635385-1882010 16F03_rep_C_Indinavir_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201635385-1882010 16F03_rep_C_Indinavir_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/udp_P5B4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (udp_P5B4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_107.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/btuD_P5D11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (btuD_P5D11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180914_ES_H3K_batch2_repC_21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190128_ES_H3K_batch15_repC_222.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_18_AC+_30.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_08_005_prot_21_IMS_11Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223539469-1870182 01E10_rep_B_Amyleine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223539469-1870182 01E10_rep_B_Amyleine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222954390-1869921 01E04_rep_A_Betazole hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222954390-1869921 01E04_rep_A_Betazole hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152646452-1577015 Batch1_NCIH1395_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Positive_FGF1_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M19_id_MSn_positive.mzML at line 21
index 692 is out of bounds for axis 0 with size 692
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD3_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007516_031618-0.01Thr4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152443416-1576913 Batch1_HCC1806_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170127_058ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/fc/2d201b794d3c97f8bf116c63b0bbb6/input_file/MMW3_20170127_058ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fdnI_P3A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (fdnI_P3A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153707973-1868732 06B11_rep_C_Erlotiniba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153707973-1868732 06B11_rep_C_Erlotiniba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1080.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_207.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case56_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case56_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tyrA_P3C10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (tyrA_P3C10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151624767-1925015 4_H4_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151624767-1925015 4_H4_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K5_id_MSn_positive.mzML at line 21
index 508 is out of bounds for axis 0 with size 508
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417234025.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J22_id_MSn_positive.mzML at line 21
index 390 is out of bounds for axis 0 with size 390
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_62.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E3_id_MSn_negative.mzML at line 21
index 277 is out of bounds for axis 0 with size 277
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case201_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case201_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/14_D24062013T1817_1399CBU_0016_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHL24.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153137589-1868469 06H09_rep_B_Felodipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153137589-1868469 06H09_rep_B_Felodipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114238279-1874899 11E06_rep_D_Amiprilose_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114238279-1874899 11E06_rep_D_Amiprilose_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009552_IBD200_E12_B10.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yihT_#1_P4H5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (yihT_#1_P4H5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person1_Blood_NEG.mzXML at line 689
attributes construct error, line 38, column 73 (Person1_Blood_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1F01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124450171-1876599 09F09_rep_A_Tetrahydrozoline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124450171-1876599 09F09_rep_A_Tetrahydrozoline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150058004-1864160 02B04_rep_B_Azacyclonolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150058004-1864160 02B04_rep_B_Azacyclonolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092025246-1878641 13G09_rep_D_Benzathine_benzylpenicillinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092025246-1878641 13G09_rep_D_Benzathine_benzylpenicillinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2F02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150104340-1864165 02H11_rep_B_Gentamicine sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150104340-1864165 02H11_rep_B_Gentamicine sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_05_859_prot_38_IMS_15Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp2/20180309173106244-1989054 wound 5db.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample149_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dcuA_P3E5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (dcuA_P3E5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150449095-1864818 02D11_rep_C_Triamcinolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150449095-1864818 02D11_rep_C_Triamcinolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E11_id_MSn_positive.mzML at line 21
index 739 is out of bounds for axis 0 with size 739
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121744978-1879620 15H04_rep_B_Formoterol_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121744978-1879620 15H04_rep_B_Formoterol_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A18_id_MSn_negative.mzML at line 21
index 311 is out of bounds for axis 0 with size 311
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J16_id_MSn_negative.mzML at line 21
index 302 is out of bounds for axis 0 with size 302
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlB2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlB2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151942564-1576675 Batch1_UMUC3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085103/updates/2020-03-14_allegraaron_d321bd98/peak/mzML/JB-182_100um_ph2.mzML at line 689
Premature end of data in tag binary line 147349, line 147349, column 18824 (JB-182_100um_ph2.mzML, line 147349)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A7_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control111_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control111_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/868.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122858835-1880137 15H01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122858835-1880137 15H01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ5_1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151129208-1924767 3_F1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151129208-1924767 3_F1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113745685-1922617 3_C10_STE2_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113745685-1922617 3_C10_STE2_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/006_1022_3_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G16_id.mzML at line 21
index 570 is out of bounds for axis 0 with size 570
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2L004A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_A10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_A10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202023377-1878185 09F08_rep_D_3-alpha-Hydroxy-5-beta-androstan-17-oneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202023377-1878185 09F08_rep_D_3-alpha-Hydroxy-5-beta-androstan-17-oneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112318432-1921902 3_C1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112318432-1921902 3_C1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B4_id_MSn_negative.mzML at line 21
index 200 is out of bounds for axis 0 with size 200
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B14_id_MSn_negative.mzML at line 21
index 293 is out of bounds for axis 0 with size 293
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD6_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_A9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHK01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121635667-1867039 04G07_rep_B_Clemastine_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121635667-1867039 04G07_rep_B_Clemastine_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hB1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hB1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125610134-1877081 12C02_rep_D_Hymecromonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125610134-1877081 12C02_rep_D_Hymecromonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_ehigh (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153258270-1577318 Batch5_OVCAR5_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_sp_WTHA10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_G2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123223736-1867793 05H07_rep_B_Etoposideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123223736-1867793 05H07_rep_B_Etoposideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_58.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_sample01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_226.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180916_ES_H3K_batch2B_repB_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091937274-1878604 13G11_rep_D_Torsemidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091937274-1878604 13G11_rep_D_Torsemidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nadC_P6A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (nadC_P6A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_D7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153556112-1868673 06G09_rep_C_Neostigmine_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153556112-1868673 06G09_rep_C_Neostigmine_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121248634-1879397 14A10_rep_D_Oxyphenbutazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121248634-1879397 14A10_rep_D_Oxyphenbutazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1376.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1376.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person20_blood_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 83 (Person20_blood_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD3_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD3_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170125_067EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/92/acc28045a1791dd43e39254641bda7/input_file/SH7_20170125_067EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ3_1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125640844-1863066 03D10_rep_D_Prilocaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125640844-1863066 03D10_rep_D_Prilocaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C17_id_MSn_positive.mzML at line 21
index 698 is out of bounds for axis 0 with size 698
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112854194-1922198 4_F8_GPR1_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112854194-1922198 4_F8_GPR1_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153836129-1577597 Batch7_MIAPACA2_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151339918-1576374 Batch7_NCIH1734_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_A10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_A10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152558217-1868209 05B06_rep_D_Zaprinastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152558217-1868209 05B06_rep_D_Zaprinastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121843988-1867140 04D11_rep_C_Quinidine_hydrochloride_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121843988-1867140 04D11_rep_C_Quinidine_hydrochloride_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/-ve_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D8_id.mzML at line 21
index 517 is out of bounds for axis 0 with size 517
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112702392-1922098 4_F11_GPR1_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112702392-1922098 4_F11_GPR1_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/001_Nitrate_Day14_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170127_047ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e0/aff9dfb1070a3e49f54b6189bb2210/input_file/SH8_20170127_047ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100550029-1869043 07G07_rep_A_Pregnenolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100550029-1869043 07G07_rep_A_Pregnenolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_Batch03_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153539364-1577449 Batch5_HT29_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153303020-1577322 Batch4_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2E03Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1845.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1845.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rfbB_#4_P4E12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (rfbB_#4_P4E12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153759640-1577566 Batch6_NCIH82_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151202440-1576293 Batch5_NCIH446_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfC_P3E9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (hyfC_P3E9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122842383-1880124 15H03_rep_D_Moxifloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122842383-1880124 15H03_rep_D_Moxifloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153645938-1868714 06H10_rep_C_Raclopridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153645938-1868714 06H10_rep_C_Raclopridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K19_id_MSn_negative.mzML at line 21
index 316 is out of bounds for axis 0 with size 316
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_108.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_56.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/adp_tauC_P5C8_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024912 (adp_tauC_P5C8_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124827018-1876732 12F07_rep_C_Bephenium_hydroxynaphthoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124827018-1876732 12F07_rep_C_Bephenium_hydroxynaphthoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH1.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfF_P3D4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (hyfF_P3D4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/homL_thrB_P5C10_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 552, column 10001702 (homL_thrB_P5C10_Aquity_pos.mzXML, line 552)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM5A004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2A07P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150312741-1924342 1_D9_RGT2_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150312741-1924342 1_D9_RGT2_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/905.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4B05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223649963-1870236 01E02_rep_C_Procaine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223649963-1870236 01E02_rep_C_Procaine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F17_id_MSn_negative.mzML at line 21
index 326 is out of bounds for axis 0 with size 326
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151357717-1576389 Batch6_CALU3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD2_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224142413-1870461 01D04_rep_D_Diprophyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224142413-1870461 01D04_rep_D_Diprophyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152804179-1577080 Batch3_HT1197_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153817304-1577581 Batch6_CCRFCEM_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_sample10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Column2_test_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8F03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202510310-1878411 10H08_rep_A_Methotrimeprazine_maleat_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202510310-1878411 10H08_rep_A_Methotrimeprazine_maleat_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201950134-1882161 16G02_rep_D_Epirubicin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201950134-1882161 16G02_rep_D_Epirubicin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_15_Blood_CMC_control_NEG.mzXML at line 689
attributes construct error, line 38, column 91 (Mouse_15_Blood_CMC_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121425006-1879469 15H07_rep_A_Rosiglitazone_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121425006-1879469 15H07_rep_A_Rosiglitazone_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121909646-1879684 15C08_rep_B_Fludarabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121909646-1879684 15C08_rep_B_Fludarabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201850009-1882114 16A07_rep_D_Amlexanoxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201850009-1882114 16A07_rep_D_Amlexanoxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151412519-1924908 4_E7_SNF3_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151412519-1924908 4_E7_SNF3_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhaT_#1_P4E8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (rhaT_#1_P4E8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1D08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_15102011_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152350315-1576871 Batch1_NCIH1993_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E5_id_MSn_positive.mzML at line 21
index 753 is out of bounds for axis 0 with size 753
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S97.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S97.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088790/raw/AFN13.mzXML at line 255
Error -3 while decompressing data: invalid stored block lengths
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ycdT_P5H3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (ycdT_P5H3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B10Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/177_138.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152947725-1577168 Batch5_NCIH3255_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/628.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201559166-1881983 16E11_rep_C_Cefpodoxime_proxetila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201559166-1881983 16E11_rep_C_Cefpodoxime_proxetila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092416361-1878821 14B02_rep_A_Moricizine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092416361-1878821 14B02_rep_A_Moricizine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_E9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_ISB_male_2022_1017_Michael_neg-0.0039.mzML at line 689
Premature end of data in tag binary line 25312, line 25312, column 997932 (2_ISB_male_2022_1017_Michael_neg-0.0039.mzML, line 25312)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200912736-1881682 16H08_rep_A_Triclabendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200912736-1881682 16H08_rep_A_Triclabendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/OVA1_50EV_RA8_01_22616.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100301708-1868910 06G09_rep_D_Neostigmine_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100301708-1868910 06G09_rep_D_Neostigmine_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114902520-1875202 12E02_rep_B_Nizatidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114902520-1875202 12E02_rep_B_Nizatidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_142.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_142.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw_Baseline_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case2_pos.mzXML at line 689
attributes construct error, line 37, column 67 (Case2_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_E5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_A3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113643669-1874613 11G03_rep_C_Raloxifene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113643669-1874613 11G03_rep_C_Raloxifene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_G12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_134.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123030535-1867704 05G01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123030535-1867704 05G01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120858603-1879224 14E03_rep_D_(-)-Eseroline_fumarate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120858603-1879224 14E03_rep_D_(-)-Eseroline_fumarate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ7_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150712526-1864929 02F01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150712526-1864929 02F01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/garK_P4F8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (garK_P4F8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_95.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150553854-1924478 1_G11_RGT2_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150553854-1924478 1_G11_RGT2_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ycjG_P3D10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (ycjG_P3D10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121807973-1867112 04B10_rep_C_Ethacrynic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121807973-1867112 04B10_rep_C_Ethacrynic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153558676-1868675 06A04_rep_C_Thyroxine_(L)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153558676-1868675 06A04_rep_C_Thyroxine_(L)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dppF_P5D1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (dppF_P5D1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125538525-1863016 03C08_rep_D_Catharanthinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125538525-1863016 03C08_rep_D_Catharanthinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_93.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150418042026.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tauA_P3A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (tauA_P3A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112502397-1921993 3_D11_GPR1_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112502397-1921993 3_D11_GPR1_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfH_#3_P4C6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (hyfH_#3_P4C6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-025.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-025.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N12_id_MSn_negative.mzML at line 21
index 370 is out of bounds for axis 0 with size 370
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152743905-1577063 Batch2_OVCAR4_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113912166-1922693 3_B8_STE2_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113912166-1922693 3_B8_STE2_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYD005.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K8_id_negative.mzML at line 21
index 252 is out of bounds for axis 0 with size 252
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222849605-1869872 01H05_rep_A_Amitryptiline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222849605-1869872 01H05_rep_A_Amitryptiline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/19072021_Batch07_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike3_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0037_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0037_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET100.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET100.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/422.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113308946-1922377 1_D8_IZH2_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113308946-1922377 1_D8_IZH2_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085760/raw/mzXML/Solv9.mzXML at line 689
Premature end of data in tag peaks line 22427, line 22431, column 3743 (Solv9.mzXML, line 22431)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124531870-1876630 09A09_rep_A_Nilvadipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124531870-1876630 09A09_rep_A_Nilvadipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1877.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1877.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114743005-1875138 12F06_rep_B_(-)-MK_801_hydrogen_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114743005-1875138 12F06_rep_B_(-)-MK_801_hydrogen_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223624971-1870217 01D07_rep_C_Troleandomycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223624971-1870217 01D07_rep_C_Troleandomycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112123856-1873541 10H05_rep_C_Eucatropine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112123856-1873541 10H05_rep_C_Eucatropine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153839639-1577600 Batch6_CCRFCEM_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/821.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Magnolol_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_CABIN_sample03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/383.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dacB_P4F9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (dacB_P4F9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_C2_id_negative.mzML at line 21
index 254 is out of bounds for axis 0 with size 254
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124337192-1876539 09A01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124337192-1876539 09A01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/moeA_P5A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (moeA_P5A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GB6_01_12084.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample108_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GG6_01_16866.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165752292-2227502 PAT40.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P17_id_negative.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201811054-1882083 16D01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201811054-1882083 16D01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/952.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113749112-1922620 3_H1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113749112-1922620 3_H1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E14_id_MSn_positive.mzML at line 21
index 402 is out of bounds for axis 0 with size 402
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112451647-1874092 10H06_rep_D_Isocarboxazida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112451647-1874092 10H06_rep_D_Isocarboxazida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/allA_P3A4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (allA_P3A4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control188_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control188_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH62.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114700402-1875105 12F11_rep_B_Allopurinolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114700402-1875105 12F11_rep_B_Allopurinolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_G8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111409088-1871470 10G01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111409088-1871470 10G01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C13_id_MSn_positive.mzML at line 21
index 600 is out of bounds for axis 0 with size 600
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Blank_pesticide_170404023210.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample069_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiK_#1_P4C12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (thiK_#1_P4C12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_17_40x_2022_1006_Michael_pos-0.0037.mzML at line 689
Premature end of data in tag binary line 3725, line 3725, column 2156574 (1_17_40x_2022_1006_Michael_pos-0.0037.mzML, line 3725)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153548511-1868667 06C02_rep_C_Suloctidilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153548511-1868667 06C02_rep_C_Suloctidilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201521680-1877956 09D06_rep_C_Oxacillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201521680-1877956 09D06_rep_C_Oxacillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHD06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_72_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_72_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123436008-1876106 08C06_rep_B_Voriconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123436008-1876106 08C06_rep_B_Voriconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113746847-1922618 3_G3_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113746847-1922618 3_G3_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124716533-1862612 03F08_rep_B_Mebendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124716533-1862612 03F08_rep_B_Mebendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/patA_#2_P4E9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (patA_#2_P4E9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N7_id_MSn_negative.mzML at line 21
index 320 is out of bounds for axis 0 with size 320
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrdF_P3F5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (nrdF_P3F5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_high (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130107944-1863288 04C02_rep_A_Ethisteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130107944-1863288 04C02_rep_A_Ethisteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_AW5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_76.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person04_RBC_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Person04_RBC_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-cc5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GD12_01_17189.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145844298-1864055 02H04_rep_A_Didanosinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145844298-1864055 02H04_rep_A_Didanosinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GC12_01_17173.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222905736-1869884 01G08_rep_A_Miconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222905736-1869884 01G08_rep_A_Miconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_115.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_16061440_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124515279-1862399 03D10_rep_A_Prilocaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124515279-1862399 03D10_rep_A_Prilocaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153944806-1577655 Batch6_NCIH146_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2L001B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130407289-1877447 13C03_rep_B_Nandrolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130407289-1877447 13C03_rep_B_Nandrolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132929418-1733907 1pool Wound5D 2 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153300465-1868534 06H08_rep_B_Progesteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153300465-1868534 06H08_rep_B_Progesteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET87.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET87.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GH11_01_11572.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152244892-1576819 Batch1_LK2_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD5_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201842415-1882108 16F08_rep_D_Lofepramineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201842415-1882108 16F08_rep_D_Lofepramineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113801665-1922631 3_A2_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113801665-1922631 3_A2_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_48.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V5_EDTAk2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113921648-1874740 11D05_rep_D_Novobiocin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113921648-1874740 11D05_rep_D_Novobiocin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124840093-1862679 03C10_rep_B_Aminopurine,_6-benzylb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124840093-1862679 03C10_rep_B_Aminopurine,_6-benzylb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/112.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw5_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125957548-1863231 04D02_rep_A_Vincamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125957548-1863231 04D02_rep_A_Vincamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD1_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G3_id_MSn_negative.mzML at line 21
index 341 is out of bounds for axis 0 with size 341
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122312894-1879869 15A11_rep_C_Estradiol_Valerateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122312894-1879869 15A11_rep_C_Estradiol_Valerateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.co_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine73.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine73.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_02_leg_muscle_control_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_02_leg_muscle_control_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152613059-1576987 Batch2_OVCAR3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151339918-1576374 Batch7_NCIH1734_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_17111316_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125120792-1862807 03B08_rep_C_Sulfamethoxazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125120792-1862807 03B08_rep_C_Sulfamethoxazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GD8_01_17060.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122624841-1867510 05B02_rep_A_Tremorine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122624841-1867510 05B02_rep_A_Tremorine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200933105-1877703 09B06_rep_B_Halcinonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200933105-1877703 09B06_rep_B_Halcinonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121430888-1866942 04D03_rep_B_Indomethacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121430888-1866942 04D03_rep_B_Indomethacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/005_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152926539-1577150 Batch3_HT1376_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_24_male_2022_1017_Michael_neg-0.0048.mzML at line 689
Premature end of data in tag binary line 21105, line 21105, column 173410 (4_24_male_2022_1017_Michael_neg-0.0048.mzML, line 21105)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/astA_#1_P4F9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (astA_#1_P4F9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GD3_01_12115.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trkH_P3D12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (trkH_P3D12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C5_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081039/ccms_peak/raw/MTBLS293/mtab_R1_Dyhram_2014_1017_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2F08P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_69.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/22_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HaCaT_2_RESV_0uM_NEG.mzXML at line 689
attributes construct error, line 38, column 81 (HaCaT_2_RESV_0uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_6_P3A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (ctrl_6_P3A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080705/ccms_peak/RAW/SILAC 48h.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122341753-1879891 15H02_rep_C_Imatinibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122341753-1879891 15H02_rep_C_Imatinibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113910597-1874731 11A02_rep_D_Carbinoxamine_maleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113910597-1874731 11A02_rep_D_Carbinoxamine_maleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007489_031618-Unst2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G02P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/362.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/869.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_67.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113026668-1874353 11D09_rep_B_Iocetamic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113026668-1874353 11D09_rep_B_Iocetamic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150147145-1864679 02F03_rep_B_Loxapine succinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150147145-1864679 02F03_rep_B_Loxapine succinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_253.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007694_032218-5CRP2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153616428-1577480 Batch5_HT29_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A5_id_MSn_negative_20240503175658.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100149167-1868853 06H08_rep_D_Progesteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100149167-1868853 06H08_rep_D_Progesteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200635086-1881566 16A03_rep_A_Silodosinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200635086-1881566 16A03_rep_A_Silodosinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113901999-1922684 3_A9_STE2_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113901999-1922684 3_A9_STE2_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_68.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD1_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111924528-1921700 2_G1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111924528-1921700 2_G1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_dilute_190131213906.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_D9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121339287-1879434 15F03_rep_A_Atorvastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121339287-1879434 15F03_rep_A_Atorvastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114558388-1875057 12G01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114558388-1875057 12G01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fhuC_P5D7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (fhuC_P5D7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogonin_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E10_id_MSn_positive.mzML at line 21
index 709 is out of bounds for axis 0 with size 709
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082738/ccms_peak/ST000780/EX00361-lipidomics/Raw data/POS/20150304_Authentic.mzXML at line 689
Specification mandates value for attribute precision, line 19704, column 27 (20150304_Authentic.mzXML, line 19704)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_76.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100920389-1869212 07E09_rep_A_Triflusalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100920389-1869212 07E09_rep_A_Triflusalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpB_P4A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (atpB_P4A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223904122-1870340 01G10_rep_C_Acebutolol hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223904122-1870340 01G10_rep_C_Acebutolol hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092014962-1878633 13G02_rep_D_Isradipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092014962-1878633 13G02_rep_D_Isradipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152246201-1576820 Batch2_NCIH441_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009494_IBD200_E9_B4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125254764-1862883 03D08_rep_C_Metaraminol_bitartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125254764-1862883 03D08_rep_C_Metaraminol_bitartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/379.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_6_Blood_HO_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 86 (Mouse_6_Blood_HO_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165842539-2227548 Healthy8.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_60.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_G6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_MSMS_2022_1003_Michael_leming_liver_neg-0008.mzML at line 689
Premature end of data in tag binary line 10641, line 10641, column 5587 (pooled_MSMS_2022_1003_Michael_leming_liver_neg-0008.mzML, line 10641)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113340859-1922405 2_F5_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113340859-1922405 2_F5_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw2_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHF01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009393_IBD200_E3_B8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101347042-1869425 07G01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101347042-1869425 07G01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F22_id_MSn_negative.mzML at line 21
index 322 is out of bounds for axis 0 with size 322
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007531_031618-1Thr3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ2_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1K020.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GC11_01_17172.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/302.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152543970-1576963 Batch2_OVCAR3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112212119-1921844 3_H11_GPR1_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112212119-1921844 3_H11_GPR1_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_19080521_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152700659-1577027 Batch1_NCIH1395_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121921739-1867170 04G07_rep_C_Clemastine_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121921739-1867170 04G07_rep_C_Clemastine_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153103843-1577226 Batch3_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8E07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-031.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-031.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_G10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_244.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_125.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_PDK_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_66_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_66_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7D09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190357446-1889815 Nb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200602892-1881542 16G10_rep_A_Oxymetholoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200602892-1881542 16G10_rep_A_Oxymetholoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152843060-1577113 Batch3_NCIH322M_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113622858-1874596 11E10_rep_C_Clinafloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113622858-1874596 11E10_rep_C_Clinafloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210112_AD_16.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120950093-1879263 14A09_rep_D_Piperacetazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120950093-1879263 14A09_rep_D_Piperacetazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_H8_01_12187.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220222_LKM_Celegans_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_A12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgpA_P3H7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (pgpA_P3H7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike6_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113103343-1874379 11B10_rep_B_Moxalactam_disodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113103343-1874379 11B10_rep_B_Moxalactam_disodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153205618-1868491 06C10_rep_B_Valacyclovir_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153205618-1868491 06C10_rep_B_Valacyclovir_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L20_id_MSn_positive.mzML at line 21
index 547 is out of bounds for axis 0 with size 547
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_07_239_prot_04_IMS_8Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/livG_P4B12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (livG_P4B12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/Blank6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222726224-1869809 01B10_rep_A_Captoprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222726224-1869809 01B10_rep_A_Captoprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/128-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B3_id_MSn_negative_20240503191234.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093247941-1879219 14F11_rep_C_Toltrazurilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093247941-1879219 14F11_rep_C_Toltrazurilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082913/raw/15NEGMSMS5_10_15eV.mzML at line 689
Premature end of data in tag binary line 3882, line 3882, column 618480 (15NEGMSMS5_10_15eV.mzML, line 3882)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person29_plasma_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person29_plasma_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/adeD_P3H7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (adeD_P3H7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/CPV_B_rep_3_B-B9_1_5651.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201933267-1882148 16D09_rep_D_Diatrizoic_acid_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201933267-1882148 16D09_rep_D_Diatrizoic_acid_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_G6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202031170-1882193 16C10_rep_D_Ethoxzolamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202031170-1882193 16C10_rep_D_Ethoxzolamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122713302-1867549 05E01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122713302-1867549 05E01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H12_id_negative.mzML at line 21
index 260 is out of bounds for axis 0 with size 260
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121920522-1879692 15B06_rep_B_Amcinonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121920522-1879692 15B06_rep_B_Amcinonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P4_id.mzML at line 21
index 547 is out of bounds for axis 0 with size 547
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P4_id_MSn_positive.mzML at line 21
index 379 is out of bounds for axis 0 with size 379
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153707973-1577523 Batch5_HCT15_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rihC_P3B10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (rihC_P3B10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/proV_#4_P4A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (proV_#4_P4A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_34_RIN_15.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_34_RIN_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C5_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1K002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007607_032118-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD5_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113303263-1922372 1_F4_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113303263-1922372 1_F4_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_F3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/aconC_acnB_P3D11_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (aconC_acnB_P3D11_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124957947-1862741 03E01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124957947-1862741 03E01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_18_40x_2022_1006_Michael_pos-0.0038.mzML at line 689
Premature end of data in tag binary line 1641, line 1641, column 339410 (1_18_40x_2022_1006_Michael_pos-0.0038.mzML, line 1641)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-2d.mzXML at line 689
Premature end of data in tag peaks line 8301, line 8305, column 3576 (YnYn-2d.mzXML, line 8305)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/963.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_B6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1375.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1375.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30142 - GI-16-575.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30154 - GI-17-442.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M20_id_MSn_positive_20240503131647.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100359129-1868955 06C05_rep_D_Cephalosporanic_acid,_7-aminoa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100359129-1868955 06C05_rep_D_Cephalosporanic_acid,_7-aminoa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD6_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124730101-1876722 09D01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124730101-1876722 09D01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1203.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1203.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N10_id_MSn_negative.mzML at line 21
index 356 is out of bounds for axis 0 with size 356
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125613928-1877084 12C08_rep_D_S-(+)-ibuprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125613928-1877084 12C08_rep_D_S-(+)-ibuprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201525219-1881958 16G04_rep_C_Tolterodine_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201525219-1881958 16G04_rep_C_Tolterodine_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009566_IBD200_E13_B10.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1199.mzML at line 689
Invalid character: Char 0x0 out of allowed range
, line 136415, column 1097 (04_05_2012_1199.mzML, line 136415)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125639550-1863065 03H04_rep_D_Hyoscyamine_(L)_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125639550-1863065 03H04_rep_D_Hyoscyamine_(L)_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100250569-1868901 06H02_rep_D_Vatalaniba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100250569-1868901 06H02_rep_D_Vatalaniba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C10_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_C2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ1_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153434270-1577396 Batch4_SW156_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_55.mzXML at line 689
Premature end of data in tag peaks line 18671, line 18675, column 15939 (20121114_55.mzXML, line 18675)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/130_109_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150926338-1865033 02B10_rep_D_Mianserine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150926338-1865033 02B10_rep_D_Mianserine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/psuT_P4H8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (psuT_P4H8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112917062-1874302 11H10_rep_A_Rabeprazole_Sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112917062-1874302 11H10_rep_A_Rabeprazole_Sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_H2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201510430-1877949 09G10_rep_C_Trioxsalenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201510430-1877949 09G10_rep_C_Trioxsalenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/924.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD4_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092258983-1878761 14F03_rep_A_Ranolazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092258983-1878761 14F03_rep_A_Ranolazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/betT_#2_P3H11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (betT_#2_P3H11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120946317-1879260 14G06_rep_D_Verteporfina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120946317-1879260 14G06_rep_D_Verteporfina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130109161-1863289 04C02_rep_A_Ethisteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130109161-1863289 04C02_rep_A_Ethisteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1448.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1448.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hA3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hA3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151432633-1576418 Batch6_HCC1937_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5D12_160602051706.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202230619-1878285 10H06_rep_A_Isocarboxazidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202230619-1878285 10H06_rep_A_Isocarboxazidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009558_IBD200_E13_B2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_107.mzXML at line 689
Premature end of data in tag peaks line 21884, line 21888, column 3655 (20121114_107.mzXML, line 21888)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-blank2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090833/peak/mzML/208_murA.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000090833/peak/mzML/208_murA.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wcaG_P3H12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (wcaG_P3H12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152152041-1868022 05B08_rep_C_Procainamide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152152041-1868022 05B08_rep_C_Procainamide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150615702-1924497 2_E5_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150615702-1924497 2_E5_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD4_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 2-30192 - GI-17-182.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix12_160602115114.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222743747-1869822 01E07_rep_A_Naphazoline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222743747-1869822 01E07_rep_A_Naphazoline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121733906-1867085 04B11_rep_C_Praziquantelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121733906-1867085 04B11_rep_C_Praziquantelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121307857-1866880 04F08_rep_B_Benzydamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121307857-1866880 04F08_rep_B_Benzydamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153600895-1577467 Batch5_HCT116_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123139025-1867757 05B09_rep_B_N6-methyladenosineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123139025-1867757 05B09_rep_B_N6-methyladenosineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130723988-1877602 13B03_rep_C_THIP_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130723988-1877602 13B03_rep_C_THIP_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1027.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N13_id_MSn_negative.mzML at line 21
index 313 is out of bounds for axis 0 with size 313
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample018_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152254321-1868069 05B07_rep_D_Chlormezanoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152254321-1868069 05B07_rep_D_Chlormezanoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_98.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_98.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125027785-1876822 12C07_rep_C_Fluspirilena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125027785-1876822 12C07_rep_C_Fluspirilena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124657590-1876696 09G05_rep_A_Bromopridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124657590-1876696 09G05_rep_A_Bromopridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074321.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170209_013ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ef/499a943ee35b1b062633bfd79b3f39/input_file/SH7_20170209_013ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_41_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_41_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_11_B-A2_1_5873.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHK02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075932.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc2 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_56.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151839091-1576622 Batch5_HCC1187_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_102.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151221341-1924812 3_A9_SNF3_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151221341-1924812 3_A9_SNF3_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113536035-1922505 2_A2_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113536035-1922505 2_A2_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114624443-1875077 12D07_rep_A_Nitrendipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114624443-1875077 12D07_rep_A_Nitrendipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hA3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hA3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170207_041EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e0/9f6fae50d886be3fa493cad32c8245/input_file/SH10_20170207_041EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P10_id_MSn_negative.mzML at line 21
index 349 is out of bounds for axis 0 with size 349
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ispF_#3_P3E11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (ispF_#3_P3E11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES343.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124211623-1862254 03B03_rep_A_Etofyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124211623-1862254 03B03_rep_A_Etofyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152741594-1868289 06A10_rep_A_Amiodarone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152741594-1868289 06A10_rep_A_Amiodarone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151605147-1576494 Batch7_NCIH226_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151254273-1576336 Batch5_PC14PE6_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122914801-1875849 08A11_rep_A_Nicotinamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122914801-1875849 08A11_rep_A_Nicotinamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3B01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125345626-1862924 03H02_rep_D_Etodolaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125345626-1862924 03H02_rep_D_Etodolaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_F12_01_12172.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Blank_5_B-A1_1_5685 (2)..mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S1cells_5_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lsrK_P4G8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (lsrK_P4G8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.gha_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101442377-1869469 07E02_rep_C_Lofexidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101442377-1869469 07E02_rep_C_Lofexidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH25.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/13_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_E9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130159979-1877348 13A11_rep_B_Indatraline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130159979-1877348 13A11_rep_B_Indatraline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100256689-1868906 06E10_rep_D_Pilocarpine_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100256689-1868906 06E10_rep_D_Pilocarpine_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person01_blood_youth_POS.mzXML at line 689
attributes construct error, line 41, column 97 (Person01_blood_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_dilute.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122736592-1867568 05C08_rep_A_Thioguanosinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122736592-1867568 05C08_rep_A_Thioguanosinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_dilute.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_46_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_46_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person21_blood_youth_POS.mzXML at line 689
attributes construct error, line 41, column 83 (Person21_blood_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/9_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD3_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124702773-1876700 09A03_rep_A_Gefitiniba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124702773-1876700 09A03_rep_A_Gefitiniba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125502287-1877029 12D07_rep_D_Nitrendipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125502287-1877029 12D07_rep_D_Nitrendipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112616240-1874159 11A05_rep_A_Spectinomycin_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112616240-1874159 11A05_rep_A_Spectinomycin_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/XYT-30d.mzXML at line 689
Premature end of data in tag peaks line 4083, line 4087, column 3574 (XYT-30d.mzXML, line 4087)
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/19_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153320820-1868550 06F05_rep_B_Linezolida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153320820-1868550 06F05_rep_B_Linezolida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8B03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111557222-1921522 1_G8_GAP1_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111557222-1921522 1_G8_GAP1_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120952789-1879265 14E05_rep_D_Levalbuterol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120952789-1879265 14E05_rep_D_Levalbuterol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201835850-1878102 09A02_rep_D_Sulmazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201835850-1878102 09A02_rep_D_Sulmazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P8_id_MSn_negative.mzML at line 21
index 349 is out of bounds for axis 0 with size 349
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/030_CRa_H9M5_M470_C14_K1_low_pos.mzXML at line 689
Premature end of data in tag peaks line 13814, line 13818, column 32247 (030_CRa_H9M5_M470_C14_K1_low_pos.mzXML, line 13818)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2G01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_14b.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P21_id_negative.mzML at line 21
index 262 is out of bounds for axis 0 with size 262
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122617920-1880011 15F09_rep_D_Telmisartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122617920-1880011 15F09_rep_D_Telmisartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Negative_Veh_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172656365-1889912 stda.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L2_id.mzML at line 21
index 530 is out of bounds for axis 0 with size 530
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G12_id_MSn_positive.mzML at line 21
index 680 is out of bounds for axis 0 with size 680
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argF_P3D8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (argF_P3D8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ1_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/amiC_P4E6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (amiC_P4E6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_E9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132947289-1733921 1fb Wound5D 1 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210108_AD_14.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151335084-1576370 Batch6_CORL279_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114212039-1922853 4_E11_STE2_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114212039-1922853 4_E11_STE2_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200807855-1881634 16C06_rep_A_Nateglinideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200807855-1881634 16C06_rep_A_Nateglinideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-6-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112203561-1873572 10H08_rep_D_Methotrimeprazine_maleat_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112203561-1873572 10H08_rep_D_Methotrimeprazine_maleat_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNS580_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_5_Blood_HO_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 86 (Mouse_5_Blood_HO_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Kocuria_rosea_MSL_359.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113612553-1874588 11C06_rep_C_Trichlormethiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113612553-1874588 11C06_rep_C_Trichlormethiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD1_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_F1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tyrB_#2_P5D2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (tyrB_#2_P5D2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/250.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114310395-1874925 12F11_rep_A_Allopurinolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114310395-1874925 12F11_rep_A_Allopurinolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MSB01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113344923-1922409 2_B4_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113344923-1922409 2_B4_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8G02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ7_8 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223927911-1870358 01F10_rep_C_Pheniramine maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223927911-1870358 01F10_rep_C_Pheniramine maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113240281-1922352 1_G4_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113240281-1922352 1_G4_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_3152_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122421103-1867410 04G02_rep_D_Lisinoprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122421103-1867410 04G02_rep_D_Lisinoprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084053/ccms_peak/BRANCO DESLIGA_POS_REP_1-1_01_7576.mzML at line 689
Premature end of data in tag binary line 1087813, line 1087813, column 5243 (BRANCO DESLIGA_POS_REP_1-1_01_7576.mzML, line 1087813)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K20_id_MSn_negative.mzML at line 21
index 329 is out of bounds for axis 0 with size 329
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092443406-1878842 14C04_rep_B_Naftifine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092443406-1878842 14C04_rep_B_Naftifine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_03_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_03_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/126_107_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122520366-1867458 05E07_rep_A_Ambroxol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122520366-1867458 05E07_rep_A_Ambroxol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sufS_P3D3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (sufS_P3D3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124336985-1862322 03G03_rep_A_Antimycin_Ab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124336985-1862322 03G03_rep_A_Antimycin_Ab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114846122-1875189 12E06_rep_B_Thonzonium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114846122-1875189 12E06_rep_B_Thonzonium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152516819-1868177 05B02_rep_D_Tremorine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152516819-1868177 05B02_rep_D_Tremorine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBmegR13h3b.mzML at line 689
Unescaped '<' not allowed in attributes values, line 187895, column 483 (pBmegR13h3b.mzML, line 187895)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_19090114_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GE1_01_17192.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112016338-1873007 10E09_rep_C_Vidarabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112016338-1873007 10E09_rep_C_Vidarabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/916.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_80.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_012712_Pseudomonas_CH36.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153929472-1577642 Batch7_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_C3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095859/peak/Blanc_CTT-3_5mg.ml_(01-12-22)_BB4_1_6513.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121814423-1867117 04A10_rep_C_Bupropion_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121814423-1867117 04A10_rep_C_Bupropion_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD1_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153150420-1868479 06F03_rep_B_Stanozololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153150420-1868479 06F03_rep_B_Stanozololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223233506-1870040 01A09_rep_B_Amprolium hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223233506-1870040 01A09_rep_B_Amprolium hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_48_RIN_25.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_48_RIN_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000089829/raw/1-19lcmsms-POS.mzML at line 689
Specification mandates value for attribute VIb5cmm3NInn5fxydKH3xt6XtBm478hTE4zQhNSCmxN, line 1, column 91459017 (1-19lcmsms-POS.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_C3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007693_032218-5CRP2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122354112-1867388 04B11_rep_D_Praziquantela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122354112-1867388 04B11_rep_D_Praziquantela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088138/raw/210916_tanaka06.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_med.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_395.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223309255-1870067 01H02_rep_B_Todralazine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223309255-1870067 01H02_rep_B_Todralazine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094943/raw/MS2/Moustafa_A_1st.mzML at line 689
Premature end of data in tag indexedmzML line 2, line 23582, column 1 (Moustafa_A_1st.mzML, line 23582)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H6_id_MSn_negative.mzML at line 21
index 306 is out of bounds for axis 0 with size 306
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI6_4_6_1_875.mzML at line 689
Specification mandates value for attribute unitAc, line 10465775, column 111 (50130_microPOTS_Rat_Brain_ROI6_4_6_1_875.mzML, line 10465775)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D17_id_MSn_negative.mzML at line 21
index 339 is out of bounds for axis 0 with size 339
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GE7_01_17075.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K7_id_MSn_negative.mzML at line 21
index 363 is out of bounds for axis 0 with size 363
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151645281-1576528 Batch7_CAL51_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/blank_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170127_064ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/f5/dd561871dcdb4c8ec98de0a180f461/input_file/SH10_20170127_064ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F8_id_negative.mzML at line 21
index 238 is out of bounds for axis 0 with size 238
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1511.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1511.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124359466-1862340 03A11_rep_A_Phenelzine_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124359466-1862340 03A11_rep_A_Phenelzine_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E15_id_MSn_positive.mzML at line 21
index 411 is out of bounds for axis 0 with size 411
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine1cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine1cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100528164-1869026 06A09_rep_D_Butoconazole_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100528164-1869026 06A09_rep_D_Butoconazole_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_203.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIAJ09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/586.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151955449-1576685 Batch1A_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N5_id_MSn_positive.mzML at line 21
index 676 is out of bounds for axis 0 with size 676
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P17_id.mzML at line 21
index 575 is out of bounds for axis 0 with size 575
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C2_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/842.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/malcoa_acpP_P4E2_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (malcoa_acpP_P4E2_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130813590-1877642 13F08_rep_C_Etilefrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130813590-1877642 13F08_rep_C_Etilefrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.liv_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089829/ccms_peak/1-19lcmsms-POS.mzML at line 689
Specification mandates value for attribute VIb5cmm3NInn5fxydKH3xt6XtBm478hTE4zQhNSCmxN, line 1, column 91459017 (1-19lcmsms-POS.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153832569-1577594 Batch6_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_69.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151224744-1924815 3_B3_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151224744-1924815 3_B3_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GG8_01_11727.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6C02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I3_id_MSn_negative.mzML at line 21
index 323 is out of bounds for axis 0 with size 323
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_C9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113327377-1922393 1_H4_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113327377-1922393 1_H4_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_4_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_A8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_G8_id_negative.mzML at line 21
index 199 is out of bounds for axis 0 with size 199
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S77.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S77.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_F5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNH287_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ6_7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152947725-1577168 Batch5_NCIH3255_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_74.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151205982-1576296 Batch5_NCIH345_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111541418-1871541 10B11_rep_B_Ebselena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111541418-1871541 10B11_rep_B_Ebselena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092442222-1878841 14G09_rep_B_Mephenytoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092442222-1878841 14G09_rep_B_Mephenytoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091760/raw/TC11_pellet.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151754472-1576585 Batch4_DMS53_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_SERUM_V3_SSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_77.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/queD_P3C5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (queD_P3C5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_plasma_4h_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer4_plasma_4h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR23h1b.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00077440.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125901218-1877213 13G05_rep_A_Nifurtimoxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125901218-1877213 13G05_rep_A_Nifurtimoxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_G3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/965.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/979.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/291.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150753622-1864961 02B08_rep_D_Disulfiramb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150753622-1864961 02B08_rep_D_Disulfiramb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112014628-1921743 2_E3_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112014628-1921743 2_E3_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpBud3_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Seco_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223431990-1870130 01G11_rep_B_Tolnaftateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223431990-1870130 01G11_rep_B_Tolnaftateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114718420-1875119 12C07_rep_B_Fluspirilenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114718420-1875119 12C07_rep_B_Fluspirilenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113733857-1922607 3_A3_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113733857-1922607 3_A3_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlA1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraControlA1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121327657-1866895 04B05_rep_B_Nortriptyline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121327657-1866895 04B05_rep_B_Nortriptyline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113753934-1874669 11C09_rep_C_Viloxazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113753934-1874669 11C09_rep_C_Viloxazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/QC_6_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100502443-1869005 06F05_rep_D_Linezolida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100502443-1869005 06F05_rep_D_Linezolida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/669.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152419570-1576894 Batch2_NCIH226_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_75.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150442627-1864813 02H06_rep_C_Paclitaxelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150442627-1864813 02H06_rep_C_Paclitaxelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113300931-1922370 1_A2_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113300931-1922370 1_A2_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152031065-1576713 Batch1_UMUC3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/482.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-033_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122422619-1879922 15D02_rep_C_5-fluorouracila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122422619-1879922 15D02_rep_C_5-fluorouracila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I19_id_MSn_positive.mzML at line 21
index 750 is out of bounds for axis 0 with size 750
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1449.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1449.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121617508-1879553 15A08_rep_A_Valproic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121617508-1879553 15A08_rep_A_Valproic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190124132103.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151533902-1576468 Batch6_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoB_#1_P5A8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (nuoB_#1_P5A8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165718319-2227471 PAT47.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170209_038ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/7f/db0baf7a9fdfc5dd1ec3e88b6a7c90/input_file/SH9_20170209_038ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111437239-1871492 10H02_rep_B_(R)_-Naproxen_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111437239-1871492 10H02_rep_B_(R)_-Naproxen_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121836013-1867134 04F02_rep_C_Dantrolene_sodium_salt_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121836013-1867134 04F02_rep_C_Dantrolene_sodium_salt_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1420.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1420.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201447293-1877933 09H05_rep_C_Isosorbide_dinitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201447293-1877933 09H05_rep_C_Isosorbide_dinitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A18_id_MSn_positive.mzML at line 21
index 684 is out of bounds for axis 0 with size 684
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H8_id_MSn_positive.mzML at line 21
index 404 is out of bounds for axis 0 with size 404
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125946739-1863222 04A07_rep_A_Pinacidila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125946739-1863222 04A07_rep_A_Pinacidila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/016_1000uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153325281-1577340 Batch4_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yhdE_P5H1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (yhdE_P5H1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_B10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_B10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123501824-1876127 08C07_rep_B_Alfacalcidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123501824-1876127 08C07_rep_B_Alfacalcidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_61.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/111-4_idMsMs_25min_40eV_GE4_01_4252.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152010667-1576697 Batch1_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ5_1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/129-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/075_73.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202333556-1878335 10F06_rep_A_Sulfamethazine_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202333556-1878335 10F06_rep_A_Sulfamethazine_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/1.6_DMSO.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075102.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Column2_test_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114423653-1874985 12H02_rep_A_Crotamitonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114423653-1874985 12H02_rep_A_Crotamitonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4E08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nikD_P4C6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (nikD_P4C6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170125_035EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/9b/6bbbafac16ec286cab68c2dc037817/input_file/SH10_20170125_035EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151506399-1576446 Batch6_CALU3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_120_3C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/472-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD4_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD4_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075259.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR37_5h1a.mzML at line 689
Opening and ending tag mismatch: binary line 22960 and activation, line 22961, column 28 (pMIBSDR37_5h1a.mzML, line 22961)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlA3b.mzXML at line 689
expected '>', line 718, column 10 (ExtraControlA3b.mzXML, line 718)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Magnolol_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124942896-1862729 03E11_rep_C_Fenbendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124942896-1862729 03E11_rep_C_Fenbendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD1_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I17_id.mzML at line 21
index 525 is out of bounds for axis 0 with size 525
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122407622-1867399 04D08_rep_D_Labetalol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122407622-1867399 04D08_rep_D_Labetalol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hD3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hD3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1149.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112110994-1873050 10A03_rep_C_Isopyrin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112110994-1873050 10A03_rep_C_Isopyrin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114731512-1875129 12H10_rep_B_Proparacaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114731512-1875129 12H10_rep_B_Proparacaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/139-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000088606/peak/210116_AR_10_43_F09_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/003_Ammonia_Day0_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223031325-1869948 01B07_rep_A_Sulfathiazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223031325-1869948 01B07_rep_A_Sulfathiazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150501693-1924433 1_D3_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150501693-1924433 1_D3_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C7_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/araG_P4A12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (araG_P4A12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/10 Sept 2021/converted/210916_tanaka05.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112522960-1922011 3_D9_GPR1_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112522960-1922011 3_D9_GPR1_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224157443-1870473 01C04_rep_D_Sulfadiazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224157443-1870473 01C04_rep_D_Sulfadiazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/798.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145945356-1864104 02C02_rep_B_R(-) Apomorphine hydrochloride hemihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145945356-1864104 02C02_rep_B_R(-) Apomorphine hydrochloride hemihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GF7_01_17212.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/479-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130102941-1863284 04H03_rep_A_Flunarizine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130102941-1863284 04H03_rep_A_Flunarizine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152823128-1577096 Batch3_RERFLCA1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170125_055EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/9d/fa13402b8830c52f4a7b8bc51b2e3b/input_file/MMW3_20170125_055EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiP_#1_P4H2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (thiP_#1_P4H2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151127950-1576265 Batch5_PC9_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIXX02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151055694-1924738 3_C2_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151055694-1924738 3_C2_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/3psme_aroC_P6C12_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 634, column 10024299 (3psme_aroC_P6C12_Aquity_neg.mzXML, line 634)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152542552-1868197 05D09_rep_D_Pemirolast_potassiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152542552-1868197 05D09_rep_D_Pemirolast_potassiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152213482-1576794 Batch1_LK2_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122106827-1867253 04D01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122106827-1867253 04D01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114358191-1874964 12C06_rep_A_Urapidil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114358191-1874964 12C06_rep_A_Urapidil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD1_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/640.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_8_Dorsal_skin_Ma_control_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_8_Dorsal_skin_Ma_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170209_029ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/71/8526b201a1171fb6e20b0635d630c6/input_file/MMW4_20170209_029ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111528514-1871531 10F03_rep_B_Leflunomidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111528514-1871531 10F03_rep_B_Leflunomidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113416866-1922437 2_G10_IZH2_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113416866-1922437 2_G10_IZH2_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201656692-1882026 16E10_rep_C_Zoledronic_acid_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201656692-1882026 16E10_rep_C_Zoledronic_acid_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112635157-1874174 11A06_rep_A_Piromidic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112635157-1874174 11A06_rep_A_Piromidic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET103.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET103.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150851486-1865006 02C10_rep_D_Dizocilpine maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150851486-1865006 02C10_rep_D_Dizocilpine maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_ehigh (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike4_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD4_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EBM010A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltB_#1_P4H12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (gltB_#1_P4H12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_173.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124356980-1862338 03A05_rep_A_Ornidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124356980-1862338 03A05_rep_A_Ornidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123011683-1875893 08H10_rep_A_Etoricoxibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123011683-1875893 08H10_rep_A_Etoricoxibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/30_D25062013T0200_1399CBU_0006_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111623463-1871573 10E03_rep_B_Sulfapyridinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111623463-1871573 10E03_rep_B_Sulfapyridinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8F08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case2_neg.mzXML at line 689
attributes construct error, line 37, column 67 (Case2_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trxC_P3H2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (trxC_P3H2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_03_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_03_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113508751-1922482 2_E4_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113508751-1922482 2_E4_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_C2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125512327-1877037 12F11_rep_D_Allopurinola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125512327-1877037 12F11_rep_D_Allopurinola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-cc4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1209.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1209.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH66.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152402993-1576881 Batch2_NCIH2085_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152134269-1576763 Batch2_MDAMB468_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_02_liver_control_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_02_liver_control_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike5_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_61.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114317695-1874931 12F04_rep_A_Primidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114317695-1874931 12F04_rep_A_Primidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR13h3b.mzML at line 689
Opening and ending tag mismatch: isolationWindow line 148741 and binary, line 148742, column 1892 (pBpumR13h3b.mzML, line 148742)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112452948-1874093 10H06_rep_D_Isocarboxazidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112452948-1874093 10H06_rep_D_Isocarboxazidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B3_id_MSn_negative.mzML at line 21
index 255 is out of bounds for axis 0 with size 255
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201701928-1878031 09D08_rep_C_Thiamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201701928-1878031 09D08_rep_C_Thiamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8B02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person20_plasma_youth_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person20_plasma_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151016981-1924705 3_G4_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151016981-1924705 3_G4_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_100.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_100.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009572_IBD200_E14_B2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case248_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case248_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/348.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_024EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e1/ff445aa51877eb3e8b829428ec86fe/input_file/QC_20170207_024EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/008_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224034855-1870409 01B10_rep_D_Captoprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224034855-1870409 01B10_rep_D_Captoprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113143279-1922303 1_G10_IZH2_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113143279-1922303 1_G10_IZH2_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124447808-1862378 03A03_rep_A_Pentylenetetrazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124447808-1862378 03A03_rep_A_Pentylenetetrazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K7_id_MSn_positive.mzML at line 21
index 384 is out of bounds for axis 0 with size 384
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_135.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_B3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Pool_11_B-A2_1_5561.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_H2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person28_RBC_youth_POS.mzXML at line 689
attributes construct error, line 41, column 81 (Person28_RBC_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/288.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7D02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152206647-1868033 05A03_rep_D_Alfuzosin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152206647-1868033 05A03_rep_D_Alfuzosin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/003_1016_1_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_120_2A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_29_male_2022_1017_Michael_neg-0.0055.mzML at line 689
Premature end of data in tag binary line 26799, line 26799, column 1200119 (4_29_male_2022_1017_Michael_neg-0.0055.mzML, line 26799)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125630807-1863058 03F02_rep_D_Piroxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125630807-1863058 03F02_rep_D_Piroxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151418451-1576406 Batch7_HARA_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121642125-1879572 15E01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121642125-1879572 15E01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_39_AC+_40.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d3_280_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 42868, column 1 (SysVirol_IFL001_1918_d3_280_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 42868)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_27_AC+_53.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C17_id_MSn_negative.mzML at line 21
index 282 is out of bounds for axis 0 with size 282
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_A12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_A12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121846533-1867142 04C05_rep_C_Dyclonine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121846533-1867142 04C05_rep_C_Dyclonine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_159_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/11_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/21_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113931074-1922710 3_F10_STE2_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113931074-1922710 3_F10_STE2_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/deoA_P3F1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (deoA_P3F1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114306776-1874922 12A10_rep_A_Diacereina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114306776-1874922 12A10_rep_A_Diacereina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201445906-1881931 16F11_rep_C_Ritonavira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201445906-1881931 16F11_rep_C_Ritonavira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_93.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/005_Soil_10mMIntra_3_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121650084-1867050 04E08_rep_B_Oxybutynin_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121650084-1867050 04E08_rep_B_Oxybutynin_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122213052-1879823 15H03_rep_C_Moxifloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122213052-1879823 15H03_rep_C_Moxifloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125519083-1877042 12E11_rep_D_Protriptyline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125519083-1877042 12E11_rep_D_Protriptyline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNX435_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpBud1_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_90.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00077189.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123233475-1876007 08F04_rep_B_Diosminb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123233475-1876007 08F04_rep_B_Diosminb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D1_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100342946-1868942 06H06_rep_D_Brompheniramine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100342946-1868942 06H06_rep_D_Brompheniramine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_0126_190128153412.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trpE_#4_P5H2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (trpE_#4_P5H2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111926899-1872583 10F02_rep_C_Alclometasone_dipropionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111926899-1872583 10F02_rep_C_Alclometasone_dipropionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152129272-1576759 Batch1A_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210119_LKM_yeast_nBut_5to1_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/Alb-PDI-plasma-VLDL-26-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d3_282_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 31278, column 1 (SysVirol_IFT001_1918_d3_282_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 31278)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nhaB_#1_P4B3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (nhaB_#1_P4B3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/416.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD1_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_5_P_rep_3_B-D6_1_5668.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150417194705.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111819081-1872049 10B06_rep_C_Flecainide_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111819081-1872049 10B06_rep_C_Flecainide_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152846598-1577116 Batch3_ACHN_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111653865-1921571 1_G11_GAP1_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111653865-1921571 1_G11_GAP1_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009458_IBD200_E7_A9.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123854643-1876312 08A11_rep_C_Nicotinamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123854643-1876312 08A11_rep_C_Nicotinamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111711593-1921586 1_A1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111711593-1921586 1_A1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_G5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample209.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/speB_#5_P4C5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (speB_#5_P4C5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S005_0126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114049880-1874811 11C02_rep_D_Azlocillin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114049880-1874811 11C02_rep_D_Azlocillin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092960/raw/DDA/DDA/20221111-JC-471_Control_Soil_DDA_003_02.mzML at line 689
Invalid character: Char 0x0 out of allowed range
, line 158692, column 603 (20221111-JC-471_Control_Soil_DDA_003_02.mzML, line 158692)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_2_P_rep_1_B-D1_1_5662.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A14_id_MSn_positive.mzML at line 21
index 527 is out of bounds for axis 0 with size 527
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHL05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094756/peak/02_TO_mPlasma_CROT_main_BOTTOM_pos_MidNorm.mzML at line 689
Premature end of data in tag binary line 528371, line 528371, column 4298 (02_TO_mPlasma_CROT_main_BOTTOM_pos_MidNorm.mzML, line 528371)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150619310-1924500 2_D7_RGT2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150619310-1924500 2_D7_RGT2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153353838-1868576 06B07_rep_B_Bacampicillin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153353838-1868576 06B07_rep_B_Bacampicillin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153512220-1577427 Batch4_SKOV3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190117_ES_H3K_batch14_repA_215.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_E2_id_positive.mzML at line 21
index 388 is out of bounds for axis 0 with size 388
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120915915-1879237 14B11_rep_D_Oxaprozinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120915915-1879237 14B11_rep_D_Oxaprozinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123026173-1867701 05A08_rep_B_Cefoperazone_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123026173-1867701 05A08_rep_B_Cefoperazone_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222724920-1869808 01D04_rep_A_Diprophyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222724920-1869808 01D04_rep_A_Diprophyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case181_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case181_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170125_041EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/1f/bdfa2acc6a5b68bc2986da13a05487/input_file/SH9_20170125_041EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tauD_#1_P4F1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (tauD_#1_P4F1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GC9_01_16812.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151123624-1576262 Batch5_SHP77_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E22_id_MSn_positive.mzML at line 21
index 438 is out of bounds for axis 0 with size 438
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_353.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224305276-1870526 01F07_rep_D_Sulpirideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224305276-1870526 01F07_rep_D_Sulpirideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121704461-1867062 04H09_rep_B_Quinacrine_dihydrochloride_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121704461-1867062 04H09_rep_B_Quinacrine_dihydrochloride_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124332349-1876535 09F08_rep_A_3-alpha-Hydroxy-5-beta-androstan-17-oneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124332349-1876535 09F08_rep_A_3-alpha-Hydroxy-5-beta-androstan-17-oneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2E01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101945622-1869713 07D11_rep_D_Sulfasalazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101945622-1869713 07D11_rep_D_Sulfasalazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_med.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_3_Blood_HO_control_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_3_Blood_HO_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_55.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112504387-1874102 10C06_rep_D_Spiramycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112504387-1874102 10C06_rep_D_Spiramycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180501_ES_H3K_batch4_repC_64.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153927187-1577640 Batch6_NCIH1299_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H5_id_MSn_negative.mzML at line 21
index 327 is out of bounds for axis 0 with size 327
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009630_IBD200_E17_B10.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C11_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_Extracellular/mzML/Ex_Baicalin_3_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114947932-1875239 12D08_rep_B_Flurbiprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114947932-1875239 12D08_rep_B_Flurbiprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122820851-1880107 15A01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122820851-1880107 15A01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7F01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G4_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_15102101_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151113938-1865117 02C06_rep_D_Danazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151113938-1865117 02C06_rep_D_Danazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nirB_P4C7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (nirB_P4C7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purL_P5G10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (purL_P5G10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211206_LKM_mb_beads_nowash_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD6_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/TAA040_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124830113-1862671 03F09_rep_B_Fenbufenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124830113-1862671 03F09_rep_B_Fenbufenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224234508-1870502 01H08_rep_D_Prednisoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224234508-1870502 01H08_rep_D_Prednisoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B10_id_MSn_positive.mzML at line 21
index 460 is out of bounds for axis 0 with size 460
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_aqueous_longstudy_230215_173.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153408443-1577375 Batch3_KNS62_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00073376.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MSB06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_08.mzXML at line 689
Premature end of data in tag peaks line 20864, line 20868, column 15940 (20121114_08.mzXML, line 20868)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112528592-1922016 4_A10_GPR1_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112528592-1922016 4_A10_GPR1_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C17_id_MSn_positive.mzML at line 21
index 686 is out of bounds for axis 0 with size 686
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ2_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150757565-1864964 02A06_rep_D_Baclofen (R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150757565-1864964 02A06_rep_D_Baclofen (R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yqaB_#1_P4F2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (yqaB_#1_P4F2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150006665-1864121 02A07_rep_B_Acyclovira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150006665-1864121 02A07_rep_B_Acyclovira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101042169-1869277 07D09_rep_B_Budesonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101042169-1869277 07D09_rep_B_Budesonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224257675-1870520 01F08_rep_D_Benoxinate hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224257675-1870520 01F08_rep_D_Benoxinate hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122111848-1879777 15D08_rep_B_Olopatadine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122111848-1879777 15D08_rep_B_Olopatadine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample145_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D1_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-010.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-010.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Spombe_cell_sample3_NEG.mzXML at line 689
attributes construct error, line 38, column 79 (Spombe_cell_sample3_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153936539-1577648 Batch6_SF539_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080965/ccms_peak/ME3152110.mzML at line 689
attributes construct error, line 167378, column 78 (ME3152110.mzML, line 167378)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152952008-1868391 06F10_rep_A_Butalbitalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152952008-1868391 06F10_rep_A_Butalbitalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153811370-1577576 Batch6_SF539_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_10_liver_RESV_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_10_liver_RESV_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlich1001R324h1a.mzML at line 88
Invalid base64-encoded string: number of data characters (3457) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113913146-1874733 11H06_rep_D_Reserpineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113913146-1874733 11H06_rep_D_Reserpineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121853308-1879672 15E05_rep_B_Ethinylestradiola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121853308-1879672 15E05_rep_B_Ethinylestradiola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ubiA_P4F12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (ubiA_P4F12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cusC_#4_P4E7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (cusC_#4_P4E7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G10P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std a 100a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample186_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_Plasma4_NEG.mzXML at line 689
attributes construct error, line 38, column 75 (Person4_Plasma4_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223552301-1870192 01H05_rep_C_Amitryptiline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223552301-1870192 01H05_rep_C_Amitryptiline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/TM-plasma-S3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210313_LKM_mb_rapid_beads_40min_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Serratia_ficaria_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_11P_A9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125802765-1877168 13F11_rep_A_Rimexoloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125802765-1877168 13F11_rep_A_Rimexoloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124608432-1862558 03A05_rep_B_Ornidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124608432-1862558 03A05_rep_B_Ornidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007728_032218-buffer ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Pool_3_B-A2_1_5502.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111558385-1871554 10G04_rep_B_Clofibric_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111558385-1871554 10G04_rep_B_Clofibric_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153630812-1577492 Batch5_A704_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_F7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.liv_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151931386-1576666 Batch1_HCC1143_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121956214-1879719 15E09_rep_B_Clarithromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121956214-1879719 15E09_rep_B_Clarithromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152953282-1868392 06H01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152953282-1868392 06H01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130004138-1877262 13C03_rep_A_Nandroloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130004138-1877262 13C03_rep_A_Nandroloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111427101-1871484 10E07_rep_B_Tinidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111427101-1871484 10E07_rep_B_Tinidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_113.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_121.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_121.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/3.6_ITA.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_009ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/01/dc5f41f1cdabfddbb44999c7fbef28/input_file/QC_20170209_009ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150640496-1924518 2_C11_RGT2_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150640496-1924518 2_C11_RGT2_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114701721-1875106 12D05_rep_B_Estronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114701721-1875106 12D05_rep_B_Estronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD3_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD6_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A7_id_MSn_negative.mzML at line 21
index 217 is out of bounds for axis 0 with size 217
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ10091451.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0045_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/other/Sequence/20191010_MSMSChooser_GNPS00004-GNPS00006.csv at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145623421-1863941 02H01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145623421-1863941 02H01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007504_031618-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125459652-1877027 12F06_rep_D_(-)-MK_801_hydrogen_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125459652-1877027 12F06_rep_D_(-)-MK_801_hydrogen_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/641.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I5_id_MSn_positive.mzML at line 21
index 610 is out of bounds for axis 0 with size 610
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/491-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125421459-1876998 12C03_rep_D_Abacavir_Sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125421459-1876998 12C03_rep_D_Abacavir_Sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124215298-1862257 03B04_rep_A_Tranylcypromine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124215298-1862257 03B04_rep_A_Tranylcypromine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R224h1a.mzML at line 689
attributes construct error, line 91988, column 163 (pBlichMO17R224h1a.mzML, line 91988)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101354579-1869431 07B01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101354579-1869431 07B01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1061.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI4b_1_18_1_887.mzML at line 689
Premature end of data in tag binary line 4275825, line 4275825, column 121637 (50130_microPOTS_Rat_Brain_ROI4b_1_18_1_887.mzML, line 4275825)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_G5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlC1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlC1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GA8_01_12071.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person11_plasma_youth_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person11_plasma_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_28_RIN_53.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_28_RIN_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_8_Liver_Ma_control_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_8_Liver_Ma_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/115.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151133997-1924771 3_F8_SNF3_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151133997-1924771 3_F8_SNF3_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_69.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_G4_id_negative.mzML at line 21
index 198 is out of bounds for axis 0 with size 198
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/135-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sufA_P4B6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (sufA_P4B6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Cryobacterium_LYG002A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172709505-1889922 NNa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/001_Nitrate_Day4_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100430664-1868980 06H03_rep_D_Itoprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100430664-1868980 06H03_rep_D_Itoprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201737180-1882057 16D10_rep_C_Dofetilidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201737180-1882057 16D10_rep_C_Dofetilidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gmhA_P4D12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (gmhA_P4D12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_B12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_B12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_E4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GC10_01_11659.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112350923-1874043 10B06_rep_D_Flecainide_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112350923-1874043 10B06_rep_D_Flecainide_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/011_CRa_H9M5_M470_C14_K2_low_pos.mzXML at line 689
Premature end of data in tag msRun line 5, line 13744, column 1 (011_CRa_H9M5_M470_C14_K2_low_pos.mzXML, line 13744)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122806678-1867593 05H09_rep_A_Oxantel_pamoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122806678-1867593 05H09_rep_A_Oxantel_pamoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123025571-1875904 08G02_rep_A_Mizolastinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123025571-1875904 08G02_rep_A_Mizolastinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145743612-1864006 02C09_rep_A_Nomifensine maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145743612-1864006 02C09_rep_A_Nomifensine maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_0126_190128110822.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113145398-1874412 11D01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113145398-1874412 11D01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_05_321_prot_51_IMS_26Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlD1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlD1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_04_NOR_25.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_04_NOR_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152416444-1868131 05B03_rep_D_Practololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152416444-1868131 05B03_rep_D_Practololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092158827-1878713 14E06_rep_A_Topiramateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092158827-1878713 14E06_rep_A_Topiramateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_A10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_M16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145545689-1863911 02C01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145545689-1863911 02C01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/puuA_P3H12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (puuA_P3H12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122427488-1867415 04H04_rep_D_Trifluoperazine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122427488-1867415 04H04_rep_D_Trifluoperazine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165658982-2227453 PAT51.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/730.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hA3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hA3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ubiC_#2_P5F8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (ubiC_#2_P5F8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folP_P6A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (folP_P6A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_3_RESV_200uM_NEG.mzXML at line 689
attributes construct error, line 38, column 83 (HepG2_3_RESV_200uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1351.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1351.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112127061-1921805 2_D5_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112127061-1921805 2_D5_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100346593-1868945 06E11_rep_D_Dicloxacillin_sodium_salt_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100346593-1868945 06E11_rep_D_Dicloxacillin_sodium_salt_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222822729-1869852 01F02_rep_A_Mupirocinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222822729-1869852 01F02_rep_A_Mupirocinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170125_033EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ab/9aa38b220947e6930bf2cfca648f75/input_file/SH8_20170125_033EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123044953-1867714 05E09_rep_B_Bepridil_hydrochloride_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123044953-1867714 05E09_rep_B_Bepridil_hydrochloride_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_98.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_71.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_012712_Pseudomonas_aurantiaca1.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/943.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122851301-1880131 15A04_rep_D_Doxycycline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122851301-1880131 15A04_rep_D_Doxycycline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_73.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112539965-1874130 10D07_rep_D_Diethylstilbestrola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112539965-1874130 10D07_rep_D_Diethylstilbestrola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/btuC_#1_P5D4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (btuC_#1_P5D4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101930953-1869701 07D09_rep_D_Budesonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101930953-1869701 07D09_rep_D_Budesonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlD2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlD2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_F2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B10Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112149509-1873561 10E01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112149509-1873561 10E01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_106.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD3_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-blank (5).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152959513-1577178 Batch3_SCABER_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122335071-1879886 15G10_rep_C_Imiquimoda.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122335071-1879886 15G10_rep_C_Imiquimoda.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H14_id_negative.mzML at line 21
index 245 is out of bounds for axis 0 with size 245
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/533-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123235998-1876009 08D04_rep_B_Zaleplonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123235998-1876009 08D04_rep_B_Zaleplonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GA10_01_17143.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_H7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150821366-1924605 2_E3_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150821366-1924605 2_E3_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123226154-1867795 05A07_rep_B_Methyldopa_(L,-)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123226154-1867795 05A07_rep_B_Methyldopa_(L,-)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample131.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/biotin.mzXML at line 689
Premature end of data in tag peaks line 5247, line 5251, column 85481 (biotin.mzXML, line 5251)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/132-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/artQ_#2_P5B11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (artQ_#2_P5B11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_E7_id_negative.mzML at line 21
index 425 is out of bounds for axis 0 with size 425
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2D12_160527220133.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150312692-1864744 02B05_rep_B_Azathioprinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150312692-1864744 02B05_rep_B_Azathioprinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113212008-1922328 1_A7_IZH2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113212008-1922328 1_A7_IZH2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28022021_Batch02_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNT372_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ligA_P5D12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (ligA_P5D12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151700914-1576541 Batch7_7860_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR131_5h3a.mzML at line 88
Invalid base64-encoded string: number of data characters (6661) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_340.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124932817-1862721 03H08_rep_B_Ofloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124932817-1862721 03H08_rep_B_Ofloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/003_Soil_500mMExtra_1_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130648934-1877574 13H09_rep_C_Methyldopate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130648934-1877574 13H09_rep_C_Methyldopate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_61_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_61_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180821_ES_H3K_batch10_repA_147.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7C09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113124029-1874395 11C03_rep_B_Clidinium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113124029-1874395 11C03_rep_B_Clidinium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/213.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124358898-1876557 09A05_rep_A_N-Acetyl-DL-homocysteine_Thiolactoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124358898-1876557 09A05_rep_A_N-Acetyl-DL-homocysteine_Thiolactoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_14_Dorsal_skin_CMC_control_NEG.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_14_Dorsal_skin_CMC_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150739260-1864950 02C08_rep_C_Pioglitazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150739260-1864950 02C08_rep_C_Pioglitazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Streptosporangium_sp_WIAH03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101537805-1869511 07C05_rep_C_Etifenina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101537805-1869511 07C05_rep_C_Etifenina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD2_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124639843-1876682 09C02_rep_A_Pranlukasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124639843-1876682 09C02_rep_A_Pranlukasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_M21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD4_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0040_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHA001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112310643-1873626 10D11_rep_D_Pipenzolate_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112310643-1873626 10D11_rep_D_Pipenzolate_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIAI06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/12_D24062013T1719_1399CBU_0005_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_4_male_2022_1017_Michael_neg-0.0022.mzML at line 689
Premature end of data in tag binary line 21745, line 21745, column 1526564 (2_4_male_2022_1017_Michael_neg-0.0022.mzML, line 21745)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B17_id_MSn_positive.mzML at line 21
index 708 is out of bounds for axis 0 with size 708
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K15_id_negative.mzML at line 21
index 254 is out of bounds for axis 0 with size 254
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mhpA_#2_P3A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (mhpA_#2_P3A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNH287_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3C07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_AM_1.mzXML at line 689
Premature end of data in tag peaks line 2476, line 2480, column 11754 (L_AM_1.mzXML, line 2480)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/speC_P3H3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (speC_P3H3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate6/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092302884-1878764 14H08_rep_A_Azaperonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092302884-1878764 14H08_rep_A_Azaperonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092142150-1878700 14A07_rep_A_Repaglinidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092142150-1878700 14A07_rep_A_Repaglinidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J1_id.mzML at line 21
index 514 is out of bounds for axis 0 with size 514
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person25_RBC_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 81 (Person25_RBC_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G12_id_MSn_negative.mzML at line 21
index 348 is out of bounds for axis 0 with size 348
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD2_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095362/raw/MS2_VcS_1_17_1_7781.mzML at line 689
Premature end of data in tag chromatogramList line 662275, line 662276, column 1 (MS2_VcS_1_17_1_7781.mzML, line 662276)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control38_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control38_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ANT2_20EV_RA5_01_22513.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH11.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_53.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_53.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNY228_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rbsC_#1_P4A8_pos.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8G06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083449/peak/NIH_synthesis_UV_mzML/B_NP_Lib_UV.mzML at line 689
AttValue: ' expected, line 259103, column 46 (B_NP_Lib_UV.mzML, line 259103)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/007_1029_1_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_7_40x_2022_1006_Michael_pos-0.0025.mzML at line 689
Premature end of data in tag binary line 3573, line 3573, column 2014694 (1_7_40x_2022_1006_Michael_pos-0.0025.mzML, line 3573)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121403966-1866922 04B07_rep_B_Isotretinoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121403966-1866922 04B07_rep_B_Isotretinoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114302299-1922898 4_E4_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114302299-1922898 4_E4_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150959938-1865059 02D09_rep_D_Nalbuphine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150959938-1865059 02D09_rep_D_Nalbuphine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112129383-1921807 2_B3_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112129383-1921807 2_B3_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113539854-1874562 11B09_rep_C_Nadolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113539854-1874562 11B09_rep_C_Nadolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control178_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control178_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100415336-1868968 06C07_rep_D_Buflomedil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100415336-1868968 06C07_rep_D_Buflomedil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153840828-1577601 Batch6_CCRFCEM_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_384.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I12_id_negative.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_131a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151500272-1576441 Batch6_CALU3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123542886-1876160 08C09_rep_C_Galanthamine_hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123542886-1876160 08C09_rep_C_Galanthamine_hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007695_032218-5CRP3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092019/raw/5-Leyendecker_3-11_Lang_RP-highmz.mzML at line 689
Opening and ending tag mismatch: scanWindow line 236582 and binary, line 236583, column 321 (5-Leyendecker_3-11_Lang_RP-highmz.mzML, line 236583)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201857049-1878118 09F04_rep_D_Promazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201857049-1878118 09F04_rep_D_Promazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180915_ES_H3K_batch2_repD_22.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_145.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123302624-1876030 08F11_rep_B_Acamprosate_calciuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123302624-1876030 08F11_rep_B_Acamprosate_calciuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_0124_190125054110.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0048_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P4_id_MSn_negative.mzML at line 21
index 298 is out of bounds for axis 0 with size 298
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153527173-1868650 06E09_rep_C_Hydroxytacrine_maleate_(R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153527173-1868650 06E09_rep_C_Hydroxytacrine_maleate_(R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_E9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample034_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/169-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc058_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc058_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123131352-1875957 08C09_rep_B_Galanthamine_hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123131352-1875957 08C09_rep_B_Galanthamine_hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/397.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ03281567.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P10_id_MSn_positive.mzML at line 21
index 681 is out of bounds for axis 0 with size 681
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_240.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150030952-1864139 02F01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150030952-1864139 02F01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_02062001_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113824818-1874694 11F11_rep_C_Methylhydantoin-5-(L)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113824818-1874694 11F11_rep_C_Methylhydantoin-5-(L)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130024506-1877276 13B05_rep_A_Pronethalol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130024506-1877276 13B05_rep_A_Pronethalol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114254317-1874912 12E09_rep_A_Nilutamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114254317-1874912 12E09_rep_A_Nilutamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2T3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2T3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007550_031618-1CRP2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101647648-1869568 07F04_rep_C_Phenacetinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101647648-1869568 07F04_rep_C_Phenacetinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_2_RESV_0uM_NEG.mzXML at line 689
attributes construct error, line 38, column 81 (HepG2_2_RESV_0uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GB3_01_17025.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/15-4_idMsMs_25min_40eV_GE3_01_4247.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/432.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122006685-1867205 04E07_rep_C_Perhexiline_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122006685-1867205 04E07_rep_C_Perhexiline_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/280.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150820230-1924604 2_A7_RGT2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150820230-1924604 2_A7_RGT2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_102.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bacA_P4A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (bacA_P4A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122825355-1875810 08G05_rep_A_Mercaptopurinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122825355-1875810 08G05_rep_A_Mercaptopurinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111643288-1921562 1_C4_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111643288-1921562 1_C4_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC15.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113714812-1874638 11H02_rep_C_Iopamidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113714812-1874638 11H02_rep_C_Iopamidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124707705-1876704 09E08_rep_A_Tramadol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124707705-1876704 09E08_rep_A_Tramadol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124647398-1876688 09G06_rep_A_Methyl_benzethonium_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124647398-1876688 09G06_rep_A_Methyl_benzethonium_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201627383-1878005 09H10_rep_C_Cephalothin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201627383-1878005 09H10_rep_C_Cephalothin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case193_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case193_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control142_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control142_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152930421-1868374 06A08_rep_A_Adamantamine_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152930421-1868374 06A08_rep_A_Adamantamine_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ5_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD5_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223417383-1870119 01G01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223417383-1870119 01G01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample039_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151638627-1925027 4_C5_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151638627-1925027 4_C5_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130853499-1877674 13A01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130853499-1877674 13A01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151213471-1576302 Batch5_PC9_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ6_8 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151244803-1576328 Batch5_HCC1187_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIAE02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/exbD_P4E3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (exbD_P4E3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fabF_P3B4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (fabF_P3B4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNT372_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/147-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123018888-1867696 05G10_rep_B_Ketoconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123018888-1867696 05G10_rep_B_Ketoconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpA_P3C6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (glpA_P3C6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122953196-1867677 05C04_rep_B_Desipramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122953196-1867677 05C04_rep_B_Desipramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092814856-1879006 14B05_rep_B_Levopropoxyphene_napsylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092814856-1879006 14B05_rep_B_Levopropoxyphene_napsylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112538836-1922025 4_E5_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112538836-1922025 4_E5_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114042388-1922773 3_F7_STE2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114042388-1922773 3_F7_STE2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_19040322_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrdD_P3F5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (nrdD_P3F5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153617630-1577481 Batch5_HT29_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_048ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/21/36d9d98090f29ab68c0c32c7e220b9/input_file/QC_20170127_048ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2G08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152952461-1577172 Batch3_MIAPACA2_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_qc_elow.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122304106-1879862 15C11_rep_C_Fluconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122304106-1879862 15C11_rep_C_Fluconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113507067-1874536 11C02_rep_C_Azlocillin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113507067-1874536 11C02_rep_C_Azlocillin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C8_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M13_id_MSn_positive.mzML at line 21
index 713 is out of bounds for axis 0 with size 713
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O16_id_MSn_positive.mzML at line 21
index 530 is out of bounds for axis 0 with size 530
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_71.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170125_012EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/7b/ec130ed441419611a69e6f3a012002/input_file/QC_20170125_012EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kduD_#3_P5H1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (kduD_#3_P5H1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113621575-1874595 11F01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113621575-1874595 11F01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_248.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152837121-1577108 Batch3_SKLU1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_264.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2H09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GH1_01_11560.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J9_id_MSn_negative.mzML at line 21
index 365 is out of bounds for axis 0 with size 365
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111433624-1921065 1_F1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111433624-1921065 1_F1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike4_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_high.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V5_EDTAk2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007650_032118-1Thr1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S31.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S31.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2C4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2C4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD3_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rihA_P4H11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (rihA_P4H11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201439141-1877927 09B02_rep_C_Glimepirideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201439141-1877927 09B02_rep_C_Glimepirideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152619010-1576992 Batch2_OVCAR8_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L16_id_MSn_negative.mzML at line 21
index 285 is out of bounds for axis 0 with size 285
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lptB_#1_P4D11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (lptB_#1_P4D11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample106_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121147196-1879351 14F11_rep_D_Toltrazurilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121147196-1879351 14F11_rep_D_Toltrazurilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121937700-1879705 15D02_rep_B_5-fluorouracilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121937700-1879705 15D02_rep_B_5-fluorouracilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GG5_01_17101.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/124-4_MsMs_25min_50eV_GE5_01_4135.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153032502-1868419 06G01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153032502-1868419 06G01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124643708-1862586 03F10_rep_B_Ketoprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124643708-1862586 03F10_rep_B_Ketoprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112351494-1921931 3_D8_GPR1_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112351494-1921931 3_D8_GPR1_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121542241-1866997 04C03_rep_B_Triprolidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121542241-1866997 04C03_rep_B_Triprolidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Negative_FGF1_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086335/raw/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Diaporthe CarGL-23A/M23AS7_a.mzML at line 689
error parsing attribute name, line 6815, column 1500 (M23AS7_a.mzML, line 6815)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124919633-1876771 12D04_rep_C_2-Aminobenzenesulfonamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124919633-1876771 12D04_rep_C_2-Aminobenzenesulfonamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD5_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153436825-1577398 Batch5_NCIH727_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlA1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlA1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153802029-1577568 Batch7_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hD2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hD2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD3_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009487_IBD200_E9_B2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_132b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122938104-1867665 05F05_rep_B_Methylergometrine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122938104-1867665 05F05_rep_B_Methylergometrine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151251941-1576334 Batch5_MALME3M_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151346985-1924886 4_C2_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151346985-1924886 4_C2_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114336183-1874946 12B05_rep_A_Butylparabena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114336183-1874946 12B05_rep_A_Butylparabena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150220086-1864704 02A02_rep_B_Metronidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150220086-1864704 02A02_rep_B_Metronidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case182_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case182_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_G2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBsubR131_5h2a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112945477-1922206 1_H8_IZH2_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112945477-1922206 1_H8_IZH2_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121031572-1879294 14H06_rep_D_Ronidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121031572-1879294 14H06_rep_D_Ronidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153423960-1868600 06F02_rep_B_Alizapride_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153423960-1868600 06F02_rep_B_Alizapride_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ2_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG15.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_G8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/deoB_P3F11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (deoB_P3F11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_11P_A12_id_positive.mzML at line 21
index 245 is out of bounds for axis 0 with size 245
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151835425-1576619 Batch7_NCIH1693_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151912518-1576650 Batch7_NCIH510_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153901000-1577618 Batch7_MIAPACA2_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_B20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223726404-2227606 PAT51.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_183.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223939537-1870367 01F11_rep_C_Tolazoline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223939537-1870367 01F11_rep_C_Tolazoline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_G2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_C4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frdA_P4E5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (frdA_P4E5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153319158-1577335 Batch5_HDQP1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152351601-1576872 Batch2_NCIH460_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145656744-1863968 02A04_rep_A_Edrophonium chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145656744-1863968 02A04_rep_A_Edrophonium chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-blank (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223634292-1870224 01B10_rep_C_Captoprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223634292-1870224 01B10_rep_C_Captoprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_PDK_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114559667-1875058 12H05_rep_A_Tyloxapola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114559667-1875058 12H05_rep_A_Tyloxapola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample219.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150318859-1924347 1_G9_RGT2_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150318859-1924347 1_G9_RGT2_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125116807-1876858 12C10_rep_C_Nabumetoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125116807-1876858 12C10_rep_C_Nabumetoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD6_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample087_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093201665-1879182 14E03_rep_C_(-)-Eseroline_fumarate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093201665-1879182 14E03_rep_C_(-)-Eseroline_fumarate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124429409-1876582 09C04_rep_A_Zileutona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124429409-1876582 09C04_rep_A_Zileutona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092259/peak/Sample0002.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G02Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/focA_P3D9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (focA_P3D9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150205445-1864693 02C08_rep_B_Pioglitazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150205445-1864693 02C08_rep_B_Pioglitazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125401303-1876983 12H01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125401303-1876983 12H01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112922512-1874306 11H09_rep_A_Ioversola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112922512-1874306 11H09_rep_A_Ioversola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C22_id_negative.mzML at line 21
index 282 is out of bounds for axis 0 with size 282
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/3-coumaric_acid_neg.mzXML at line 689
Premature end of data in tag msRun line 5, line 10714, column 1 (3-coumaric_acid_neg.mzXML, line 10714)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121259888-1879405 14C02_rep_D_Phensuximideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121259888-1879405 14C02_rep_D_Phensuximideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H19_id_MSn_positive.mzML at line 21
index 586 is out of bounds for axis 0 with size 586
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150518703-1924448 1_C11_RGT2_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150518703-1924448 1_C11_RGT2_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112409384-1921947 3_A3_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112409384-1921947 3_A3_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_10mM_D_AC_AS_Neg.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_10mM_D_AC_AS_Neg.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152655979-1577023 Batch2_PC3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EBM009.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_67.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153725962-1577538 Batch5_HT29_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123031730-1875909 08C10_rep_A_Azelastine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123031730-1875909 08C10_rep_A_Azelastine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E17_id.mzML at line 21
index 547 is out of bounds for axis 0 with size 547
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202104740-1882219 16D04_rep_D_Benidipine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202104740-1882219 16D04_rep_D_Benidipine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GC11_01_12108.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088829/raw/AFN07.mzXML at line 689
Specification mandates value for attribute centroiR, line 650838, column 19 (AFN07.mzXML, line 650838)
Error processing file: /data/datasets/server/MassIVE/MSV000084884/updates/2020-02-03_jamirimoghaddam_67410a78/raw/w20_Labn.mzML at line 689
Specification mandates value for attribute ac, line 74600, column 37 (w20_Labn.mzML, line 74600)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD5_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170207_045EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/05/7e306d39e68108a895a1bdc7bf1f79/input_file/MMW6_20170207_045EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_A11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_A2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124638618-1876681 09H07_rep_A_Pramoxine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124638618-1876681 09H07_rep_A_Pramoxine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/104.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153043160-1577210 Batch3_SKMEL5_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123311792-1867832 05C03_rep_B_Methapyrilene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123311792-1867832 05C03_rep_B_Methapyrilene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/625.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125644382-1863069 03H08_rep_D_Ofloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125644382-1863069 03H08_rep_D_Ofloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150455601-1924428 1_B8_RGT2_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150455601-1924428 1_B8_RGT2_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_131_3B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std a 001a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2F05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125112387-1876855 12A06_rep_C_Dolasetron_mesilatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125112387-1876855 12A06_rep_C_Dolasetron_mesilatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084307/peak/20190807 QC4_phenyl hexyl_2-5to100B_5uLmin_30min_5uLiny-Sample026.mzML at line 255
Error -3 while decompressing data: invalid code lengths set
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_A9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_E7_id_positive.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_95.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114011312-1922746 3_A4_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114011312-1922746 3_A4_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD2_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_106.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_C10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/20_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case215_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case215_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D14_id_MSn_positive.mzML at line 21
index 398 is out of bounds for axis 0 with size 398
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case97_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case97_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/693.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C11_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124940421-1862727 03C09_rep_C_Pentolinium_bitartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124940421-1862727 03C09_rep_C_Pentolinium_bitartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091925811-1878595 13H03_rep_D_Articaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091925811-1878595 13H03_rep_D_Articaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009420_IBD200_E5_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_8_Dorsal_skin_Ma_control_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_8_Dorsal_skin_Ma_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cof_P4C8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (cof_P4C8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121040776-1879301 14F07_rep_D_Estriolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121040776-1879301 14F07_rep_D_Estriolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122736695-1875772 08D02_rep_A_Emedastinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122736695-1875772 08D02_rep_A_Emedastinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125042880-1862777 03F04_rep_C_Fenspiride_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125042880-1862777 03F04_rep_C_Fenspiride_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151639447-1576523 Batch7_NCIH441_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170207_056EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c5/aa5c4ba8ee4279b4e3f959f834776b/input_file/SH10_20170207_056EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130404909-1877445 13C09_rep_B_Norgestimatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130404909-1877445 13C09_rep_B_Norgestimatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/235.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123749534-1876260 08E04_rep_C_Zafirlukasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123749534-1876260 08E04_rep_C_Zafirlukasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153357640-1868579 06C06_rep_B_Chicago_sky_blue_6Bb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153357640-1868579 06C06_rep_B_Chicago_sky_blue_6Bb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125503967-1862988 03G11_rep_D_Phentolamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125503967-1862988 03G11_rep_D_Phentolamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125157923-1862837 03D10_rep_C_Prilocaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125157923-1862837 03D10_rep_C_Prilocaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121948272-1879713 15F10_rep_B_Nalmefene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121948272-1879713 15F10_rep_B_Nalmefene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123046253-1867715 05E09_rep_B_Bepridil_hydrochloride_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123046253-1867715 05E09_rep_B_Bepridil_hydrochloride_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201636694-1882011 16C02_rep_C_(R)-Duloxetine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201636694-1882011 16C02_rep_C_(R)-Duloxetine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yihS_#3_P3G12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (yihS_#3_P3G12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_17_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J10_id_MSn_positive.mzML at line 21
index 709 is out of bounds for axis 0 with size 709
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/napA_P3G8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (napA_P3G8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150426225-1924404 1_C2_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150426225-1924404 1_C2_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121701356-1879587 15H05_rep_A_Rufloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121701356-1879587 15H05_rep_A_Rufloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD1_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD1_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/285.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_A11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/599.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112117541-1921797 2_F4_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112117541-1921797 2_F4_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093148143-1879171 14E01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093148143-1879171 14E01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112236282-1921865 3_H5_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112236282-1921865 3_H5_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-183_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092447372-1878845 14H07_rep_B_Dorzolamide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092447372-1878845 14H07_rep_B_Dorzolamide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111703085-1921579 1_C3_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111703085-1921579 1_C3_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096460/peak/mzml/SD_crude2_T4_3.mzML at line 689
Premature end of data in tag binary line 1179, line 1179, column 1624291 (SD_crude2_T4_3.mzML, line 1179)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-1-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H20_id_MSn_negative.mzML at line 21
index 353 is out of bounds for axis 0 with size 353
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_16_2022_1003_Michael_leming_liver_neg-0.0036.mzML at line 689
Premature end of data in tag binary line 25702, line 25702, column 1530305 (1_16_2022_1003_Michael_leming_liver_neg-0.0036.mzML, line 25702)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_C10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153704312-1577520 Batch4_977_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control168_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control168_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/399.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223311853-1870069 01A07_rep_B_Isoflupredone acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223311853-1870069 01A07_rep_B_Isoflupredone acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_B12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_B12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Blank_pesticide_170404225802.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_08_dorsal_skin_control_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_08_dorsal_skin_control_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG17.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_CABIN_sample06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_A9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_D5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mog_P3C3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (mog_P3C3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170125_029EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/99/f752ba324fe6fe28916dc7fd89fbf8/input_file/SH7_20170125_029EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES120.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/951.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2F12_160527053811.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case130_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case130_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/modC_P3G11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (modC_P3G11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078960/ccms_peak/Soce38-Hmix_SPL-6+5_RA1_01_20446.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125823819-1863152 04E10_rep_A_Pyrilamine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125823819-1863152 04E10_rep_A_Pyrilamine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153158690-1577270 Batch3_KU1919_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B22_id_MSn_positive.mzML at line 21
index 471 is out of bounds for axis 0 with size 471
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_23_RIN_53.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_23_RIN_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1E07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mrdA_P3H4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (mrdA_P3H4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112550285-1922035 4_H11_GPR1_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112550285-1922035 4_H11_GPR1_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122856682-1867632 05A02_rep_A_Streptomycin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122856682-1867632 05A02_rep_A_Streptomycin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GG1_01_11544.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H17_id_negative.mzML at line 21
index 249 is out of bounds for axis 0 with size 249
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092639456-1878933 14B03_rep_B_Iopanoic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092639456-1878933 14B03_rep_B_Iopanoic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152715076-1577039 Batch2_LOXIMVI_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153242346-1577305 Batch4_SW780_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_MEDIA-BLANK_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153146142-1577260 Batch4_NCIH2286_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malX_P4G3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (malX_P4G3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_133_3C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152314178-1576842 Batch2_NCIH520_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_A5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA20.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_E3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121422427-1879467 15D02_rep_A_5-fluorouracilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121422427-1879467 15D02_rep_A_5-fluorouracilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/682.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D8_id_negative.mzML at line 21
index 242 is out of bounds for axis 0 with size 242
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125409329-1876989 12G10_rep_D_(+,-)-Octopamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125409329-1876989 12G10_rep_D_(+,-)-Octopamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111659759-1871601 10E09_rep_B_Vidarabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111659759-1871601 10E09_rep_B_Vidarabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/79.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085888/peak/peak/Iboxygaine.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaA_P6E9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (paaA_P6E9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145746125-1864008 02H10_rep_A_Dihydrostreptomycin sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145746125-1864008 02H10_rep_A_Dihydrostreptomycin sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K15_id_MSn_positive.mzML at line 21
index 748 is out of bounds for axis 0 with size 748
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_75_CNR_51.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_75_CNR_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F4_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082735/ccms_peak/ST000664/EX00347-lipidomics/Raw data/POS/BATCH1/20150318_Pooled.mzXML at line 689
error parsing attribute name, line 25761, column 10 (20150318_Pooled.mzXML, line 25761)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0008_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0008_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223324621-1870079 01H07_rep_B_Dibucainea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223324621-1870079 01H07_rep_B_Dibucainea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/4.1_4OI.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_136a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_116.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125402667-1876984 12H01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125402667-1876984 12H01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C22_id.mzML at line 21
index 529 is out of bounds for axis 0 with size 529
Error processing file: /data/datasets/server/MassIVE/MSV000092716/peak/Peak List/L_Pooled_CM_POS_3.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180420_ES_H3K_batch6_repC_98.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114347108-1874955 12F06_rep_A_(-)-MK_801_hydrogen_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114347108-1874955 12F06_rep_A_(-)-MK_801_hydrogen_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153525873-1577438 Batch5_HCT116_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130121214-1877318 13B09_rep_B_Memantine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130121214-1877318 13B09_rep_B_Memantine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ2_8 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093126313-1879153 14A11_rep_C_Quinethazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093126313-1879153 14A11_rep_C_Quinethazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153701954-1577518 Batch5_A704_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151102551-1865108 02B03_rep_D_Zimelidine dihydrochloride monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151102551-1865108 02B03_rep_D_Zimelidine dihydrochloride monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152622693-1868228 06E01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152622693-1868228 06E01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094546/raw/QTOF Brucker/HE04_Penicillium.mzXML at line 689
Extra content at the end of the document, line 5572, column 1 (HE04_Penicillium.mzXML, line 5572)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc046_neg.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc046_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GG2_01_16861.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152422172-1576896 Batch2_T47D_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaB_P3A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (paaB_P3A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153800841-1577567 Batch6_NCIH82_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190114_ES_H3K_batch13_repC_188.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223206499-1870020 01F09_rep_B_Oxethazaineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223206499-1870020 01F09_rep_B_Oxethazaineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113615081-1922539 2_F1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113615081-1922539 2_F1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153233727-1577298 Batch5_OVCAR5_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/290.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fadI_#1_P5E3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (fadI_#1_P5E3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114455622-1875011 12H11_rep_A_Aminocaproic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114455622-1875011 12H11_rep_A_Aminocaproic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5A07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111913637-1921691 2_C9_GAP1_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111913637-1921691 2_C9_GAP1_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0034_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0034_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111347885-1871454 10E08_rep_B_Guanadrel_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111347885-1871454 10E08_rep_B_Guanadrel_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E12_id_negative.mzML at line 21
index 273 is out of bounds for axis 0 with size 273
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD6_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124345658-1862329 03C03_rep_A_Levamisole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124345658-1862329 03C03_rep_A_Levamisole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201110481-1881769 16G06_rep_B_Ampiroxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201110481-1881769 16G06_rep_B_Ampiroxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N14_id_MSn_positive.mzML at line 21
index 682 is out of bounds for axis 0 with size 682
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240408_pluskal_enammol_5004_A1_id_MSn_positive_20240408215153.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J16_id_negative.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person07_plasma_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person07_plasma_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085888/peak/peak/Strictosamide_50_70_30.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170209_063ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/32/34f8f0fafc470e19ad4f7e20be96f9/input_file/SH9_20170209_063ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EBM006C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/-ve_MS_M.mzXML at line 689
Premature end of data in tag peaks line 23726, line 23729, column 221663 (-ve_MS_M.mzXML, line 23729)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_79.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_68.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_66.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152957185-1577176 Batch3_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082694/peak/ST000089/part2/rawdata-LC-QTOF-lipidomics/positive-mode/CSH_Pooled.mzXML at line 689
Extra content at the end of the document, line 59799, column 1 (CSH_Pooled.mzXML, line 59799)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201740304-1878060 09A04_rep_C_Flunisolidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201740304-1878060 09A04_rep_C_Flunisolidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223756269-2227632 PAT42.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_0123_190124023347.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C6_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_70_AC+_50.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1556.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1556.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_0124_190125013157.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GA7_01_17015.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153943620-1577654 Batch6_NCIH146_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151910978-1867892 05A07_rep_C_Methyldopa_(L,-)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151910978-1867892 05A07_rep_C_Methyldopa_(L,-)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113511013-1922484 2_H7_IZH2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113511013-1922484 2_H7_IZH2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD4_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/80.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/452.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122141374-1879799 15B04_rep_C_Bromhexine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122141374-1879799 15B04_rep_C_Bromhexine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_B6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145726301-1863992 02F09_rep_A_Terfenadineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145726301-1863992 02F09_rep_A_Terfenadineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201757613-1878073 09F07_rep_D_Ethotoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201757613-1878073 09F07_rep_D_Ethotoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N10_id_MSn_positive.mzML at line 21
index 576 is out of bounds for axis 0 with size 576
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hA1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hA1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112139828-1921816 2_B4_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112139828-1921816 2_B4_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1333.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1333.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201422474-1881913 16D08_rep_C_Adapalenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201422474-1881913 16D08_rep_C_Adapalenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121357594-1879448 15C11_rep_A_Fluconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121357594-1879448 15C11_rep_A_Fluconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/008_1217_1_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_11P_A3_id_positive.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121614019-1867022 04E05_rep_B_Diethylcarbamazine_citratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121614019-1867022 04E05_rep_B_Diethylcarbamazine_citratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/213-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220222_LKM_Celegans_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_E2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person03_RBC_youth_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Person03_RBC_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S100.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S100.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153249726-1577311 Batch5_EBC1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123850765-1876309 08C06_rep_C_Voriconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123850765-1876309 08C06_rep_C_Voriconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_57.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153154932-1577267 Batch5_NCIH23_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201449950-1881934 16G01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201449950-1881934 16G01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123835899-1876297 08D10_rep_C_Celiprolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123835899-1876297 08D10_rep_C_Celiprolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/436.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Liver_raw files/Lumos_ISAS_liver_QC4.mzML at line 689
Premature end of data in tag spectrumList line 92, line 37870, column 1 (Lumos_ISAS_liver_QC4.mzML, line 37870)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151201309-1576292 Batch5_NCIH446_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114047301-1874809 11C01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114047301-1874809 11C01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_B1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/333.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/16FEB2021 Column3_test_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111814071-1921640 2_B7_GAP1_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111814071-1921640 2_B7_GAP1_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124645017-1862587 03F10_rep_B_Ketoprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124645017-1862587 03F10_rep_B_Ketoprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201715300-1878041 09H03_rep_C_Benzocaineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201715300-1878041 09H03_rep_C_Benzocaineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control86_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control86_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201250125-1877847 09F02_rep_B_Tylosinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201250125-1877847 09F02_rep_B_Tylosinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine5cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine5cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223919990-1870352 01B11_rep_C_Minoxidilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223919990-1870352 01B11_rep_C_Minoxidilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 Column1_test_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/158-4_Ms_25min__GE6_01_4171.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123038035-1875914 08F06_rep_A_(-)-Emtricitabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123038035-1875914 08F06_rep_A_(-)-Emtricitabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR23h2b.mzML at line 689
Opening and ending tag mismatch: scanWindowList line 34377 and spectrum, line 34408, column 20 (pBpumR23h2b.mzML, line 34408)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222948964-1869917 01B09_rep_A_Idoxuridinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222948964-1869917 01B09_rep_A_Idoxuridinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151056863-1924739 3_D9_SNF3_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151056863-1924739 3_D9_SNF3_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6E09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1086.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET88.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET88.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_A9_id_negative.mzML at line 21
index 271 is out of bounds for axis 0 with size 271
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E1_id_MSn_positive.mzML at line 21
index 387 is out of bounds for axis 0 with size 387
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091835656-1878555 13G05_rep_D_Nifurtimoxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091835656-1878555 13G05_rep_D_Nifurtimoxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_E12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082709/ccms_peak/ST000669/EX00485-lipidomics/Raw data/POS/20150924_TP_Subretinal.mzXML at line 689
Opening and ending tag mismatch: peaks line 45249 and msRun, line 69247, column 11 (20150924_TP_Subretinal.mzXML, line 69247)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_01_leg_muscle_control_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_01_leg_muscle_control_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/215.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_120_2C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_B6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123204380-1875984 08G03_rep_B_Amisulpridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123204380-1875984 08G03_rep_B_Amisulpridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/so4_cysU_P6F3_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024913 (so4_cysU_P6F3_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case155_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case155_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/748.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150558555-1924482 1_B1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150558555-1924482 1_B1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223041763-1869956 01A01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223041763-1869956 01A01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100613593-1869062 07C01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100613593-1869062 07C01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_A12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B19_id_MSn_positive.mzML at line 21
index 434 is out of bounds for axis 0 with size 434
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153739149-1577549 Batch6_HL60_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093012525-1879099 14E02_rep_C_(S)-propranolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093012525-1879099 14E02_rep_C_(S)-propranolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124941681-1862728 03E11_rep_C_Fenbendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124941681-1862728 03E11_rep_C_Fenbendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_188.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153356287-1577365 Batch3_KU1919_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G8_id_MSn_positive.mzML at line 21
index 597 is out of bounds for axis 0 with size 597
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123657564-1876219 08G11_rep_C_Dimethisoquin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123657564-1876219 08G11_rep_C_Dimethisoquin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample102.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091644806-1878467 13B09_rep_D_Memantine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091644806-1878467 13B09_rep_D_Memantine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123159019-1867773 05E10_rep_B_Meloxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123159019-1867773 05E10_rep_B_Meloxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089617/ccms_peak/HR_Treatment_Replicate1_20210103003937.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_109.mzXML at line 689
Premature end of data in tag peaks line 21272, line 21276, column 11844 (20121114_109.mzXML, line 21276)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111802617-1872036 10B01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111802617-1872036 10B01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150949511-1865051 02D08_rep_D_Chlorpheniramine maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150949511-1865051 02D08_rep_D_Chlorpheniramine maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007620_032118-Unst4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_71.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_F4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yfbT_P3C2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (yfbT_P3C2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C8_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113208534-1874430 11D10_rep_B_Ganciclovira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113208534-1874430 11D10_rep_B_Ganciclovira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GF12_01_11540.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121404135-1879453 15F01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121404135-1879453 15F01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_9_Liver_Ma_control_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_9_Liver_Ma_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124613558-1862562 03D01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124613558-1862562 03D01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123052523-1867720 05D04_rep_B_Moclobemidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123052523-1867720 05D04_rep_B_Moclobemidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8F07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_C5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike6_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122442525-1879937 15F11_rep_C_Bifonazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122442525-1879937 15F11_rep_C_Bifonazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case131_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case131_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009768_IBD200_E23_B8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125239939-1862871 03E07_rep_C_Meclofenamic_acid_sodium_salt_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125239939-1862871 03E07_rep_C_Meclofenamic_acid_sodium_salt_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_E8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150302213-1864736 02H03_rep_B_Chloroxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150302213-1864736 02H03_rep_B_Chloroxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121847839-1867143 04C05_rep_C_Dyclonine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121847839-1867143 04C05_rep_C_Dyclonine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_01_blood_control_oral_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_01_blood_control_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/CORN_AAD5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/101_91.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_0126_190127182133.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125638473-1877103 12G06_rep_D_Salmeterola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125638473-1877103 12G06_rep_D_Salmeterola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/znuB_#3_P4H8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (znuB_#3_P4H8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114415170-1874978 12E10_rep_A_Ketorolac_tromethaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114415170-1874978 12E10_rep_A_Ketorolac_tromethaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153358950-1868580 06C11_rep_B_Cisapridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153358950-1868580 06C11_rep_B_Cisapridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122101703-1867249 04B02_rep_C_Chlorothiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122101703-1867249 04B02_rep_C_Chlorothiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_LB_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121203287-1879363 14H09_rep_D_Cefepime_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121203287-1879363 14H09_rep_D_Cefepime_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125813065-1863143 04D01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125813065-1863143 04D01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D7_id_MSn_positive.mzML at line 21
index 728 is out of bounds for axis 0 with size 728
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_E4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202153725-1878256 09A04_rep_D_Flunisolidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202153725-1878256 09A04_rep_D_Flunisolidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124833504-1876737 12G09_rep_C_Timolol_maleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124833504-1876737 12G09_rep_C_Timolol_maleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151731877-1576567 Batch4_HPAC_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121524233-1879512 15B05_rep_A_Anethole-trithionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121524233-1879512 15B05_rep_A_Anethole-trithionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201232125-1881830 16D03_rep_B_Pidotimodb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201232125-1881830 16D03_rep_B_Pidotimodb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111446429-1871499 10A02_rep_B_Althiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111446429-1871499 10A02_rep_B_Althiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153543580-1868663 06E05_rep_C_Oxcarbazepineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153543580-1868663 06E05_rep_C_Oxcarbazepineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dfp_#5_P3D1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (dfp_#5_P3D1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ispD_P3A3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ispD_P3A3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151229549-1924819 3_C11_SNF3_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151229549-1924819 3_C11_SNF3_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike0_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092329582-1878785 14A05_rep_A_Prednicarbateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092329582-1878785 14A05_rep_A_Prednicarbateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S005_0126_190127162510.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/236.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample110_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100701465-1869101 07C09_rep_A_Acenocoumarola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100701465-1869101 07C09_rep_A_Acenocoumarola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153523370-1577436 Batch5_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151250781-1576333 Batch5_HCC1187_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bioF_P3D9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (bioF_P3D9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101047129-1869281 07A04_rep_B_Rofecoxiba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101047129-1869281 07A04_rep_B_Rofecoxiba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N14_id_MSn_positive.mzML at line 21
index 547 is out of bounds for axis 0 with size 547
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101605325-1869533 07F06_rep_C_Methoxamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101605325-1869533 07F06_rep_C_Methoxamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/s7p_pfkA_P6D7_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024911 (s7p_pfkA_P6D7_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_A3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/353.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124137793-1876442 08B11_rep_D_Argatrobana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124137793-1876442 08B11_rep_D_Argatrobana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_211.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125031689-1876825 12F10_rep_C_Iodipamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125031689-1876825 12F10_rep_C_Iodipamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_G10_id_positive.mzML at line 21
index 317 is out of bounds for axis 0 with size 317
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person17_blood_youth_POS.mzXML at line 689
attributes construct error, line 41, column 83 (Person17_blood_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170125_057EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/d9/a1c726c8c69cb1b3ee7f0a1f292662/input_file/SH7_20170125_057EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR124h2a.mzML at line 689
Opening and ending tag mismatch: spectrum line 263792 and binary, line 263795, column 824 (pBpumR124h2a.mzML, line 263795)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125758789-1877165 13G06_rep_A_Letrozolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125758789-1877165 13G06_rep_A_Letrozolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD4_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121540096-1879524 15H11_rep_A_Hexachlorophenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121540096-1879524 15H11_rep_A_Hexachlorophenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/QC_11_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121407910-1879456 15G06_rep_A_Racepinephrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121407910-1879456 15G06_rep_A_Racepinephrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ZK4636.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153308139-1868540 06D06_rep_B_Cyclosporin_Aa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153308139-1868540 06D06_rep_B_Cyclosporin_Aa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHL18.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152025170-1867952 05C01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152025170-1867952 05C01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH4.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124456419-1862385 03D01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124456419-1862385 03D01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_54.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_101b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153630183-1868701 06B08_rep_C_Lamivudineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153630183-1868701 06B08_rep_C_Lamivudineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fecA_P5D8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (fecA_P5D8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM6G003Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_A9_id_positive.mzML at line 21
index 351 is out of bounds for axis 0 with size 351
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_68.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153120326-1868456 06A03_rep_B_Haloprogina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153120326-1868456 06A03_rep_B_Haloprogina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122512030-1879960 15F07_rep_C_Benztropine_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122512030-1879960 15F07_rep_C_Benztropine_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1G12_160526082355.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Negative_Veh_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_124.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/236.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C12_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122030055-1867224 04H01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122030055-1867224 04H01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151320847-1576358 Batch6_NCIH1838_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp2/20180309173103528-1989051 skin 5da.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153417726-1868595 06C01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153417726-1868595 06C01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1019.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample5n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wcaJ_P4A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (wcaJ_P4A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_F13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130537886-1877518 13H04_rep_C_Nomegestrol_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130537886-1877518 13H04_rep_C_Nomegestrol_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G01Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/chbG_#1_P4G8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (chbG_#1_P4G8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113729845-1874650 11H08_rep_C_Scopolamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113729845-1874650 11H08_rep_C_Scopolamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088819/updates/2022-07-20_jdeutsch79_e3394df0/raw/Winter_LC123_243_P1-A-6_01_17892.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B15_id_MSn_negative.mzML at line 21
index 262 is out of bounds for axis 0 with size 262
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223940900-2227723 PAT39.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123210659-1875989 08A08_rep_B_Itraconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123210659-1875989 08A08_rep_B_Itraconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/356.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_B5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125706359-1863087 03G03_rep_D_Antimycin_Ab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125706359-1863087 03G03_rep_D_Antimycin_Ab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_193.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample122.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/9-ribosyl-trans-zeatin.mzXML at line 689
Premature end of data in tag peaks line 4687, line 4691, column 81390 (9-ribosyl-trans-zeatin.mzXML, line 4691)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD1_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151547113-1576479 Batch7_HCC38_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150810253-1864974 02A10_rep_D_Busulfana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150810253-1864974 02A10_rep_D_Busulfana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kch_P3E10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024988 (kch_P3E10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/methyl_(-)-jasmonate.mzXML at line 689
Premature end of data in tag msRun line 5, line 11594, column 1 (methyl_(-)-jasmonate.mzXML, line 11594)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152014440-1576700 Batch1_HCC1395_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_193_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201733628-1878055 09G11_rep_C_Doxofyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201733628-1878055 09G11_rep_C_Doxofyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180915_ES_H3K_batch2_repB_26.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101502682-1869485 07F03_rep_C_Grepafloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101502682-1869485 07F03_rep_C_Grepafloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153729650-1577541 Batch4_NCIH1048_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125015056-1862755 03G03_rep_C_Antimycin_Ab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125015056-1862755 03G03_rep_C_Antimycin_Ab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100750976-1869141 07A02_rep_A_Serotonin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100750976-1869141 07A02_rep_A_Serotonin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112638157-1922077 4_G8_GPR1_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112638157-1922077 4_G8_GPR1_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_33_CNR_15.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_33_CNR_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_134.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223942359-1870369 01C06_rep_C_Thiamphenicola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223942359-1870369 01C06_rep_C_Thiamphenicola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_218.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/2.3_VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091828218-1878549 13D07_rep_D_Prothionamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091828218-1878549 13D07_rep_D_Prothionamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_68.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153019418-1577193 Batch3_647V_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111632648-1921553 1_D7_GAP1_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111632648-1921553 1_D7_GAP1_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152224924-1576803 Batch2_T47D_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101136286-1869320 07A01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101136286-1869320 07A01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_16061440_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C12_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_F4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080183/ccms_peak/IHH_4Weeks/36-F-03.mzXML at line 689
Opening and ending tag mismatch: peaks line 4913 and scan, line 4924, column 12 (36-F-03.mzXML, line 4924)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114000272-1874771 11E05_rep_D_Procyclidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114000272-1874771 11E05_rep_D_Procyclidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190123_ES_H3K_batch15_repB_170.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152614252-1576988 Batch1_CALU6_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152758270-1577075 Batch2_PC3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/3'-AMP_neg.mzXML at line 689
Premature end of data in tag msRun line 5, line 11274, column 1 (3'-AMP_neg.mzXML, line 11274)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130524307-1877507 13F06_rep_C_Ethamsylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130524307-1877507 13F06_rep_C_Ethamsylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124924924-1876775 12A08_rep_C_Oxybenzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124924924-1876775 12A08_rep_C_Oxybenzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153333209-1868560 06F04_rep_B_Calcipotrienea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153333209-1868560 06F04_rep_B_Calcipotrienea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114959208-1875248 12A01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114959208-1875248 12A01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123852069-1876310 08B02_rep_C_Tetracaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123852069-1876310 08B02_rep_C_Tetracaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150608973-1924491 1_B9_RGT2_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150608973-1924491 1_B9_RGT2_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124622339-1876668 09H04_rep_A_Dipyronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124622339-1876668 09H04_rep_A_Dipyronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D12_id_MSn_positive.mzML at line 21
index 470 is out of bounds for axis 0 with size 470
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153006708-1577184 Batch3_BTFC905_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123947948-1876355 08E08_rep_D_Eburnamonine_(-)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123947948-1876355 08E08_rep_D_Eburnamonine_(-)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150231613-1864713 02G02_rep_B_Verapamil hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150231613-1864713 02G02_rep_B_Verapamil hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD5_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD5_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD6_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case256_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case256_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/002_Urea_Day0_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150407855-1864786 02G01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150407855-1864786 02G01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112824549-1922171 4_A1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112824549-1922171 4_A1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD5_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET90.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET90.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malQ_#1_P5E5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (malQ_#1_P5E5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_30_CNR_52.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_30_CNR_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1421.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1421.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_B4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111834549-1872061 10B07_rep_C_Cefazolin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111834549-1872061 10B07_rep_C_Cefazolin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_09_leg_skin_control_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_09_leg_skin_control_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123136267-1875961 08F07_rep_B_Demecarium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123136267-1875961 08F07_rep_B_Demecarium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD5_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/854.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113129120-1874399 11F01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113129120-1874399 11F01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ2_6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/TAA040_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_E2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/402.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121313006-1866884 04A01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121313006-1866884 04A01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acpH_P3E1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (acpH_P3E1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121928159-1867175 04D10_rep_C_Methylprednisolone,_6-alphab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121928159-1867175 04D10_rep_C_Methylprednisolone,_6-alphab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNS335_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082913/ccms_peak/15NEGMSMS20_25_30eV.mzML at line 689
Premature end of data in tag binary line 12660, line 12660, column 1088597 (15NEGMSMS20_25_30eV.mzML, line 12660)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person16_blood_youth_POS.mzXML at line 689
attributes construct error, line 41, column 101 (Person16_blood_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1E01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/20221212_carryover_test_noISTD_PLASMA_sample01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2F03P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD5_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pssA_#3_P4D4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (pssA_#3_P4D4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125656881-1877117 13F10_rep_A_Tribenosidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125656881-1877117 13F10_rep_A_Tribenosidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_23_RIN_52.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_23_RIN_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113644909-1874614 11B02_rep_C_Auranofina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113644909-1874614 11B02_rep_C_Auranofina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hycC_#1_P3D3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (hycC_#1_P3D3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ushA_P3A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (ushA_P3A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121831974-1879656 15F01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121831974-1879656 15F01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123444578-1876113 08D08_rep_B_Temozolomideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123444578-1876113 08D08_rep_B_Temozolomideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/385.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_66.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151327987-1576364 Batch7_HOP62_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124832625-1862673 03E03_rep_B_Tiratricol,_3,3',5-triiodothyroacetic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124832625-1862673 03E03_rep_B_Tiratricol,_3,3',5-triiodothyroacetic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153341493-1577353 Batch5_NCIH23_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151230714-1924820 3_C11_SNF3_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151230714-1924820 3_C11_SNF3_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample104_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125844241-1877200 13B01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125844241-1877200 13B01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_G7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-056.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-056.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125119500-1862806 03B08_rep_C_Sulfamethoxazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125119500-1862806 03B08_rep_C_Sulfamethoxazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES332.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101906278-1869681 07A04_rep_D_Rofecoxiba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101906278-1869681 07A04_rep_D_Rofecoxiba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122552239-1879991 15F10_rep_D_Nalmefene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122552239-1879991 15F10_rep_D_Nalmefene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151840258-1576623 Batch5_HCC1187_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B05Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH14.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_C7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/463-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_40x_MSMS_2022_1006_Michael_pos-0011.mzML at line 689
Premature end of data in tag binary line 48173, line 48173, column 1899845 (pooled_40x_MSMS_2022_1006_Michael_pos-0011.mzML, line 48173)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201720549-1878045 09B06_rep_C_Halcinonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201720549-1878045 09B06_rep_C_Halcinonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009364_IBD200_E1_A11.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007497_031618-Unst6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_H1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Baicalein_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/001_FC_3_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170209_059ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c7/60b0312bcefc68ff70c21e5fcae888/input_file/MMW4_20170209_059ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121307075-1879410 15B02_rep_A_Acetylcysteinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121307075-1879410 15B02_rep_A_Acetylcysteinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_A7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153047417-1577213 Batch3_647V_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_58.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fucO_P3A4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (fucO_P3A4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113537215-1922506 2_D3_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113537215-1922506 2_D3_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201739930-1882059 16A04_rep_C_Trimebutinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201739930-1882059 16A04_rep_C_Trimebutinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mdtJ_P3E12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (mdtJ_P3E12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E3_id_MSn_positive.mzML at line 21
index 467 is out of bounds for axis 0 with size 467
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/012_CRa_H9M5_M470_C01_K1_high_pos.mzXML at line 689
Premature end of data in tag peaks line 17918, line 17922, column 52717 (012_CRa_H9M5_M470_C01_K1_high_pos.mzXML, line 17922)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152337675-1868102 05A07_rep_D_Methyldopa_(L,-)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152337675-1868102 05A07_rep_D_Methyldopa_(L,-)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/15-4_idMsMs_25min_30eV_GE3_01_4246.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151755690-1576586 Batch3_J82_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114309042-1922904 4_A9_STE2_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114309042-1922904 4_A9_STE2_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085693/ccms_peak/MRM-validation cohort/BC MRM 2nd batch.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc063_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc063_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Bosea_LYD010.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/proY_P4H4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (proY_P4H4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202300941-1878309 10E06_rep_A_Ethoxyquinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202300941-1878309 10E06_rep_A_Ethoxyquinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S110.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S110.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124602111-1862553 03F02_rep_B_Piroxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124602111-1862553 03F02_rep_B_Piroxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GD5_01_17056.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yjeH_#1_P4F11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (yjeH_#1_P4F11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1422.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1422.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082760/ccms_peak/MTBLS198/raw/MTBLS198/JALI118DietC_V1.mzXML at line 689
Premature end of data in tag peaks line 8546, line 8550, column 28141 (JALI118DietC_V1.mzXML, line 8550)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152043809-1867967 05F01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152043809-1867967 05F01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170127_016ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a5/b34ca767bf36ba40305da2d72f89d5/input_file/SH7_20170127_016ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/106-5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153654789-1577512 Batch4_RT4_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190131194247.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_72.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125243082-1876923 12D03_rep_D_Monobenzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125243082-1876923 12D03_rep_D_Monobenzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151259477-1924845 3_C8_SNF3_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151259477-1924845 3_C8_SNF3_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J10_id_MSn_positive.mzML at line 21
index 661 is out of bounds for axis 0 with size 661
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_65.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OAW1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150752127-1924580 2_B2_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150752127-1924580 2_B2_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD1_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125053067-1862785 03G07_rep_C_Griseofulvinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125053067-1862785 03G07_rep_C_Griseofulvinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD2_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEE2_40EV_RA6_01_22596.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100304452-1868912 06H05_rep_D_Fentiazacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100304452-1868912 06H05_rep_D_Fentiazacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiS_P3H8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (thiS_P3H8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170207_050EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/cc/ccdd7ce755d050b33f88de8ac9cb69/input_file/MMW5_20170207_050EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124804847-1862651 03C06_rep_B_Aztreonamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124804847-1862651 03C06_rep_B_Aztreonamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202521566-1878420 10C06_rep_A_Spiramycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202521566-1878420 10C06_rep_A_Spiramycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124324875-1876529 08G05_rep_D_Mercaptopurineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124324875-1876529 08G05_rep_D_Mercaptopurineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/888-B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202535279-1878431 10D01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202535279-1878431 10D01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151100274-1924742 3_E10_SNF3_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151100274-1924742 3_E10_SNF3_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD5_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person3_WBC_POS.mzXML at line 689
attributes construct error, line 38, column 71 (Person3_WBC_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw6_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125452922-1862979 03E07_rep_D_Meclofenamic_acid_sodium_salt_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125452922-1862979 03E07_rep_D_Meclofenamic_acid_sodium_salt_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/117_103_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1152.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M1_id_negative.mzML at line 21
index 241 is out of bounds for axis 0 with size 241
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fadB_P6B9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (fadB_P6B9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_94.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fdoG_P3G4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (fdoG_P3G4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_ISB_2022_1003_Michael_leming_liver_neg-0.0063.mzML at line 689
Premature end of data in tag binary line 22582, line 22582, column 200201 (3_ISB_2022_1003_Michael_leming_liver_neg-0.0063.mzML, line 22582)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152557268-1576974 Batch3_MDAMB157_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_dilute_190201020450.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-007_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_0126_190127171502.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201321192-1877870 09E02_rep_B_Pranoprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201321192-1877870 09E02_rep_B_Pranoprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR17_5h3a.mzML at line 689
Opening and ending tag mismatch: binary line 129346 and binaryDataArray, line 129350, column 31 (pBlateR17_5h3a.mzML, line 129350)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190108_ES_H3K_batch12_repA_173.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122826689-1875811 08G05_rep_A_Mercaptopurineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122826689-1875811 08G05_rep_A_Mercaptopurineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190113_ES_H3K_batch13_repB_189.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/amiB_P3H1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (amiB_P3H1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ7_7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_E6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121027363-1879291 14B06_rep_D_Piperidolate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121027363-1879291 14B06_rep_D_Piperidolate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5A002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argA_P5D6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (argA_P5D6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113541645-1922510 2_C1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113541645-1922510 2_C1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_77.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112739508-1874225 11G07_rep_A_Azacytidine-5b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112739508-1874225 11G07_rep_A_Azacytidine-5b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112611367-1922053 4_E9_GPR1_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112611367-1922053 4_E9_GPR1_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151559044-1576489 Batch7_UACC62_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200919208-1877693 09G04_rep_B_Famprofazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200919208-1877693 09G04_rep_B_Famprofazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/42-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210115_AD_66.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_E6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122730394-1867563 05C09_rep_A_Chlorprothixene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122730394-1867563 05C09_rep_A_Chlorprothixene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_118.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_118.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc1_PBST4_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153030406-1577201 Batch3_SKMEL5_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/860.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR224h3a.mzML at line 689
Opening and ending tag mismatch: binary line 22732 and binaryDataArray, line 22734, column 31 (pBlateR224h3a.mzML, line 22734)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OAW2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_CABIN_sample12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_A8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_A8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/003_Soil_500mMExtra_1_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123122512-1867744 05D03_rep_B_Dobutamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123122512-1867744 05D03_rep_B_Dobutamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152003204-1867934 05H06_rep_C_Amikacin_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152003204-1867934 05H06_rep_C_Amikacin_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114540504-1875044 12B08_rep_A_Pipemidic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114540504-1875044 12B08_rep_A_Pipemidic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Brain_raw files/Lumos_ISAS_Brain_Labeled_3.mzML at line 689
Premature end of data in tag spectrumList line 92, line 25103, column 1 (Lumos_ISAS_Brain_Labeled_3.mzML, line 25103)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092725266-1878968 14F10_rep_B_Nialamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092725266-1878968 14F10_rep_B_Nialamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEE2_30EV_RA6_01_22594.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case129_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case129_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223958046-1870381 01D09_rep_D_Hexamethonium dibromide dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223958046-1870381 01D09_rep_D_Hexamethonium dibromide dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170125_017EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/46/922bfe082302b5c7b437d9c4de46bb/input_file/MMW5_20170125_017EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/25_D24062013T2335_1399CBU_0002_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165704404-2227458 Healthy7.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.MG1_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case216_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case216_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ribF_P3F9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (ribF_P3F9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112620145-1874162 11G04_rep_A_Ciclesonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112620145-1874162 11G04_rep_A_Ciclesonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223756461-1870287 01H07_rep_C_Dibucainea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223756461-1870287 01H07_rep_C_Dibucainea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Debaryomyces_hansenii_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/809.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151530310-1576465 Batch6_CALU1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person25_RBC_elder_POS.mzXML at line 689
attributes construct error, line 41, column 81 (Person25_RBC_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/492-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223955035-2227735 PAT42.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170125_022EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ab/996aaa46c52833c516ba0d29595876/input_file/SH8_20170125_022EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150559770-1924483 1_A4_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150559770-1924483 1_A4_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JVE3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2A08Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130544124-1877523 13B04_rep_C_Pirlindole_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130544124-1877523 13B04_rep_C_Pirlindole_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190119_ES_H3K_batch14_repC_207.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/citX_#1_P5E4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (citX_#1_P5E4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_129.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_129.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153956743-1577665 Batch7_EKVX_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094202/ccms_peak/3DMM_pos_raw/Plate3/20220501_ACN_6.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_3_RESV_0uM_POS.mzXML at line 689
attributes construct error, line 38, column 81 (C2C12_3_RESV_0uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125201613-1862840 03C11_rep_C_Tolbutamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125201613-1862840 03C11_rep_C_Tolbutamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GA9_01_17017.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101100889-1869292 07B01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101100889-1869292 07B01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113903086-1874725 11H02_rep_D_Iopamidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113903086-1874725 11H02_rep_D_Iopamidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E2_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/245.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2F05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085476/raw/AfricanAmerican_02_pos.mzXML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/345.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G3_id_MSn_positive.mzML at line 21
index 678 is out of bounds for axis 0 with size 678
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/031_CRa_H9M5_M470_H01_K3_low_pos.mzXML at line 689
Premature end of data in tag peaks line 14650, line 14654, column 15863 (031_CRa_H9M5_M470_H01_K3_low_pos.mzXML, line 14654)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1584.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1584.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153447958-1868619 06C01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153447958-1868619 06C01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD4_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_48.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H4_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/443.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122326319-1867366 04C04_rep_D_Doxepin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122326319-1867366 04C04_rep_D_Doxepin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_120_3A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113146688-1874413 11D01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113146688-1874413 11D01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170207_057EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/4c/e5138bf554c395c0b276b8aad1fe49/input_file/MMW6_20170207_057EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153716640-1868739 06E11_rep_C_Dicloxacillin_sodium_salt_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153716640-1868739 06E11_rep_C_Dicloxacillin_sodium_salt_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151017871-1865073 02D04_rep_D_Ciprofloxacin hydrochloride monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151017871-1865073 02D04_rep_D_Ciprofloxacin hydrochloride monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Geotrichum_candidum_BW242A_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/856.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-078_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_131.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170127_020ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e2/2c8ec9b818f7aac47b979453342cf6/input_file/SH9_20170127_020ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123432265-1876103 08B01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123432265-1876103 08B01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I4_id_MSn_negative.mzML at line 21
index 306 is out of bounds for axis 0 with size 306
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123312616-1876038 08D05_rep_B_Diclofenac_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123312616-1876038 08D05_rep_B_Diclofenac_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_G7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_F5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123009008-1875891 08B03_rep_A_Mometasone_furoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123009008-1875891 08B03_rep_A_Mometasone_furoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153547218-1868666 06C02_rep_C_Suloctidila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153547218-1868666 06C02_rep_C_Suloctidila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1B03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113229813-1874447 11C04_rep_B_Sulfamonomethoxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113229813-1874447 11C04_rep_B_Sulfamonomethoxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201137394-1877794 09H08_rep_B_Finasteridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201137394-1877794 09H08_rep_B_Finasteridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_98.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150149753-1864681 02A09_rep_B_Amidopyrineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150149753-1864681 02A09_rep_B_Amidopyrineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123451801-1876119 08A03_rep_B_Mevastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123451801-1876119 08A03_rep_B_Mevastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J16_id_MSn_positive.mzML at line 21
index 374 is out of bounds for axis 0 with size 374
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_dilute_190131185256.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiL_#1_P4H12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (thiL_#1_P4H12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_H3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_H3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F15_id_MSn_negative.mzML at line 21
index 320 is out of bounds for axis 0 with size 320
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223731727-1870268 01A02_rep_C_Azaguanine-8b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223731727-1870268 01A02_rep_C_Azaguanine-8b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_62_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_62_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V2_EDTAk3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rutD_P4E7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (rutD_P4E7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100817397-1869162 07D06_rep_A_Trimethadioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100817397-1869162 07D06_rep_A_Trimethadioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person01_blood_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 97 (Person01_blood_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223322011-1870077 01G04_rep_B_Nifedipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223322011-1870077 01G04_rep_B_Nifedipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009587_IBD200_E15_A3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007669_032118-1CRP1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113715442-1922591 3_C8_STE2_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113715442-1922591 3_C8_STE2_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD2_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD3_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/372.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223045731-1869959 01G10_rep_A_Acebutolol hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223045731-1869959 01G10_rep_A_Acebutolol hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw6_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_43_AC+_51.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_E7_id_negative.mzML at line 21
index 285 is out of bounds for axis 0 with size 285
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_176.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_176.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_100.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/172_132.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007548_031618-1CRP2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_P4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124458922-1862387 03F02_rep_A_Piroxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124458922-1862387 03F02_rep_A_Piroxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/774.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122730327-1875767 08F05_rep_A_Carbidopab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122730327-1875767 08F05_rep_A_Carbidopab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD1_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091079/updates/2023-01-19_fatema_saber23_9aa5df91/raw/NEG_23.mzML at line 689
Opening and ending tag mismatch: binary line 42527 and spectrum, line 42528, column 20 (NEG_23.mzML, line 42528)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123347989-1876067 08D10_rep_B_Celiprolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123347989-1876067 08D10_rep_B_Celiprolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control59_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control59_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101242122-1869373 07G06_rep_B_Tetramisole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101242122-1869373 07G06_rep_B_Tetramisole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHK05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/PED2_30EV_RA7_01_22530.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GE5_01_16962.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0019_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_77_RIN_30.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_77_RIN_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/523-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS206P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201547065-1877975 09B10_rep_C_6-Furfurylaminopurineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201547065-1877975 09B10_rep_C_6-Furfurylaminopurineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ5_8 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H17_id_MSn_negative.mzML at line 21
index 290 is out of bounds for axis 0 with size 290
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H5_id_MSn_negative.mzML at line 21
index 325 is out of bounds for axis 0 with size 325
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113448929-1874522 11D10_rep_C_Ganciclovira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113448929-1874522 11D10_rep_C_Ganciclovira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_112b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_H6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR27_5h2a.mzML at line 689
Specification mandates value for attribute co, line 274890, column 36 (pMIBSDR27_5h2a.mzML, line 274890)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhmD_P4D3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (rhmD_P4D3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_91.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-cc2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082760/ccms_peak/MTBLS198/raw/MTBLS198/JALI307_DietB_V4.mzXML at line 689
Premature end of data in tag peaks line 9021, line 9025, column 3565 (JALI307_DietB_V4.mzXML, line 9025)
Error processing file: /data/datasets/server/MassIVE/MSV000085357/peak/Peak_List_Files/Lipidomics_Samples/TAM_IMS_negvel_657_06Feb17_Lola-WCSH7905.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (TAM_IMS_negvel_657_06Feb17_Lola-WCSH7905.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095819/raw/202312_207_PA01_10ppb_1uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD1_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD2_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-115_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G06Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153624832-1577487 Batch4_SKOV3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_C5_id_MSn_negative_2.mzML at line 21
index 261 is out of bounds for axis 0 with size 261
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151741514-1576575 Batch3_NCIH2228_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (24).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112428826-1921964 3_F10_GPR1_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112428826-1921964 3_F10_GPR1_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007539_031618-1Thr6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30176 - GI-19-061.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223704496-1870247 01H02_rep_C_Todralazine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223704496-1870247 01H02_rep_C_Todralazine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pheA_#2_P5E5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (pheA_#2_P5E5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125613336-1863044 03A04_rep_D_Chlorzoxazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125613336-1863044 03A04_rep_D_Chlorzoxazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_AP_4.mzXML at line 689
Premature end of data in tag msRun line 5, line 2881, column 1 (L_AP_4.mzXML, line 2881)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acnA_#1_P3C1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (acnA_#1_P3C1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/28.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007642_032118-0.01Thr6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00072571.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112020386-1921748 2_A1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112020386-1921748 2_A1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113849236-1874714 11E07_rep_D_Ethynylestradiol_3-methyl_ethera.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113849236-1874714 11E07_rep_D_Ethynylestradiol_3-methyl_ethera.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0019_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0019_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114355710-1874962 12E04_rep_A_Xamoterol_hemifumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114355710-1874962 12E04_rep_A_Xamoterol_hemifumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101830129-1869652 07E10_rep_D_Mesoridazine_besylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101830129-1869652 07E10_rep_D_Mesoridazine_besylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D8_id_negative.mzML at line 21
index 257 is out of bounds for axis 0 with size 257
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170207_053EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/40/2ca231cabfb37bd5a203d639ac202d/input_file/MMW3_20170207_053EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/655.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083774/ccms_peak/Metabolomics/Pos_60.mzML at line 21
index 453 is out of bounds for axis 0 with size 453
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101843837-1869663 07H03_rep_D_Selegiline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101843837-1869663 07H03_rep_D_Selegiline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_E12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate29/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113809522-1922638 3_H8_STE2_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113809522-1922638 3_H8_STE2_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_44_CNR_15.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_44_CNR_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151652707-1925039 4_H3_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151652707-1925039 4_H3_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223653917-1870239 01B08_rep_C_Levodopaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223653917-1870239 01B08_rep_C_Levodopaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125848958-1863173 04F07_rep_A_Acemetacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125848958-1863173 04F07_rep_A_Acemetacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092627/ccms_peak/Raw_Spectrum_Files/ALZ_CBM_P_E4E4_AD_31Jan18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152028812-1867955 05E04_rep_C_Colchicineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152028812-1867955 05E04_rep_C_Colchicineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0017_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0017_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202215069-1882274 16C09_rep_D_Actaritb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202215069-1882274 16C09_rep_D_Actaritb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124827561-1862669 03G01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124827561-1862669 03G01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR124h3a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 124692, column 82 (pBlateR124h3a.mzML, line 124692)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007613_032118-Unst2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123530346-1876150 08C03_rep_C_Camylofine_chlorhydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123530346-1876150 08C03_rep_C_Camylofine_chlorhydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121434453-1879476 15C03_rep_A_Dopamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121434453-1879476 15C03_rep_A_Dopamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201821331-1882091 16C05_rep_C_Nitazoxanidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201821331-1882091 16C05_rep_C_Nitazoxanidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_sample11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152803668-1868306 06E10_rep_A_Pilocarpine_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152803668-1868306 06E10_rep_A_Pilocarpine_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cydC_#3_P6C5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (cydC_#3_P6C5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/811.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S28.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S28.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093124982-1879152 14A11_rep_C_Quinethazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093124982-1879152 14A11_rep_C_Quinethazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111935840-1872590 10D09_rep_C_Ribostamycin_sulfate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111935840-1872590 10D09_rep_C_Ribostamycin_sulfate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114007671-1874777 11E11_rep_D_Equilinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114007671-1874777 11E11_rep_D_Equilinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/021_CRa_H9M5_M470_L03_K2_high_pos.mzXML at line 689
Premature end of data in tag peaks line 19115, line 19119, column 40437 (021_CRa_H9M5_M470_L03_K2_high_pos.mzXML, line 19119)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121529454-1879516 15E03_rep_A_Cyclophosphamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121529454-1879516 15E03_rep_A_Cyclophosphamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_E5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190114_ES_H3K_batch13_repC_196.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152112688-1576746 Batch1_MDAMB436_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153353881-1577363 Batch4_NCIH1869_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_G4_id_positive.mzML at line 21
index 388 is out of bounds for axis 0 with size 388
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165755637-2227505 PAT48.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_136.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100755940-1869145 07E11_rep_A_Troloxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100755940-1869145 07E11_rep_A_Troloxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124200369-1862245 03C11_rep_A_Tolbutamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124200369-1862245 03C11_rep_A_Tolbutamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121653590-1879581 15D01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121653590-1879581 15D01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-126_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152934784-1577157 Batch3_PANC0327_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_13_CNR_30.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_13_CNR_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std d 030a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100352753-1868950 06A05_rep_D_Idebenoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100352753-1868950 06A05_rep_D_Idebenoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122044233-1879756 15C04_rep_B_Cefdinira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122044233-1879756 15C04_rep_B_Cefdinira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151113785-1924754 3_H2_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151113785-1924754 3_H2_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112957455-1922216 1_A4_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112957455-1922216 1_A4_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1093.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K17_id_MSn_positive.mzML at line 21
index 412 is out of bounds for axis 0 with size 412
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/018_CRa_H9M5_M470_Blank_05_high_pos.mzXML at line 689
Premature end of data in tag peaks line 18868, line 18872, column 15863 (018_CRa_H9M5_M470_Blank_05_high_pos.mzXML, line 18872)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/prpB_#2_P4G7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (prpB_#2_P4G7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw3_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P14_id_negative.mzML at line 21
index 269 is out of bounds for axis 0 with size 269
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130726479-1877604 13D02_rep_C_Gliquidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130726479-1877604 13D02_rep_C_Gliquidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1015.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_03_858_prot_20_IMS_27Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lipA_#1_P4D5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (lipA_#1_P4D5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124855619-1876753 12F01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124855619-1876753 12F01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153810763-1868782 06A08_rep_C_Adamantamine_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153810763-1868782 06A08_rep_C_Adamantamine_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122650717-1867531 05D11_rep_A_Droperidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122650717-1867531 05D11_rep_A_Droperidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_blood_4h_POS.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer2_blood_4h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151714049-1576552 Batch7_RXF393_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091817201-1878540 13H09_rep_D_Methyldopate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091817201-1878540 13H09_rep_D_Methyldopate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153142365-1577257 Batch4_NCIH1651_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151531509-1576466 Batch7_CORL23_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/495.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_3_P_rep_2_B-C5_1_5657.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100326579-1868929 06E08_rep_D_Hydrocortisone_basea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100326579-1868929 06E08_rep_D_Hydrocortisone_basea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100533087-1869030 06B08_rep_D_Lamivudineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100533087-1869030 06B08_rep_D_Lamivudineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ttdA_P3H4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (ttdA_P3H4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125314783-1862899 03A06_rep_C_Ethosuximideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125314783-1862899 03A06_rep_C_Ethosuximideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yiaM_P3C3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (yiaM_P3C3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2H01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_C7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR124h2b.mzML at line 689
Opening and ending tag mismatch: spectrum line 211430 and binary, line 211438, column 2610 (pBpumR124h2b.mzML, line 211438)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/662.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151543534-1576476 Batch7_UACC62_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100246950-1868898 06C09_rep_D_Roxatidine_Acetate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100246950-1868898 06C09_rep_D_Roxatidine_Acetate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151021706-1865076 02F03_rep_D_Loxapine succinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151021706-1865076 02F03_rep_D_Loxapine succinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample078.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121355916-1866916 04E01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121355916-1866916 04E01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-31d.mzXML at line 689
Premature end of data in tag peaks line 8776, line 8780, column 7670 (YnYn-31d.mzXML, line 8780)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample135_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114714593-1875116 12D03_rep_B_Monobenzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114714593-1875116 12D03_rep_B_Monobenzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1371.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1371.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1010.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_62.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_62.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210923_LKM_beads_timecourse_5min_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087069/ccms_peak/BRB Liquid Convert neg/BBR_R17500_N10_I10e6_E60_neg_06292020.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (BBR_R17500_N10_I10e6_E60_neg_06292020.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/179_140.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR23h2a.mzML at line 689
Specification mandates value for attribute cvRe514, line 80737, column 27 (pMIBSDR23h2a.mzML, line 80737)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LIM2_40EV_RA8_01_22539.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3G06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111623488-1921545 1_E7_GAP1_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111623488-1921545 1_E7_GAP1_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET107.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET107.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alsA_P4D2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (alsA_P4D2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200556014-1881537 16D02_rep_A_Aminacrinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200556014-1881537 16D02_rep_A_Aminacrinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD4_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152224924-1576803 Batch2_T47D_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2J007.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112906617-1874294 11H06_rep_A_Reserpinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112906617-1874294 11H06_rep_A_Reserpinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201718001-1878043 09G09_rep_C_Benzethonium_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201718001-1878043 09G09_rep_C_Benzethonium_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_81.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_3_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_A_pos_IMS1_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/GNPS-Nudibranch/converted coba2/200609_sample_36.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_74.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample229_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_18091336_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151245958-1576329 Batch5_HCC1187_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_C2_id_positive.mzML at line 21
index 357 is out of bounds for axis 0 with size 357
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124025889-1876385 08E07_rep_D_Rimantadine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124025889-1876385 08E07_rep_D_Rimantadine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222734421-1869815 01H07_rep_A_Dibucainea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222734421-1869815 01H07_rep_A_Dibucainea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125922149-1863201 04H11_rep_A_Fluphenazine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125922149-1863201 04H11_rep_A_Fluphenazine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d8_286_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag peaks line 42320, line 42324, column 15853 (SysVirol_IFT001_Cal04RG_d8_286_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 42324)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_367.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD5_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_90.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093476/raw/051722_HG_LAIBAN3_B2_T2.mzXML at line 689
Premature end of data in tag peaks line 13553, line 13557, column 94819 (051722_HG_LAIBAN3_B2_T2.mzXML, line 13557)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V2_LH.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/175-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123211795-1875990 08A02_rep_B_Ziprasidone__Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123211795-1875990 08A02_rep_B_Ziprasidone__Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201710007-1882036 16B07_rep_C_Tegafurb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201710007-1882036 16B07_rep_C_Tegafurb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_A5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151139412-1576274 Batch5_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E5_id_negative.mzML at line 21
index 279 is out of bounds for axis 0 with size 279
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_23.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_23.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114229797-1922869 4_G4_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114229797-1922869 4_G4_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R131_5h2a.mzML at line 689
Specification mandates value for attribute con, line 66281, column 35 (pBlichMO17R131_5h2a.mzML, line 66281)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112143153-1873556 10H10_rep_D_Pridinol_methanesulfonate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112143153-1873556 10H10_rep_D_Pridinol_methanesulfonate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152058772-1576735 Batch1_NCIH1975_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GC9_01_17170.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/allC_P4D1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (allC_P4D1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007604_031718-buffer ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150917153-1865026 02G11_rep_D_Dihydroergotamine tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150917153-1865026 02G11_rep_D_Dihydroergotamine tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112956323-1922215 1_H7_IZH2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112956323-1922215 1_H7_IZH2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_plasma_24h_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer4_plasma_24h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152545155-1576964 Batch1_CALU6_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/290.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152133037-1868007 05H01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152133037-1868007 05H01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170125_059EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/70/016327239c4261218a81cef4d32657/input_file/SH9_20170125_059EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111907486-1921686 2_C7_GAP1_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111907486-1921686 2_C7_GAP1_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/037_CRa_H9M5_M470_Blank_09_low_pos.mzXML at line 689
Premature end of data in tag peaks line 15828, line 15832, column 3575 (037_CRa_H9M5_M470_Blank_09_low_pos.mzXML, line 15832)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/872.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123819898-1876284 08D05_rep_C_Diclofenac_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123819898-1876284 08D05_rep_C_Diclofenac_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151001921-1924692 3_C1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151001921-1924692 3_C1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200943894-1881705 16E08_rep_A_Pregabalina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200943894-1881705 16E08_rep_A_Pregabalina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_C8_id_positive.mzML at line 21
index 312 is out of bounds for axis 0 with size 312
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR131_5h2aT2.mzML at line 689
attributes construct error, line 190549, column 90 (pBlateR131_5h2aT2.mzML, line 190549)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case51_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case51_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_32.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_32.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD4_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C11_id_negative.mzML at line 21
index 260 is out of bounds for axis 0 with size 260
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD1_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124037447-1876394 08H07_rep_D_Penciclovira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124037447-1876394 08H07_rep_D_Penciclovira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123623265-1876192 08A02_rep_C_Ziprasidone__Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123623265-1876192 08A02_rep_C_Ziprasidone__Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-067_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152649519-1868249 06B07_rep_A_Bacampicillin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152649519-1868249 06B07_rep_A_Bacampicillin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224139887-1870459 01D02_rep_D_Chloramphenicola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224139887-1870459 01D02_rep_D_Chloramphenicola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200911200-1877687 09F04_rep_B_Promazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200911200-1877687 09F04_rep_B_Promazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112608787-1874153 11F05_rep_A_Roxithromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112608787-1874153 11F05_rep_A_Roxithromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_O11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170125_047EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/23/ea4b26cb92960ae12a1bade9dbd01b/input_file/MMW5_20170125_047EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201426385-1881916 16H03_rep_C_Pemetrexed_disodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201426385-1881916 16H03_rep_C_Pemetrexed_disodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101418383-1869450 07B10_rep_C_Propafenone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101418383-1869450 07B10_rep_C_Propafenone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C2_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080030/ccms_peak/Forensic_study_80_volunteers/Forensic_Objects_mzXML/Forensic_Objects_plate_F_mzXML/Sample/.DS_Store at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121336758-1866902 04A05_rep_B_Glutethimide,_para-aminoa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121336758-1866902 04A05_rep_B_Glutethimide,_para-aminoa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ3_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114111760-1922799 4_B2_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114111760-1922799 4_B2_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086152/peak/Peak_List_Files/WSU_Sleep_SC_QC_L_055_POS_20Aug18_Brandi-WCSH7803.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (WSU_Sleep_SC_QC_L_055_POS_20Aug18_Brandi-WCSH7803.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124017004-1876378 08F04_rep_D_Diosmina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124017004-1876378 08F04_rep_D_Diosmina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223700417-1870244 01C05_rep_C_Norethynodrelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223700417-1870244 01C05_rep_C_Norethynodrelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ROO2_MS_RA3_01_22562.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisM_#1_P3H8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (hisM_#1_P3H8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152100097-1576736 Batch1_HCC38_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007729_032218-buffer ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mtn_#1_P5H10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (mtn_#1_P5H10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113850730-1922674 3_E1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113850730-1922674 3_E1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wbbK_P4A3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (wbbK_P4A3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_115_3B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114852474-1875194 12H04_rep_B_(R)-(+)-Atenolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114852474-1875194 12H04_rep_B_(R)-(+)-Atenolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/666.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d1_283_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 39613, column 1 (SysVirol_IFT001_Cal04RG_d1_283_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 39613)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150315326-1924344 1_F5_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150315326-1924344 1_F5_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152219941-1576799 Batch2_VMCUB1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122045313-1867236 04C10_rep_C_Clomipramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122045313-1867236 04C10_rep_C_Clomipramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_C12_id_negative.mzML at line 21
index 250 is out of bounds for axis 0 with size 250
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_163.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_163.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person27_plasma_youth_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person27_plasma_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4E06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122939090-1875868 08B09_rep_A_Ropinirole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122939090-1875868 08B09_rep_A_Ropinirole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBacsR231_5h3a.mzML at line 689
expected '>', line 253663, column 18 (pBacsR231_5h3a.mzML, line 253663)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202112497-1882225 16F03_rep_D_Indinavir_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202112497-1882225 16F03_rep_D_Indinavir_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113449369-1922465 2_H2_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113449369-1922465 2_H2_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K13_id.mzML at line 21
index 491 is out of bounds for axis 0 with size 491
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151737902-1576572 Batch7_RXF393_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_87.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094151/raw/Bruker QTof micrOTOF QII d7-d28_mzML/MeOH_blank4.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GB10_01_12090.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc016_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc016_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152501695-1576928 Batch2_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223341765-1870092 01E07_rep_B_Naphazoline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223341765-1870092 01E07_rep_B_Naphazoline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET129.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET129.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_351.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_20_NOR_51.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_20_NOR_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-37d.mzXML at line 689
Premature end of data in tag msRun line 5, line 9466, column 1 (YnYn-37d.mzXML, line 9466)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121513040-1879504 15A03_rep_A_Anastrozolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121513040-1879504 15A03_rep_A_Anastrozolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S05_0126_190128183654.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/437.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223715311-1870255 01A10_rep_C_Hydrochlorothiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223715311-1870255 01A10_rep_C_Hydrochlorothiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223609246-1870205 01G05_rep_C_Chlorpromazine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223609246-1870205 01G05_rep_C_Chlorpromazine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1C3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1C3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M21_id_MSn_negative.mzML at line 21
index 310 is out of bounds for axis 0 with size 310
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130054791-1863277 04A11_rep_A_Alprenolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130054791-1863277 04A11_rep_A_Alprenolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B23_id_MSn_negative.mzML at line 21
index 312 is out of bounds for axis 0 with size 312
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150839799-1864997 02B07_rep_D_Guanabenz acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150839799-1864997 02B07_rep_D_Guanabenz acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD079_P1-A-8_03_2408.mzML at line 88
Invalid base64-encoded string: number of data characters (3134129) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_A4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person27_blood_youth_POS.mzXML at line 689
attributes construct error, line 41, column 83 (Person27_blood_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ3_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_29_CNR_53.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_29_CNR_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153258270-1577318 Batch5_OVCAR5_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_17091608_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1325.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1325.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153718556-1577532 Batch4_NCIH810_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_B3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130641410-1877568 13D08_rep_C_Fluticasone_propionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130641410-1877568 13D08_rep_C_Fluticasone_propionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125320845-1862904 03E09_rep_C_Trimethoprim_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125320845-1862904 03E09_rep_C_Trimethoprim_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202336016-1878337 10B10_rep_A_Levonordefrinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202336016-1878337 10B10_rep_A_Levonordefrinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_G2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1274.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1274.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/blank_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224242196-1870508 01D06_rep_D_Dapsoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224242196-1870508 01D06_rep_D_Dapsoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_QC3.mzXML at line 689
Premature end of data in tag peaks line 14123, line 14127, column 3565 (L_QC3.mzXML, line 14127)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR17_5h1a.mzML at line 689
Opening and ending tag mismatch: binary line 216904 and spectrum, line 216957, column 20 (pMIBSDR17_5h1a.mzML, line 216957)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153928319-1577641 Batch6_NCIH1299_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L13_id_MSn_positive.mzML at line 21
index 515 is out of bounds for axis 0 with size 515
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202302151-1878310 10C10_rep_A_Isoetharine_mesylate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202302151-1878310 10C10_rep_A_Isoetharine_mesylate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_mock_d1_291_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 32287, column 1 (SysVirol_IFT001_mock_d1_291_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 32287)
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/PDI-flfl-plasma-VLDL-27-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170125_020EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/19/42cf03eb057790c14e436b9a3a43d1/input_file/MMW5_20170125_020EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G19_id_MSn_positive.mzML at line 21
index 420 is out of bounds for axis 0 with size 420
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124304306-1862296 03F01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124304306-1862296 03F01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112809729-1922158 4_H8_GPR1_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112809729-1922158 4_H8_GPR1_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125233943-1876916 12E04_rep_D_Xamoterol_hemifumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125233943-1876916 12E04_rep_D_Xamoterol_hemifumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G03P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153631432-1868702 06G03_rep_C_Cefiximea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153631432-1868702 06G03_rep_C_Cefiximea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223055281-1869966 01F05_rep_A_Mefenamic acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223055281-1869966 01F05_rep_A_Mefenamic acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153806703-1577572 Batch6_NCIH82_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112610118-1874154 11D06_rep_A_Zolmitriptana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112610118-1874154 11D06_rep_A_Zolmitriptana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113602394-1922528 2_B1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113602394-1922528 2_B1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114249287-1874908 12C05_rep_A_Metyraponea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114249287-1874908 12C05_rep_A_Metyraponea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/035_CRa_H9M5_M470_C01_K2_high_pos.mzXML at line 689
Premature end of data in tag peaks line 19723, line 19727, column 40437 (035_CRa_H9M5_M470_C01_K2_high_pos.mzXML, line 19727)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/osmF_P3C7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (osmF_P3C7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150857294-1924636 2_H7_RGT2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150857294-1924636 2_H7_RGT2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_93.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_93.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223611774-1870207 01C02_rep_C_Sulfaphenazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223611774-1870207 01C02_rep_C_Sulfaphenazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD1_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_18.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_18.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201236125-1881833 16D06_rep_B_Cefpiramidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201236125-1881833 16D06_rep_B_Cefpiramidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person28_RBC_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 81 (Person28_RBC_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/-ve_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H6_id_MSn_positive.mzML at line 21
index 367 is out of bounds for axis 0 with size 367
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB7A01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_07_674_prot_45_IMS_15Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/595.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092532679-1878881 14G01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092532679-1878881 14G01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_B5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.gris_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control37_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control37_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092143509-1878701 14A07_rep_A_Repaglinideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092143509-1878701 14A07_rep_A_Repaglinideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202124337-1882234 16C02_rep_D_(R)-Duloxetine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202124337-1882234 16C02_rep_D_(R)-Duloxetine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_17_Dorsal_skin_CMC_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_17_Dorsal_skin_CMC_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2E07Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151356514-1576388 Batch6_CALU3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113526292-1922497 2_A5_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113526292-1922497 2_A5_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8H04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112258369-1873616 10D06_rep_D_Piperacillin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112258369-1873616 10D06_rep_D_Piperacillin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_91.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_91.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30077 - GI-14-760.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_4_Liver_HO_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 86 (Mouse_4_Liver_HO_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152900592-1577128 Batch3_A549_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201019411-1877737 09D06_rep_B_Oxacillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201019411-1877737 09D06_rep_B_Oxacillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_115_3A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/418.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_171.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125048799-1876838 12H06_rep_C_Florfenicolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125048799-1876838 12H06_rep_C_Florfenicolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123453034-1876120 08F01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123453034-1876120 08F01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151924334-1576660 Batch7_NCIH209_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114939063-1875232 12B03_rep_B_Flubendazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114939063-1875232 12B03_rep_B_Flubendazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_H6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L14_id_MSn_positive.mzML at line 21
index 522 is out of bounds for axis 0 with size 522
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150302059-1924333 1_B10_RGT2_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150302059-1924333 1_B10_RGT2_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yejB_#2_P5A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (yejB_#2_P5A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/menE_#2_P5B1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (menE_#2_P5B1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153920092-1577634 Batch6_K562_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_036EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/1b/471d327a7784decbf0ffd082851372/input_file/QC_20170207_036EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ1_7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J17_id_MSn_negative.mzML at line 21
index 358 is out of bounds for axis 0 with size 358
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/057_59.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088606/peak/210116_AR_04_AGE016_A07_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_2_P4A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (ctrl_2_P4A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_199.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD3_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GF2_01_16847.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152406902-1868124 05E07_rep_D_Ambroxol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152406902-1868124 05E07_rep_D_Ambroxol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_E4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151637105-1576521 Batch7_SF295_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114811915-1875161 12F05_rep_B_Flucytosineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114811915-1875161 12F05_rep_B_Flucytosineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bisC_P3D4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (bisC_P3D4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122911105-1875846 08A10_rep_A_Entacaponea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122911105-1875846 08A10_rep_A_Entacaponea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L12_id_MSn_positive.mzML at line 21
index 701 is out of bounds for axis 0 with size 701
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_G2_id_positive.mzML at line 21
index 341 is out of bounds for axis 0 with size 341
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_40_AC+_48.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/QC_10_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114221344-1874885 11B02_rep_D_Auranofinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114221344-1874885 11B02_rep_D_Auranofinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112329686-1873641 10G11_rep_D_Cycloheximidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112329686-1873641 10G11_rep_D_Cycloheximidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/255.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F4_id_MSn_positive.mzML at line 21
index 675 is out of bounds for axis 0 with size 675
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD2_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112130455-1873546 10G01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112130455-1873546 10G01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_F1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202005555-1878171 09D07_rep_D_Beta-Escinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202005555-1878171 09D07_rep_D_Beta-Escinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113752579-1874668 11C09_rep_C_Viloxazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113752579-1874668 11C09_rep_C_Viloxazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092052869-1878662 14D02_rep_A_Imidureaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092052869-1878662 14D02_rep_A_Imidureaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092457344-1878853 14A09_rep_B_Piperacetazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092457344-1878853 14A09_rep_B_Piperacetazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153829514-1868797 06A02_rep_C_Testosterone_propionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153829514-1868797 06A02_rep_C_Testosterone_propionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111447702-1871500 10A02_rep_B_Althiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111447702-1871500 10A02_rep_B_Althiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tesB_P5F12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (tesB_P5F12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7B06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_C12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C11_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122903004-1867637 05E06_rep_A_Brinzolamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122903004-1867637 05E06_rep_A_Brinzolamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_D2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7G04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG13.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OAD3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argA_P5D6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (argA_P5D6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET93.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET93.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201209264-1877817 09E11_rep_B_Irinotecan_hydrochloride_trihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201209264-1877817 09E11_rep_B_Irinotecan_hydrochloride_trihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151535113-1576469 Batch6_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person3_WBC_NEG.mzXML at line 689
attributes construct error, line 38, column 71 (Person3_WBC_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150419601-1864795 02B11_rep_C_Nocodazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150419601-1864795 02B11_rep_C_Nocodazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153346556-1577357 Batch4_NCIH2126_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_B9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007545_031618-1CRP1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113056049-1922262 1_F2_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113056049-1922262 1_F2_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150747368-1924576 2_E9_RGT2_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150747368-1924576 2_E9_RGT2_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4F01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C6_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112309377-1873625 10D11_rep_D_Pipenzolate_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112309377-1873625 10D11_rep_D_Pipenzolate_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person17_plasma_youth_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person17_plasma_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/007_1029_1_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111919255-1872577 10F10_rep_C_Zomepirac_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111919255-1872577 10F10_rep_C_Zomepirac_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180505_ES_H3K_batch4_repC_54.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlich1001R231_5h1a.mzML at line 689
Opening and ending tag mismatch: scanList line 249730 and binary, line 249732, column 469 (pBlich1001R231_5h1a.mzML, line 249732)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I21_id_MSn_negative.mzML at line 21
index 299 is out of bounds for axis 0 with size 299
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130112808-1863292 04C01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130112808-1863292 04C01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223935200-2227718 PAT50.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB1B07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person10_blood_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 101 (Person10_blood_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hC2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hC2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000078776/ccms_peak/Spectra_WT_MT_NT_RAW/140424_ACN+BOC.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114645979-1875094 12A06_rep_B_Dolasetron_mesilatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114645979-1875094 12A06_rep_B_Dolasetron_mesilatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122133482-1879793 15H05_rep_C_Rufloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122133482-1879793 15H05_rep_C_Rufloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/preT_P3C1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (preT_P3C1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S55.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S55.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glf_#1_P3F7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (glf_#1_P3F7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113826014-1874695 11F11_rep_C_Methylhydantoin-5-(L)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113826014-1874695 11F11_rep_C_Methylhydantoin-5-(L)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112621437-1874163 11G04_rep_A_Ciclesonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112621437-1874163 11G04_rep_A_Ciclesonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151837820-1867866 05A11_rep_C_Bisoprolol_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151837820-1867866 05A11_rep_C_Bisoprolol_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD6_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_10_liver_RESV_skin_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_10_liver_RESV_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122851540-1867628 05H03_rep_A_Ketanserin_tartrate_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122851540-1867628 05H03_rep_A_Ketanserin_tartrate_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113920019-1922700 3_G1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113920019-1922700 3_G1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pncB_P3D9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (pncB_P3D9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0016_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0016_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112417227-1921954 3_A9_GPR1_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112417227-1921954 3_A9_GPR1_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122329899-1879882 15A02_rep_C_Buspirone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122329899-1879882 15A02_rep_C_Buspirone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7G07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaQ_#2_P4A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (waaQ_#2_P4A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD6_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201409235-1881903 16G05_rep_B_Lomerizine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201409235-1881903 16G05_rep_B_Lomerizine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114331412-1874942 12C03_rep_A_Abacavir_Sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114331412-1874942 12C03_rep_A_Abacavir_Sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J16_id_MSn_negative.mzML at line 21
index 371 is out of bounds for axis 0 with size 371
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210112_AD_40.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_0123_190123210142.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/moaC_P4G1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (moaC_P4G1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xylB_#5_P4C8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (xylB_#5_P4C8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113500601-1922475 2_D9_IZH2_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113500601-1922475 2_D9_IZH2_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/adphepDD-adphepLD_hldD_P4F12_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024881 (adphepDD-adphepLD_hldD_P4F12_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1790.mzML at line 689
AttValue: " or ' expected, line 196186, column 59 (04_05_2012_1790.mzML, line 196186)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089570/raw/fabiansfd/Sample/GN-01-G.mzML at line 689
Specification mandates value for attribute accessigTDZ9rGZFGQPVC, line 469165, column 52 (GN-01-G.mzML, line 469165)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152239911-1576815 Batch2_NCIH522_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000088606/ccms_peak/210116_AR_11_23A_F10_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample151_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aceB_P3H9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (aceB_P3H9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093215407-1879193 14C09_rep_C_Thiethylperazine_dimalate_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093215407-1879193 14C09_rep_C_Thiethylperazine_dimalate_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (30).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bioA_P3F9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (bioA_P3F9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082718/ccms_peak/ST000666/EX00376-lipidomics/Raw data/NEG/20141119_Authentic.mzXML at line 689
Unescaped '<' not allowed in attributes values, line 762, column 1977 (20141119_Authentic.mzXML, line 762)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151654009-1925040 4_H3_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151654009-1925040 4_H3_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201646018-1882018 16G02_rep_C_Epirubicin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201646018-1882018 16G02_rep_C_Epirubicin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170127_033ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/fd/8f0bebb04a268e66b72e7e622f88ae/input_file/SH9_20170127_033ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET47.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET47.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_E2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_rerun_BB1_01_11591.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control231_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control231_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GA10_01_11831.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_57.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gatZ_P3D6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (gatZ_P3D6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_19032112_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113039700-1922248 1_A8_IZH2_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113039700-1922248 1_A8_IZH2_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_5_Dorsal_skin_HO_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_5_Dorsal_skin_HO_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101650104-1869570 07A10_rep_C_Ceftazidime_pentahydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101650104-1869570 07A10_rep_C_Ceftazidime_pentahydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153935365-1577647 Batch6_SF268_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_57_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_57_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_plasma_0h_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer4_plasma_0h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hA1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hA1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F6_id_MSn_negative.mzML at line 21
index 321 is out of bounds for axis 0 with size 321
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123233655-1867801 05D11_rep_B_Droperidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123233655-1867801 05D11_rep_B_Droperidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G7_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD1_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/240.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/001_Nitrate_Day4_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125248227-1876927 12A09_rep_D_Promethazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125248227-1876927 12A09_rep_D_Promethazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wbbK_P4A3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (wbbK_P4A3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P9_id_MSn_negative.mzML at line 21
index 363 is out of bounds for axis 0 with size 363
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145655507-1863967 02A04_rep_A_Edrophonium chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145655507-1863967 02A04_rep_A_Edrophonium chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-138_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240408_pluskal_enammol_5002_B1_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_85.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_21_AC+_53.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/COR1_30EV_RA7_01_22683.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J19_id_MSn_negative.mzML at line 21
index 294 is out of bounds for axis 0 with size 294
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113422661-1922442 2_E10_IZH2_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113422661-1922442 2_E10_IZH2_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120919782-1879240 14D06_rep_D_(R)-Propranolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120919782-1879240 14D06_rep_D_(R)-Propranolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074713.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample153.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153444096-1577404 Batch4_SW780_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201218_LKM_no_ACN_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sseA_#1_P5F6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (sseA_#1_P5F6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152737769-1868286 06F07_rep_A_Meclocycline_sulfosalicylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152737769-1868286 06F07_rep_A_Meclocycline_sulfosalicylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121940856-1867185 04F04_rep_C_Glafenine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121940856-1867185 04F04_rep_C_Glafenine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S01_0126_190127164148.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dcuC_#3_P4D10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (dcuC_#3_P4D10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/006_Soil_500mMIntra_1_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD5_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/cal_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_99.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200923151-1877696 09C01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200923151-1877696 09C01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101805087-1869632 07B06_rep_D_Terconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101805087-1869632 07B06_rep_D_Terconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_209.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD5_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093476/raw/051322_HG_SIWANGANG_420_A1_DDA1.mzXML at line 689
Premature end of data in tag peaks line 14632, line 14636, column 33308 (051322_HG_SIWANGANG_420_A1_DDA1.mzXML, line 14636)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD2_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L11_id.mzML at line 21
index 563 is out of bounds for axis 0 with size 563
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNQ766_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114503071-1875017 12B03_rep_A_Flubendazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114503071-1875017 12B03_rep_A_Flubendazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/apaH_P4C2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (apaH_P4C2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112918380-1874303 11H10_rep_A_Rabeprazole_Sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112918380-1874303 11H10_rep_A_Rabeprazole_Sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_E5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223913751-2227699 PAT43.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E13_id_MSn_positive.mzML at line 21
index 392 is out of bounds for axis 0 with size 392
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_M_pos_IMS1_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000081955/peak/HFZ_54_samples_201606/HNFZ-2_1.mzXML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_C4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112823593-1874260 11D10_rep_A_Ganciclovira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112823593-1874260 11D10_rep_A_Ganciclovira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082718/ccms_peak/ST000666/EX00376-lipidomics/Raw data/POS/20141119_Test.mzXML at line 689
expected '>', line 23201, column 17 (20141119_Test.mzXML, line 23201)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170209_026ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b3/de8fd3cb38b070955697f6aaac0f23/input_file/MMW6_20170209_026ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/425.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_27_2022_1003_Michael_leming_liver_neg-0.0051.mzML at line 689
Premature end of data in tag binary line 13656, line 13656, column 886381 (3_27_2022_1003_Michael_leming_liver_neg-0.0051.mzML, line 13656)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125253530-1862882 03D08_rep_C_Metaraminol_bitartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125253530-1862882 03D08_rep_C_Metaraminol_bitartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152901786-1577129 Batch3_A549_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hycD_P3B12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (hycD_P3B12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086252/ccms_peak/PF077_pos/200728_LQ_PPF077_445962Z01_A4_pos.mzML at line 689
Extra content at the end of the document, line 642737, column 1 (200728_LQ_PPF077_445962Z01_A4_pos.mzML, line 642737)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ghxQ_#1_P5G10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (ghxQ_#1_P5G10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ4_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pyrF_#1_P5E1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (pyrF_#1_P5E1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_F7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_C9_id_MSn_positive.mzML at line 21
index 416 is out of bounds for axis 0 with size 416
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/014_CRa_H9M5_M470_Pool_03_low_pos.mzXML at line 689
Premature end of data in tag peaks line 18450, line 18454, column 24055 (014_CRa_H9M5_M470_Pool_03_low_pos.mzXML, line 18454)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/emrE_P4B9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (emrE_P4B9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_06_liver_RESV_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_06_liver_RESV_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dld_P4G10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (dld_P4G10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/351.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/692.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdgK_#1_P4B3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (kdgK_#1_P4B3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P1_id_negative.mzML at line 21
index 236 is out of bounds for axis 0 with size 236
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD2_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112836393-1922182 4_C10_GPR1_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112836393-1922182 4_C10_GPR1_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113316747-1874485 11A09_rep_B_Furazolidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113316747-1874485 11A09_rep_B_Furazolidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpC_#4_P5A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (glpC_#4_P5A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200818570-1881642 16A06_rep_A_Doxapram_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200818570-1881642 16A06_rep_A_Doxapram_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemF_P3H9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (hemF_P3H9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_07_750_prot_16_IMS_20Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153501228-1577418 Batch4_NCIH1048_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201216_LKM_Hydrophobic_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153431811-1577394 Batch5_SW620_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_58.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123333274-1876055 08C02_rep_B_Reboxetine_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123333274-1876055 08C02_rep_B_Reboxetine_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151837870-1576621 Batch7_NCIH2444_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201638072-1878013 09F09_rep_C_Tetrahydrozoline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201638072-1878013 09F09_rep_C_Tetrahydrozoline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150652274-1864913 02D03_rep_C_Metolazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150652274-1864913 02D03_rep_C_Metolazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112437790-1921972 3_H1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112437790-1921972 3_H1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095029/raw/DonahueData/MauiMCapitataBatch1/._91.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_095_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GC4_01_12099.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_B2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2B03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150418090025.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J4_id_MSn_negative.mzML at line 21
index 365 is out of bounds for axis 0 with size 365
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201711229-1878038 09H07_rep_C_Pramoxine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201711229-1878038 09H07_rep_C_Pramoxine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1363.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1363.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122418669-1879919 15D04_rep_C_Mitotaneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122418669-1879919 15D04_rep_C_Mitotaneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153429017-1868604 06F11_rep_B_Dinoprost_trometamola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153429017-1868604 06F11_rep_B_Dinoprost_trometamola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202323284-1878327 10D07_rep_A_Diethylstilbestrolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202323284-1878327 10D07_rep_A_Diethylstilbestrolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_G9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ompA_#2_P3H10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (ompA_#2_P3H10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202000469-1882169 16D05_rep_D_Perospironea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202000469-1882169 16D05_rep_D_Perospironea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GC4_01_16807.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1H001B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125633568-1877099 12B09_rep_D_Dioxybenzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125633568-1877099 12B09_rep_D_Dioxybenzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoG_P3C9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (nuoG_P3C9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C22_id_MSn_negative.mzML at line 21
index 331 is out of bounds for axis 0 with size 331
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_07_dorsal_skin_control_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_07_dorsal_skin_control_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/224.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080616.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_F2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_F2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_70.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_G11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/citX_#1_P5E4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (citX_#1_P5E4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_C11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/108.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fecD_P3H9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (fecD_P3H9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/proX_#1_P4E4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (proX_#1_P4E4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180424_ES_H3K_batch6_repA_47.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_A6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125741633-1877152 13C11_rep_A_Phenylbutazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125741633-1877152 13C11_rep_A_Phenylbutazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150526911-1924455 1_D11_RGT2_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150526911-1924455 1_D11_RGT2_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092334571-1878789 14G06_rep_A_Verteporfinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092334571-1878789 14G06_rep_A_Verteporfinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hD2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hD2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHL10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153520753-1868645 06E10_rep_C_Pilocarpine_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153520753-1868645 06E10_rep_C_Pilocarpine_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lacY_P5D6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (lacY_P5D6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152811276-1577086 Batch3_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152554835-1576972 Batch1_7860_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cusB_#3_P4G2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (cusB_#3_P4G2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_86.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100538157-1869034 06A10_rep_D_Amiodarone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100538157-1869034 06A10_rep_D_Amiodarone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207133010876-1733939 blanka.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113226093-1874444 11C10_rep_B_Dimethadionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113226093-1874444 11C10_rep_B_Dimethadionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_H6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122841060-1880123 15E05_rep_D_Ethinylestradiolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122841060-1880123 15E05_rep_D_Ethinylestradiolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1100.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mdfA_P5D10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (mdfA_P5D10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/blank_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc1_PBST4_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C8_id_MSn_negative.mzML at line 21
index 322 is out of bounds for axis 0 with size 322
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_E1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152800625-1577077 Batch5_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_37_NOR_48.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_37_NOR_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224200140-1870475 01G07_rep_D_Minaprine dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224200140-1870475 01G07_rep_D_Minaprine dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_61_AC+_40.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151711492-1925054 4_C7_SNF3_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151711492-1925054 4_C7_SNF3_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201318436-1881865 16A10_rep_B_Ubenimexa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201318436-1881865 16A10_rep_B_Ubenimexa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_11_male_2022_1017_Michael_neg-0.0031.mzML at line 689
Premature end of data in tag binary line 21479, line 21479, column 817398 (2_11_male_2022_1017_Michael_neg-0.0031.mzML, line 21479)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224317859-1870536 01C03_rep_D_Panthenol (D)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224317859-1870536 01C03_rep_D_Panthenol (D)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201916785-1882135 16E04_rep_D_Clopidogrela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201916785-1882135 16E04_rep_D_Clopidogrela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d1_285_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 39683, column 1 (SysVirol_IFT001_Cal04RG_d1_285_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 39683)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201647278-1882019 16D04_rep_C_Benidipine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201647278-1882019 16D04_rep_C_Benidipine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_04_341_prot_48_IMS_15Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201600133-1877985 09A09_rep_C_Nilvadipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201600133-1877985 09A09_rep_C_Nilvadipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GB4_01_17026.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152405685-1868123 05F08_rep_D_Nafronyl_oxalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152405685-1868123 05F08_rep_D_Nafronyl_oxalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123449350-1876117 08H03_rep_B_Dipivefrin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123449350-1876117 08H03_rep_B_Dipivefrin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_382.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Streptomyces_sp_DSM5940_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD5_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114504518-1875018 12G07_rep_A_Altretaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114504518-1875018 12G07_rep_A_Altretaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_E3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092516117-1878868 14E05_rep_B_Levalbuterol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092516117-1878868 14E05_rep_B_Levalbuterol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152747464-1577066 Batch1_HCC15_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S99.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S99.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145926557-1864089 02A02_rep_A_Metronidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145926557-1864089 02A02_rep_A_Metronidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201008410-1877729 09E09_rep_B_Estropipateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201008410-1877729 09E09_rep_B_Estropipateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIAI08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112247677-1921875 3_E4_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112247677-1921875 3_E4_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_redo_MSMS_2022_neg-0007.mzML at line 689
Premature end of data in tag binary line 4825, line 4825, column 2490405 (pooled_redo_MSMS_2022_neg-0007.mzML, line 4825)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/683.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201313255-1877864 09F07_rep_B_Ethotoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201313255-1877864 09F07_rep_B_Ethotoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121635590-1879567 15F08_rep_A_Vecuronium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121635590-1879567 15F08_rep_A_Vecuronium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122037564-1867230 04C08_rep_C_Clotrimazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122037564-1867230 04C08_rep_C_Clotrimazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132952346-1733925 1pool Skin 1 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30084 - GI-16-035.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150422107-1864797 02A08_rep_C_Diazoxideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150422107-1864797 02A08_rep_C_Diazoxideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3B08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw5_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glcE_#2_P4C4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (glcE_#2_P4C4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124434304-1876586 09C05_rep_A_Loratadinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124434304-1876586 09C05_rep_A_Loratadinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G07Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG017A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123958219-1876363 08B09_rep_D_Ropinirole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123958219-1876363 08B09_rep_D_Ropinirole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OAD2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153405936-1577373 Batch3_KU1919_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091734303-1878506 13E06_rep_D_Apramycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091734303-1878506 13E06_rep_D_Apramycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_136.mzXML at line 689
Premature end of data in tag peaks line 22513, line 22517, column 15941 (20121114_136.mzXML, line 22517)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dapD_P3G8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (dapD_P3G8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121317696-1879418 15B06_rep_A_Amcinonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121317696-1879418 15B06_rep_A_Amcinonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114232182-1874894 11A10_rep_D_Dichlorphenamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114232182-1874894 11A10_rep_D_Dichlorphenamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6H01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200651157-1881578 16A07_rep_A_Amlexanoxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200651157-1881578 16A07_rep_A_Amlexanoxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112109702-1873049 10G04_rep_C_Clofibric_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112109702-1873049 10G04_rep_C_Clofibric_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GB11_01_11918.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD6_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121134984-1879342 14E07_rep_D_D-cycloserinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121134984-1879342 14E07_rep_D_D-cycloserinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/457-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000096497/peak/20200815_ProgressCurveAnalysis_AceA_set3_eff8_t1_rep1.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000096497/peak/20200815_ProgressCurveAnalysis_AceA_set3_eff8_t1_rep1.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150227407-1924305 1_B4_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150227407-1924305 1_B4_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_37_RIN_40.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_37_RIN_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007696_032218-5CRP3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101248271-1869378 07H06_rep_B_Nifuroxazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101248271-1869378 07H06_rep_B_Nifuroxazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085847/raw/andrem1/71_StdMix_8_Neg.mzML at line 689
Unescaped '<' not allowed in attributes values, line 3843, column 13 (71_StdMix_8_Neg.mzML, line 3843)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD2_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113631680-1922553 2_E11_IZH2_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113631680-1922553 2_E11_IZH2_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B8_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123644971-1876209 08E07_rep_C_Rimantadine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123644971-1876209 08E07_rep_C_Rimantadine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/16032021_Batch06_QC_ 2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample141_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_115_1B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_09_dorsal_skin_control_skin_POS.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_09_dorsal_skin_control_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_368.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112410474-1921948 3_H8_GPR1_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112410474-1921948 3_H8_GPR1_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-faux (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115021047-1875266 12D04_rep_B_2-Aminobenzenesulfonamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115021047-1875266 12D04_rep_B_2-Aminobenzenesulfonamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223840092-1870321 01G08_rep_C_Miconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223840092-1870321 01G08_rep_C_Miconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F23_id.mzML at line 21
index 585 is out of bounds for axis 0 with size 585
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165929825-2227592 Healthy6.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_A3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.gha_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/814.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OD3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2D04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113253161-1874466 11D06_rep_B_Zolmitriptana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113253161-1874466 11D06_rep_B_Zolmitriptana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151301810-1576342 Batch6_NCIH2171_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202203525-1882265 16G10_rep_D_Oxymetholonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202203525-1882265 16G10_rep_D_Oxymetholonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152359166-1576878 Batch1_NCIH1993_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L3_id_MSn_positive.mzML at line 21
index 706 is out of bounds for axis 0 with size 706
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoA_P3A2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (nuoA_P3A2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145915750-1864080 02F07_rep_A_Astemizoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145915750-1864080 02F07_rep_A_Astemizoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125239185-1876920 12H02_rep_D_Crotamitonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125239185-1876920 12H02_rep_D_Crotamitonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydcS_P3A4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (ydcS_P3A4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122613640-1867501 05C05_rep_A_Clorgyline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122613640-1867501 05C05_rep_A_Clorgyline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_E2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/eptB_P3H7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (eptB_P3H7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GA12_01_17020.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD141_P2-B-7_03_2718.mzML at line 255
Error -3 while decompressing data: invalid stored block lengths
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114820602-1875168 12F01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114820602-1875168 12F01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG003B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3H03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151201309-1576292 Batch5_NCIH446_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/livF_P5H11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (livF_P5H11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folE_P4F10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (folE_P4F10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112247434-1873607 10G09_rep_D_Hexylcaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112247434-1873607 10G09_rep_D_Hexylcaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnJ_#1_P4B6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (phnJ_#1_P4B6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125606176-1877078 12A03_rep_D_Bemegrideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125606176-1877078 12A03_rep_D_Bemegrideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_C8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_C7_id_MSn_negative_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170207_037EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/db/d1c9a58666124ae41eecc54d76f96f/input_file/MMW4_20170207_037EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152146755-1576773 Batch2_NCIH2170_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/temp/SYL-TSQ-13-06-21_L79cbz.mzXML at line 689
Premature end of data in tag msRun line 5, line 519536, column 1 (SYL-TSQ-13-06-21_L79cbz.mzXML, line 519536)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122425291-1879924 15B11_rep_C_Diclazurila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122425291-1879924 15B11_rep_C_Diclazurila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR33h3a.mzML at line 689
attributes construct error, line 243331, column 62 (pMIBSDR33h3a.mzML, line 243331)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151625287-1576511 Batch7_UACC62_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153632034-1577493 Batch5_A704_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151212281-1576301 Batch5_NCIH1755_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113817643-1874688 11B07_rep_C_Suprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113817643-1874688 11B07_rep_C_Suprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glcA_#3_P5F12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (glcA_#3_P5F12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ompL_P4H3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ompL_P4H3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6E13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170127_039ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c3/711a3715d4fc28b71dd5aa758ef908/input_file/SH10_20170127_039ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122029813-1879745 15H02_rep_B_Imatinibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122029813-1879745 15H02_rep_B_Imatinibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemB_P4C6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (hemB_P4C6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211005_LKM_beads_mb_silica700_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151121111-1924760 3_G8_SNF3_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151121111-1924760 3_G8_SNF3_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152108314-1867987 05G01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152108314-1867987 05G01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151733078-1576568 Batch4_DMS53_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125604610-1863037 03C05_rep_D_Methocarbamolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125604610-1863037 03C05_rep_D_Methocarbamolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201124039-1881779 16H05_rep_B_Ceftibutena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201124039-1881779 16H05_rep_B_Ceftibutena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30090 - GI-16-238.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/CPV_P_rep_4_B-C3_1_5655.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1102.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202249405-1878300 10B07_rep_A_Cefazolin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202249405-1878300 10B07_rep_A_Cefazolin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_G2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2G001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123433484-1876104 08D03_rep_B_Etofenamatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123433484-1876104 08D03_rep_B_Etofenamatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124217440-1876474 08E03_rep_D_Tizanidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124217440-1876474 08E03_rep_D_Tizanidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_A12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MIXEE_20170125_072EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/2b/12f884510dc35329b3e96f944f1a65/input_file/MIXEE_20170125_072EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113210878-1922327 1_D5_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113210878-1922327 1_D5_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/002_Urea_Day4_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Blank_pesticide_170402190345.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152011839-1576698 Batch1_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arnF_P4F11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (arnF_P4F11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR324h2b.mzML at line 689
Unescaped '<' not allowed in attributes values, line 127909, column 1277 (pBpumR324h2b.mzML, line 127909)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/20221212_carryover_test_noISTD_PLASMA_sample04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200632496-1881564 16F08_rep_A_Lofepramineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200632496-1881564 16F08_rep_A_Lofepramineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEP1_40EV_RA4_01_22658.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121722686-1879603 15H09_rep_B_Sildenafilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121722686-1879603 15H09_rep_B_Sildenafilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153458032-1868627 06C11_rep_C_Cisaprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153458032-1868627 06C11_rep_C_Cisaprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GG2_01_11719.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101344528-1869423 07A06_rep_C_Cefaclor_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101344528-1869423 07A06_rep_C_Cefaclor_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metK_P5D10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (metK_P5D10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/betB_P3B8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (betB_P3B8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/XYT-16d.mzXML at line 689
Premature end of data in tag peaks line 2430, line 2434, column 3577 (XYT-16d.mzXML, line 2434)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case70_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case70_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J22_id_MSn_negative.mzML at line 21
index 301 is out of bounds for axis 0 with size 301
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K5_id_negative.mzML at line 21
index 253 is out of bounds for axis 0 with size 253
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151524385-1576460 Batch7_CORL88_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165902842-2227567 Healthy2.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092954804-1879086 14B03_rep_C_Iopanoic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092954804-1879086 14B03_rep_C_Iopanoic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092111251-1878676 14B10_rep_A_Propoxycaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092111251-1878676 14B10_rep_A_Propoxycaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_163.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F18_id.mzML at line 21
index 588 is out of bounds for axis 0 with size 588
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112843940-1874276 11F03_rep_A_Nylidrina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112843940-1874276 11F03_rep_A_Nylidrina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200614928-1881551 16C01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200614928-1881551 16C01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114325616-1922919 4_H1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114325616-1922919 4_H1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153421487-1868598 06G08_rep_B_Rifapentinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153421487-1868598 06G08_rep_B_Rifapentinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/cystathionine.mzXML at line 689
Premature end of data in tag peaks line 5607, line 5611, column 15851 (cystathionine.mzXML, line 5611)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_G11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_A7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_cc1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/440.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ghxP_P4A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ghxP_P4A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122907407-1875843 08F08_rep_A_Quipazine_dimaleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122907407-1875843 08F08_rep_A_Quipazine_dimaleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (8).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007506_031618-0.01Thr1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165822078-2227529 Healthy4.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/887.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/L-lysine.mzXML at line 689
Premature end of data in tag msRun line 5, line 5674, column 1 (L-lysine.mzXML, line 5674)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHD02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_03_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_03_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample136_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/focB_P4H9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (focB_P4H9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tktA_#1_P4E8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (tktA_#1_P4E8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124737881-1862629 03E05_rep_B_Flumequineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124737881-1862629 03E05_rep_B_Flumequineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114946610-1875238 12D08_rep_B_Flurbiprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114946610-1875238 12D08_rep_B_Flurbiprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150339975-1864765 02C09_rep_C_Nomifensine maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150339975-1864765 02C09_rep_C_Nomifensine maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_0126_190128204933.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GD9_01_16826.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130458787-1877487 13D11_rep_B_Lymecyclinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130458787-1877487 13D11_rep_B_Lymecyclinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_132.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_132.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/493-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gatD_#2_P4B9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (gatD_#2_P4B9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_13_male_2022_1017_Michael_neg-0.0033.mzML at line 689
Premature end of data in tag binary line 18325, line 18325, column 415586 (2_13_male_2022_1017_Michael_neg-0.0033.mzML, line 18325)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A20_id_MSn_negative.mzML at line 21
index 250 is out of bounds for axis 0 with size 250
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frdA_P4E5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (frdA_P4E5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample124_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124406980-1862346 03G10_rep_A_Nefopam_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124406980-1862346 03G10_rep_A_Nefopam_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007544_031618-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170125_053EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/41/d87858e77b8b6a998622965b30afe9/input_file/SH7_20170125_053EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124931529-1862720 03H08_rep_B_Ofloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124931529-1862720 03H08_rep_B_Ofloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_RBC_0h_POS.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer4_RBC_0h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_A4_id_positive.mzML at line 21
index 361 is out of bounds for axis 0 with size 361
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-017_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_E4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224338857-1870553 01A05_rep_D_Metformin hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224338857-1870553 01A05_rep_D_Metformin hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153149917-1577263 Batch3_KNS62_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control29_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control29_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8G09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153617180-1868690 06H11_rep_C_Closantela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153617180-1868690 06H11_rep_C_Closantela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_blood_24h_NEG.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer2_blood_24h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150606172-1864878 02C11_rep_C_Oxandrolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150606172-1864878 02C11_rep_C_Oxandrolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B10P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112642684-1922081 4_F10_GPR1_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112642684-1922081 4_F10_GPR1_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S2cells_1_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30168 - GI-18-423.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/217.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnI_P4B1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (phnI_P4B1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/442.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR37_5h1a.mzML at line 88
Invalid base64-encoded string: number of data characters (4141) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112317225-1921901 3_C5_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112317225-1921901 3_C5_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152417042-1576892 Batch2_NCIH520_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152522263-1576945 Batch1_NCIH1838_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GD5_01_16822.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C23_id.mzML at line 21
index 554 is out of bounds for axis 0 with size 554
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_58.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007733_032318-5CRP6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095828/peak/LD2-LC-neg.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145948942-1864107 02E02_rep_B_Bromocryptine mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145948942-1864107 02E02_rep_B_Bromocryptine mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/157-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111929220-1921704 2_E8_GAP1_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111929220-1921704 2_E8_GAP1_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152906476-1577133 Batch3_EPLC272H_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_77.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_77.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroP_P3A8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (aroP_P3A8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/408.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/60-4_idMsMs_25min_40eV_GE5_01_4257.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007486_031618-Unst1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD5_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201006892-1881722 16H11_rep_B_Cefprozilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201006892-1881722 16H11_rep_B_Cefprozilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114112893-1922800 4_F9_STE2_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114112893-1922800 4_F9_STE2_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C5_id_MSn_positive.mzML at line 21
index 393 is out of bounds for axis 0 with size 393
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223300249-1870060 01F07_rep_B_Sulpirideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223300249-1870060 01F07_rep_B_Sulpirideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/009_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Blank_pesticide_170404213407.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_14_CNR_20.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_14_CNR_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152634110-1868237 06D08_rep_A_Digoxinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152634110-1868237 06D08_rep_A_Digoxinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092941223-1879075 14H02_rep_C_Mecamylamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092941223-1879075 14H02_rep_C_Mecamylamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121718363-1879600 15C03_rep_B_Dopamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121718363-1879600 15C03_rep_B_Dopamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltJ_P5H4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (gltJ_P5H4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_67.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBacsR37_5h2a.mzML at line 689
Opening and ending tag mismatch: binary line 150158 and binaryDataArray, line 150161, column 31 (pBacsR37_5h2a.mzML, line 150161)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122038887-1867231 04C08_rep_C_Clotrimazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122038887-1867231 04C08_rep_C_Clotrimazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153731987-1577543 Batch4_DU145_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/475.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_G7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/13.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_56.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123718908-1876236 08C07_rep_C_Alfacalcidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123718908-1876236 08C07_rep_C_Alfacalcidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121341766-1879436 15A09_rep_A_Mepivacaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121341766-1879436 15A09_rep_A_Mepivacaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153302991-1868536 06H05_rep_B_Fentiazaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153302991-1868536 06H05_rep_B_Fentiazaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079772/ccms_peak/Body04_Soil/B09_Soil_2013_016_16_C.mzXML at line 689
Unescaped '<' not allowed in attributes values, line 43328, column 2972 (B09_Soil_2013_016_16_C.mzXML, line 43328)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224230649-1870499 01A02_rep_D_Azaguanine-8a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224230649-1870499 01A02_rep_D_Azaguanine-8a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091833173-1878553 13A07_rep_D_Sotalol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091833173-1878553 13A07_rep_D_Sotalol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130313643-1877405 13H03_rep_B_Articaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130313643-1877405 13H03_rep_B_Articaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N20_id_MSn_negative.mzML at line 21
index 325 is out of bounds for axis 0 with size 325
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2C09Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124752612-1862641 03F03_rep_B_Pyrantel_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124752612-1862641 03F03_rep_B_Pyrantel_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170209_029ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/11/f44931ce5ac2ffffe5b7be3671d8d0/input_file/MMW4_20170209_029ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122203588-1867299 04F09_rep_D_Fipexide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122203588-1867299 04F09_rep_D_Fipexide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172730528-1889937 Nb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151548286-1576480 Batch7_SN12C_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130815965-1877644 13A08_rep_C_Gestrinoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130815965-1877644 13A08_rep_C_Gestrinoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153426520-1868602 06D10_rep_B_Carbimazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153426520-1868602 06D10_rep_B_Carbimazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM5A006.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170127_045ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/17/c311b3497d443c850492e62e8ca98f/input_file/SH8_20170127_045ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I14_id_negative.mzML at line 21
index 237 is out of bounds for axis 0 with size 237
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_143.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_143.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092259/peak/Sample0008.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153849122-1577608 Batch7_EKVX_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130350959-1877434 13B11_rep_B_Piribedil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130350959-1877434 13B11_rep_B_Piribedil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudL_#2_P4B1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (nudL_#2_P4B1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000088261/raw/210916_tanaka06.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_106.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_106.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096497/peak/20200828_ProgressCurveAnalysis_Pta_set7_eff1_t3_rep1.mzML at line 689
Premature end of data in tag binary line 1897, line 1897, column 58631 (20200828_ProgressCurveAnalysis_Pta_set7_eff1_t3_rep1.mzML, line 1897)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/005_Urea_Day11_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_E3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_036ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/de/b90a1fb9b972d0aec03e0381f101de/input_file/QC_20170209_036ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153238621-1577302 Batch4_DMS114_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150345179-1924369 1_D5_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150345179-1924369 1_D5_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GA2_01_17135.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123446937-1876115 08C01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123446937-1876115 08C01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113654045-1922572 2_G3_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113654045-1922572 2_G3_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121401569-1879451 15A04_rep_A_Doxycycline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121401569-1879451 15A04_rep_A_Doxycycline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092259/peak/Sample0004.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122929178-1880161 15D02_rep_D_5-fluorouracilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122929178-1880161 15D02_rep_D_5-fluorouracilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121737221-1879614 15C10_rep_B_Vardenafila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121737221-1879614 15C10_rep_B_Vardenafila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130247514-1877385 13B04_rep_B_Pirlindole_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130247514-1877385 13B04_rep_B_Pirlindole_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100634563-1869079 07A09_rep_A_Dosulepin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100634563-1869079 07A09_rep_A_Dosulepin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102028549-1869748 07E06_rep_D_Rifampicinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102028549-1869748 07E06_rep_D_Rifampicinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yhjH_#5_P3C1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (yhjH_#5_P3C1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C17_id_negative.mzML at line 21
index 267 is out of bounds for axis 0 with size 267
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112558888-1874145 11F11_rep_A_Methylhydantoin-5-(L)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112558888-1874145 11F11_rep_A_Methylhydantoin-5-(L)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D12_id_MSn_positive.mzML at line 21
index 399 is out of bounds for axis 0 with size 399
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiM_P4A5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (thiM_P4A5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/392.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_03_213_prot_10_IMS_8Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114912300-1875210 12G05_rep_B_Phenoxybenzamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114912300-1875210 12G05_rep_B_Phenoxybenzamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007503_031618-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152640465-1868242 06C08_rep_A_Dibenzepine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152640465-1868242 06C08_rep_A_Dibenzepine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28022021_Batch02_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_131_1A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091831861-1878552 13A07_rep_D_Sotalol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091831861-1878552 13A07_rep_D_Sotalol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_C10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-041_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151846161-1576628 Batch7_NCIH1993_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_E3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113223514-1922338 1_F7_IZH2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113223514-1922338 1_F7_IZH2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ2_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152617795-1576991 Batch1_HCC1143_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092259/ccms_peak/Sample0007.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121357417-1866917 04E01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121357417-1866917 04E01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202526455-1878424 10A11_rep_A_Balsalazide_Sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202526455-1878424 10A11_rep_A_Balsalazide_Sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/608.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113723684-1874645 11C01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113723684-1874645 11C01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_P18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130747903-1877621 13C06_rep_C_Guaiacola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130747903-1877621 13C06_rep_C_Guaiacola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152842396-1868336 06E08_rep_A_Hydrocortisone_basea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152842396-1868336 06E08_rep_A_Hydrocortisone_basea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121855417-1867149 04C04_rep_C_Doxepin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121855417-1867149 04C04_rep_C_Doxepin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/526-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224304087-1870525 01F07_rep_D_Sulpiridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224304087-1870525 01F07_rep_D_Sulpiridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101924928-1869696 07B01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101924928-1869696 07B01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_15_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GA7_01_16908.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153244796-1577307 Batch4_SW780_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/guaD_P4G6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (guaD_P4G6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7C04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-044_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153941276-1577652 Batch7_NCIH441_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/832.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_MICU_181_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample157_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150838393-1924620 2_D2_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150838393-1924620 2_D2_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR23h1a.mzML at line 689
Opening and ending tag mismatch: binary line 127112 and scanList, line 127123, column 22 (pBlateR23h1a.mzML, line 127123)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153220132-1577287 Batch4_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybjI_#3_P4B3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ybjI_#3_P4B3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201920521-1882138 16D01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201920521-1882138 16D01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202447139-1878393 10C11_rep_A_Mevalonic-D,_L_acid_lactoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202447139-1878393 10C11_rep_A_Mevalonic-D,_L_acid_lactoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GF12_01_16857.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/-ve_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD6_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122708140-1880050 15B06_rep_D_Amcinonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122708140-1880050 15B06_rep_D_Amcinonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/sl26da_dapE_P5B12_pHILIC_pos.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_E11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_plasma_0h_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer1_plasma_0h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/367.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/949.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100938454-1869226 07C02_rep_A_Vigabatrin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100938454-1869226 07C02_rep_A_Vigabatrin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_sample08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090566/raw/SolventControl_37_2_5.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_04_250_prot_06_IMS_9Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C23_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/290.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_5_B_rep_3_B-F1_1_5682.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_115_3B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET61.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET61.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201609838-1877992 09C06_rep_C_Tetraethylenepentamine_pentahydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201609838-1877992 09C06_rep_C_Tetraethylenepentamine_pentahydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145831922-1864045 02B10_rep_A_Mianserine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145831922-1864045 02B10_rep_A_Mianserine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_02_blood_control_oral_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_02_blood_control_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/caiD_#5_P5H12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (caiD_#5_P5H12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R37_5h1a.mzML at line 689
Specification mandates value for attribute accJ6BP8iegT, line 267818, column 47 (pBlichMO17R37_5h1a.mzML, line 267818)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/ps181_psd_P4G4_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024913 (ps181_psd_P4G4_Aquity_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E4_id.mzML at line 21
index 522 is out of bounds for axis 0 with size 522
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N8_id_MSn_negative.mzML at line 21
index 325 is out of bounds for axis 0 with size 325
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B5_id.mzML at line 21
index 608 is out of bounds for axis 0 with size 608
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/convert mzML/210916_tanaka13.mzML at line 689
error parsing attribute name, line 751247, column 1270 (210916_tanaka13.mzML, line 751247)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/160-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroL_P3H10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (aroL_P3H10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007671_032118-1CRP1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A21_id_MSn_positive.mzML at line 21
index 473 is out of bounds for axis 0 with size 473
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152806570-1577082 Batch3_SKLU1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_E6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_H4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample213_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100423003-1868974 06F01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100423003-1868974 06F01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123046811-1875921 08H01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123046811-1875921 08H01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152341797-1868105 05A04_rep_D_Chlorpropamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152341797-1868105 05A04_rep_D_Chlorpropamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124943625-1876789 12F02_rep_C_Propofolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124943625-1876789 12F02_rep_C_Propofolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113003229-1874337 11H04_rep_B_Theophylline_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113003229-1874337 11H04_rep_B_Theophylline_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5F03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223725476-1870263 01C07_rep_C_Cimetidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223725476-1870263 01C07_rep_C_Cimetidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yfdR_#3_P4E1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (yfdR_#3_P4E1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S51.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S51.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223232153-1870039 01A09_rep_B_Amprolium hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223232153-1870039 01A09_rep_B_Amprolium hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_01_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_01_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lamB_P5G8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (lamB_P5G8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysE_P3B8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (cysE_P3B8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E21_id_MSn_positive.mzML at line 21
index 708 is out of bounds for axis 0 with size 708
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113906784-1874728 11A11_rep_D_Sulconazole_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113906784-1874728 11A11_rep_D_Sulconazole_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202439530-1878387 10A04_rep_A_Phenethicillin_potassium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202439530-1878387 10A04_rep_A_Phenethicillin_potassium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088138/raw/210916_tanaka05.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_A7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ygaP_#1_P5C1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (ygaP_#1_P5C1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170209_031ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/37/8812a2f5927677993303252ddf2204/input_file/MMW6_20170209_031ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD3_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30070 - GI-14-466.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150436867-1924413 1_G2_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150436867-1924413 1_G2_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152405598-1576883 Batch2_NCIH596_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_C8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Blank_4_B-A1_1_5559.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case43_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case43_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD4_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101908694-1869683 07F01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101908694-1869683 07F01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153542898-1577452 Batch4_NCIH1563_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2F10P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091639651-1878463 13F02_rep_D_Flucloxacillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091639651-1878463 13F02_rep_D_Flucloxacillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151641749-1576525 Batch7_7860_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/CORN_AD5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample117_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0014_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_01_dorsal_skin_control_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_01_dorsal_skin_control_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_140.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112659408-1874193 11G05_rep_A_Methylhydantoin-5-(D)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112659408-1874193 11G05_rep_A_Methylhydantoin-5-(D)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/418.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1143.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201126722-1881781 16A09_rep_B_Enrofloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201126722-1881781 16A09_rep_B_Enrofloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123221979-1875998 08A09_rep_B_Acarbosea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123221979-1875998 08A09_rep_B_Acarbosea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/102-4_MsMs_25min_20eV_GE3_01_4124.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_YP_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111716062-1921590 1_B11_GAP1_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111716062-1921590 1_B11_GAP1_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111712743-1921587 1_A1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111712743-1921587 1_A1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIAJ13.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_dilute_190201025439.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_LS29.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/820.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153132428-1577249 Batch5_NCIH727_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person18_plasma_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person18_plasma_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N7_id_MSn_positive.mzML at line 21
index 701 is out of bounds for axis 0 with size 701
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180915_ES_H3K_batch2_repA_30.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122705896-1867543 05D01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122705896-1867543 05D01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_127.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083774/ccms_peak/Metabolomics/Pos_86.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223849942-2227679 PAT38.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I10_id_MSn_positive.mzML at line 21
index 698 is out of bounds for axis 0 with size 698
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P11_id_MSn_negative.mzML at line 21
index 307 is out of bounds for axis 0 with size 307
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d8_286_lipid__Neg_17Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 33765, column 1 (SysVirol_IFL001_Cal04RG_d8_286_lipid__Neg_17Sep13_13-07-01.mzXML, line 33765)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153324370-1868553 06F08_rep_B_Meclozine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153324370-1868553 06F08_rep_B_Meclozine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G5_id_MSn_negative.mzML at line 21
index 317 is out of bounds for axis 0 with size 317
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152331694-1576856 Batch2_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L4cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L4cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_19040322_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101623447-1869548 07D06_rep_C_Trimethadioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101623447-1869548 07D06_rep_C_Trimethadioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122040186-1867232 04C06_rep_C_Dimenhydrinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122040186-1867232 04C06_rep_C_Dimenhydrinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125032941-1876826 12F10_rep_C_Iodipamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125032941-1876826 12F10_rep_C_Iodipamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153607223-1868682 06B05_rep_C_Amlodipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153607223-1868682 06B05_rep_C_Amlodipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hB3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hB3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L71.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L71.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130140654-1877333 13F11_rep_B_Rimexolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130140654-1877333 13F11_rep_B_Rimexolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpTen2_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_122a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152948911-1577169 Batch5_NCIH3255_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114203930-1874871 11G02_rep_D_Gabapentinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114203930-1874871 11G02_rep_D_Gabapentinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P14_id.mzML at line 21
index 560 is out of bounds for axis 0 with size 560
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aceF_P4C4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (aceF_P4C4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw5_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113531984-1922502 2_G8_IZH2_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113531984-1922502 2_G8_IZH2_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_101.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sdhC_P3G1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (sdhC_P3G1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case61_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case61_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190123_ES_H3K_batch15_repB_126.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5A001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hB1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hB1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152334195-1576858 Batch2_NCIH2122_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ5_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122633499-1867517 05A01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122633499-1867517 05A01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/citD_P3H5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (citD_P3H5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_342.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GB6_01_17028.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_G4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153734305-1577545 Batch6_NCIH526_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172710852-1889923 NNb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080071/ccms_peak/Dataset 1/Positive1/._Blank_P_2_lichen_03_RA5_01_25195.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/25_D24062013T2335_1399CBU_0002_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123234874-1867802 05G05_rep_B_Probucola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123234874-1867802 05G05_rep_B_Probucola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1026.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152317962-1576845 Batch1_NCIH1703_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/433.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_A2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fumB_P3F11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (fumB_P3F11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2J001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153034574-1577204 Batch3_NCIH460DNP53_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121130992-1879339 14F08_rep_D_(-)-Isoproterenol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121130992-1879339 14F08_rep_D_(-)-Isoproterenol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpTen3_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_F6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_22_male_2022_1017_Michael_neg-0.0046.mzML at line 689
Premature end of data in tag binary line 20301, line 20301, column 319568 (4_22_male_2022_1017_Michael_neg-0.0046.mzML, line 20301)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR324h3a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_67.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xapA_P4C12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (xapA_P4C12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/229.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control57_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control57_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151710346-1925053 4_C7_SNF3_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151710346-1925053 4_C7_SNF3_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122612789-1880007 15A10_rep_D_Rifaximinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122612789-1880007 15A10_rep_D_Rifaximinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C6_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Pool_6_B-A2_1_5634.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092732950-1878974 14D06_rep_B_(R)-Propranolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092732950-1878974 14D06_rep_B_(R)-Propranolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151816556-1867849 05H07_rep_C_Etoposideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151816556-1867849 05H07_rep_C_Etoposideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ5_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_82.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHL04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N6.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112834985-1874269 11D08_rep_A_Carbenoxolone_disodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112834985-1874269 11D08_rep_A_Carbenoxolone_disodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/430.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_17111316_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case95_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case95_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_B1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD2_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_97.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_97.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD4_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122641938-1867524 05C03_rep_A_Methapyrilene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122641938-1867524 05C03_rep_A_Methapyrilene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121851766-1867146 04A08_rep_C_Albendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121851766-1867146 04A08_rep_C_Albendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNS335_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A11_id.mzML at line 21
index 579 is out of bounds for axis 0 with size 579
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/001_Soil_WaterExtra_1_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K11_id_MSn_negative.mzML at line 21
index 349 is out of bounds for axis 0 with size 349
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_C6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/XYT-36d.mzXML at line 689
Premature end of data in tag peaks line 4121, line 4125, column 7673 (XYT-36d.mzXML, line 4125)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_C3_id_negative.mzML at line 21
index 254 is out of bounds for axis 0 with size 254
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_A3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/016_1000uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151501516-1576442 Batch7_NCIH1734_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113252722-1922363 1_H9_IZH2_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113252722-1922363 1_H9_IZH2_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151318473-1576356 Batch7_HOP62_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_P5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111937173-1872591 10D07_rep_C_Diethylstilbestrola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111937173-1872591 10D07_rep_C_Diethylstilbestrola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_32_NOR_15.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_32_NOR_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_B7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/292.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_F4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_010EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/d0/06fca8765a20bb9ea911de95e1b195/input_file/QC_20170209_010EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152941968-1868383 06A07_rep_A_Delavirdineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152941968-1868383 06A07_rep_A_Delavirdineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153635134-1868705 06G07_rep_C_Efavirenzb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153635134-1868705 06G07_rep_C_Efavirenzb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202033814-1882195 16B03_rep_D_Ezetimibea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202033814-1882195 16B03_rep_D_Ezetimibea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ynaI_P5G4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ynaI_P5G4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125822350-1877183 13G10_rep_A_Risperidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125822350-1877183 13G10_rep_A_Risperidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/007_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153136117-1577252 Batch4_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113855082-1922678 3_G2_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113855082-1922678 3_G2_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_380.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/661.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125932786-1863210 04F09_rep_A_Fipexide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125932786-1863210 04F09_rep_A_Fipexide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-blank (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151805496-1576594 Batch3_PANC1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202123076-1882233 16C02_rep_D_(R)-Duloxetine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202123076-1882233 16C02_rep_D_(R)-Duloxetine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_V11_036_prot_19_IMS_20Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122846470-1867624 05H10_rep_A_Prochlorperazine_dimaleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122846470-1867624 05H10_rep_A_Prochlorperazine_dimaleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113744845-1874662 11A09_rep_C_Furazolidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113744845-1874662 11A09_rep_C_Furazolidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_QC_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_QC_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cobS_P3G12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (cobS_P3G12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B22_id.mzML at line 21
index 512 is out of bounds for axis 0 with size 512
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151403326-1924900 4_G8_SNF3_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151403326-1924900 4_G8_SNF3_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111413953-1871474 10B10_rep_B_Levonordefrinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111413953-1871474 10B10_rep_B_Levonordefrinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223239965-1870045 01H06_rep_B_Adiphenine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223239965-1870045 01H06_rep_B_Adiphenine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153422696-1868599 06G08_rep_B_Rifapentineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153422696-1868599 06G08_rep_B_Rifapentineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/011_20uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180428_ES_H3K_batch3_repC_35.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/histd_hisD_P4E3_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 552, column 10029834 (histd_hisD_P4E3_Aquity_pos.mzXML, line 552)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153813743-1577578 Batch6_MDAMB435S_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dmsC_P4F3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (dmsC_P4F3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151242441-1576326 Batch5_NCIH446_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/123-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/216-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/blank_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_0123.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201324889-1881870 16B06_rep_B_Pantoprazole_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201324889-1881870 16B06_rep_B_Pantoprazole_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145930300-1864092 02G04_rep_B_Chlorhexidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145930300-1864092 02G04_rep_B_Chlorhexidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GG8_01_16868.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202128132-1882237 16G03_rep_D_Loteprednol_etabonatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202128132-1882237 16G03_rep_D_Loteprednol_etabonatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122337759-1879888 15H07_rep_C_Rosiglitazone_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122337759-1879888 15H07_rep_C_Rosiglitazone_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124628732-1862574 03G07_rep_B_Griseofulvina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124628732-1862574 03G07_rep_B_Griseofulvina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/016_1000uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150418094707.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153432971-1868607 06F08_rep_C_Meclozine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153432971-1868607 06F08_rep_C_Meclozine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-072.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-072.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person15_plasma_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person15_plasma_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GD8_01_11675.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_E4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pheA_#2_P5E5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (pheA_#2_P5E5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD4_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165829610-2227536 PAT41.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121723333-1867077 04E01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121723333-1867077 04E01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8H06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150222629-1864706 02G01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150222629-1864706 02G01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_96.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_96.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151020421-1865075 02C05_rep_D_Famotidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151020421-1865075 02C05_rep_D_Famotidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113132968-1922294 1_G9_IZH2_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113132968-1922294 1_G9_IZH2_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1362.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1362.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112505711-1921996 3_A5_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112505711-1921996 3_A5_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/045_49.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pyrC_P4F9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (pyrC_P4F9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152731887-1577053 Batch3_MDAMB157_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122405191-1867397 04C09_rep_D_Vinpocetineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122405191-1867397 04C09_rep_D_Vinpocetineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F1_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223831671-2227663 PAT33.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_13_Dorsal_skin_CMC_control_NEG.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_13_Dorsal_skin_CMC_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_E7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_A10_id_positive.mzML at line 21
index 389 is out of bounds for axis 0 with size 389
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114018055-1922752 3_E8_STE2_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114018055-1922752 3_E8_STE2_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C12_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091635773-1878460 13A01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091635773-1878460 13A01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153647618-1577506 Batch4_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_C7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wecA_P3C11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (wecA_P3C11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114741737-1875137 12F07_rep_B_Bephenium_hydroxynaphthoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114741737-1875137 12F07_rep_B_Bephenium_hydroxynaphthoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_69.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125550929-1877066 12C04_rep_D_Diloxanide_furoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125550929-1877066 12C04_rep_D_Diloxanide_furoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_sample05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102016246-1869738 07E01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102016246-1869738 07E01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_E7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/366.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/103.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122716984-1867552 05B01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122716984-1867552 05B01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.gha_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201311825-1877863 09A07_rep_B_Oxiconazole_Nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201311825-1877863 09A07_rep_B_Oxiconazole_Nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101124859-1869311 07A03_rep_B_Cefotiam_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101124859-1869311 07A03_rep_B_Cefotiam_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoM_#5_P4H5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (nuoM_#5_P4H5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122921615-1880155 15F01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122921615-1880155 15F01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121108845-1879322 14C09_rep_D_Thiethylperazine_dimalate_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121108845-1879322 14C09_rep_D_Thiethylperazine_dimalate_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_62.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_62.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200915480-1881684 16G08_rep_A_Risedronic_acid_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200915480-1881684 16G08_rep_A_Risedronic_acid_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pyrE_P6G4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (pyrE_P6G4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_237.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112438170-1874081 10B09_rep_D_Folinic_acid_calcium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112438170-1874081 10B09_rep_D_Folinic_acid_calcium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1457.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1457.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075703.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ5_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/srlQ_P5E6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (srlQ_P5E6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GA11_01_11832.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_11P_A8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153019418-1577193 Batch3_647V_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130314892-1877406 13H03_rep_B_Articaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130314892-1877406 13H03_rep_B_Articaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122829732-1867611 05F03_rep_A_Debrisoquin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122829732-1867611 05F03_rep_A_Debrisoquin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/393.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/leuD_#2_P4F2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (leuD_#2_P4F2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101253491-1869382 07A08_rep_B_Daunorubicin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101253491-1869382 07A08_rep_B_Daunorubicin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hA3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hA3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_C9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBsubR23h3a.mzML at line 617
'intensity array'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1212.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1212.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114230942-1922870 4_B7_STE2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114230942-1922870 4_B7_STE2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H3_id.mzML at line 21
index 591 is out of bounds for axis 0 with size 591
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125822602-1863151 04H01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125822602-1863151 04H01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153608060-1577473 Batch4_NCIH2342_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R27_5h1a.mzML at line 689
error parsing attribute name, line 212847, column 52 (pBlichMO17R27_5h1a.mzML, line 212847)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153759640-1577566 Batch6_NCIH82_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7G05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_113.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_153.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150217451-1864702 02E10_rep_B_Pirenzepine dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150217451-1864702 02E10_rep_B_Pirenzepine dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113450344-1874523 11D10_rep_C_Ganciclovirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113450344-1874523 11D10_rep_C_Ganciclovirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET98.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET98.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153043160-1577210 Batch3_SKMEL5_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nagA_P3A3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (nagA_P3A3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_36_40x_2022_1006_Michael_pos-0.0062.mzML at line 689
Premature end of data in tag binary line 957, line 957, column 168913 (3_36_40x_2022_1006_Michael_pos-0.0062.mzML, line 957)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122519172-1867457 05C02_rep_A_Furosemideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122519172-1867457 05C02_rep_A_Furosemideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_73.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OD3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C5_id_MSn_negative.mzML at line 21
index 300 is out of bounds for axis 0 with size 300
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD3_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_112.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_112.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112905446-1874293 11D02_rep_A_Butacaineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112905446-1874293 11D02_rep_A_Butacaineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E11_id_MSn_negative.mzML at line 21
index 283 is out of bounds for axis 0 with size 283
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152221692-1868044 05B11_rep_D_Domperidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152221692-1868044 05B11_rep_D_Domperidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123000597-1875885 08C08_rep_A_Cilostazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123000597-1875885 08C08_rep_A_Cilostazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_G2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N3_id_MSn_negative.mzML at line 21
index 340 is out of bounds for axis 0 with size 340
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153106345-1577228 Batch3_NCIH661_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_phospho_LFD5_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_D7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/36.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153959173-1577667 Batch6_DU4475_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_blood_4h_NEG.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer2_blood_4h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_A12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123123827-1875951 08H08_rep_A_Levetiracetamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123123827-1875951 08H08_rep_A_Levetiracetamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152717256-1868270 06D09_rep_A_Doxorubicin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152717256-1868270 06D09_rep_A_Doxorubicin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/229.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Blank_pesticide_170404201014.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111719530-1921593 1_G9_GAP1_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111719530-1921593 1_G9_GAP1_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/617.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114325065-1874937 12C08_rep_A_S-(+)-ibuprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114325065-1874937 12C08_rep_A_S-(+)-ibuprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150648730-1924525 2_D4_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150648730-1924525 2_D4_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114258111-1874915 12F01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114258111-1874915 12F01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ppsA_P5F10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (ppsA_P5F10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/25_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA21.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152238647-1576814 Batch2_NCIH522_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_xx3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ROO1_MS_RA1_01_22699.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std c 001a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nadE_P4B9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (nadE_P4B9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD5_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD5_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114150550-1874860 11C05_rep_D_Benzthiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114150550-1874860 11C05_rep_D_Benzthiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aspC_#3_P5E7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (aspC_#3_P5E7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113025166-1874352 11D09_rep_B_Iocetamic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113025166-1874352 11D09_rep_B_Iocetamic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B08Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNS335_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/002_Urea_Day9_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L18_id_MSn_negative.mzML at line 21
index 302 is out of bounds for axis 0 with size 302
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L16_id_MSn_positive.mzML at line 21
index 648 is out of bounds for axis 0 with size 648
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111418141-1871477 10F04_rep_B_Norgestrel-(-)-Da.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111418141-1871477 10F04_rep_B_Norgestrel-(-)-Da.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092611753-1878911 14C10_rep_B_Mesalamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092611753-1878911 14C10_rep_B_Mesalamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_02062001_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/281.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ1_8 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125434671-1862964 03A03_rep_D_Pentylenetetrazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125434671-1862964 03A03_rep_D_Pentylenetetrazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_C12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152647595-1577016 Batch3_MDAMB157_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_med (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/909.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153705468-1577521 Batch4_977_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2A01Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122110476-1879776 15D08_rep_B_Olopatadine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122110476-1879776 15D08_rep_B_Olopatadine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2F05P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_115_1B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B9_id_MSn_negative.mzML at line 21
index 296 is out of bounds for axis 0 with size 296
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112849759-1922194 4_A2_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112849759-1922194 4_A2_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_0126_190128144420.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095328/peak/MS_RAW_data/230811_BBT301_control_TPP_HighPH_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152454545-1576922 Batch1_CALU3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_90.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_90.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gpp_P3C10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (gpp_P3C10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113852943-1922676 3_E5_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113852943-1922676 3_E5_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152028454-1576711 Batch1_UMUC3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165753455-2227503 PAT40.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150519682-1864842 02B10_rep_C_Mianserine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150519682-1864842 02B10_rep_C_Mianserine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acpS_#2_P3E8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (acpS_#2_P3E8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125926800-1877233 13B04_rep_A_Pirlindole_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125926800-1877233 13B04_rep_A_Pirlindole_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_19073146_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sufC_#1_P3E3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (sufC_#1_P3E3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201924259-1882141 16H07_rep_D_Milnacipran_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201924259-1882141 16H07_rep_D_Milnacipran_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_plasma_4h_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer1_plasma_4h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person05_plasma_elder_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person05_plasma_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_5_P_rep_1_B-E6_1_5549.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114307974-1874923 12A10_rep_A_Diacereinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114307974-1874923 12A10_rep_A_Diacereinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151736702-1576571 Batch4_DU145_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151959488-1867931 05F07_rep_C_Clofazimineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151959488-1867931 05F07_rep_C_Clofazimineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E12_id_MSn_negative.mzML at line 21
index 312 is out of bounds for axis 0 with size 312
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GC8_01_16936.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170207_035EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ac/2cc21e5e337a73e6e6cdac85a80d09/input_file/MMW3_20170207_035EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S56.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S56.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate21/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223740680-1870275 01B09_rep_C_Idoxuridinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223740680-1870275 01B09_rep_C_Idoxuridinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094792/raw/raw_files/Briareum.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_04_AC+_53.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_G12_id_negative.mzML at line 21
index 187 is out of bounds for axis 0 with size 187
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130050140-1877294 13A06_rep_A_Floxuridineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130050140-1877294 13A06_rep_A_Floxuridineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151926915-1867905 05H05_rep_C_Kanamycin_A_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151926915-1867905 05H05_rep_C_Kanamycin_A_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122844339-1875825 08E09_rep_A_Oxibendazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122844339-1875825 08E09_rep_A_Oxibendazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.cat_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S05_dilute.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114339734-1874949 12C02_rep_A_Hymecromoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114339734-1874949 12C02_rep_A_Hymecromoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130015461-1863245 04E03_rep_A_Fenoterol_hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130015461-1863245 04E03_rep_A_Fenoterol_hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET26.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET26.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/302.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153046052-1577212 Batch3_647V_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_83.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100941079-1869228 07B10_rep_A_Propafenone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100941079-1869228 07B10_rep_A_Propafenone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemA_#4_P5H8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (hemA_#4_P5H8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170125_021EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/d9/97abff7b84052e4c535a2edeacf6db/input_file/SH9_20170125_021EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P5_id_MSn_positive.mzML at line 21
index 663 is out of bounds for axis 0 with size 663
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pdxY_P5A12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (pdxY_P5A12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114015828-1922750 3_C1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114015828-1922750 3_C1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD6_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130323590-1877413 13G07_rep_B_Arbutina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130323590-1877413 13G07_rep_B_Arbutina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121959851-1879722 15G01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121959851-1879722 15G01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5D08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_87.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/192-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/queC_P3B7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (queC_P3B7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GA7_01_11454.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7E12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121322405-1866891 04A07_rep_B_Pinacidilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121322405-1866891 04A07_rep_B_Pinacidilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/Bs_black_P1-A-1_01_23051.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-blank (5).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_E7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152538617-1868194 05B08_rep_D_Procainamide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152538617-1868194 05B08_rep_D_Procainamide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1143.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101138728-1869322 07E07_rep_B_Ethionamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101138728-1869322 07E07_rep_B_Ethionamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fdoH_P5E4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (fdoH_P5E4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200722067-1881601 16H10_rep_A_Desonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200722067-1881601 16H10_rep_A_Desonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112133050-1873548 10H09_rep_C_Dienestrolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112133050-1873548 10H09_rep_C_Dienestrolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_3151_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_D9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_D9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151253106-1576335 Batch5_MALME3M_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094943/raw/MS2/Blank_MeOH_1-r002.mzML at line 689
Premature end of data in tag indexedmzML line 2, line 48152, column 1 (Blank_MeOH_1-r002.mzML, line 48152)
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD132_P2-A-7_03_2673.mzML at line 255
Error -3 while decompressing data: invalid stored block lengths
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101153909-1869334 07A06_rep_B_Cefaclor_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101153909-1869334 07A06_rep_B_Cefaclor_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hB1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hB1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153446686-1868618 06C01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153446686-1868618 06C01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130430299-1877465 13D06_rep_B_Fluvoxamine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130430299-1877465 13D06_rep_B_Fluvoxamine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_AM_6.mzXML at line 689
Premature end of data in tag peaks line 2096, line 2100, column 15848 (L_AM_6.mzXML, line 2100)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125457035-1877025 12G02_rep_D_Pentetic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125457035-1877025 12G02_rep_D_Pentetic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122901125-1880139 15B01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122901125-1880139 15B01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3H09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150900593-1865013 02F04_rep_D_Hydroxyzine dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150900593-1865013 02F04_rep_D_Hydroxyzine dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113033202-1874357 11E09_rep_B_Iodixanolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113033202-1874357 11E09_rep_B_Iodixanolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K11_id_MSn_negative.mzML at line 21
index 370 is out of bounds for axis 0 with size 370
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/943.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112132747-1921810 2_G9_GAP1_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112132747-1921810 2_G9_GAP1_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113716636-1922592 3_C9_STE2_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113716636-1922592 3_C9_STE2_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person13_RBC_youth_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Person13_RBC_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Negative_Veh_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152117843-1576750 Batch1_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123606954-1876179 08G08_rep_C_Folic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123606954-1876179 08G08_rep_C_Folic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210119_LKM_yeast_nBut_50to1_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_19071524_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/020_CRa_H9M5_M470_C14_K3_low_pos.mzXML at line 689
Premature end of data in tag peaks line 15467, line 15471, column 11767 (020_CRa_H9M5_M470_C14_K3_low_pos.mzXML, line 15471)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081767.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150346270-1924370 1_D5_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150346270-1924370 1_D5_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bfr_#2_P4A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (bfr_#2_P4A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GC1_01_16929.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S50.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S50.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201837331-1882104 16B06_rep_D_Pantoprazole_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201837331-1882104 16B06_rep_D_Pantoprazole_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114404142-1874969 12E07_rep_A_Idazoxan_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114404142-1874969 12E07_rep_A_Idazoxan_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_blood_24h_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Volunteer4_blood_24h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ2_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lldP_P5B12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (lldP_P5B12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100309565-1868916 06C04_rep_D_Carisoprodolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100309565-1868916 06C04_rep_D_Carisoprodolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153246021-1577308 Batch5_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5H05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F3_id_MSn_positive.mzML at line 21
index 571 is out of bounds for axis 0 with size 571
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086335/raw/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/BD - MSConvert/18BDpos.mzML at line 689
Extra content at the end of the document, line 50859, column 1 (18BDpos.mzML, line 50859)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153514712-1577429 Batch4_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111921794-1872579 10E10_rep_C_Sulfametera.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111921794-1872579 10E10_rep_C_Sulfametera.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_C6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_D4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0011_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0011_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample098.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/959.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152221178-1576800 Batch2_NCIH441_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O5_id_MSn_positive.mzML at line 21
index 575 is out of bounds for axis 0 with size 575
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151219000-1924810 3_A7_SNF3_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151219000-1924810 3_A7_SNF3_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET82.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET82.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc1 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N13_id_MSn_negative.mzML at line 21
index 349 is out of bounds for axis 0 with size 349
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152107901-1576742 Batch1_NCIH2030_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224201446-1870476 01G07_rep_D_Minaprine dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224201446-1870476 01G07_rep_D_Minaprine dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130636382-1877564 13C08_rep_C_Pramipexole_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130636382-1877564 13C08_rep_C_Pramipexole_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190118_ES_H3K_batch14_repB_203.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152853989-1868345 06H10_rep_A_Racloprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152853989-1868345 06H10_rep_A_Racloprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123123749-1867745 05D03_rep_B_Dobutamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123123749-1867745 05D03_rep_B_Dobutamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007484_031618-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J12_id.mzML at line 21
index 522 is out of bounds for axis 0 with size 522
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_58.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151603799-1924997 4_D5_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151603799-1924997 4_D5_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD2_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EBM013.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_ehigh (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD5_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_E12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I22_id_MSn_negative.mzML at line 21
index 352 is out of bounds for axis 0 with size 352
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114848541-1875191 12A08_rep_B_Oxybenzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114848541-1875191 12A08_rep_B_Oxybenzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1A02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/focB_P4H9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (focB_P4H9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_4_B_rep_1_B-D4_1_5666.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uxuA_P5E4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (uxuA_P5E4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F18_id_MSn_positive.mzML at line 21
index 469 is out of bounds for axis 0 with size 469
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafTreatedA2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafTreatedA2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ilvB_P4A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ilvB_P4A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mgsA_P3D8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (mgsA_P3D8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151105072-1865110 02D11_rep_D_Triamcinolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151105072-1865110 02D11_rep_D_Triamcinolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_sp_EB1D001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112827849-1922174 4_C3_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112827849-1922174 4_C3_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125438411-1862967 03E06_rep_D_Tolfenamic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125438411-1862967 03E06_rep_D_Tolfenamic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H9_id.mzML at line 21
index 562 is out of bounds for axis 0 with size 562
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_05_RIN_53.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_05_RIN_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GC9_01_17046.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIAB04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152613059-1576987 Batch2_OVCAR3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190127153517.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200701834-1881586 16E11_rep_A_Cefpodoxime_proxetilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200701834-1881586 16E11_rep_A_Cefpodoxime_proxetilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S54.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S54.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G10_id_MSn_negative.mzML at line 21
index 313 is out of bounds for axis 0 with size 313
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125659552-1877119 13G09_rep_A_Benzathine_benzylpenicillina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125659552-1877119 13G09_rep_A_Benzathine_benzylpenicillina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hybB_P3B10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (hybB_P3B10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122836171-1867616 05D08_rep_A_Amoxicillina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122836171-1867616 05D08_rep_A_Amoxicillina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/249.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152553644-1576971 Batch2A_NCIH647_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100330221-1868932 06F03_rep_D_Stanozololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100330221-1868932 06F03_rep_D_Stanozololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007545_031618-1CRP1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153105085-1577227 Batch3_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224018937-1870397 01C07_rep_D_Cimetidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224018937-1870397 01C07_rep_D_Cimetidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EBM016.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152252562-1576825 Batch2_NCIH2444_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130602737-1877538 13D09_rep_C_Zuclopenthixol_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130602737-1877538 13D09_rep_C_Zuclopenthixol_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G12_id.mzML at line 21
index 612 is out of bounds for axis 0 with size 612
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152611118-1868219 05C02_rep_D_Furosemideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152611118-1868219 05C02_rep_D_Furosemideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/915.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114015166-1874783 11F03_rep_D_Nylidrinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114015166-1874783 11F03_rep_D_Nylidrinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153053703-1577218 Batch3_SKMES1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O15_id_MSn_negative.mzML at line 21
index 349 is out of bounds for axis 0 with size 349
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130211437-1877357 13D01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130211437-1877357 13D01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100905138-1869200 07G05_rep_A_Tobramycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100905138-1869200 07G05_rep_A_Tobramycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100443633-1868990 06D08_rep_D_Digoxinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100443633-1868990 06D08_rep_D_Digoxinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122808532-1875797 08F07_rep_A_Demecarium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122808532-1875797 08F07_rep_A_Demecarium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/4-hydroxybenzaldehyde_neg.mzXML at line 689
Premature end of data in tag peaks line 10087, line 10091, column 81388 (4-hydroxybenzaldehyde_neg.mzXML, line 10091)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_198.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130840914-1877664 13E01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130840914-1877664 13E01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/poxB_P4H8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (poxB_P4H8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00072395.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092153/peak/Sample0003.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/199-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223951725-2227732 PAT45.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-PDAC29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E11_id.mzML at line 21
index 548 is out of bounds for axis 0 with size 548
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_E12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_C_pos_IMS1_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ6_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082793/ccms_peak/raw/MTBLS227/37382-A10-1.mzXML at line 689
Premature end of data in tag peaks line 2035, line 2039, column 24237 (37382-A10-1.mzXML, line 2039)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007569_031718-5CRP2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202229277-1878284 10H06_rep_A_Isocarboxazida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202229277-1878284 10H06_rep_A_Isocarboxazida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_C12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1030.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5B08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GC11_01_11491.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210118_AD_63.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nepI_#1_P5F4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (nepI_#1_P5F4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_011EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/8a/f58b91a22e3eff7cd6ed6fe0677323/input_file/QC_20170209_011EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J17_id_MSn_negative.mzML at line 21
index 282 is out of bounds for axis 0 with size 282
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112718323-1922112 4_C7_GPR1_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112718323-1922112 4_C7_GPR1_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152855899-1577124 Batch3_HT1197_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/scpB_P3H2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (scpB_P3H2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_7_2022_1003_Michael_leming_liver_neg-0.0025.mzML at line 689
Premature end of data in tag binary line 26772, line 26772, column 632645 (1_7_2022_1003_Michael_leming_liver_neg-0.0025.mzML, line 26772)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151211094-1576300 Batch5_NCIH1755_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Blank_pesticide.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122412576-1867403 04C03_rep_D_Triprolidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122412576-1867403 04C03_rep_D_Triprolidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130624940-1877555 13A11_rep_C_Indatraline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130624940-1877555 13A11_rep_C_Indatraline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_184.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/001_Nitrate_Day9_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112202375-1921836 3_E10_GPR1_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112202375-1921836 3_E10_GPR1_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_C5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123319913-1876044 08D01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123319913-1876044 08D01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190130175007.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNH189_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GB3_01_11632.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample141.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_252.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C9_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153232560-1577297 Batch4_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Std_20ppm.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100712993-1869111 07A04_rep_A_Rofecoxiba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100712993-1869111 07A04_rep_A_Rofecoxiba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115024719-1875269 12B10_rep_B_Adrenosteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115024719-1875269 12B10_rep_B_Adrenosteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200633901-1881565 16A03_rep_A_Silodosina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200633901-1881565 16A03_rep_A_Silodosina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_133_2C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHL24.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150741893-1864952 02A04_rep_C_Edrophonium chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150741893-1864952 02A04_rep_C_Edrophonium chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_0124_190125004205.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A17_id_MSn_positive.mzML at line 21
index 498 is out of bounds for axis 0 with size 498
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00072380.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165843691-2227549 Healthy8.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224106375-1870433 01A04_rep_D_Acetazolamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224106375-1870433 01A04_rep_D_Acetazolamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153236191-1577300 Batch4_A427_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153636317-1868706 06D11_rep_C_Epiandrosteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153636317-1868706 06D11_rep_C_Epiandrosteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/60-4_idMsMs_25min_20eV_GE5_01_4255.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A9_id_MSn_negative.mzML at line 21
index 198 is out of bounds for axis 0 with size 198
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_H12_01_12192.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_0126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081288/raw/Ecoli_Study2/Fragmentation/NegativeMode/EcoliB2_ABU83972_SN_cT10_NEG.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_121.mzXML at line 689
Premature end of data in tag msRun line 5, line 22961, column 1 (20121114_121.mzXML, line 22961)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112218725-1873584 10E09_rep_D_Vidarabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112218725-1873584 10E09_rep_D_Vidarabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1D12_160525234506.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/C24_II_ESI+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dsbB_P6C5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (dsbB_P6C5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Methylobacterium_LYG013A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111556106-1921521 1_H7_GAP1_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111556106-1921521 1_H7_GAP1_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153501228-1577418 Batch4_NCIH1048_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130526884-1877509 13C07_rep_C_Proscillaridin_Aa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130526884-1877509 13C07_rep_C_Proscillaridin_Aa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125337871-1876965 12B06_rep_D_Aminohippuric_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125337871-1876965 12B06_rep_D_Aminohippuric_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B13_id_negative.mzML at line 21
index 264 is out of bounds for axis 0 with size 264
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/slt_P3F7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (slt_P3F7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000096940/peak/15_Human fecal community screening for EGT metabolism_targeted_HF21_EGT-d9 quantification_2.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/005_Urea_Day2_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ3_6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_131.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_131.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_G1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_H4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150413232-1924393 1_B7_RGT2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150413232-1924393 1_B7_RGT2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111946573-1921719 2_A7_GAP1_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111946573-1921719 2_A7_GAP1_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GE8_01_17199.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152525884-1576948 Batch1_NCIH1838_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB4G01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007533_031618-1Thr3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hC3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hC3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C11_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bglF_#1_P5B9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (bglF_#1_P5B9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113818542-1922646 3_G10_STE2_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113818542-1922646 3_G10_STE2_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_066ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/4c/7bb8c9db9cfba4f299d7b453349dc9/input_file/QC_20170127_066ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093159220-1879180 14F03_rep_C_Ranolazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093159220-1879180 14F03_rep_C_Ranolazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009565_IBD200_E13_A9.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092701890-1878950 14B04_rep_B_Pivmecillinam_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092701890-1878950 14B04_rep_B_Pivmecillinam_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hD3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hD3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/puuP_#1_P4G1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (puuP_#1_P4G1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD4_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091637070-1878461 13A01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091637070-1878461 13A01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201617858-1881997 16A09_rep_C_Enrofloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201617858-1881997 16A09_rep_C_Enrofloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092938565-1879073 14A01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092938565-1879073 14A01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153220728-1868503 06D08_rep_B_Digoxinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153220728-1868503 06D08_rep_B_Digoxinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0047_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0047_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G13_id.mzML at line 21
index 569 is out of bounds for axis 0 with size 569
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_65.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/129-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nnr_P5G3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (nnr_P5G3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114259312-1874916 12E03_rep_A_Thioperamide_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114259312-1874916 12E03_rep_A_Thioperamide_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LIM2_MS_RA8_01_22536.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123721477-1876238 08E02_rep_C_Tranilasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123721477-1876238 08E02_rep_C_Tranilasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080071/ccms_peak/Dataset 1/Positive3/._NZ Lichen_P_2_lichen_09_F 4_BE4_01_25234.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153803232-1577569 Batch7_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125853119-1877207 13D05_rep_A_Cyclopenthiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125853119-1877207 13D05_rep_A_Cyclopenthiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Spombe_cell_sample3_POS.mzXML at line 689
attributes construct error, line 38, column 79 (Spombe_cell_sample3_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ldtD_P3C11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (ldtD_P3C11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111906443-1872567 10E11_rep_C_Isopropamide_iodidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111906443-1872567 10E11_rep_C_Isopropamide_iodidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091747170-1878516 13G10_rep_D_Risperidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091747170-1878516 13G10_rep_D_Risperidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_19032901_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/eutD_P3C11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (eutD_P3C11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121538168-1866994 04H10_rep_B_Clofilium_tosylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121538168-1866994 04H10_rep_B_Clofilium_tosylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084884/updates/2020-02-03_jamirimoghaddam_67410a78/raw/w20_Lab.mzML at line 689
attributes construct error, line 110231, column 148 (w20_Lab.mzML, line 110231)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125216865-1876903 12C01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125216865-1876903 12C01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hD1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hD1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/28_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088830/raw/AFN07.mzXML at line 689
Specification mandates value for attribute centroiR, line 650838, column 19 (AFN07.mzXML, line 650838)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine75cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine75cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112819870-1922167 4_C4_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112819870-1922167 4_C4_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122232524-1879838 15C10_rep_C_Vardenafila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122232524-1879838 15C10_rep_C_Vardenafila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114406436-1922955 4_H7_STE2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114406436-1922955 4_H7_STE2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_C6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125039046-1862774 03H06_rep_C_Carmofura.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125039046-1862774 03H06_rep_C_Carmofura.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sdaB_P3H3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (sdaB_P3H3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122813106-1880101 15B10_rep_D_Phentermine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122813106-1880101 15B10_rep_D_Phentermine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085693/ccms_peak/MRM-validation cohort/BC MRM 7th batch.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/accA_P3G7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (accA_P3G7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202238105-1878291 10G08_rep_A_Merbrominb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202238105-1878291 10G08_rep_A_Merbrominb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/235.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201947464-1882159 16E09_rep_D_Homoveratrylaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201947464-1882159 16E09_rep_D_Homoveratrylaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control124_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control124_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/017_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A22_id_MSn_negative.mzML at line 21
index 280 is out of bounds for axis 0 with size 280
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170125_040EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/4c/dc67a6f9d343a5bf93f7f2163f2d16/input_file/SH8_20170125_040EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET101.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET101.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130058347-1863280 04G02_rep_A_Lisinoprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130058347-1863280 04G02_rep_A_Lisinoprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1557.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1557.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125407599-1862942 03H06_rep_D_Carmofura.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125407599-1862942 03H06_rep_D_Carmofura.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_A8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_H2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092159918-1878714 14D01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092159918-1878714 14D01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample056_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_17121406_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_G4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122831009-1867612 05A06_rep_A_Ascorbic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122831009-1867612 05A06_rep_A_Ascorbic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/006_Soil_500mMIntra_2_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/287.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170209_043ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/93/46175ace1c3ddc932e164f97ee5987/input_file/SH9_20170209_043ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152747913-1868294 06D11_rep_A_Epiandrosteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152747913-1868294 06D11_rep_A_Epiandrosteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202246980-1878298 10D02_rep_A_Terazosin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202246980-1878298 10D02_rep_A_Terazosin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaY_P3F2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (paaY_P3F2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_136.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_136.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yceG_#2_P4C3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (yceG_#2_P4C3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202049859-1878206 09D09_rep_D_Tazobactama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202049859-1878206 09D09_rep_D_Tazobactama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152532144-1868189 05C10_rep_D_Ritodrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152532144-1868189 05C10_rep_D_Ritodrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysU_P6F3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (cysU_P6F3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/peak/TSQ_Data/mzXML/SOD1_160525113648.mzXML at line 689
Specification mandates value for attribute totIonCu, line 662790, column 12 (SOD1_160525113648.mzXML, line 662790)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150836309-1924618 2_C5_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150836309-1924618 2_C5_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_global_HFD25_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150853734-1924633 2_E4_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150853734-1924633 2_E4_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088017/ccms_peak/12305-gsnor2-15_Treffon-003.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/CORN_AAW4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB6H01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152032378-1576714 Batch1_UMUC3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_0124_190125040130.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200941159-1881703 16E06_rep_A_Phenothiazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200941159-1881703 16E06_rep_A_Phenothiazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121921852-1879693 15B06_rep_B_Amcinonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121921852-1879693 15B06_rep_B_Amcinonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_19040307_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GF6_01_11705.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121845255-1867141 04D11_rep_C_Quinidine_hydrochloride_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121845255-1867141 04D11_rep_C_Quinidine_hydrochloride_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151426827-1924920 4_E3_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151426827-1924920 4_E3_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152332937-1576857 Batch2_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B11_id_MSn_positive.mzML at line 21
index 757 is out of bounds for axis 0 with size 757
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR124h3a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 124692, column 82 (pBlateR124h3a.mzML, line 124692)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample083.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222842888-1869867 01G04_rep_A_Nifedipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222842888-1869867 01G04_rep_A_Nifedipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202210246-1878269 10A06_rep_A_Deferoxamine_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202210246-1878269 10A06_rep_A_Deferoxamine_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113113754-1874387 11A01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113113754-1874387 11A01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112926509-1874309 11F04_rep_A_Liothyronineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112926509-1874309 11F04_rep_A_Liothyronineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170125_065EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ba/60c3f6495caabb40c9fde1f266ee66/input_file/MMW4_20170125_065EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/acmum_murP_P3B3_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (acmum_murP_P3B3_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090549/updates/2023-02-07_bsedio_eb5d1a0f/peak/Madidi_mzXML/MD00647.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092602541-1878904 14E08_rep_B_Nelarabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092602541-1878904 14E08_rep_B_Nelarabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnO_P5F1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (phnO_P5F1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101528578-1869504 07F01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101528578-1869504 07F01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/73-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/394.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122115422-1867260 04D07_rep_C_Bumetanidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122115422-1867260 04D07_rep_C_Bumetanidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control228_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control228_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_04_107_prot_23_IMS_16Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082728/ccms_peak/ST000661/EX00264-lipidomics/Raw data/NEG/20140728_Test.mzXML at line 689
Opening and ending tag mismatch: peaks line 30173 and msRun, line 38620, column 11 (20140728_Test.mzXML, line 38620)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6H03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_27_NOR_54.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_27_NOR_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/395.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_mock_d1_290_lipid__Neg_17Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 34217, column 1 (SysVirol_IFL001_mock_d1_290_lipid__Neg_17Sep13_13-07-01.mzXML, line 34217)
Error processing file: /data/datasets/server/MassIVE/MSV000092960/raw/HILIC_plusDDA/HILIC/20221111-JC-471_HILIC_183_01.mzML at line 689
Invalid character: Char 0x0 out of allowed range
, line 82985, column 60811 (20221111-JC-471_HILIC_183_01.mzML, line 82985)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_55_RIN_25.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_55_RIN_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/BeautyProducts_Vol4/BP2_01_17293.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person2_Plasma_POS.mzXML at line 689
attributes construct error, line 38, column 74 (Person2_Plasma_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_rerun_H4_01_11783.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151908957-1576647 Batch5_COLO205_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122400333-1867393 04E05_rep_D_Diethylcarbamazine_citrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122400333-1867393 04E05_rep_D_Diethylcarbamazine_citrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089747/raw/profiling/POS all samples no bl/ro125_bn7_id15_br3_tr1_NEL_hops_Seg1Ev1.mzXML at line 689
Extra content at the end of the document, line 12396, column 1 (ro125_bn7_id15_br3_tr1_NEL_hops_Seg1Ev1.mzXML, line 12396)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202222860-1878279 10A10_rep_A_Sulfanilamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202222860-1878279 10A10_rep_A_Sulfanilamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_D6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_D6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/astE_#1_P5H10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (astE_#1_P5H10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (16).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111640084-1871586 10C03_rep_B_Sulfamethizoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111640084-1871586 10C03_rep_B_Sulfamethizoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150459363-1924431 1_F11_RGT2_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150459363-1924431 1_F11_RGT2_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_02062001_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/625.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Blank_pesticide_Swabs.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_E11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153033221-1577203 Batch3_MIAPACA2_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_G1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pagP_P3E3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (pagP_P3E3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123203153-1875983 08B06_rep_B_Tenatoprazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123203153-1875983 08B06_rep_B_Tenatoprazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/TM-plasma-S6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_QC_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_81.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A2_id_MSn_positive_2uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_133_3B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145606988-1863928 02B03_rep_A_Zimelidine dihydrochloride monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145606988-1863928 02B03_rep_A_Zimelidine dihydrochloride monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125235270-1876917 12C07_rep_D_Fluspirilena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125235270-1876917 12C07_rep_D_Fluspirilena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152505341-1576931 Batch1_CALU6_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/epmB_P3A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (epmB_P3A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pfo_P4E1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (pfo_P4E1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V4_EDTAk2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125917592-1863197 04G06_rep_A_Bupivacaine_hydrochloride_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125917592-1863197 04G06_rep_A_Bupivacaine_hydrochloride_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_08P_C3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122148282-1867287 04H07_rep_D_Glibenclamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122148282-1867287 04H07_rep_D_Glibenclamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124507909-1876613 09F10_rep_A_Hexestrolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124507909-1876613 09F10_rep_A_Hexestrolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_77.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/PDI-flfl-plasma-VLDL-25-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/793.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152347094-1868109 05D11_rep_D_Droperidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152347094-1868109 05D11_rep_D_Droperidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Blank_pesticide_Swabs_170403154151.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yidK_#4_P4A3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (yidK_#4_P4A3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_07_leg_muscle_control_skin_POS.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_07_leg_muscle_control_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153836129-1577597 Batch7_MIAPACA2_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_C7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_092b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S64.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S64.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_49.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control44_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control44_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180411_ES_H3K_batch7_repA_87.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H12_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151758102-1576588 Batch3_5637_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine63cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine63cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092627/ccms_peak/Raw_Spectrum_Files/ALZ_FCX_P_E3E3_AD_02Feb18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092833908-1879021 14C08_rep_B_Ticarcillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092833908-1879021 14C08_rep_B_Ticarcillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_G4_id_negative.mzML at line 21
index 259 is out of bounds for axis 0 with size 259
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124927614-1876777 12C03_rep_C_Abacavir_Sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124927614-1876777 12C03_rep_C_Abacavir_Sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223918358-2227703 PAT37.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/menF_P3G5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (menF_P3G5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152300082-1576831 Batch2_NCIH358_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092507102-1878861 14B08_rep_B_Oxprenolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092507102-1878861 14B08_rep_B_Oxprenolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153310619-1868542 06G11_rep_B_Ceforanidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153310619-1868542 06G11_rep_B_Ceforanidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F14_id_MSn_negative.mzML at line 21
index 326 is out of bounds for axis 0 with size 326
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case218_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case218_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180907_ES_H3K_batch1_repA_13.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123529064-1876149 08G02_rep_C_Mizolastineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123529064-1876149 08G02_rep_C_Mizolastineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223223951-1870033 01D03_rep_B_Epirizolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223223951-1870033 01D03_rep_B_Epirizolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112222366-1873587 10A09_rep_D_Sulfadimethoxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112222366-1873587 10A09_rep_D_Sulfadimethoxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100208510-1868868 06F08_rep_D_Meclozine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100208510-1868868 06F08_rep_D_Meclozine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_15_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_15_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG017B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101707138-1869584 07B07_rep_C_Tiaprofenic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101707138-1869584 07B07_rep_C_Tiaprofenic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009509_IBD200_E10_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124148802-1862236 03E08_rep_A_Tiboloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124148802-1862236 03E08_rep_A_Tiboloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122406345-1867398 04D08_rep_D_Labetalol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122406345-1867398 04D08_rep_D_Labetalol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153559641-1577466 Batch5_HCT116_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hybA_P3G11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (hybA_P3G11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_H3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007628_032118-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person24_RBC_elder_POS.mzXML at line 689
attributes construct error, line 41, column 81 (Person24_RBC_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp2/20180309173102563-1989050 wound 5db.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102101228-1869775 07F02_rep_D_Pirenperonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102101228-1869775 07F02_rep_D_Pirenperonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095362/raw/MS2_VcR_2_18_1_7790.mzML at line 689
Premature end of data in tag chromatogramList line 661628, line 661629, column 1 (MS2_VcR_2_18_1_7790.mzML, line 661629)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GB8_01_16924.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_131_3C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152258833-1576830 Batch2_NCIH358_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/227.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150003941-1864119 02D01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150003941-1864119 02D01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087808/raw/RIGHT_SSL_EI_sleep_STER_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1628.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1628.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150542979-1864860 02F05_rep_C_Diltiazem hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150542979-1864860 02F05_rep_C_Diltiazem hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091760/raw/TC1_pellet.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123221306-1867791 05D07_rep_B_Adenosine_5'-monophosphate_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123221306-1867791 05D07_rep_B_Adenosine_5'-monophosphate_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD2_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150415175954.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S113.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S113.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151402838-1576393 Batch6_NCIH2171_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151156481-1576288 Batch5_NCIH446_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152710747-1868265 06G02_rep_A_Tropisetron_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152710747-1868265 06G02_rep_A_Tropisetron_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122203779-1879816 15G09_rep_C_Cilnidipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122203779-1879816 15G09_rep_C_Cilnidipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124918207-1876770 12D04_rep_C_2-Aminobenzenesulfonamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124918207-1876770 12D04_rep_C_2-Aminobenzenesulfonamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201220114-1881821 16G08_rep_B_Risedronic_acid_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201220114-1881821 16G08_rep_B_Risedronic_acid_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E16_id_MSn_positive.mzML at line 21
index 701 is out of bounds for axis 0 with size 701
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_B6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR224h3a.mzML at line 689
Specification mandates value for attribute van, line 199517, column 78 (pMIBSDR224h3a.mzML, line 199517)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hD1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hD1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202134541-1882242 16G11_rep_D_Latanoprostb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202134541-1882242 16G11_rep_D_Latanoprostb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153023713-1577196 Batch3_NCIH460DNP53_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2C01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201708543-1878036 09D10_rep_C_Ibandronate_sodium_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201708543-1878036 09D10_rep_C_Ibandronate_sodium_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083774/ccms_peak/Metabolomics/Pos_78.mzML at line 21
index 333 is out of bounds for axis 0 with size 333
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_162.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_162.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_79.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_E9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD6_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G1_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095118/raw/LBD75-80%-MICELIO_POS_1-28_01_698.mzML at line 689
Premature end of data in tag index line 160282, line 160283, column 1 (LBD75-80%-MICELIO_POS_1-28_01_698.mzML, line 160283)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_111.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130111603-1863291 04D11_rep_A_Quinidine_hydrochloride_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130111603-1863291 04D11_rep_A_Quinidine_hydrochloride_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_103.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_103.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151145945-1865142 02D03_rep_D_Metolazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151145945-1865142 02D03_rep_D_Metolazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/entC_P3C1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (entC_P3C1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223130486-1869993 01A10_rep_A_Hydrochlorothiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223130486-1869993 01A10_rep_A_Hydrochlorothiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150721059-1924553 2_A10_RGT2_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150721059-1924553 2_A10_RGT2_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_07.mzXML at line 689
Premature end of data in tag peaks line 20541, line 20545, column 3655 (20121114_07.mzXML, line 20545)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_G3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113213135-1922329 1_A7_IZH2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113213135-1922329 1_A7_IZH2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F4_id_MSn_positive.mzML at line 21
index 487 is out of bounds for axis 0 with size 487
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MSB13B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dauA_P3E11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (dauA_P3E11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_F2_01_12211.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/BAT_raw files/Lumos_ISAS_BAT_QC2.mzML at line 689
Premature end of data in tag spectrumList line 92, line 26135, column 1 (Lumos_ISAS_BAT_QC2.mzML, line 26135)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091656457-1878476 13A05_rep_D_Methacycline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091656457-1878476 13A05_rep_D_Methacycline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111518148-1871523 10H10_rep_B_Pridinol_methanesulfonate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111518148-1871523 10H10_rep_B_Pridinol_methanesulfonate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_5_B_rep_3_B-F4_1_5557.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A1_id_MSn_positive_20240410180640.mzML at line 21
index 658 is out of bounds for axis 0 with size 658
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR331_5h2a.mzML at line 689
Opening and ending tag mismatch: binary line 131266 and scanWindow, line 131266, column 2463 (pBlateR331_5h2a.mzML, line 131266)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/guaB_#1_P4F7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (guaB_#1_P4F7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223859072-1870336 01E06_rep_C_Naproxenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223859072-1870336 01E06_rep_C_Naproxenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/270.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S005_0126_190128135429.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150811541-1864975 02A10_rep_D_Busulfanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150811541-1864975 02A10_rep_D_Busulfanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-018_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/472.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample088.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/016_100uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093027216-1879109 14A10_rep_C_Oxyphenbutazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093027216-1879109 14A10_rep_C_Oxyphenbutazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_67_Blank.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_67_Blank.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S05_0126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control164_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control164_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224040383-1870413 01D11_rep_D_Niclosamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224040383-1870413 01D11_rep_D_Niclosamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180829_ES_H3K_batch11_repB_153.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D9_id_MSn_positive.mzML at line 21
index 707 is out of bounds for axis 0 with size 707
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223433302-1870131 01G09_rep_B_Isoxsuprine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223433302-1870131 01G09_rep_B_Isoxsuprine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_A10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/567-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121718388-1867073 04A11_rep_C_Alprenolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121718388-1867073 04A11_rep_C_Alprenolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152814313-1868314 06E07_rep_A_Carteolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152814313-1868314 06E07_rep_A_Carteolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123126341-1867747 05B02_rep_B_Tremorine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123126341-1867747 05B02_rep_B_Tremorine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/184-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152331694-1576856 Batch2_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person02_blood_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 101 (Person02_blood_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100637088-1869081 07G08_rep_A_Molsidominea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100637088-1869081 07G08_rep_A_Molsidominea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G9_id_MSn_positive.mzML at line 21
index 601 is out of bounds for axis 0 with size 601
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/259.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G05Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153309289-1577327 Batch4_NCIH2009_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_G3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfD_P5H4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (hyfD_P5H4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD3_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD3_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202453648-1878398 10A08_rep_A_Liranaftatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202453648-1878398 10A08_rep_A_Liranaftatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111551032-1921517 1_F2_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111551032-1921517 1_F2_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201655211-1878026 09F06_rep_C_Venlafaxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201655211-1878026 09F06_rep_C_Venlafaxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIAJ07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114831433-1875177 12E11_rep_B_Protriptyline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114831433-1875177 12E11_rep_B_Protriptyline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNB091_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113921111-1922701 3_G1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113921111-1922701 3_G1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007512_031618-0.01Thr3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123336966-1876058 08D07_rep_B_Fomepizolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123336966-1876058 08D07_rep_B_Fomepizolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D9_id_MSn_positive.mzML at line 21
index 424 is out of bounds for axis 0 with size 424
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2E03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc046_pos.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc046_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET116.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET116.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121932464-1879701 15G02_rep_B_Gatifloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121932464-1879701 15G02_rep_B_Gatifloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201346112-1877888 09C02_rep_C_Pranlukasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201346112-1877888 09C02_rep_C_Pranlukasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150852534-1924632 2_B1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150852534-1924632 2_B1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113646157-1874615 11B02_rep_C_Auranofinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113646157-1874615 11B02_rep_C_Auranofinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N13_id_MSn_positive.mzML at line 21
index 570 is out of bounds for axis 0 with size 570
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_05_881_prot_39_IMS_26Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112411646-1921949 3_H8_GPR1_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112411646-1921949 3_H8_GPR1_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223928262-2227712 Healthy2.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hA2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hA2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_C9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_5_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-blank (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223751128-1870283 01F03_rep_C_Carbamazepinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223751128-1870283 01F03_rep_C_Carbamazepinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_B5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_B5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Acido_24295_A1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113955890-1922732 3_G7_STE2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113955890-1922732 3_G7_STE2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28022021_Batch02_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151941105-1867916 05G08_rep_C_Carbetapentane_citratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151941105-1867916 05G08_rep_C_Carbetapentane_citratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person12_plasma_youth_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person12_plasma_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151120328-1865122 02F09_rep_D_Terfenadinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151120328-1865122 02F09_rep_D_Terfenadinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GA5_01_11616.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/466-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101203613-1869342 07B04_rep_B_Omeprazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101203613-1869342 07B04_rep_B_Omeprazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V8_LH.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_C2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122819398-1867603 05A08_rep_A_Cefoperazone_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122819398-1867603 05A08_rep_A_Cefoperazone_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ3_2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114213198-1922854 4_B9_STE2_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114213198-1922854 4_B9_STE2_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_19032111_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR13h2a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/182_142.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_O10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125903787-1877215 13B02_rep_A_Remoxipride_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125903787-1877215 13B02_rep_A_Remoxipride_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_C2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_A9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_C2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1114.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100956237-1869240 07G07_rep_B_Pregnenoloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100956237-1869240 07G07_rep_B_Pregnenoloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145906875-1864073 02D10_rep_A_Picotamide monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145906875-1864073 02D10_rep_A_Picotamide monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124633596-1876677 09E05_rep_A_Mirabegronb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124633596-1876677 09E05_rep_A_Mirabegronb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125604989-1877077 12A03_rep_D_Bemegridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125604989-1877077 12A03_rep_D_Bemegridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_11P_A3_id_negative.mzML at line 21
index 206 is out of bounds for axis 0 with size 206
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydfG_P3D6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ydfG_P3D6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/210.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-5-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C8_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202117942-1882229 16D02_rep_D_Aminacrinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202117942-1882229 16D02_rep_D_Aminacrinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc048_pos.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc048_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125805674-1863137 04G11_rep_A_Mebeverine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125805674-1863137 04G11_rep_A_Mebeverine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/143_115_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223202638-1870017 01C07_rep_B_Cimetidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223202638-1870017 01C07_rep_B_Cimetidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/esculetin.mzXML at line 689
Premature end of data in tag peaks line 5407, line 5411, column 24045 (esculetin.mzXML, line 5411)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223715884-2227597 PAT51.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4C09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/001_CRa_H9M5_M470_Blank_01_high_pos.mzXML at line 689
Premature end of data in tag peaks line 12845, line 12849, column 40429 (001_CRa_H9M5_M470_Blank_01_high_pos.mzXML, line 12849)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G16_id.mzML at line 21
index 530 is out of bounds for axis 0 with size 530
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_92.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6A12_160602204258.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122758098-1867586 05C07_rep_A_Maprotiline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122758098-1867586 05C07_rep_A_Maprotiline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150951532-1924683 2_E1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150951532-1924683 2_E1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/834.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092359536-1878808 14A02_rep_A_Etomidatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092359536-1878808 14A02_rep_A_Etomidatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092221/ccms_peak/LuxWater_2019-2022/2022/Jan/22-00034_NEG.mzML at line 21
index 422 is out of bounds for axis 0 with size 422
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_59_AC+_49.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153237335-1868516 06A07_rep_B_Delavirdinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153237335-1868516 06A07_rep_B_Delavirdinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D23_id_MSn_negative.mzML at line 21
index 322 is out of bounds for axis 0 with size 322
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125628243-1863056 03A08_rep_D_Riluzole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125628243-1863056 03A08_rep_D_Riluzole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5D002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151450452-1576433 Batch7_KM12_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201508817-1877948 09G10_rep_C_Trioxsalena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201508817-1877948 09G10_rep_C_Trioxsalena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tam_P3D11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (tam_P3D11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_60_RIN_49.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_60_RIN_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Liver_raw files/Lumos_ISAS_liver_QC2.mzML at line 689
Premature end of data in tag spectrumList line 92, line 54435, column 1 (Lumos_ISAS_liver_QC2.mzML, line 54435)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125934499-1877239 13E02_rep_A_Alfadolone_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125934499-1877239 13E02_rep_A_Alfadolone_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202414011-1878367 10E10_rep_A_Sulfameterb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202414011-1878367 10E10_rep_A_Sulfameterb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F5_id_MSn_negative.mzML at line 21
index 339 is out of bounds for axis 0 with size 339
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-faux (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bioA_P3F9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (bioA_P3F9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E6_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET120.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET120.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D14_id_MSn_positive.mzML at line 21
index 397 is out of bounds for axis 0 with size 397
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124027172-1876386 08F01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124027172-1876386 08F01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S70.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S70.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Spombe_cell_sample2_NEG.mzXML at line 689
attributes construct error, line 38, column 79 (Spombe_cell_sample2_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113514409-1874542 11E01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113514409-1874542 11E01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYC002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GA1_01_16901.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12onlyDiluted_Replicate1_Level1_MSMS_neg.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E23_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O21_id_MSn_positive.mzML at line 21
index 585 is out of bounds for axis 0 with size 585
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_55_NOR_48.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_55_NOR_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121136361-1879343 14E07_rep_D_D-cycloserineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121136361-1879343 14E07_rep_D_D-cycloserineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yfbR_P4H2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (yfbR_P4H2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200612232-1881549 16E04_rep_A_Clopidogrela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200612232-1881549 16E04_rep_A_Clopidogrela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111731368-1871626 10C08_rep_B_Aprepitantb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111731368-1871626 10C08_rep_B_Aprepitantb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_A3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S90.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S90.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101642867-1869564 07B02_rep_C_Metixene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101642867-1869564 07B02_rep_C_Metixene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153349042-1577359 Batch5_HDQP1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/845.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lysP_P4D6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (lysP_P4D6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_E8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009453_IBD200_E7_B4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152029721-1576712 Batch1_UMUC3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_E3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/469.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153004307-1577182 Batch3_MGHU3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroC_P6C12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (aroC_P6C12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD5_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150524568-1924453 1_A3_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150524568-1924453 1_A3_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152424726-1576898 Batch2_NCIH596_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_19_Liver_EtOH_control_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_19_Liver_EtOH_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153910682-1577626 Batch6_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yigB_P3C4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (yigB_P3C4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/008_1217_1_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151714927-1925057 4_B3_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151714927-1925057 4_B3_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB1H05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125757254-1863130 04F06_rep_A_Pergolide_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125757254-1863130 04F06_rep_A_Pergolide_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EBM006A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153816165-1577580 Batch6_CCRFCEM_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121340425-1879435 15F03_rep_A_Atorvastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121340425-1879435 15F03_rep_A_Atorvastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ilvB_P4A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (ilvB_P4A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/HFS_vehicle_T0_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_E11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_P_E3E4_AD_31Jan18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153405936-1577373 Batch3_KU1919_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/torA_P3H11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (torA_P3H11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/420.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_131_2B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151830573-1576615 Batch7_UACC257_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007574_031718-5CRP4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD6_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4C3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4C3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122746380-1867576 05C04_rep_A_Desipramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122746380-1867576 05C04_rep_A_Desipramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A18_id_MSn_negative_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHD10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC01_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_119.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GD4_01_11669.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample106.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hB3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hB3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_C3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091808404-1878533 13H02_rep_D_Halofantrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091808404-1878533 13H02_rep_D_Halofantrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081118/ccms_peak/Beers19_ms2ldaPLUS/NEGmode/Beer_multibeers_18_T10_NEG.mzXML at line 689
Extra content at the end of the document, line 203405, column 1 (Beer_multibeers_18_T10_NEG.mzXML, line 203405)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ddpX_P4G7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (ddpX_P4G7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165725922-2227478 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P3_id_MSn_negative.mzML at line 21
index 359 is out of bounds for axis 0 with size 359
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybiV_P3F6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ybiV_P3F6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H7_id_MSn_positive.mzML at line 21
index 527 is out of bounds for axis 0 with size 527
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ4_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2L001A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152226175-1576804 Batch1_HX147_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-3-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B14_id.mzML at line 21
index 615 is out of bounds for axis 0 with size 615
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_18072701_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150253165-1924326 1_F9_RGT2_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150253165-1924326 1_F9_RGT2_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122440895-1867426 04F10_rep_D_Mifepristonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122440895-1867426 04F10_rep_D_Mifepristonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_68.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207133003736-1733934 1pool Skin 3 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151418451-1576406 Batch7_HARA_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD4_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ynfF_#1_P5B10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (ynfF_#1_P5B10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S3cells_6_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145839337-1864051 02A03_rep_A_Fulvestranta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145839337-1864051 02A03_rep_A_Fulvestranta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113929987-1922709 3_B9_STE2_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113929987-1922709 3_B9_STE2_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152014440-1576700 Batch1_HCC1395_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125014108-1876812 12D01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125014108-1876812 12D01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD1_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223505605-1870156 01C10_rep_B_Antipyrineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223505605-1870156 01C10_rep_B_Antipyrineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152818071-1868317 06F03_rep_A_Stanozololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152818071-1868317 06F03_rep_A_Stanozololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/003_1016_3_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113121619-1922284 1_F9_IZH2_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113121619-1922284 1_F9_IZH2_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR331_5h3a.mzML at line 689
Opening and ending tag mismatch: binary line 277846 and binaryDataArray, line 277848, column 31 (pMIBSDR331_5h3a.mzML, line 277848)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122755503-1880087 15G01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122755503-1880087 15G01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control230_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control230_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111425898-1871483 10E07_rep_B_Tinidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111425898-1871483 10E07_rep_B_Tinidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_036ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e8/f00f8bad4e34e70e2b4881389b47b6/input_file/QC_20170209_036ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100218859-1868876 06E06_rep_D_Cyclobenzaprine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100218859-1868876 06E06_rep_D_Cyclobenzaprine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case48_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case48_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-062.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-062.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/596.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122541296-1867475 05G04_rep_A_Nicardipine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122541296-1867475 05G04_rep_A_Nicardipine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075187.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111534842-1871536 10H04_rep_B_Cloperastine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111534842-1871536 10H04_rep_B_Cloperastine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153320418-1577336 Batch5_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153544134-1577453 Batch4_NCIH1563_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201644731-1878018 09A06_rep_C_Flurandrenolidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201644731-1878018 09A06_rep_C_Flurandrenolidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113858545-1922681 3_C11_STE2_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113858545-1922681 3_C11_STE2_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153724269-1868745 06E04_rep_C_Gabazine_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153724269-1868745 06E04_rep_C_Gabazine_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152413284-1576889 Batch2_VMCUB1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112253386-1921880 3_C10_GPR1_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112253386-1921880 3_C10_GPR1_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hD3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hD3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112710389-1922105 4_D4_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112710389-1922105 4_D4_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/XYT-20d.mzXML at line 689
Premature end of data in tag peaks line 2373, line 2377, column 7671 (XYT-20d.mzXML, line 2377)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121818308-1867120 04E11_rep_C_Sulfinpyrazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121818308-1867120 04E11_rep_C_Sulfinpyrazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124746508-1862636 03C07_rep_B_Cloxacillin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124746508-1862636 03C07_rep_B_Cloxacillin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153246141-1868523 06B05_rep_B_Amlodipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153246141-1868523 06B05_rep_B_Amlodipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123105393-1875936 08B05_rep_A_Dacarbazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123105393-1875936 08B05_rep_A_Dacarbazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114356379-1922946 4_E9_STE2_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114356379-1922946 4_E9_STE2_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-037_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_A6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170125_019EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/dd/95834b70ea4846ab8895766e678519/input_file/SH9_20170125_019EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201324028-1877872 09C08_rep_B_Acefyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201324028-1877872 09C08_rep_B_Acefyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153058521-1868439 06F10_rep_B_Butalbitalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153058521-1868439 06F10_rep_B_Butalbitalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0002_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ3_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124655330-1862595 03E09_rep_B_Trimethoprim_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124655330-1862595 03E09_rep_B_Trimethoprim_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223108186-1869976 01G03_rep_A_Homatropine hydrobromide (R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223108186-1869976 01G03_rep_A_Homatropine hydrobromide (R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111958282-1921729 2_G2_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111958282-1921729 2_G2_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBmegR13h2b.mzML at line 689
Opening and ending tag mismatch: binary line 89546 and spectrum, line 89595, column 20 (pBmegR13h2b.mzML, line 89595)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_E12_id_positive.mzML at line 21
index 351 is out of bounds for axis 0 with size 351
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H3_id_MSn_negative.mzML at line 21
index 346 is out of bounds for axis 0 with size 346
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-034.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-034.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124147434-1862235 03E08_rep_A_Tibolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124147434-1862235 03E08_rep_A_Tibolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121850395-1867145 04A07_rep_C_Pinacidilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121850395-1867145 04A07_rep_C_Pinacidilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132959797-1733931 1fb Wound5D 2 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/371.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114515577-1875026 12G08_rep_A_Prazosin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114515577-1875026 12G08_rep_A_Prazosin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151639447-1576523 Batch7_NCIH441_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Geotrichum_candidum_BW237D_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GA10_01_17018.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Blank_pesticide_170403045126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111411474-1871472 10D01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111411474-1871472 10D01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200926287-1881692 16G06_rep_A_Ampiroxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200926287-1881692 16G06_rep_A_Ampiroxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_47_AC+_54.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151555496-1576486 Batch7_MIAPACA2_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_B4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130459991-1877488 13D11_rep_B_Lymecyclineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130459991-1877488 13D11_rep_B_Lymecyclineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/XYT-31d.mzXML at line 689
Premature end of data in tag peaks line 4121, line 4125, column 7672 (XYT-31d.mzXML, line 4125)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_68.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4H07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pETDuet1/withKBr/140513pEtDuet.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222745090-1869823 01A03_rep_A_Allantoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222745090-1869823 01A03_rep_A_Allantoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_A7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111642684-1871588 10D09_rep_B_Ribostamycin_sulfate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111642684-1871588 10D09_rep_B_Ribostamycin_sulfate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HaCaT_2_RESV_200uM_POS.mzXML at line 689
attributes construct error, line 38, column 83 (HaCaT_2_RESV_200uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_AW4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101525926-1869502 07D04_rep_C_Norcyclobenzaprineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101525926-1869502 07D04_rep_C_Norcyclobenzaprineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR17_5h1a.mzML at line 689
Opening and ending tag mismatch: binary line 216904 and spectrum, line 216957, column 20 (pMIBSDR17_5h1a.mzML, line 216957)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092600064-1878902 14H08_rep_B_Azaperonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092600064-1878902 14H08_rep_B_Azaperonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152635742-1577006 Batch1_7860_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_150.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_150.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/ka viqqi/converted coba2/200609_sample_43.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125158775-1876889 12D07_rep_C_Nitrendipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125158775-1876889 12D07_rep_C_Nitrendipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210108_AD_73.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007673_032118-1CRP2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111645361-1871590 10D07_rep_B_Diethylstilbestrolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111645361-1871590 10D07_rep_B_Diethylstilbestrolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180902_ES_H3K_batch1_repB_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yghA_P3G7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (yghA_P3G7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151930209-1576665 Batch7_NCIH510_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/171-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR23h2a.mzML at line 689
Specification mandates value for attribute unitAccP8iegT, line 14795, column 134 (pBlateR23h2a.mzML, line 14795)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101212374-1869349 07D05_rep_B_Pyrazinamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101212374-1869349 07D05_rep_B_Pyrazinamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yeaP_P4A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (yeaP_P4A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152852368-1577121 Batch3_NCIH322M_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200726177-1881604 16D05_rep_A_Perospironeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200726177-1881604 16D05_rep_A_Perospironeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H2_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ5_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122132114-1879792 15H05_rep_C_Rufloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122132114-1879792 15H05_rep_C_Rufloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acrD_P3E2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (acrD_P3E2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223858881-2227687 Healthy5.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person25_plasma_elder_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person25_plasma_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K4_id_MSn_positive.mzML at line 21
index 722 is out of bounds for axis 0 with size 722
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5C3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5C3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlB2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraControlB2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I6_id_negative.mzML at line 21
index 251 is out of bounds for axis 0 with size 251
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E18_id_MSn_negative.mzML at line 21
index 356 is out of bounds for axis 0 with size 356
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123016619-1875897 08A02_rep_A_Ziprasidone__Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123016619-1875897 08A02_rep_A_Ziprasidone__Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150948168-1924680 2_D8_RGT2_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150948168-1924680 2_D8_RGT2_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151723551-1576560 Batch7_SKMEL2_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/670.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_195.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125810558-1863141 04G01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125810558-1863141 04G01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-5-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125042112-1876833 12D06_rep_C_Lorglumide_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125042112-1876833 12D06_rep_C_Lorglumide_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124452861-1862382 03H04_rep_A_Hyoscyamine_(L)_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124452861-1862382 03H04_rep_A_Hyoscyamine_(L)_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223958608-2227738 Healthy6.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_63_AC+_49.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-8-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp2/20180309173114080-1989062 skin 5db.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_elow (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101329634-1869411 07E05_rep_B_Tiabendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101329634-1869411 07E05_rep_B_Tiabendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201700668-1882029 16G10_rep_C_Oxymetholonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201700668-1882029 16G10_rep_C_Oxymetholonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaL_P4B8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (waaL_P4B8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123552892-1876168 08F10_rep_C_Diflorasone_Diacetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123552892-1876168 08F10_rep_C_Diflorasone_Diacetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170127_034ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/03/4492790889ec592c426c163081b30f/input_file/SH10_20170127_034ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_cell lysate/mzML/UDP3_DMSO_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_47.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_47.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A9_id_MSn_positive.mzML at line 21
index 489 is out of bounds for axis 0 with size 489
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8H05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc1_PBST0_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125256376-1876933 12E03_rep_D_Thioperamide_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125256376-1876933 12E03_rep_D_Thioperamide_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180505_ES_H3K_batch4_repD_50.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112344714-1874038 10E08_rep_D_Guanadrel_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112344714-1874038 10E08_rep_D_Guanadrel_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case121_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case121_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_16092759_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fabH_P5C12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (fabH_P5C12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cycA_#1_P4D2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (cycA_#1_P4D2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S41.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S41.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111537474-1871538 10A08_rep_B_Liranaftateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111537474-1871538 10A08_rep_B_Liranaftateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/CPV_P_rep_4_B-C3_1_5842.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124436669-1876588 09G11_rep_A_Doxofyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124436669-1876588 09G11_rep_A_Doxofyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153252107-1577313 Batch4_SW156_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122000423-1867200 04F07_rep_C_Acemetacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122000423-1867200 04F07_rep_C_Acemetacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B5_id_negative.mzML at line 21
index 229 is out of bounds for axis 0 with size 229
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2D01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111859899-1872562 10D03_rep_C_Phenazopyridine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111859899-1872562 10D03_rep_C_Phenazopyridine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mntH_P3E10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (mntH_P3E10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123253495-1867817 05F08_rep_B_Nafronyl_oxalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123253495-1867817 05F08_rep_B_Nafronyl_oxalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113229406-1922343 1_D7_IZH2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113229406-1922343 1_D7_IZH2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltK_#4_P3A12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (gltK_#4_P3A12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125157499-1876888 12E11_rep_C_Protriptyline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125157499-1876888 12E11_rep_C_Protriptyline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_B3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GC9_01_11858.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092807144-1879000 14D11_rep_B_Methiazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092807144-1879000 14D11_rep_B_Methiazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/679.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Cryobacterium_LYG002A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD6_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD6_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4D07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case83_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case83_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_81.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132946016-1733920 1fb Skin 2 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152417042-1576892 Batch2_NCIH520_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A14_id_MSn_positive.mzML at line 21
index 663 is out of bounds for axis 0 with size 663
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151617031-1576504 Batch7_7860_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/005_Urea_Day2_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/635.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_52.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_52.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102050285-1869766 07A03_rep_D_Cefotiam_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102050285-1869766 07A03_rep_D_Cefotiam_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/temp/SYL-TSQ-13-06-21_L74cbz.mzXML at line 689
Premature end of data in tag msRun line 5, line 571895, column 1 (SYL-TSQ-13-06-21_L74cbz.mzXML, line 571895)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_G12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092107359-1878673 14G11_rep_A_Parbendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092107359-1878673 14G11_rep_A_Parbendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A24_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151324003-1924866 3_G7_SNF3_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151324003-1924866 3_G7_SNF3_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pflB_P4D10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (pflB_P4D10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113711996-1922588 3_A5_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113711996-1922588 3_A5_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person08_blood_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 100 (Person08_blood_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J16_id_MSn_positive_20240503085832.mzML at line 21
index 533 is out of bounds for axis 0 with size 533
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_04_liver_RESV_oral_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_04_liver_RESV_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_E1_01_12208.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151146992-1576280 Batch5_LUDLU1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125902492-1877214 13G05_rep_A_Nifurtimoxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125902492-1877214 13G05_rep_A_Nifurtimoxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152820811-1577094 Batch3_PANC0327_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GG3_01_12165.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C5_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007728_032218-buffer ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112852684-1874283 11D09_rep_A_Iocetamic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112852684-1874283 11D09_rep_A_Iocetamic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample010.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_5_1_rep_1_B-C8_1_5847.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152812463-1577087 Batch3_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123228597-1867797 05D08_rep_B_Amoxicillinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123228597-1867797 05D08_rep_B_Amoxicillinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_98.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153058851-1577222 Batch3_MIAPACA2_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH30.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/10 Sept 2021/converted/210916_tanaka07.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1556.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1556.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malS_P3G2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (malS_P3G2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150723320-1924555 2_H8_RGT2_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150723320-1924555 2_H8_RGT2_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101049445-1869283 07C05_rep_B_Etifenina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101049445-1869283 07C05_rep_B_Etifenina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101939444-1869708 07B08_rep_D_Vancomycin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101939444-1869708 07B08_rep_D_Vancomycin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_084a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_A12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130606521-1877541 13H07_rep_C_Alcuronium_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130606521-1877541 13H07_rep_C_Alcuronium_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw4_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0044_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0044_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/541-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007505_031618-0.01Thr1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101110875-1869300 07D02_rep_B_Fluoxetine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101110875-1869300 07D02_rep_B_Fluoxetine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA25.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GD3_01_11668.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/306.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153110187-1577231 Batch3_NCIH661_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_17111316_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aas_P3B7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (aas_P3B7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122741521-1880076 15A06_rep_D_Fleroxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122741521-1880076 15A06_rep_D_Fleroxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A4_id.mzML at line 21
index 568 is out of bounds for axis 0 with size 568
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaJ_P3F3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (paaJ_P3F3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_B7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1842.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1842.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_21_CNR_52.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_21_CNR_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/126-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075325.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_blood_1h_NEG.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer2_blood_1h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201718991-1882043 16F05_rep_C_Histamine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201718991-1882043 16F05_rep_C_Histamine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201923109-1878138 09D02_rep_D_Dydrogesteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201923109-1878138 09D02_rep_D_Dydrogesteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153340248-1577352 Batch5_NCIH23_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K18_id_MSn_positive.mzML at line 21
index 761 is out of bounds for axis 0 with size 761
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydiF_#1_P3B12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (ydiF_#1_P3B12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H13_id_MSn_negative.mzML at line 21
index 336 is out of bounds for axis 0 with size 336
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190131164006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081911/ccms_peak/160113_Spermidin_V.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153539364-1577449 Batch5_HT29_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087689/ccms_peak/Hela_bulk/OR11_20160122_PG_HeLa_CVB3_CT_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085480/raw/190627_Irina_OMZ_ETNP18_RerunFractions/mzML/ETNP18_SecChla_1_C.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (ETNP18_SecChla_1_C.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100952540-1869237 07G01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100952540-1869237 07G01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114238813-1922877 4_A10_STE2_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114238813-1922877 4_A10_STE2_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc019_pos.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc019_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/372.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151658263-1576539 Batch7_NCIH226_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHF12.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V2_LH_PSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087069/ccms_peak/BRB Liquid Convert pos/BBR_R17500_N40_I10e6_E30_pos_06292020.mzML at line 689
Premature end of data in tag binary line 117896, line 117896, column 166825 (BBR_R17500_N40_I10e6_E30_pos_06292020.mzML, line 117896)
Error processing file: /data/datasets/server/MassIVE/MSV000088830/raw/AFN12.mzXML at line 689
Opening and ending tag mismatch: peaks line 66458 and scan, line 66472, column 12 (AFN12.mzXML, line 66472)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153504297-1868632 06D05_rep_C_Cefadroxila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153504297-1868632 06D05_rep_C_Cefadroxila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152612423-1868220 05B10_rep_D_Guanfacine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152612423-1868220 05B10_rep_D_Guanfacine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152826622-1577099 Batch3_A549_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_65.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OW1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD1_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153612841-1577477 Batch4_NCIH1666_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190126215146.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170207_023EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a6/987d3c926a41b8743a2ba0cc836c7f/input_file/SH7_20170207_023EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122550837-1879990 15F10_rep_D_Nalmefene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122550837-1879990 15F10_rep_D_Nalmefene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153055921-1868437 06H04_rep_B_Cefotetanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153055921-1868437 06H04_rep_B_Cefotetanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111619516-1871570 10H09_rep_B_Dienestrolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111619516-1871570 10H09_rep_B_Dienestrolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GG5_01_16865.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/araH_P4H7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (araH_P4H7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151438553-1576423 Batch6_MOLT4_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152440105-1868149 05D07_rep_D_Adenosine_5'-monophosphate_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152440105-1868149 05D07_rep_D_Adenosine_5'-monophosphate_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K4_id_MSn_positive.mzML at line 21
index 391 is out of bounds for axis 0 with size 391
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_57_NOR_49.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_57_NOR_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH15.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_G10_id_positive.mzML at line 21
index 344 is out of bounds for axis 0 with size 344
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113134011-1922295 1_G9_IZH2_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113134011-1922295 1_G9_IZH2_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112438924-1921973 3_H1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112438924-1921973 3_H1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_0123_190123213456.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121539430-1866995 04H10_rep_B_Clofilium_tosylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121539430-1866995 04H10_rep_B_Clofilium_tosylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD5_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112633930-1874173 11D05_rep_A_Novobiocin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112633930-1874173 11D05_rep_A_Novobiocin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potA_P3B6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (potA_P3B6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091038/metadata/miltonsilva/Negative_samples/CM-Fo-I1_Neg.mzML at line 689
Specification mandates value for attribute cvRefUO, line 107505, column 31 (CM-Fo-I1_Neg.mzML, line 107505)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_139.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_139.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_F3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_131_1B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K13_id_MSn_positive.mzML at line 21
index 514 is out of bounds for axis 0 with size 514
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2E02P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_dilute_190201004146.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092634154-1878929 14C07_rep_B_Methantheline_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092634154-1878929 14C07_rep_B_Methantheline_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122136089-1879795 15A04_rep_C_Doxycycline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122136089-1879795 15A04_rep_C_Doxycycline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201159848-1881806 16B05_rep_B_Tegaserod_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201159848-1881806 16B05_rep_B_Tegaserod_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152355375-1576875 Batch1_HX147_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E15_id_MSn_positive.mzML at line 21
index 511 is out of bounds for axis 0 with size 511
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaI_P3A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (paaI_P3A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH41.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_F4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_F4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152027684-1867954 05E04_rep_C_Colchicinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152027684-1867954 05E04_rep_C_Colchicinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GD4_01_11498.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123043413-1867713 05B05_rep_B_Sulfisoxazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123043413-1867713 05B05_rep_B_Sulfisoxazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H12_id.mzML at line 21
index 566 is out of bounds for axis 0 with size 566
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/blank_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100257937-1868907 06G04_rep_D_Metrizamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100257937-1868907 06G04_rep_D_Metrizamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_09_liver_control_skin_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_09_liver_control_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_115_2C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G11P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122509226-1867449 04B05_rep_D_Nortriptyline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122509226-1867449 04B05_rep_D_Nortriptyline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/194-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_133_3A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alaC_P4B5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (alaC_P4B5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A12_id.mzML at line 21
index 525 is out of bounds for axis 0 with size 525
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_79.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D16_id_MSn_negative.mzML at line 21
index 339 is out of bounds for axis 0 with size 339
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_6_2022_1003_Michael_leming_liver_neg-0.0024.mzML at line 689
Premature end of data in tag binary line 26082, line 26082, column 2314544 (1_6_2022_1003_Michael_leming_liver_neg-0.0024.mzML, line 26082)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBmegR13h2b.mzML at line 689
Opening and ending tag mismatch: binary line 89546 and spectrum, line 89595, column 20 (pBmegR13h2b.mzML, line 89595)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5H06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124628430-1876673 09G09_rep_A_Benzethonium_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124628430-1876673 09G09_rep_A_Benzethonium_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130143230-1877335 13F10_rep_B_Tribenosidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130143230-1877335 13F10_rep_B_Tribenosidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_60.mzXML at line 689
Premature end of data in tag peaks line 18484, line 18488, column 3655 (20121114_60.mzXML, line 18488)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_D6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075400.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_G10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D15_id_MSn_negative.mzML at line 21
index 285 is out of bounds for axis 0 with size 285
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152143112-1576770 Batch2_BT20_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M9_id_negative.mzML at line 21
index 245 is out of bounds for axis 0 with size 245
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122855355-1867631 05G07_rep_A_GBR_12909_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122855355-1867631 05G07_rep_A_GBR_12909_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Baicalin_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223150661-1870008 01G02_rep_B_Morantel tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223150661-1870008 01G02_rep_B_Morantel tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112848887-1874280 11G02_rep_A_Gabapentina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112848887-1874280 11G02_rep_A_Gabapentina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD4_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201148823-1877802 09F05_rep_B_Sulfamerazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201148823-1877802 09F05_rep_B_Sulfamerazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30180 - GI-19-234.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-063_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114956641-1875246 12G09_rep_B_Timolol_maleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114956641-1875246 12G09_rep_B_Timolol_maleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121942198-1867186 04C03_rep_C_Triprolidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121942198-1867186 04C03_rep_C_Triprolidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121742330-1879618 15H07_rep_B_Rosiglitazone_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121742330-1879618 15H07_rep_B_Rosiglitazone_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153623683-1577486 Batch4_SKOV3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_MICU_205_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B09P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_04_041_prot_22_IMS_12Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A7_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007661_032118-1Thr6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125232288-1862865 03D09_rep_C_Salbutamolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125232288-1862865 03D09_rep_C_Salbutamolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/193-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_C4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165921208-2227584 PAT50.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ccmD_P3A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (ccmD_P3A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Blank_pesticide_170404051956.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frlA_P3F6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (frlA_P3F6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J8_id_MSn_positive.mzML at line 21
index 406 is out of bounds for axis 0 with size 406
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201514135-1881951 16A03_rep_C_Silodosina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201514135-1881951 16A03_rep_C_Silodosina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/menC_#1_P4G9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (menC_#1_P4G9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093041122-1879118 14H11_rep_C_Nadifloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093041122-1879118 14H11_rep_C_Nadifloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125416130-1876994 12F03_rep_D_S(-)Eticlopride_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125416130-1876994 12F03_rep_D_S(-)Eticlopride_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124510084-1862395 03A01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124510084-1862395 03A01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_C7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223257495-1870058 01E06_rep_B_Naproxenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223257495-1870058 01E06_rep_B_Naproxenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C15_id_MSn_positive.mzML at line 21
index 494 is out of bounds for axis 0 with size 494
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092713781-1878959 14A05_rep_B_Prednicarbateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092713781-1878959 14A05_rep_B_Prednicarbateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_137.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080965/peak/ME3152110.mzML at line 689
attributes construct error, line 167378, column 78 (ME3152110.mzML, line 167378)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-internal std a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201725836-1878049 09B05_rep_C_Benfotiamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201725836-1878049 09B05_rep_C_Benfotiamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121744003-1867093 04A03_rep_C_Flavoxate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121744003-1867093 04A03_rep_C_Flavoxate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_27_male_2022_1017_Michael_neg-0.0051.mzML at line 689
Premature end of data in tag binary line 21137, line 21137, column 2218003 (4_27_male_2022_1017_Michael_neg-0.0051.mzML, line 21137)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1199.mzML at line 689
Invalid character: Char 0x0 out of allowed range
, line 136415, column 1097 (04_05_2012_1199.mzML, line 136415)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GE10_01_11522.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009553_IBD200_E12_A11.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P8_id_MSn_negative.mzML at line 21
index 355 is out of bounds for axis 0 with size 355
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124604005-1876654 09F03_rep_A_Citalopram_Hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124604005-1876654 09F03_rep_A_Citalopram_Hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121953649-1879717 15H06_rep_B_Pravastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121953649-1879717 15H06_rep_B_Pravastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G18_id.mzML at line 21
index 536 is out of bounds for axis 0 with size 536
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_49.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B4_id_MSn_positive.mzML at line 21
index 466 is out of bounds for axis 0 with size 466
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121231036-1879384 14A05_rep_D_Prednicarbatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121231036-1879384 14A05_rep_D_Prednicarbatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151148466-1865144 02G09_rep_D_Canrenoic acid potassium salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151148466-1865144 02G09_rep_D_Canrenoic acid potassium salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152935640-1868378 06E03_rep_A_Clobutinol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152935640-1868378 06E03_rep_A_Clobutinol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_202.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/247.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNX435_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122727945-1867561 05D10_rep_A_Dextromethorphan_hydrobromide_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122727945-1867561 05D10_rep_A_Dextromethorphan_hydrobromide_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD6_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2G003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114142943-1922827 4_C1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114142943-1922827 4_C1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152832448-1577104 Batch3_ACHN_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_A11_id_positive.mzML at line 21
index 358 is out of bounds for axis 0 with size 358
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_blank_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113438887-1922456 2_A8_IZH2_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113438887-1922456 2_A8_IZH2_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P14_id_MSn_negative.mzML at line 21
index 361 is out of bounds for axis 0 with size 361
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170125_019EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c6/60f09430246cff02dd23e99f89a3d8/input_file/SH9_20170125_019EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_C2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152124165-1576755 Batch1_HCC1937_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152111489-1576745 Batch1_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172640397-1889900 Wa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097681/peak/amino acids/030521-b1-RN-5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125554844-1877069 12D02_rep_D_(+)-Isoproterenol_(+)-bitartrate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125554844-1877069 12D02_rep_D_(+)-Isoproterenol_(+)-bitartrate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/004_1018_1_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_84.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine65.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine65.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112949020-1922209 1_D2_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112949020-1922209 1_D2_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ilvC_P3H5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (ilvC_P3H5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123100674-1875932 08B06_rep_A_Tenatoprazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123100674-1875932 08B06_rep_A_Tenatoprazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152519851-1576943 Batch1_NCIH1299_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/btuE_#1_P4E1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (btuE_#1_P4E1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113842799-1922667 3_F3_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113842799-1922667 3_F3_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085485/updates/2020-05-27_viqqikurnianda_8dce80e3/raw/HH-22-2-3-32bit.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000092744/ccms_peak/hem25D_veh_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/001_Nitrate_Day14_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1082.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130558945-1877535 13G10_rep_C_Risperidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130558945-1877535 13G10_rep_C_Risperidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125637079-1877102 12H05_rep_D_Tyloxapolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125637079-1877102 12H05_rep_D_Tyloxapolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122626767-1880018 15B02_rep_D_Acetylcysteinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122626767-1880018 15B02_rep_D_Acetylcysteinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417203344.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Blank_4_B-A1_1_5871.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101614139-1869540 07A02_rep_C_Serotonin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101614139-1869540 07A02_rep_C_Serotonin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113547251-1874568 11C03_rep_C_Clidinium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113547251-1874568 11C03_rep_C_Clidinium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114227329-1874890 11G05_rep_D_Methylhydantoin-5-(D)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114227329-1874890 11G05_rep_D_Methylhydantoin-5-(D)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30104 - GI-14-343.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_0126_190128151736.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG19.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/653.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample1n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J15_id_negative.mzML at line 21
index 257 is out of bounds for axis 0 with size 257
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201418607-1877912 09F04_rep_C_Promazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201418607-1877912 09F04_rep_C_Promazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202010733-1878175 09E08_rep_D_Tramadol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202010733-1878175 09E08_rep_D_Tramadol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084364/ccms_peak/HappyFish_Pos/GUPD19-zeta-T01_F37.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000084364/ccms_peak/HappyFish_Pos/GUPD19-zeta-T01_F37.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170209_017ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/38/1cc770549fc9691eee7de4a5f695e8/input_file/SH9_20170209_017ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ANT2_40EV_RA5_01_22515.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087772/raw/190516_LP_JH_BlankM3_pos.mzML at line 689
Specification mandates value for attribute KDSxL0weDcgaY3mjLOPV0WL2aD6eF9n, line 268984, column 85 (190516_LP_JH_BlankM3_pos.mzML, line 268984)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1H004A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190310136-1889779 Wb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201535846-1881965 16D07_rep_C_Fenoldopama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201535846-1881965 16D07_rep_C_Fenoldopama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gntP_P3G5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (gntP_P3G5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD1_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Microbacterium_BM4M003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample21n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086050/updates/2020-09-01_mschorn_d7c0b04e/peak/GUM007_RNAL-liq_noacid.mzXML at line 689
Premature end of data in tag peaks line 9728, line 9732, column 414817 (GUM007_RNAL-liq_noacid.mzXML, line 9732)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/CPV_P_rep_3_B-E7_1_5679.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiD_P3F10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (thiD_P3F10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150923712-1865031 02F06_rep_D_Methotrexateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150923712-1865031 02F06_rep_D_Methotrexateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N19_id_MSn_negative.mzML at line 21
index 310 is out of bounds for axis 0 with size 310
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125240487-1876921 12A06_rep_D_Dolasetron_mesilatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125240487-1876921 12A06_rep_D_Dolasetron_mesilatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201853829-1882117 16C05_rep_D_Nitazoxanidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201853829-1882117 16C05_rep_D_Nitazoxanidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B14_id_MSn_negative.mzML at line 21
index 266 is out of bounds for axis 0 with size 266
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_34_40x_2022_1006_Michael_pos-0.0060.mzML at line 689
Premature end of data in tag binary line 2319, line 2319, column 1171218 (3_34_40x_2022_1006_Michael_pos-0.0060.mzML, line 2319)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GF2_01_17084.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_E7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_E7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_109.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223936358-2227719 PAT50.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125405158-1862940 03H07_rep_D_Dilazep_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125405158-1862940 03H07_rep_D_Dilazep_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I16_id_MSn_negative.mzML at line 21
index 302 is out of bounds for axis 0 with size 302
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152434750-1576906 Batch2_VMCUB1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153809543-1868781 06D10_rep_C_Carbimazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153809543-1868781 06D10_rep_C_Carbimazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/096_86.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mqo_P4G4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (mqo_P4G4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_66.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/grxB_P3B3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (grxB_P3B3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125823584-1877184 13G10_rep_A_Risperidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125823584-1877184 13G10_rep_A_Risperidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control90_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control90_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153052419-1577217 Batch3_MGHU3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample223_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/deoB_P3F11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (deoB_P3F11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_99.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHA07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086335/ccms_peak/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Arroz - MSConvert/21Apos.mzML at line 689
Opening and ending tag mismatch: binaryDataArray line 47478 and binary, line 47483, column 2504 (21Apos.mzML, line 47483)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123837143-1876298 08H08_rep_C_Levetiracetama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123837143-1876298 08H08_rep_C_Levetiracetama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153016442-1577191 Batch3_PANC0403_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisD_P4E3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (hisD_P4E3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095328/peak/MS_RAW_data/230811_BBT301_control_TPP_HighPH_5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR224h2a.mzML at line 689
attributes construct error, line 273181, column 48 (pBlateR224h2a.mzML, line 273181)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114757986-1875150 12C09_rep_B_Ethynodiol_diacetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114757986-1875150 12C09_rep_B_Ethynodiol_diacetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080389/peak/Peak_List_Files/mLm_CC_Tmem111_E18-5_AT2_Mut_2_P_15Sep16_Arwen_16-08-17.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1030.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153548849-1577457 Batch5_HCT15_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person06_RBC_elder_POS.mzXML at line 689
attributes construct error, line 41, column 95 (Person06_RBC_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/feoB_#4_P3D4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (feoB_#4_P3D4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_CABIN_sample02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_73.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125400317-1862936 03A10_rep_D_Hydralazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125400317-1862936 03A10_rep_D_Hydralazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091627410-1878454 13E09_rep_D_Gabexate_mesilatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091627410-1878454 13E09_rep_D_Gabexate_mesilatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_80.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_3_P_rep_3_B-E6_1_5678.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007525_031618-1Thr1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GD1_01_11666.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113111102-1874385 11G10_rep_B_Phthalylsulfathiazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113111102-1874385 11G10_rep_B_Phthalylsulfathiazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/chiP_P3H5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (chiP_P3H5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNB091_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222741098-1869820 01A06_rep_A_Atracurium besylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222741098-1869820 01A06_rep_A_Atracurium besylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MIXEE_20170127_006ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/42/7149171715d9e8f7b3fcdd1fbf0d7b/input_file/MIXEE_20170127_006ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_49.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121627771-1879561 15H08_rep_A_Rivastigmineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121627771-1879561 15H08_rep_A_Rivastigmineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150815422-1864978 02H07_rep_D_Ivermectina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150815422-1864978 02H07_rep_D_Ivermectina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R331_5h3a.mzML at line 689
Specification mandates value for attribute unitNgT, line 62865, column 139 (pBlichMO17R331_5h3a.mzML, line 62865)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person16_blood_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 101 (Person16_blood_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/blank2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K8_id_MSn_positive.mzML at line 21
index 498 is out of bounds for axis 0 with size 498
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100536876-1869033 06A10_rep_D_Amiodarone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100536876-1869033 06A10_rep_D_Amiodarone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_2_P_rep_3_B-A9_1_5641.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153402667-1868583 06G10_rep_B_Niridazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153402667-1868583 06G10_rep_B_Niridazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_048ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/22/d9ed413156b3f9ef727213f4213d94/input_file/QC_20170209_048ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_153.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GC4_01_11952.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIAJ05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person26_RBC_elder_POS.mzXML at line 689
attributes construct error, line 41, column 81 (Person26_RBC_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/873.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093311/raw/15_RP_F1177_Bcurtipendula.mzML at line 689
Premature end of data in tag binary line 38023, line 38023, column 44684 (15_RP_F1177_Bcurtipendula.mzML, line 38023)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_AW5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/16032021_Batch06_QC_ 7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C24_id_negative.mzML at line 21
index 256 is out of bounds for axis 0 with size 256
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHE01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_C4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123642629-1876207 08G04_rep_C_Pyridoxine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123642629-1876207 08G04_rep_C_Pyridoxine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_56.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223734118-1870270 01C11_rep_C_Antipyrine, 4-hydroxyb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223734118-1870270 01C11_rep_C_Antipyrine, 4-hydroxyb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1146.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1146.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152943130-1868384 06B11_rep_A_Erlotiniba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152943130-1868384 06B11_rep_A_Erlotiniba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/794.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_05_AC+_51.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152412010-1576888 Batch2_VMCUB1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100212417-1868871 06F09_rep_D_Melatonina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100212417-1868871 06F09_rep_D_Melatonina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_131_2C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125341889-1876968 12E08_rep_D_Quinapril_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125341889-1876968 12E08_rep_D_Quinapril_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_08_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_08_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/19072021_Batch07_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223056558-1869967 01A02_rep_A_Azaguanine-8a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223056558-1869967 01A02_rep_A_Azaguanine-8a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A10Pa10mm_black_P1-B-10_01_23074.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121439614-1879480 15G11_rep_A_Fosinoprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121439614-1879480 15G11_rep_A_Fosinoprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/3-methyl-2-oxovaleric_acid_neg.mzXML at line 689
Premature end of data in tag peaks line 11567, line 11571, column 15852 (3-methyl-2-oxovaleric_acid_neg.mzXML, line 11571)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201354340-1877894 09F02_rep_C_Tylosina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201354340-1877894 09F02_rep_C_Tylosina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153534532-1577445 Batch4_SW1573_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_104.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122302768-1879861 15A01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122302768-1879861 15A01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D2_postFOS_2_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200708738-1881591 16D03_rep_A_Pidotimoda.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200708738-1881591 16D03_rep_A_Pidotimoda.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130034913-1877283 13F09_rep_A_Alprostadila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130034913-1877283 13F09_rep_A_Alprostadila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S01_dilute_190131172952.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_376.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/021_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223703128-1870246 01D10_rep_C_Diflunisalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223703128-1870246 01D10_rep_C_Diflunisalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151902980-1576642 Batch7_NCIH1693_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/896.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091725500-1878499 13G06_rep_D_Letrozoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091725500-1878499 13G06_rep_D_Letrozoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1785.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1785.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115035775-1875278 12H06_rep_B_Florfenicola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115035775-1875278 12H06_rep_B_Florfenicola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113249536-1874463 11H09_rep_B_Ioversolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113249536-1874463 11H09_rep_B_Ioversolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G16_id_MSn_negative.mzML at line 21
index 345 is out of bounds for axis 0 with size 345
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153338278-1868564 06B09_rep_B_Biotina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153338278-1868564 06B09_rep_B_Biotina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153017919-1577192 Batch3_647V_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112317008-1873631 10A08_rep_D_Liranaftatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112317008-1873631 10A08_rep_D_Liranaftatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152454744-1868160 05H08_rep_D_Clomiphene_citrate_(Z,E)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152454744-1868160 05H08_rep_D_Clomiphene_citrate_(Z,E)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD3_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNQ149_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C22_id_MSn_negative.mzML at line 21
index 301 is out of bounds for axis 0 with size 301
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Heart_raw files/Lumos_ISAS_heart_QC3.mzML at line 689
Premature end of data in tag spectrumList line 92, line 201337, column 1 (Lumos_ISAS_heart_QC3.mzML, line 201337)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J17_id_negative.mzML at line 21
index 262 is out of bounds for axis 0 with size 262
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control177_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control177_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_plasma_24h_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer2_plasma_24h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122815697-1880103 15E09_rep_D_Clarithromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122815697-1880103 15E09_rep_D_Clarithromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_A11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092627/ccms_peak/Raw_Spectrum_Files/ALZ_CBM_P_E2E3_C_31Jan18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125122511-1876862 12E10_rep_C_Ketorolac_tromethamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125122511-1876862 12E10_rep_C_Ketorolac_tromethamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3F03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114017480-1874785 11G01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114017480-1874785 11G01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102121846-1869792 07A07_rep_D_Colistin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102121846-1869792 07A07_rep_D_Colistin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G15Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151258295-1576339 Batch5_SBC5_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150820493-1864982 02G05_rep_D_Loperamide hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150820493-1864982 02G05_rep_D_Loperamide hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ugpQ_#1_P3C9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (ugpQ_#1_P3C9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223830546-2227662 PAT33.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_blank_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/TAA486_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_157.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ7_1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_134.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223120164-1869985 01A09_rep_A_Amprolium hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223120164-1869985 01A09_rep_A_Amprolium hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/guaC_P4D9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (guaC_P4D9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_E11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153216331-1577284 Batch5_OVCAR5_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123201508-1867775 05G04_rep_B_Nicardipine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123201508-1867775 05G04_rep_B_Nicardipine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111508825-1871516 10E11_rep_B_Isopropamide_iodideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111508825-1871516 10E11_rep_B_Isopropamide_iodideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/30.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_E6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K20_id_MSn_positive.mzML at line 21
index 707 is out of bounds for axis 0 with size 707
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122220753-1879829 15B01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122220753-1879829 15B01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124453848-1876602 09E11_rep_A_Irinotecan_hydrochloride_trihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124453848-1876602 09E11_rep_A_Irinotecan_hydrochloride_trihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007547_031618-1CRP1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150236891-1864717 02C10_rep_B_Dizocilpine maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150236891-1864717 02C10_rep_B_Dizocilpine maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145935472-1864096 02D04_rep_B_Ciprofloxacin hydrochloride monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145935472-1864096 02D04_rep_B_Ciprofloxacin hydrochloride monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/jasmonic_acid.mzXML at line 689
Premature end of data in tag peaks line 4967, line 4971, column 11757 (jasmonic_acid.mzXML, line 4971)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152039919-1576720 Batch1_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102106159-1869779 07A09_rep_D_Dosulepin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102106159-1869779 07A09_rep_D_Dosulepin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/Testmix2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case76_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case76_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/actP_#2_P4C10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (actP_#2_P4C10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/836.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150417164023.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082098/ccms_peak/DC AcOEt pos.mzML at line 689
Premature end of data in tag binary line 288, line 288, column 24062 (DC AcOEt pos.mzML, line 288)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A8_id_MSn_negative.mzML at line 21
index 207 is out of bounds for axis 0 with size 207
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151200081-1576291 Batch5_SHP77_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201216_LKM_700nm_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152458950-1868163 05G11_rep_D_Fusidic_acid_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152458950-1868163 05G11_rep_D_Fusidic_acid_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person19_plasma_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person19_plasma_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ2_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088606/ccms_peak/210116_AR_13_23A_D05_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case42_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case42_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H24_id.mzML at line 21
index 571 is out of bounds for axis 0 with size 571
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_sample04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A6_id.mzML at line 21
index 601 is out of bounds for axis 0 with size 601
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5C08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysA_P5C8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (cysA_P5C8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152941892-1577163 Batch3_NCIH322M_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GF11_01_16974.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114836250-1875181 12C02_rep_B_Hymecromoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114836250-1875181 12C02_rep_B_Hymecromoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_88.mzXML at line 689
Premature end of data in tag peaks line 32849, line 32853, column 7745 (20121114_88.mzXML, line 32853)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152216110-1576796 Batch2_NCIH2170_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlich1001R17_5h3a.mzML at line 689
Specification mandates value for attribute accessindow, line 45817, column 43 (pBlich1001R17_5h3a.mzML, line 45817)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample36n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2C02Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_44_NOR_49.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_44_NOR_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101343329-1869422 07D09_rep_C_Budesonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101343329-1869422 07D09_rep_C_Budesonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tktA_#1_P4E8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (tktA_#1_P4E8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092100922-1878668 14F01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092100922-1878668 14F01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124845156-1862683 03E11_rep_B_Fenbendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124845156-1862683 03E11_rep_B_Fenbendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/eutC_P4H10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (eutC_P4H10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J21_id_MSn_positive.mzML at line 21
index 406 is out of bounds for axis 0 with size 406
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_global_LFD8_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/602.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153111428-1577232 Batch3_SU8686_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085043/ccms_peak/A0_2020-02-20_Seg1T2.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000085043/ccms_peak/A0_2020-02-20_Seg1T2.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/122-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_D9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092744/ccms_peak/hem25D_CoQ6_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100526011-1869024 06B01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100526011-1869024 06B01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122113174-1879778 15B11_rep_B_Diclazurila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122113174-1879778 15B11_rep_B_Diclazurila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_111.mzXML at line 689
Premature end of data in tag peaks line 22615, line 22619, column 11844 (20121114_111.mzXML, line 22619)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114312441-1922907 4_D1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114312441-1922907 4_D1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101413646-1869446 07F10_rep_C_Thiocolchicosideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101413646-1869446 07F10_rep_C_Thiocolchicosideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GB7_01_11471.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/539-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151613440-1576501 Batch7_NCIH441_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153559903-1868676 06F01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153559903-1868676 06F01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2C014.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H4_id.mzML at line 21
index 576 is out of bounds for axis 0 with size 576
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_71.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130555250-1877532 13C01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130555250-1877532 13C01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5D05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00077193.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folK_P4F4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (folK_P4F4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/003_Ammonia_Day4_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130452236-1877482 13F05_rep_B_Sertralineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130452236-1877482 13F05_rep_B_Sertralineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Blank_3_B-A1_1_5633 (2)..mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/NEC2_30EV_RA1_01_22484.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102049042-1869765 07A03_rep_D_Cefotiam_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102049042-1869765 07A03_rep_D_Cefotiam_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180424_ES_H3K_batch6_repA_42.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpD_P4D9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (atpD_P4D9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD3_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-6-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_sp_WTHA10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_C6_id_positive.mzML at line 21
index 335 is out of bounds for axis 0 with size 335
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ7_2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GB6_01_17153.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/005_Soil_10mMIntra_1_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_70.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123056268-1867723 05A04_rep_B_Chlorpropamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123056268-1867723 05A04_rep_B_Chlorpropamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E22_id_MSn_positive.mzML at line 21
index 542 is out of bounds for axis 0 with size 542
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike6_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112229390-1921859 3_A8_GPR1_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112229390-1921859 3_A8_GPR1_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated8hD1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated8hD1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152126734-1576757 Batch1_HCC1937_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113545129-1922513 2_F4_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113545129-1922513 2_F4_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_sample09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_C5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114426195-1874987 12E06_rep_A_Thonzonium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114426195-1874987 12E06_rep_A_Thonzonium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Kaempferol_neg_Cent.mzML at line 689
Specification mandates value for attribute n0127, line 119480, column 63 (Kaempferol_neg_Cent.mzML, line 119480)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_C11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007576_031718-5CRP4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151511677-1576450 Batch6_SR8714_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223522482-1870169 01F02_rep_B_Mupirocina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223522482-1870169 01F02_rep_B_Mupirocina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114709419-1875112 12B09_rep_B_Dioxybenzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114709419-1875112 12B09_rep_B_Dioxybenzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170125_043EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b6/ddbca9f438e0a1a898cfb921e9406e/input_file/SH10_20170125_043EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Caballeronia_LYG015B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/376.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093030596-1879111 14B05_rep_C_Levopropoxyphene_napsylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093030596-1879111 14B05_rep_C_Levopropoxyphene_napsylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-016_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150214817-1864700 02H10_rep_B_Dihydrostreptomycin sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150214817-1864700 02H10_rep_B_Dihydrostreptomycin sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112000564-1921731 2_D11_GAP1_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112000564-1921731 2_D11_GAP1_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150708366-1924542 2_H11_RGT2_100000_nM_estra_3hb.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150708366-1924542 2_H11_RGT2_100000_nM_estra_3hb.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111720635-1921594 1_G3_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111720635-1921594 1_G3_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD1_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_A12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201620445-1881999 16B03_rep_C_Ezetimibea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201620445-1881999 16B03_rep_C_Ezetimibea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD4_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample099.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_plasma_4h_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer1_plasma_4h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_F8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/427.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153309428-1868541 06D06_rep_B_Cyclosporin_Ab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153309428-1868541 06D06_rep_B_Cyclosporin_Ab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A4_id_MSn_positive.mzML at line 21
index 449 is out of bounds for axis 0 with size 449
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F24_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_C8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pitA_P5A5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (pitA_P5A5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096039/peak/Fecal/feces_5xfad_86.mzML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (feces_5xfad_86.mzML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D4_id.mzML at line 21
index 567 is out of bounds for axis 0 with size 567
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152535344-1576956 Batch2_BXPC3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_109.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD3_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD1_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123247415-1867812 05G03_rep_B_Betaxolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123247415-1867812 05G03_rep_B_Betaxolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_131_2C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/001_Nitrate_Day0_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_111811_nanoDESI_Pseudo_Polar_DD_MS2_C52.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_0126_190128121452.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30115 - GI-14-600.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G19_id_MSn_negative.mzML at line 21
index 347 is out of bounds for axis 0 with size 347
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153614018-1577478 Batch5_NCIH1792_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L21_id_MSn_negative.mzML at line 21
index 365 is out of bounds for axis 0 with size 365
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/270.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_blank_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_205.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112141902-1873555 10H10_rep_D_Pridinol_methanesulfonate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112141902-1873555 10H10_rep_D_Pridinol_methanesulfonate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125959828-1863233 04F02_rep_A_Dantrolene_sodium_salt_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125959828-1863233 04F02_rep_A_Dantrolene_sodium_salt_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD5_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_E7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101202427-1869341 07B04_rep_B_Omeprazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101202427-1869341 07B04_rep_B_Omeprazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yiaO_P3G4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (yiaO_P3G4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated8hA1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated8hA1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2F11_160528154422.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_40.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_40.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124700313-1862599 03H02_rep_B_Etodolacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124700313-1862599 03H02_rep_B_Etodolacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125134531-1876871 12H01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125134531-1876871 12H01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/amyA_#1_P4E1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (amyA_#1_P4E1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224147304-1870465 01E10_rep_D_Amyleine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224147304-1870465 01E10_rep_D_Amyleine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153616428-1577480 Batch5_HT29_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090213/ccms_peak/9March2022_023_VH LV Trang 10x_neg 2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Mycobacterium_Mycolicibacterium_sp_MA3001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/6.1_4OI _VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101857582-1869674 07C02_rep_D_Vigabatrin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101857582-1869674 07C02_rep_D_Vigabatrin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/ka viqqi/converted coba2/200609_sample_36.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123224879-1867794 05A07_rep_B_Methyldopa_(L,-)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123224879-1867794 05A07_rep_B_Methyldopa_(L,-)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170207_032EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/4f/3526ab3202ada9b83c151e8b7c55f4/input_file/MMW3_20170207_032EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_G4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152752317-1577070 Batch2_PC3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112749334-1874233 11C05_rep_A_Benzthiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112749334-1874233 11C05_rep_A_Benzthiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_225.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_147.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151225952-1924816 3_B3_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151225952-1924816 3_B3_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_F8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_B3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_62.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw_Baseline_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4C1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4C1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095819/raw/202312_206_PL_10uM_1uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GC8_01_17045.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224152491-1870469 01D08_rep_D_Pyrimethaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224152491-1870469 01D08_rep_D_Pyrimethaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152004357-1867935 05H06_rep_C_Amikacin_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152004357-1867935 05H06_rep_C_Amikacin_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114031199-1874796 11C08_rep_D_Propantheline_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114031199-1874796 11C08_rep_D_Propantheline_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170127_041ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/8b/63f6ad7d968e4b54eb9d062af68440/input_file/SH7_20170127_041ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5F07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111812891-1921639 2_B10_GAP1_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111812891-1921639 2_B10_GAP1_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088606/ccms_peak/210116_AR_05_AGE017_H11_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091942482-1878608 13A02_rep_D_Denatonium_benzoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091942482-1878608 13A02_rep_D_Denatonium_benzoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180501_ES_H3K_batch4_repC_61.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_094b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_11_leg_skin_RESV_skin_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_11_leg_skin_RESV_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101725378-1869599 07E05_rep_C_Tiabendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101725378-1869599 07E05_rep_C_Tiabendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pnuC_P4E9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (pnuC_P4E9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1F04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S72.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S72.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD1_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GG8_01_17104.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1362.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1362.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GC3_01_16806.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122256121-1879856 15D10_rep_C_Anthralina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122256121-1879856 15D10_rep_C_Anthralina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B7_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/TAA204_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121419774-1879465 15E10_rep_A_Tripelennamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121419774-1879465 15E10_rep_A_Tripelennamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/brnQ_P3A8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (brnQ_P3A8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101952903-1869719 07C09_rep_D_Acenocoumarola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101952903-1869719 07C09_rep_D_Acenocoumarola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122840185-1867619 05B11_rep_A_Domperidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122840185-1867619 05B11_rep_A_Domperidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153252652-1868528 06E11_rep_B_Dicloxacillin_sodium_salt_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153252652-1868528 06E11_rep_B_Dicloxacillin_sodium_salt_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114907472-1875206 12H01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114907472-1875206 12H01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/953-B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112400602-1874051 10D05_rep_D_Fenoprofen_calcium_salt_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112400602-1874051 10D05_rep_D_Fenoprofen_calcium_salt_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201537664-1877968 09C11_rep_C_Irsogladine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201537664-1877968 09C11_rep_C_Irsogladine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F8_id_MSn_negative.mzML at line 21
index 368 is out of bounds for axis 0 with size 368
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153335131-1577348 Batch4_NCIH1666_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-045.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-045.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114239927-1922878 4_H4_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114239927-1922878 4_H4_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_H3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C5_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_78.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/006_Ammonia_Day17_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113618541-1922542 2_G9_IZH2_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113618541-1922542 2_G9_IZH2_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1H03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/esculin_hydrate.mzXML at line 689
Premature end of data in tag peaks line 5447, line 5451, column 56812 (esculin_hydrate.mzXML, line 5451)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A11_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_G2_01_12175.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152229872-1576807 Batch2_T47D_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_A8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092037173-1878650 14D08_rep_A_Formestanea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092037173-1878650 14D08_rep_A_Formestanea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102004014-1869728 07A11_rep_D_Iobenguane_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102004014-1869728 07A11_rep_D_Iobenguane_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201046157-1881751 16F03_rep_B_Indinavir_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201046157-1881751 16F03_rep_B_Indinavir_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_103.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114046039-1874808 11C01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114046039-1874808 11C01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_218.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112722142-1874211 11D04_rep_A_Ifosfamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112722142-1874211 11D04_rep_A_Ifosfamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHD04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G2_id.mzML at line 21
index 533 is out of bounds for axis 0 with size 533
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNH099_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/23_D24062013T2237_1399CBU_0020_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201426902-1877918 09C01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201426902-1877918 09C01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101932236-1869702 07D09_rep_D_Budesonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101932236-1869702 07D09_rep_D_Budesonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223536881-1870180 01F11_rep_B_Tolazoline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223536881-1870180 01F11_rep_B_Tolazoline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1131.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1131.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201523062-1877957 09D06_rep_C_Oxacillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201523062-1877957 09D06_rep_C_Oxacillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101807529-1869634 07C11_rep_D_Cyclizine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101807529-1869634 07C11_rep_D_Cyclizine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122041482-1867233 04C06_rep_C_Dimenhydrinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122041482-1867233 04C06_rep_C_Dimenhydrinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122848876-1867626 05G05_rep_A_Probucola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122848876-1867626 05G05_rep_A_Probucola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1061.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_120_2B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_74.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_74.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121536136-1879521 15H01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121536136-1879521 15H01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/epd_#3_P4F3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (epd_#3_P4F3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GE6_01_17197.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_B9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-1-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/patD_P3D9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (patD_P3D9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114256861-1874914 12F01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114256861-1874914 12F01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemB_P4C6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (hemB_P4C6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222754029-1869830 01B04_rep_A_Hydroflumethiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222754029-1869830 01B04_rep_A_Hydroflumethiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_69.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1058.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N17.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125658284-1877118 13F10_rep_A_Tribenosideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125658284-1877118 13F10_rep_A_Tribenosideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ccmA_P3C2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (ccmA_P3C2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control118_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control118_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112508198-1874105 10E06_rep_D_Ethoxyquinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112508198-1874105 10E06_rep_D_Ethoxyquinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12C13_Replicate2_Level1_MSMS_neg.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/agp_P4D2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (agp_P4D2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223914881-2227700 PAT43.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152519280-1868179 05C04_rep_D_Desipramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152519280-1868179 05C04_rep_D_Desipramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_19032901_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121821586-1879648 15B09_rep_B_Methenaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121821586-1879648 15B09_rep_B_Methenaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD1_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111750389-1921620 1_D3_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111750389-1921620 1_D3_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dcd_P3B8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (dcd_P3B8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122459199-1879950 15D01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122459199-1879950 15D01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122341350-1867378 04A04_rep_D_Bufexamaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122341350-1867378 04A04_rep_D_Bufexamaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121817363-1879645 15E06_rep_B_Fluocinolone_acetonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121817363-1879645 15E06_rep_B_Fluocinolone_acetonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8A08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122740512-1875775 08D03_rep_A_Etofenamateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122740512-1875775 08D03_rep_A_Etofenamateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122512935-1867452 04H03_rep_D_Flunarizine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122512935-1867452 04H03_rep_D_Flunarizine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_100.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121548096-1879530 15C08_rep_A_Fludarabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121548096-1879530 15C08_rep_A_Fludarabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD6_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case50_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case50_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091809681-1878534 13E08_rep_D_Fursultiamine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091809681-1878534 13E08_rep_D_Fursultiamine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092220793-1878731 14A01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092220793-1878731 14A01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172727917-1889935 blankb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101927281-1869698 07H11_rep_D_Prenylamine_lactateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101927281-1869698 07H11_rep_D_Prenylamine_lactateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/68-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/leuB_#5_P4D5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (leuB_#5_P4D5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K17_id_MSn_positive.mzML at line 21
index 525 is out of bounds for axis 0 with size 525
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125516289-1877040 12G09_rep_D_Timolol_maleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125516289-1877040 12G09_rep_D_Timolol_maleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD6_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_C2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lysU_P3B2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (lysU_P3B2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ssuC_P3C4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (ssuC_P3C4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC04.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113717830-1922593 3_C9_STE2_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113717830-1922593 3_C9_STE2_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1209.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1209.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F8_id_negative.mzML at line 21
index 263 is out of bounds for axis 0 with size 263
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151208422-1576298 Batch5_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHL06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151406532-1576396 Batch6_HCC1937_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075337.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_F9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/256.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD1_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Sphingomonas_MSA21.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/preT_P3C1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (preT_P3C1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gntK_#2_P3C2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (gntK_#2_P3C2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125144441-1862826 03H07_rep_C_Dilazep_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125144441-1862826 03H07_rep_C_Dilazep_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_85.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_28_40x_2022_1006_Michael_pos-0.0052.mzML at line 689
Premature end of data in tag binary line 3611, line 3611, column 854790 (3_28_40x_2022_1006_Michael_pos-0.0052.mzML, line 3611)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114215336-1922856 4_F3_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114215336-1922856 4_F3_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123239792-1867806 05C08_rep_B_Thioguanosinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123239792-1867806 05C08_rep_B_Thioguanosinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C6_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A11_id_MSn_positive.mzML at line 21
index 409 is out of bounds for axis 0 with size 409
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/-ve_MS_M.mzXML at line 689
Premature end of data in tag peaks line 23726, line 23729, column 221663 (-ve_MS_M.mzXML, line 23729)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_E9_id_negative.mzML at line 21
index 190 is out of bounds for axis 0 with size 190
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/364.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpQ_P4H7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (glpQ_P4H7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_dilute_190201013136.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092751338-1878988 14B02_rep_B_Moricizine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092751338-1878988 14B02_rep_B_Moricizine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207133007067-1733936 1pool Skin 2 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_A4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_C6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD4_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GA1_01_17009.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151143111-1576277 Batch5_PC14PE6_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD6_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150103144-1864164 02G10_rep_B_Thioproperazine dimesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150103144-1864164 02G10_rep_B_Thioproperazine dimesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgk_P3D7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (pgk_P3D7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_62_RIN_49.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_62_RIN_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201759092-1882074 16H04_rep_C_Raltitrexedb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201759092-1882074 16H04_rep_C_Raltitrexedb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_91.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aqpZ_P3C12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (aqpZ_P3C12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153747670-1577556 Batch6_HCC1806_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100844029-1869183 07B02_rep_A_Metixene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100844029-1869183 07B02_rep_A_Metixene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/289.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201854531-1878116 09H06_rep_D_Sulfachloropyridazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201854531-1878116 09H06_rep_D_Sulfachloropyridazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/2.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_3152_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/004_Nitrate_Day11_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201915423-1882134 16G09_rep_D_Palonosetron_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201915423-1882134 16G09_rep_D_Palonosetron_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/blank_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/58-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_138.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdsD_P3G1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (kdsD_P3G1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_18111330_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1G09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150129929-1864185 02E05_rep_B_Tioconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150129929-1864185 02E05_rep_B_Tioconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114025087-1922758 3_G4_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114025087-1922758 3_G4_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125008747-1876808 12D11_rep_C_L(-)-vesamicol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125008747-1876808 12D11_rep_C_L(-)-vesamicol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_blank2.mzXML at line 689
Premature end of data in tag peaks line 13990, line 13994, column 28136 (L_blank2.mzXML, line 13994)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/294.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_68.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152926639-1868371 06H06_rep_A_Brompheniramine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152926639-1868371 06H06_rep_A_Brompheniramine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM4V003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/2dda7p_aroB_P4H7_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (2dda7p_aroB_P4H7_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-qc_high (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J19_id.mzML at line 21
index 543 is out of bounds for axis 0 with size 543
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224052186-1870422 01F09_rep_D_Oxethazaineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224052186-1870422 01F09_rep_D_Oxethazaineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_A12_id_negative.mzML at line 21
index 217 is out of bounds for axis 0 with size 217
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_23_RIN_52.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_23_RIN_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_C9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case67_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case67_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151926736-1576662 Batch7_NCIH2444_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S25_0126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yagE_P3H9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (yagE_P3H9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/247.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121152614-1879355 14D04_rep_D_Bethanechol_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121152614-1879355 14D04_rep_D_Bethanechol_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample224_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/414.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130208790-1877355 13B08_rep_B_Zardaverinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130208790-1877355 13B08_rep_B_Zardaverinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_4_P_ref_2_B-D8_1_5670.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_19040322_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000092744/ccms_peak/hem25D_CoQ6_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092327078-1878783 14D03_rep_A_Lansoprazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092327078-1878783 14D03_rep_A_Lansoprazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123216347-1867787 05E08_rep_B_Benfluorexb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123216347-1867787 05E08_rep_B_Benfluorexb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113705822-1874631 11C08_rep_C_Propantheline_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113705822-1874631 11C08_rep_C_Propantheline_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_0123_190123224123.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092817293-1879008 14C02_rep_B_Phensuximidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092817293-1879008 14C02_rep_B_Phensuximidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121343486-1866907 04A06_rep_B_Dropropizine_(R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121343486-1866907 04A06_rep_B_Dropropizine_(R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153837288-1577598 Batch7_NCIH441_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H16_id_MSn_negative.mzML at line 21
index 336 is out of bounds for axis 0 with size 336
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frlB_P3A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (frlB_P3A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125759655-1863132 04B09_rep_A_Antazoline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125759655-1863132 04B09_rep_A_Antazoline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD4_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2A09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8C16.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111925648-1872582 10E04_rep_C_Meclofenoxate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111925648-1872582 10E04_rep_C_Meclofenoxate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E4_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample138_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122621147-1867507 05A10_rep_A_Tacrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122621147-1867507 05A10_rep_A_Tacrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_C3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150557381-1924481 1_B1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150557381-1924481 1_B1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_QC10.mzXML at line 689
Premature end of data in tag peaks line 22132, line 22136, column 3561 (L_QC10.mzXML, line 22136)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153429361-1577392 Batch4_NCIH1869_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152450687-1868157 05A10_rep_D_Tacrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152450687-1868157 05A10_rep_D_Tacrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153847958-1577607 Batch6_OVCAR8_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/putP_#2_P5D10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (putP_#2_P5D10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000081911/ccms_peak/160113_CFC_0_org.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111708786-1871608 10F05_rep_B_Fluocinonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111708786-1871608 10F05_rep_B_Fluocinonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K24_id_negative.mzML at line 21
index 255 is out of bounds for axis 0 with size 255
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152302696-1576833 Batch2_NCIH2122_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_139.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD2_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122439610-1867425 04H06_rep_D_Minocycline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122439610-1867425 04H06_rep_D_Minocycline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121221771-1879377 14H04_rep_D_Viomycin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121221771-1879377 14H04_rep_D_Viomycin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_YP_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130025686-1863253 04C11_rep_A_Fendiline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130025686-1863253 04C11_rep_A_Fendiline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075260.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093056884-1879130 14C06_rep_C_Milrinonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093056884-1879130 14C06_rep_C_Milrinonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202332249-1878334 10F06_rep_A_Sulfamethazine_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202332249-1878334 10F06_rep_A_Sulfamethazine_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D9_id_MSn_positive.mzML at line 21
index 741 is out of bounds for axis 0 with size 741
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150958658-1865058 02D09_rep_D_Nalbuphine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150958658-1865058 02D09_rep_D_Nalbuphine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgsA_P4G11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (pgsA_P4G11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113122735-1922285 1_F9_IZH2_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113122735-1922285 1_F9_IZH2_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C18_id_MSn_negative.mzML at line 21
index 292 is out of bounds for axis 0 with size 292
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/880.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075184.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123829782-1876292 08F01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123829782-1876292 08F01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101454895-1869479 07E09_rep_C_Triflusala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101454895-1869479 07E09_rep_C_Triflusala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3T3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3T3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OAW1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hB2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hB2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlB3b.mzXML at line 689
expected '>', line 718, column 11 (ExtraControlB3b.mzXML, line 718)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/pi_yejA_P6E9_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024914 (pi_yejA_P6E9_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151335084-1576370 Batch6_CORL279_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yiaY_P4H5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (yiaY_P4H5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124910251-1876764 12G03_rep_C_Bretylium_tosylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124910251-1876764 12G03_rep_C_Bretylium_tosylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/380.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165743591-2227494 PAT35.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151149699-1865145 02G09_rep_D_Canrenoic acid potassium saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151149699-1865145 02G09_rep_D_Canrenoic acid potassium saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B6_id_MSn_positive.mzML at line 21
index 475 is out of bounds for axis 0 with size 475
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_C7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202129882-1878237 09H04_rep_D_Dipyroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202129882-1878237 09H04_rep_D_Dipyroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIAJ12.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124242029-1862278 03D06_rep_A_Asenapine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124242029-1862278 03D06_rep_A_Asenapine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152659531-1577026 Batch1_NCIH1395_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C10_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_68.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091757008-1878524 13C01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091757008-1878524 13C01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate17/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125432145-1862962 03A02_rep_D_Isoniazida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125432145-1862962 03A02_rep_D_Isoniazida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152328466-1868095 05C09_rep_D_Chlorprothixene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152328466-1868095 05C09_rep_D_Chlorprothixene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153450240-1577409 Batch4_PANC0813_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201707227-1878035 09B01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201707227-1878035 09B01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1876.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1876.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_H7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/006_Ammonia_Day17_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_B3_01_12198.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150517101-1864840 02H02_rep_C_Erythromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150517101-1864840 02H02_rep_C_Erythromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tynA_P3A2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (tynA_P3A2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_E10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151621799-1576508 Batch7_SKMES1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125708693-1863089 03D01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125708693-1863089 03D01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223332646-1870085 01C08_rep_B_Doxylamine succinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223332646-1870085 01C08_rep_B_Doxylamine succinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GC8_01_17169.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/279.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB3A10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121425723-1866938 04G03_rep_B_Lincomycin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121425723-1866938 04G03_rep_B_Lincomycin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_G5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125602098-1863035 03D04_rep_D_Oxolinic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125602098-1863035 03D04_rep_D_Oxolinic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113859239-1874722 11H03_rep_D_Iopromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113859239-1874722 11H03_rep_D_Iopromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151841468-1576624 Batch7_NCIH209_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/002_Urea_Day0_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/011_20uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_C8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111415537-1871475 10C10_rep_B_Isoetharine_mesylate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111415537-1871475 10C10_rep_B_Isoetharine_mesylate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122154638-1879809 15F08_rep_C_Vecuronium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122154638-1879809 15F08_rep_C_Vecuronium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112016928-1921745 2_E11_GAP1_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112016928-1921745 2_E11_GAP1_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223739363-1870274 01E10_rep_C_Amyleine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223739363-1870274 01E10_rep_C_Amyleine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124444008-1862375 03G06_rep_A_Nifenazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124444008-1862375 03G06_rep_A_Nifenazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yigL_P3B3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (yigL_P3B3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_131_3B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145630849-1863947 02D04_rep_A_Ciprofloxacin hydrochloride monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145630849-1863947 02D04_rep_A_Ciprofloxacin hydrochloride monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153522091-1868646 06E03_rep_C_Clobutinol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153522091-1868646 06E03_rep_C_Clobutinol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112406879-1874056 10C03_rep_D_Sulfamethizolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112406879-1874056 10C03_rep_D_Sulfamethizolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_A4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152031238-1867957 05D01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152031238-1867957 05D01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30231 - GI-17-306.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153223913-1577290 Batch5_EBC1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d1_284_lipid__Neg_17Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 35546, column 1 (SysVirol_IFL001_Cal04RG_d1_284_lipid__Neg_17Sep13_13-07-01.mzXML, line 35546)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_B8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_QC_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_QC_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_H9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_MSMS_2022_1003_Michael_leming_liver_neg-0013.mzML at line 689
Premature end of data in tag binary line 16843, line 16843, column 319649 (pooled_MSMS_2022_1003_Michael_leming_liver_neg-0013.mzML, line 16843)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yijE_P5G9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (yijE_P5G9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O10_id_MSn_positive.mzML at line 21
index 683 is out of bounds for axis 0 with size 683
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/151-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125223372-1876908 12B03_rep_C_Flubendazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125223372-1876908 12B03_rep_C_Flubendazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202530366-1878427 10F09_rep_A_Proadifen_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202530366-1878427 10F09_rep_A_Proadifen_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw2_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170125_051EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b1/dca2cc3d7bacab7019ef7f3d2dfeed/input_file/MMW3_20170125_051EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222951665-1869919 01C01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222951665-1869919 01C01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_186.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201218_LKM_no_ACN_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_156.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3B03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170209_045ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/1c/4ae5fd1ced66d37de9f08bcdf83be2/input_file/MMW6_20170209_045ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/468-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ppx_P4C5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024989 (ppx_P4C5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mdtM_#2_P6E8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (mdtM_#2_P6E8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-117_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_08P_A8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223426754-1870126 01D10_rep_B_Diflunisalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223426754-1870126 01D10_rep_B_Diflunisalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111830992-1921655 2_H8_GAP1_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111830992-1921655 2_H8_GAP1_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_F7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_F7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113523953-1922495 2_F3_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113523953-1922495 2_F3_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Blank_pesticide_Swabs_170403084218.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151657786-1925043 4_E2_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151657786-1925043 4_E2_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113218603-1874438 11C08_rep_B_Propantheline_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113218603-1874438 11C08_rep_B_Propantheline_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/livH_#1_P4D11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (livH_#1_P4D11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNX435_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152755929-1577073 Batch1_769P_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122614897-1867502 05D05_rep_A_Clopamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122614897-1867502 05D05_rep_A_Clopamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1091.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122225930-1879833 15F10_rep_C_Nalmefene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122225930-1879833 15F10_rep_C_Nalmefene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224050889-1870421 01F09_rep_D_Oxethazainea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224050889-1870421 01F09_rep_D_Oxethazainea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223757648-1870288 01H07_rep_C_Dibucaineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223757648-1870288 01H07_rep_C_Dibucaineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113046889-1922254 1_G11_IZH2_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113046889-1922254 1_G11_IZH2_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Hymenobacter_LYG005A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1040.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pyrF_#1_P5E1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (pyrF_#1_P5E1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_18111330_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/605.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hA3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hA3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091640846-1878464 13D02_rep_D_Gliquidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091640846-1878464 13D02_rep_D_Gliquidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GC9_01_11489.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130852158-1877673 13A01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130852158-1877673 13A01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/001_Soil_WaterExtra_1_Col1_JX_12172015_151217200829.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2A06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD2_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223934372-1870363 01H09_rep_C_Thioridazine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223934372-1870363 01H09_rep_C_Thioridazine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145824400-1864039 02H09_rep_A_Neomycin sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145824400-1864039 02H09_rep_A_Neomycin sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_blank_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_101b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223848722-2227678 PAT38.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_H5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ2_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/938.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_18091336_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153611098-1868685 06D02_rep_C_Pefloxacineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153611098-1868685 06D02_rep_C_Pefloxacineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4E13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121414441-1879461 15F04_rep_A_Azithromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121414441-1879461 15F04_rep_A_Azithromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114123426-1874838 11F08_rep_D_(+)_-Levobunolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114123426-1874838 11F08_rep_D_(+)_-Levobunolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/agp_P4D2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (agp_P4D2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130651393-1877576 13E06_rep_C_Apramycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130651393-1877576 13E06_rep_C_Apramycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person14_blood_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 101 (Person14_blood_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124837577-1862677 03A06_rep_B_Ethosuximideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124837577-1862677 03A06_rep_B_Ethosuximideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092011046-1878630 13A04_rep_D_Enilconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092011046-1878630 13A04_rep_D_Enilconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113142109-1922302 1_G10_IZH2_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113142109-1922302 1_G10_IZH2_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153455091-1577413 Batch4_NCIH810_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190119_ES_H3K_batch14_repC_203.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123519138-1876141 08E06_rep_B_Carbadoxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123519138-1876141 08E06_rep_B_Carbadoxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B15_id_MSn_negative.mzML at line 21
index 266 is out of bounds for axis 0 with size 266
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2T5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/2T5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113751487-1922622 3_B1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113751487-1922622 3_B1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ3_5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C4_id_negative.mzML at line 21
index 276 is out of bounds for axis 0 with size 276
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K17_id_MSn_negative.mzML at line 21
index 312 is out of bounds for axis 0 with size 312
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GF2_01_16965.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152132953-1576762 Batch2_MDAMB468_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_73.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD4_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123812217-1876278 08C02_rep_C_Reboxetine_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123812217-1876278 08C02_rep_C_Reboxetine_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/37-4_Ms_25min__GE6_01_4264.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD5_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD5_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_4_P_rep_3_B-B4_1_5518.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007538_031618-1Thr6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_095a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/379.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S25_0124_190125064736.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165810957-2227519 PAT33.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J8_id_MSn_negative.mzML at line 21
index 342 is out of bounds for axis 0 with size 342
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-PDAC29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130216519-1877361 13H01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130216519-1877361 13H01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152238432-1868057 05F04_rep_D_Amethopterin_(R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152238432-1868057 05F04_rep_D_Amethopterin_(R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111942942-1921716 2_H4_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111942942-1921716 2_H4_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample050.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130443285-1877475 13B07_rep_B_Tracazolate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130443285-1877475 13B07_rep_B_Tracazolate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-qc_high.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30125 - GI-16-079.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/speF_P3F4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (speF_P3F4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD6_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHA08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/303.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152339054-1868103 05A07_rep_D_Methyldopa_(L,-)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152339054-1868103 05A07_rep_D_Methyldopa_(L,-)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1336.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1336.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD6_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/asnL_ansA_P3F12_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 634, column 10020047 (asnL_ansA_P3F12_Aquity_pos.mzXML, line 634)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD1_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113747456-1874664 11F09_rep_C_Doxazosin_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113747456-1874664 11F09_rep_C_Doxazosin_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR23h1a.mzML at line 689
Opening and ending tag mismatch: binary line 127112 and scanList, line 127123, column 22 (pBlateR23h1a.mzML, line 127123)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_SERUM_V5_SSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike4_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007525_031618-1Thr1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170127_045ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/19/6cb53867f29a34d701aa286a89b27d/input_file/SH8_20170127_045ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092644675-1878937 14G04_rep_B_4-aminosalicylic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092644675-1878937 14G04_rep_B_4-aminosalicylic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152907700-1577134 Batch5_NCIH3255_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_E1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES342.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_08_blood_control_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_08_blood_control_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081010.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_G10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152706612-1577032 Batch2_NCIH292_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114359772-1922949 4_C10_STE2_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114359772-1922949 4_C10_STE2_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xapB_P4F7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (xapB_P4F7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124314142-1876520 08D11_rep_D_Zopiclonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124314142-1876520 08D11_rep_D_Zopiclonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091933496-1878601 13G03_rep_D_Nifekalantb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091933496-1878601 13G03_rep_D_Nifekalantb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092153/peak/Sample0002.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ5_3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/edd_#1_P3B1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (edd_#1_P3B1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125508534-1877034 12B07_rep_D_N-Acetyl-L-leucineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125508534-1877034 12B07_rep_D_N-Acetyl-L-leucineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_39_AC+40.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223623684-1870216 01B07_rep_C_Sulfathiazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223623684-1870216 01B07_rep_C_Sulfathiazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fes_P5C3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (fes_P5C3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxT_P5E7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (lpxT_P5E7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122014206-1879733 15D05_rep_B_Ambrisentanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122014206-1879733 15D05_rep_B_Ambrisentanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d8_288_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 57520, column 1 (SysVirol_IFT001_Cal04RG_d8_288_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 57520)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125040741-1876832 12H07_rep_C_Megestrol_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125040741-1876832 12H07_rep_C_Megestrol_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7A05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/carB_P5H6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (carB_P5H6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130232310-1877373 13F01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130232310-1877373 13F01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153133646-1577250 Batch4_NCIH2126_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cynT_#1_P6C12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (cynT_#1_P6C12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_G5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D21_id_negative.mzML at line 21
index 247 is out of bounds for axis 0 with size 247
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111952345-1872603 10G02_rep_C_Clobetasol_propionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111952345-1872603 10G02_rep_C_Clobetasol_propionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101129905-1869315 07B09_rep_B_Artemisinina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101129905-1869315 07B09_rep_B_Artemisinina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/032_CRa_H9M5_M470_Blank_08_high_pos.mzXML at line 689
Premature end of data in tag peaks line 19096, line 19100, column 19957 (032_CRa_H9M5_M470_Blank_08_high_pos.mzXML, line 19100)
Error processing file: /data/datasets/server/MassIVE/MSV000080949/ccms_peak/peaks/3samples_sampl3_POS.mzXML at line 689
attributes construct error, line 41, column 77 (3samples_sampl3_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case100_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case100_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_104.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_104.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiQ_P5F10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (thiQ_P5F10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152155923-1868025 05E09_rep_C_Bepridil_hydrochloride_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152155923-1868025 05E09_rep_C_Bepridil_hydrochloride_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_94.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_94.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152126734-1576757 Batch1_HCC1937_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nanK_P3B5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (nanK_P3B5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rutF_P4A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (rutF_P4A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122307789-1879865 15B09_rep_C_Methenamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122307789-1879865 15B09_rep_C_Methenamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mak_P3E3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (mak_P3E3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/212-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/002_Urea_Day4_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/011_20uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O16_id.mzML at line 21
index 577 is out of bounds for axis 0 with size 577
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_D15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152120657-1867997 05B11_rep_C_Domperidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152120657-1867997 05B11_rep_C_Domperidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_20_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_20_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125500946-1877028 12F06_rep_D_(-)-MK_801_hydrogen_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125500946-1877028 12F06_rep_D_(-)-MK_801_hydrogen_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G6_id_MSn_positive.mzML at line 21
index 669 is out of bounds for axis 0 with size 669
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc017_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc017_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112609040-1922051 4_A5_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112609040-1922051 4_A5_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_A5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125330713-1862912 03C08_rep_C_Catharanthinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125330713-1862912 03C08_rep_C_Catharanthinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/150-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/93.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122822119-1867605 05B05_rep_A_Sulfisoxazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122822119-1867605 05B05_rep_A_Sulfisoxazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170125_043EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/9d/663b1f4e0bb905c58c2ad53429fab1/input_file/SH10_20170125_043EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153812574-1577577 Batch6_SF539_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101601453-1869530 07B05_rep_C_Propylthiouracilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101601453-1869530 07B05_rep_C_Propylthiouracilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Pos/P2.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/20221212_carryover_test_noISTD_PLASMA_sample07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudI_P3D7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (nudI_P3D7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201640762-1882014 16A01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201640762-1882014 16A01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_H2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114833893-1875179 12F09_rep_B_Benserazide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114833893-1875179 12F09_rep_B_Benserazide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_G9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080389/peak/Peak_List_Files/mLm_CC_Tmem111_E18-5_AT2_Mut_1_P_15Sep16_Arwen_16-08-17.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_76.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170125_068EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e6/4c2f423a88622fbe7d887ae763e73f/input_file/SH7_20170125_068EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152036235-1867961 05C07_rep_C_Maprotiline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152036235-1867961 05C07_rep_C_Maprotiline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170125_044EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a9/ee87d065e3700d55fea90f38b758fe/input_file/MMW6_20170125_044EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_72.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124950555-1876794 12G04_rep_C_Pralidoxime_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124950555-1876794 12G04_rep_C_Pralidoxime_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gcvP_P3B6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (gcvP_P3B6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_16061440_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD2_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hD3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hD3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123010514-1867690 05F03_rep_B_Debrisoquin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123010514-1867690 05F03_rep_B_Debrisoquin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223918645-1870351 01B11_rep_C_Minoxidila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223918645-1870351 01B11_rep_C_Minoxidila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudL_#2_P4B1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (nudL_#2_P4B1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cynT_#1_P6C12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (cynT_#1_P6C12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ribB_P3F10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (ribB_P3F10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_100.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A3_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_E3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Catechin_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yieH_#3_P4H2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (yieH_#3_P4H2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD4_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122828444-1880113 15G06_rep_D_Racepinephrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122828444-1880113 15G06_rep_D_Racepinephrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D6_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/curA_P3E1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (curA_P3E1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E1_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102038157-1869756 07E07_rep_D_Ethionamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102038157-1869756 07E07_rep_D_Ethionamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112301387-1921887 3_B2_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112301387-1921887 3_B2_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike6_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121540737-1866996 04C03_rep_B_Triprolidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121540737-1866996 04C03_rep_B_Triprolidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H8_id_MSn_positive.mzML at line 21
index 685 is out of bounds for axis 0 with size 685
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201215_LKM_NoBeads_MeOH_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_plasma_4h_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer2_plasma_4h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/59-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GA3_01_17136.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_high (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_156.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_C5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIAJ07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/lipidX_lpxH_P3A5_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (lipidX_lpxH_P3A5_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223741344-2227619 PAT38.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narK_P4F4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (narK_P4F4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_H5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case213_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case213_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114407924-1874972 12H06_rep_A_Florfenicola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114407924-1874972 12H06_rep_A_Florfenicola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_28_RIN_54.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_28_RIN_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1139.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBsubR23h3a.mzML at line 617
'intensity array'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091857798-1878573 13A08_rep_D_Gestrinoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091857798-1878573 13A08_rep_D_Gestrinoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201012506-1877732 09D04_rep_B_Opipramol_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201012506-1877732 09D04_rep_B_Opipramol_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ3_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150435022-1864807 02A09_rep_C_Amidopyrineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150435022-1864807 02A09_rep_C_Amidopyrineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180411_ES_H3K_batch7_repA_75.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153110187-1577231 Batch3_NCIH661_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113204001-1922321 1_C3_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113204001-1922321 1_C3_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control37_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control37_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170125_028EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/4c/3949092af42fcf3a82d07034c7b5cc/input_file/SH10_20170125_028EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085122/peak/16.mzXML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/666.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control112_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control112_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaB_P3A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (paaB_P3A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/483-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C5_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121418526-1866933 04C05_rep_B_Dyclonine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121418526-1866933 04C05_rep_B_Dyclonine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_19040307_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GF11_01_11713.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample102_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/432.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-cc3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNT302_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153227106-1868508 06G07_rep_B_Efavirenza.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153227106-1868508 06G07_rep_B_Efavirenza.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike1_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_12_Blood_Ma_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 87 (Mouse_12_Blood_Ma_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093200400-1879181 14F03_rep_C_Ranolazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093200400-1879181 14F03_rep_C_Ranolazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113022039-1922235 1_E10_IZH2_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113022039-1922235 1_E10_IZH2_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiI_#5_P4H7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (thiI_#5_P4H7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100735547-1869129 07F08_rep_A_Piracetama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100735547-1869129 07F08_rep_A_Piracetama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kup_P3E3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (kup_P3E3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113450507-1922466 2_F10_IZH2_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113450507-1922466 2_F10_IZH2_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132944583-1733919 1fb Skin 2 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090213/raw/9March2022_027_VH BK Trang 10x_neg 2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_E6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/230.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_131_3A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/CPV_B_rep_4_B-B6_1_5520.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150417120025.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091924566-1878594 13H03_rep_D_Articaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091924566-1878594 13H03_rep_D_Articaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152336292-1868101 05H02_rep_D_Terbutaline_hemisulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152336292-1868101 05H02_rep_D_Terbutaline_hemisulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S25_0124_190125100702.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170207_015EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/99/0e1ab35caa9411adf80dd9a94d8816/input_file/SH9_20170207_015EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_F8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113220116-1922335 1_D4_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113220116-1922335 1_D4_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223414584-1870117 01A01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223414584-1870117 01A01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/appA_#2_P5F10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (appA_#2_P5F10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_008EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/5e/adbc2fa1307bd7092e0b51c3877888/input_file/QC_20170207_008EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4E07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES341.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/16FEB2021 Column3_test_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_A12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152438441-1576909 Batch2_NCIH2291_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR224h2a.mzML at line 689
error parsing attribute name, line 47318, column 18 (pMIBSDR224h2a.mzML, line 47318)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_G3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153905867-1577622 Batch7_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152125409-1576756 Batch1_HCC1937_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/728.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_115_1B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A3Pa10mm_black_P1-B-4_01_23068.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/714.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_2_P_rep_1_B-D4_1_5537.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d8_278_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 46284, column 1 (SysVirol_IFT001_1918_d8_278_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 46284)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAJ11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_12_Blood_Ma_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 87 (Mouse_12_Blood_Ma_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nadA_P4E2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (nadA_P4E2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123042926-1875918 08D08_rep_A_Temozolomidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123042926-1875918 08D08_rep_A_Temozolomidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153418239-1577383 Batch4_MDAMB435S_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hC1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hC1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/OVA2_50EV_RA2_01_22492.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_A17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114029683-1922762 3_E7_STE2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114029683-1922762 3_E7_STE2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/curA_P3E1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (curA_P3E1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B08Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_0124_190125055750.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_A3_id_negative.mzML at line 21
index 180 is out of bounds for axis 0 with size 180
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5A12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080949/ccms_peak/peaks/3injections_inj3_NEG.mzXML at line 689
attributes construct error, line 41, column 76 (3injections_inj3_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/534-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V4_LH_PSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atoE_P3H5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (atoE_P3H5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223915991-2227701 PAT43.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/268.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130833429-1877658 13E02_rep_C_Alfadolone_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130833429-1877658 13E02_rep_C_Alfadolone_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153225204-1577291 Batch5_EBC1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A3_id_negative.mzML at line 21
index 265 is out of bounds for axis 0 with size 265
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_F7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201903815-1882125 16D03_rep_D_Pidotimoda.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201903815-1882125 16D03_rep_D_Pidotimoda.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201249275-1881843 16G11_rep_B_Latanoprosta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201249275-1881843 16G11_rep_B_Latanoprosta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152031065-1576713 Batch1_UMUC3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200945223-1881706 16E08_rep_A_Pregabalinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200945223-1881706 16E08_rep_A_Pregabalinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151721158-1576558 Batch3_J82_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112733292-1874220 11F08_rep_A_(+)_-Levobunolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112733292-1874220 11F08_rep_A_(+)_-Levobunolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101731436-1869604 07A09_rep_C_Dosulepin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101731436-1869604 07A09_rep_C_Dosulepin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152502913-1576929 Batch2_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/citT_P3A8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (citT_P3A8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2D09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124843321-1876744 12B07_rep_C_N-Acetyl-L-leucinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124843321-1876744 12B07_rep_C_N-Acetyl-L-leucinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD5_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_CABIN_sample07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_CABIN_sample12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122611086-1867499 05F11_rep_A_Clebopride_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122611086-1867499 05F11_rep_A_Clebopride_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_G2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124819870-1862663 03H10_rep_B_Orphenadrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124819870-1862663 03H10_rep_B_Orphenadrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151226815-1576313 Batch5_NCIH2135_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152530856-1868188 05C10_rep_D_Ritodrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152530856-1868188 05C10_rep_D_Ritodrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123423723-1876096 08A11_rep_B_Nicotinamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123423723-1876096 08A11_rep_B_Nicotinamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121623014-1867029 04C02_rep_B_Ethisteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121623014-1867029 04C02_rep_B_Ethisteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R13h2a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 158697, column 1065 (pBlichMO17R13h2a.mzML, line 158697)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike2_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201301104-1881852 16B03_rep_B_Ezetimibeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201301104-1881852 16B03_rep_B_Ezetimibeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125352869-1862930 03C09_rep_D_Pentolinium_bitartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125352869-1862930 03C09_rep_D_Pentolinium_bitartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample162_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/20.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B14Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_3_Liver_HO_control_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_3_Liver_HO_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_C4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223721610-1870260 01D02_rep_C_Chloramphenicolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223721610-1870260 01D02_rep_C_Chloramphenicolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GD6_01_11671.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124134153-1862225 03F08_rep_A_Mebendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124134153-1862225 03F08_rep_A_Mebendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GH12_01_11573.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yaaJ_P4E9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (yaaJ_P4E9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_H9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_H9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092449938-1878847 14H01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092449938-1878847 14H01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dcuB_P4C1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (dcuB_P4C1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152052442-1867974 05C02_rep_C_Furosemidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152052442-1867974 05C02_rep_C_Furosemidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124720425-1862615 03D06_rep_B_Asenapine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124720425-1862615 03D06_rep_B_Asenapine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_G3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092733/peak/170510_PMA_LP_EP_EPO120BLANK1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113338681-1922403 2_D7_IZH2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113338681-1922403 2_D7_IZH2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/011_20uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112833316-1922179 4_C5_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112833316-1922179 4_C5_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100341661-1868941 06H06_rep_D_Brompheniramine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100341661-1868941 06H06_rep_D_Brompheniramine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_H4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_H4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123137553-1875962 08G05_rep_B_Mercaptopurinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123137553-1875962 08G05_rep_B_Mercaptopurinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc2_T4_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD2_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD2_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1K004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122035044-1879749 15D06_rep_B_Triclosanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122035044-1879749 15D06_rep_B_Triclosanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case206_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case206_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153143634-1577258 Batch4_NCIH2126_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123258912-1876027 08D02_rep_B_Emedastineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123258912-1876027 08D02_rep_B_Emedastineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112309328-1921894 3_G4_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112309328-1921894 3_G4_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121925668-1879696 15E11_rep_B_Tulobuterola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121925668-1879696 15E11_rep_B_Tulobuterola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C5_id_MSn_negative.mzML at line 21
index 304 is out of bounds for axis 0 with size 304
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/BeautyProducts_Vol4/BP7_01_17303.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C3_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_08_liver_control_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_08_liver_control_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220222_LKM_Yeast_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_A9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153020975-1577194 Batch3_647V_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1447.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1447.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_P_moranifusvs_ES97.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114856346-1875197 12G06_rep_B_Salmeterolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114856346-1875197 12G06_rep_B_Salmeterolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113159567-1874423 11B01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113159567-1874423 11B01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A4_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092253726-1878757 14C08_rep_A_Ticarcillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092253726-1878757 14C08_rep_A_Ticarcillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121657400-1867056 04H05_rep_B_Enalapril_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121657400-1867056 04H05_rep_B_Enalapril_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124259506-1862292 03G09_rep_A_Tropicamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124259506-1862292 03G09_rep_A_Tropicamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101333303-1869414 07B02_rep_B_Metixene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101333303-1869414 07B02_rep_B_Metixene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2B02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121829339-1879654 15C09_rep_B_Cladribinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121829339-1879654 15C09_rep_B_Cladribinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alsE_#1_P4E2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (alsE_#1_P4E2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180821_ES_H3K_batch10_repA_143.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125008969-1862750 03H01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125008969-1862750 03H01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092425441-1878828 14E04_rep_A_Isosorbide_mononitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092425441-1878828 14E04_rep_A_Isosorbide_mononitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/MS2/SC_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/MS2/SC_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150519876-1924449 1_H3_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150519876-1924449 1_H3_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152653685-1577021 Batch1_NCIH1299_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-PDAC10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B22_id_MSn_positive.mzML at line 21
index 703 is out of bounds for axis 0 with size 703
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150259243-1864734 02H07_rep_B_Ivermectina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150259243-1864734 02H07_rep_B_Ivermectina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_48.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_48.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD1_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151248404-1576331 Batch5_NCIH345_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125300090-1876936 12C05_rep_D_Metyraponeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125300090-1876936 12C05_rep_D_Metyraponeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O3_id_MSn_positive.mzML at line 21
index 427 is out of bounds for axis 0 with size 427
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/astC_P4B3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (astC_P4B3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122237606-1879842 15B03_rep_C_Melengestrol_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122237606-1879842 15B03_rep_C_Melengestrol_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123730619-1876245 08G01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123730619-1876245 08G01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_27_RIN_52.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_27_RIN_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180501_ES_H3K_batch4_repD_58.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_83.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/panD_P4G2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (panD_P4G2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009632_IBD200_E17_B12.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/778.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ackA_#1_P4C11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (ackA_#1_P4C11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ3_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30144 - GI-16-664.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J15_id_MSn_positive_20240503085441.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_103.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/034_CRa_H9M5_M470_L01_K1_high_pos.mzXML at line 689
Premature end of data in tag peaks line 19609, line 19613, column 56821 (034_CRa_H9M5_M470_L01_K1_high_pos.mzXML, line 19613)
Error processing file: /data/datasets/server/MassIVE/MSV000082063/raw/spectra/ZC_20141128_p2081.mzXML at line 689
Opening and ending tag mismatch: msRun line 3 and peaks, line 950, column 9 (ZC_20141128_p2081.mzXML, line 950)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123012920-1875894 08E10_rep_A_Ipsapironea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123012920-1875894 08E10_rep_A_Ipsapironea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD4_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125029174-1876823 12A07_rep_C_Clioquinola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125029174-1876823 12A07_rep_C_Clioquinola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD4_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121834887-1867133 04E05_rep_C_Diethylcarbamazine_citrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121834887-1867133 04E05_rep_C_Diethylcarbamazine_citrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ7_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHI01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_179.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_30_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_30_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092733/peak/170510_PMA_LP_EP_EPO120EPL.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009425_IBD200_E5_B10.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K14_id_MSn_negative.mzML at line 21
index 382 is out of bounds for axis 0 with size 382
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNQ525_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201041218-1877753 09A04_rep_B_Flunisolideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201041218-1877753 09A04_rep_B_Flunisolideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_D2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121928420-1879698 15C02_rep_B_Famciclovira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121928420-1879698 15C02_rep_B_Famciclovira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223651247-1870237 01D09_rep_C_Hexamethonium dibromide dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223651247-1870237 01D09_rep_C_Hexamethonium dibromide dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpI_P4E12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (atpI_P4E12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00072560.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000096497/peak/20201013_ProgressCurveAnalysis_PykF_set4_eff7_t1_rep2.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000096497/peak/20201013_ProgressCurveAnalysis_PykF_set4_eff7_t1_rep2.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_C6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG16.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125650321-1877112 13H07_rep_A_Alcuronium_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125650321-1877112 13H07_rep_A_Alcuronium_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1335.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1335.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S005_dilute_190131201601.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153247372-1868524 06D03_rep_B_Corticosteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153247372-1868524 06D03_rep_B_Corticosteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114419803-1922967 4_G5_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114419803-1922967 4_G5_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224017553-1870396 01B04_rep_D_Hydroflumethiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224017553-1870396 01B04_rep_D_Hydroflumethiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112118652-1873056 10E03_rep_C_Sulfapyridinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112118652-1873056 10E03_rep_C_Sulfapyridinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153528381-1577440 Batch4_SW1573_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glyA_#1_P5H3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (glyA_#1_P5H3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dcyD_#3_P4G11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (dcyD_#3_P4G11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201327583-1881872 16A05_rep_B_Nevirapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201327583-1881872 16A05_rep_B_Nevirapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpp_#1_P4A2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (lpp_#1_P4A2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153310559-1577328 Batch4_NCIH1666_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES335.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/986.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130525592-1877508 13F06_rep_C_Ethamsylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130525592-1877508 13F06_rep_C_Ethamsylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_08P_A6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_22_NOR_52.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_22_NOR_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ12101422.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4A12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130859618-1877679 13B06_rep_C_Naftopidil_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130859618-1877679 13B06_rep_C_Naftopidil_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/389.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rbsD_P4H12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (rbsD_P4H12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007511_031618-0.01Thr3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223225345-1870034 01D03_rep_B_Epirizoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223225345-1870034 01D03_rep_B_Epirizoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ilvE_#5_P4H10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (ilvE_#5_P4H10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170127_033ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a3/9bcc48c3e5b3885ad2e5c4ee840cd6/input_file/SH9_20170127_033ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_115_3A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111539286-1921507 1_D4_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111539286-1921507 1_D4_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123007519-1867688 05D09_rep_B_Pemirolast_potassiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123007519-1867688 05D09_rep_B_Pemirolast_potassiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/blank_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151850858-1576632 Batch7_M14_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/40-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GE12_01_11696.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR324h3a.mzML at line 689
Opening and ending tag mismatch: cvray line 108381 and binaryDataArray, line 108386, column 31 (pBpumR324h3a.mzML, line 108386)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145635757-1863951 02D06_rep_A_Haloperidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145635757-1863951 02D06_rep_A_Haloperidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_343.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28022021_Batch02_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151845001-1576627 Batch7_NCIH2444_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111859124-1921679 2_E7_GAP1_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111859124-1921679 2_E7_GAP1_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-018_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200553265-1881535 16F11_rep_A_Ritonavira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200553265-1881535 16F11_rep_A_Ritonavira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112808635-1922157 4_C9_GPR1_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112808635-1922157 4_C9_GPR1_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ilvE_#5_P4H10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (ilvE_#5_P4H10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_13_P4A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024900 (ctrl_13_P4A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/suhB_#1_P4C2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (suhB_#1_P4C2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD2_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170125_013EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/48/cbfe1b5723f4053b5f6c6efddc5b53/input_file/SH10_20170125_013EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-qc_med (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/591.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D22_id_MSn_positive.mzML at line 21
index 544 is out of bounds for axis 0 with size 544
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yggF_P3C1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (yggF_P3C1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trkG_P4C3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (trkG_P4C3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112102428-1921784 2_F1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112102428-1921784 2_F1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_018EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/36/9499587a1d9b0b9f51a3950450c289/input_file/QC_20170209_018EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_B9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Blank_3_B-A1_1_5820.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1583.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1583.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201212224-1877819 09E06_rep_B_Ibutilide_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201212224-1877819 09E06_rep_B_Ibutilide_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125854699-1877208 13D05_rep_A_Cyclopenthiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125854699-1877208 13D05_rep_A_Cyclopenthiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151928818-1867906 05D06_rep_C_Hycanthonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151928818-1867906 05D06_rep_C_Hycanthonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100916590-1869209 07F02_rep_A_Pirenperonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100916590-1869209 07F02_rep_A_Pirenperonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1A12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR224h1b.mzML at line 689
Opening and ending tag mismatch: binaryDataArray line 203034 and spectrum, line 203088, column 20 (pBpumR224h1b.mzML, line 203088)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009544_IBD200_E12_B2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cpsG_P3C2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (cpsG_P3C2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (19).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121208493-1879367 14A01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121208493-1879367 14A01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD4_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112126451-1873543 10C07_rep_C_Glycopyrrolatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112126451-1873543 10C07_rep_C_Glycopyrrolatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_A8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N17_id_MSn_negative.mzML at line 21
index 344 is out of bounds for axis 0 with size 344
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_B1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET31.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET31.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/FIL2_MS_RA3_01_22494.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person22_RBC_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 81 (Person22_RBC_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125111096-1876854 12H08_rep_C_Deoxycorticosteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125111096-1876854 12H08_rep_C_Deoxycorticosteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121102139-1879317 14D09_rep_D_Benzylpenicillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121102139-1879317 14D09_rep_D_Benzylpenicillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N3_id_MSn_positive.mzML at line 21
index 589 is out of bounds for axis 0 with size 589
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dppA_P3H8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (dppA_P3H8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223210489-1870023 01F04_rep_B_Triflupromazine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223210489-1870023 01F04_rep_B_Triflupromazine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2F01P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mmuM_#3_P4C10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (mmuM_#3_P4C10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1028.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ1_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/old/MC_1_2_3_4 Pos Reps/MC_1_2_3_4 Pos Reps/DataMC_MF_Pos_1_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/old/MC_1_2_3_4 Pos Reps/MC_1_2_3_4 Pos Reps/DataMC_MF_Pos_1_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_42_NOR_15.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_42_NOR_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/39-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6H08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130136711-1877330 13H05_rep_B_Pancuronium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130136711-1877330 13H05_rep_B_Pancuronium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_092a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130637671-1877565 13H01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130637671-1877565 13H01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fdnH_P3H4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (fdnH_P3H4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30248 - GI-18-779.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125125943-1862811 03G10_rep_C_Nefopam_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125125943-1862811 03G10_rep_C_Nefopam_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153323120-1868552 06F08_rep_B_Meclozine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153323120-1868552 06F08_rep_B_Meclozine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101531139-1869506 07E10_rep_C_Mesoridazine_besylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101531139-1869506 07E10_rep_C_Mesoridazine_besylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gcvH_P3F12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (gcvH_P3F12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/CORN_AD1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180412_ES_H3K_batch7_repB_85.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD2_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E18_id_MSn_negative.mzML at line 21
index 324 is out of bounds for axis 0 with size 324
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224033564-1870408 01C08_rep_D_Doxylamine succinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224033564-1870408 01C08_rep_D_Doxylamine succinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/menB_P3B8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (menB_P3B8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_C6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111714975-1921589 1_D5_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111714975-1921589 1_D5_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A2_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112417026-1874064 10C01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112417026-1874064 10C01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114045871-1922776 3_D1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114045871-1922776 3_D1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080965/peak/ME3152111.mzML at line 689
Specification mandates value for attribute binary, line 15048, column 39 (ME3152111.mzML, line 15048)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sodA_#1_P5F3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (sodA_#1_P5F3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112948573-1874326 11C02_rep_B_Azlocillin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112948573-1874326 11C02_rep_B_Azlocillin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122220203-1867312 04E08_rep_D_Oxybutynin_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122220203-1867312 04E08_rep_D_Oxybutynin_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O19_id_MSn_negative.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yicI_P4D9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (yicI_P4D9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_G7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Blank_pesticide_170404132216.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/3.3_ITA.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H14_id_negative.mzML at line 21
index 257 is out of bounds for axis 0 with size 257
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ05151546.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170207_052EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a7/c5464985035e4bb929ec203ed3b866/input_file/MMW4_20170207_052EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7D08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201507181-1877947 09G06_rep_C_Methyl_benzethonium_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201507181-1877947 09G06_rep_C_Methyl_benzethonium_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_A8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nanE_#3_P4F6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (nanE_#3_P4F6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/001_FC_1_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153109982-1868448 06A08_rep_B_Adamantamine_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153109982-1868448 06A08_rep_B_Adamantamine_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122919404-1867650 05E04_rep_B_Colchicinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122919404-1867650 05E04_rep_B_Colchicinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Blank_pesticide_Swabs_170403182939.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A7Pa5mm_black_P1-B-5_01_23069.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/489-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080949/ccms_peak/peaks/3injections_inj1_POS.mzXML at line 689
attributes construct error, line 41, column 76 (3injections_inj1_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_35.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_35.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA14.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC12_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180628_ES_H3K_bacth8_repC_110.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125104369-1876849 12F04_rep_C_Primidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125104369-1876849 12F04_rep_C_Primidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165918028-2227581 PAT40.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7B02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/006_Ammonia_Day17_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/754.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frdC_P4G2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (frdC_P4G2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122616125-1867503 05D05_rep_A_Clopamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122616125-1867503 05D05_rep_A_Clopamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O18_id_MSn_negative.mzML at line 21
index 361 is out of bounds for axis 0 with size 361
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person26_plasma_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person26_plasma_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153108920-1577230 Batch3_NCIH661_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201410559-1881904 16G05_rep_B_Lomerizine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201410559-1881904 16G05_rep_B_Lomerizine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911141145301-1877683 12C07_rep_C_Fluspirilenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911141145301-1877683 12C07_rep_C_Fluspirilenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201215_LKM_NoBeads_nBut_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_ehigh (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152143423-1868015 05D03_rep_C_Dobutamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152143423-1868015 05D03_rep_C_Dobutamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_A4_id_negative.mzML at line 21
index 194 is out of bounds for axis 0 with size 194
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151326815-1576363 Batch6_SR8714_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES345.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD1_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_132.mzXML at line 689
Premature end of data in tag peaks line 23261, line 23265, column 11844 (20121114_132.mzXML, line 23265)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122936554-1875866 08C07_rep_A_Alfacalcidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122936554-1875866 08C07_rep_A_Alfacalcidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100836407-1869177 07B01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100836407-1869177 07B01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092523888-1878874 14C09_rep_B_Thiethylperazine_dimalate_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092523888-1878874 14C09_rep_B_Thiethylperazine_dimalate_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_A4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD3_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122802933-1867590 05H08_rep_A_Clomiphene_citrate_(Z,E)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122802933-1867590 05H08_rep_A_Clomiphene_citrate_(Z,E)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD2_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121912301-1879686 15E08_rep_B_Desloratadinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121912301-1879686 15E08_rep_B_Desloratadinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_G1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/Blank5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125306004-1862892 03C10_rep_C_Aminopurine,_6-benzyla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125306004-1862892 03C10_rep_C_Aminopurine,_6-benzyla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007643_032118-0.01Thr6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_D5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202151216-1878254 09C08_rep_D_Acefyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202151216-1878254 09C08_rep_D_Acefyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095328/peak/MS_RAW_data/230811_BBT301_TPP_HighPH_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007567_031718-5CRP1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_H3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_29.mzXML at line 689
Premature end of data in tag peaks line 19181, line 19185, column 3658 (20121114_29.mzXML, line 19185)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_56.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Pos/P5.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113111259-1922275 1_E8_IZH2_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113111259-1922275 1_E8_IZH2_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/281.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD4_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD4_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102018720-1869740 07B11_rep_D_Ethamivanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102018720-1869740 07B11_rep_D_Ethamivanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124213847-1876471 08H09_rep_D_Dexfenfluramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124213847-1876471 08H09_rep_D_Dexfenfluramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_82.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroA_#5_P4B4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (aroA_#5_P4B4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222727609-1869810 01B10_rep_A_Captoprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222727609-1869810 01B10_rep_A_Captoprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_C5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124621252-1862568 03B07_rep_B_Iproniazide_phosphatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124621252-1862568 03B07_rep_B_Iproniazide_phosphatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201241425-1881837 16C10_rep_B_Ethoxzolamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201241425-1881837 16C10_rep_B_Ethoxzolamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/309.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_73.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw4_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_C3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GF1_01_11527.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mscK_P3H1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (mscK_P3H1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/205.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0022_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhaB_P3F8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (rhaB_P3F8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample081.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114337337-1874947 12B05_rep_A_Butylparabenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114337337-1874947 12B05_rep_A_Butylparabenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample020.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151657127-1576538 Batch7_NCIH226_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152420828-1576895 Batch2_NCIH226_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00077191.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125146922-1876880 12C08_rep_C_S-(+)-ibuprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125146922-1876880 12C08_rep_C_S-(+)-ibuprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_188.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180625_ES_H3K_bacth8_repA_108.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152213482-1576794 Batch1_LK2_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101652543-1869572 07B09_rep_C_Artemisininb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101652543-1869572 07B09_rep_C_Artemisininb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086335/ccms_peak/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Diaporthe CarGL-8A/M8A1Ca.mzML at line 689
error parsing attribute name, line 890, column 76 (M8A1Ca.mzML, line 890)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091735601-1878507 13E06_rep_D_Apramycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091735601-1878507 13E06_rep_D_Apramycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/924.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2E05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J10_id_MSn_positive.mzML at line 21
index 499 is out of bounds for axis 0 with size 499
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P9_id_MSn_positive.mzML at line 21
index 372 is out of bounds for axis 0 with size 372
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122444607-1867429 04A03_rep_D_Flavoxate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122444607-1867429 04A03_rep_D_Flavoxate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114225420-1922865 4_H3_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114225420-1922865 4_H3_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095419/peak/Maissy_PCOS_mzml/P2_C4_48L.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000095419/peak/Maissy_PCOS_mzml/P2_C4_48L.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200714083-1881595 16H06_rep_A_Valsartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200714083-1881595 16H06_rep_A_Valsartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152148000-1576774 Batch2_MDAMB468_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153033908-1868420 06B03_rep_B_Amifostinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153033908-1868420 06B03_rep_B_Amifostinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GE8_01_11520.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/2.1_VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phoA_P4H8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (phoA_P4H8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150415132404.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112518327-1874113 10B04_rep_D_Metoprolol-(+,-)_(+)-tartrate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112518327-1874113 10B04_rep_D_Metoprolol-(+,-)_(+)-tartrate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD1_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD1_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222746379-1869824 01A03_rep_A_Allantoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222746379-1869824 01A03_rep_A_Allantoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GE11_01_11523.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_04_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_04_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201203741-1881809 16E04_rep_B_Clopidogrela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201203741-1881809 16E04_rep_B_Clopidogrela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C4_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C6_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Sphingomonas_sp_MSR01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F3_id_negative.mzML at line 21
index 235 is out of bounds for axis 0 with size 235
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mobA_P3E10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (mobA_P3E10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202557664-1878448 10G09_rep_A_Hexylcaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202557664-1878448 10G09_rep_A_Hexylcaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122710817-1867547 05B07_rep_A_Chlormezanoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122710817-1867547 05B07_rep_A_Chlormezanoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101951711-1869718 07C03_rep_D_Biperiden_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101951711-1869718 07C03_rep_D_Biperiden_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GC10_01_11490.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ1_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_03_liver_control_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_03_liver_control_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093235735-1879209 14A05_rep_C_Prednicarbateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093235735-1879209 14A05_rep_C_Prednicarbateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ7_5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GA4_01_11615.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092215646-1878727 14D06_rep_A_(R)-Propranolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092215646-1878727 14D06_rep_A_(R)-Propranolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200758372-1881627 16C09_rep_A_Actarita.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200758372-1881627 16C09_rep_A_Actarita.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD6_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OAW3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Blank_pesticide_170403205634.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113702113-1874628 11D07_rep_C_Indoprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113702113-1874628 11D07_rep_C_Indoprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111948998-1921721 2_D9_GAP1_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111948998-1921721 2_D9_GAP1_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_20_AC+_52.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1143.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1143.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_12_dorsal_skin_RESV_skin_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_12_dorsal_skin_RESV_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d1_283_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 36866, column 1 (SysVirol_IFL001_Cal04RG_d1_283_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 36866)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153959173-1577667 Batch6_DU4475_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087354/raw/190814_Serin_WP1.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_030EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/cf/8af2d6cb6958432f696a4af2771aaf/input_file/QC_20170207_030EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122109122-1879775 15A09_rep_B_Mepivacaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122109122-1879775 15A09_rep_B_Mepivacaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V3_EDTAk3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_blood_1h_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Volunteer3_blood_1h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GC10_01_17047.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/cit-icit_acnB_P3D11_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024900 (cit-icit_acnB_P3D11_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125041559-1862776 03F04_rep_C_Fenspiride_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125041559-1862776 03F04_rep_C_Fenspiride_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/blank_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125144195-1876878 12A05_rep_C_Meglumineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125144195-1876878 12A05_rep_C_Meglumineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narG_P3H12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (narG_P3H12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_102.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/18.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101034677-1869271 07G02_rep_B_Ciclopirox_ethanolaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101034677-1869271 07G02_rep_B_Ciclopirox_ethanolaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIAJ05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8B03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_A8_id_negative.mzML at line 21
index 186 is out of bounds for axis 0 with size 186
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152639147-1868241 06C02_rep_A_Suloctidilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152639147-1868241 06C02_rep_A_Suloctidilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150646904-1864909 02E07_rep_C_Mefloquine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150646904-1864909 02E07_rep_C_Mefloquine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G02Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/429.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/003_Ammonia_Day14_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ3_4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_C5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114136457-1922821 4_C3_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114136457-1922821 4_C3_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113134085-1874403 11A07_rep_B_Trimipramine_maleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113134085-1874403 11A07_rep_B_Trimipramine_maleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122418775-1867408 04E02_rep_D_Fludrocortisone_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122418775-1867408 04E02_rep_D_Fludrocortisone_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_blank_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD5_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092846063-1879031 14C10_rep_C_Mesalamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092846063-1879031 14C10_rep_C_Mesalamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075949.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_C8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V3_LH.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082793/ccms_peak/raw/MTBLS227/37382-A08-2.mzXML at line 689
Premature end of data in tag peaks line 1419, line 1423, column 118446 (37382-A08-2.mzXML, line 1423)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1145.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114059402-1922788 4_F1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114059402-1922788 4_F1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case189_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case189_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152620243-1576993 Batch2_OVCAR8_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/003_Ammonia_Day9_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/457-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122044013-1867235 04E06_rep_C_Chenodiolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122044013-1867235 04E06_rep_C_Chenodiolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/astA_#1_P4F9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (astA_#1_P4F9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201441847-1877929 09F10_rep_C_Hexestrolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201441847-1877929 09F10_rep_C_Hexestrolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_E10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152900592-1577128 Batch3_A549_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112838416-1922184 4_E1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112838416-1922184 4_E1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/007_1029_1_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/umpG_P3B7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (umpG_P3B7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121935149-1879703 15B04_rep_B_Bromhexine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121935149-1879703 15B04_rep_B_Bromhexine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100439690-1868987 06B07_rep_D_Bacampicillin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100439690-1868987 06B07_rep_D_Bacampicillin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151446720-1924937 4_A7_SNF3_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151446720-1924937 4_A7_SNF3_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113142935-1874410 11E05_rep_B_Procyclidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113142935-1874410 11E05_rep_B_Procyclidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114034362-1922766 3_A8_STE2_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114034362-1922766 3_A8_STE2_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152920610-1577145 Batch3_ACHN_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM4V009.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125528612-1863008 03E02_rep_D_Ranitidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125528612-1863008 03E02_rep_D_Ranitidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EBM012A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2D08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/305.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152515048-1576939 Batch2_OVCAR8_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N6_id_negative.mzML at line 21
index 242 is out of bounds for axis 0 with size 242
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_F7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/64-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_G4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/489.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgaC_P4C4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (pgaC_P4C4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112654234-1874189 11G03_rep_A_Raloxifene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112654234-1874189 11G03_rep_A_Raloxifene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112819794-1874257 11B04_rep_A_Bucladesine_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112819794-1874257 11B04_rep_A_Bucladesine_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/24_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/181-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_24_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_24_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_blood_0h_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Volunteer3_blood_0h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122345771-1879894 15F03_rep_C_Atorvastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122345771-1879894 15F03_rep_C_Atorvastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112337244-1874032 10G08_rep_D_Merbromina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112337244-1874032 10G08_rep_D_Merbromina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrfB_P4G5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (nrfB_P4G5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007730_032318-0.01Thr4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0025_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101510750-1869491 07E01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101510750-1869491 07E01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009592_IBD200_E15_B8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/678.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30127 - GI-16-109.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153633932-1868704 06G07_rep_C_Efavirenza.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153633932-1868704 06G07_rep_C_Efavirenza.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_H6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_H6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/027_CRa_H9M5_M470_H14_K3_high_pos.mzXML at line 689
Premature end of data in tag peaks line 19115, line 19119, column 40436 (027_CRa_H9M5_M470_H14_K3_high_pos.mzXML, line 19119)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNS580_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1448.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1448.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B4_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_014_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD4_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_med (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroB_P4H7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (aroB_P4H7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125100529-1862791 03A10_rep_C_Hydralazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125100529-1862791 03A10_rep_C_Hydralazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F22_id_MSn_negative.mzML at line 21
index 310 is out of bounds for axis 0 with size 310
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124717928-1862613 03F08_rep_B_Mebendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124717928-1862613 03F08_rep_B_Mebendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113307821-1922376 1_D8_IZH2_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113307821-1922376 1_D8_IZH2_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111841125-1872066 10C04_rep_C_Medrysonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111841125-1872066 10C04_rep_C_Medrysonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_G7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153909442-1577625 Batch6_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I17_id_MSn_negative.mzML at line 21
index 346 is out of bounds for axis 0 with size 346
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101921195-1869693 07F10_rep_D_Thiocolchicosidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101921195-1869693 07F10_rep_D_Thiocolchicosidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_E7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHL21.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD1_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122157387-1879811 15A10_rep_C_Rifaximinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122157387-1879811 15A10_rep_C_Rifaximinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121517593-1879507 15B09_rep_A_Methenamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121517593-1879507 15B09_rep_A_Methenamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K19_id_MSn_positive.mzML at line 21
index 739 is out of bounds for axis 0 with size 739
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170125_017EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/05/bce02accf3d94aee3579b66466e305/input_file/MMW5_20170125_017EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dapA_#3_P4A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (dapA_#3_P4A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc5 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Blank_MeOH_1_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OD2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_46_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_46_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_C12_id_negative.mzML at line 21
index 253 is out of bounds for axis 0 with size 253
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152743905-1577063 Batch2_OVCAR4_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145914512-1864079 02F07_rep_A_Astemizolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145914512-1864079 02F07_rep_A_Astemizolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample017_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_70.mzXML at line 689
Premature end of data in tag peaks line 19878, line 19882, column 11844 (20121114_70.mzXML, line 19882)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180418_ES_H3K_batch6_repB_92.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A2_id_negative.mzML at line 21
index 257 is out of bounds for axis 0 with size 257
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28022021_Batch02_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD1_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153654789-1577512 Batch4_RT4_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113518279-1874545 11A04_rep_C_Pyrithyldioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113518279-1874545 11A04_rep_C_Pyrithyldioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_3_Liver_HO_control_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_3_Liver_HO_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_95.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007527_031618-1Thr1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165747959-2227498 PAT39.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152057171-1867978 05H10_rep_C_Prochlorperazine_dimaleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152057171-1867978 05H10_rep_C_Prochlorperazine_dimaleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100535616-1869032 06E09_rep_D_Hydroxytacrine_maleate_(R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100535616-1869032 06E09_rep_D_Hydroxytacrine_maleate_(R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150239460-1864719 02F11_rep_B_Tetracycline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150239460-1864719 02F11_rep_B_Tetracycline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2F10_160528150812.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cyoA_P4B3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (cyoA_P4B3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_Timedependent/mzML/B_15102011_D1_Neg_cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009563_IBD200_E13_A7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130034687-1863260 04D07_rep_A_Bumetanidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130034687-1863260 04D07_rep_A_Bumetanidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153144889-1577259 Batch4_NCIH2126_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153911854-1577627 Batch6_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124637375-1876680 09H07_rep_A_Pramoxine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124637375-1876680 09H07_rep_A_Pramoxine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200931569-1877702 09B06_rep_B_Halcinonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200931569-1877702 09B06_rep_B_Halcinonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1586.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1586.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5C1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5C1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/922-A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080113/ccms_peak/Erythro_test_1/ivoS LIBR B20T3-1_AUTOMSMS.mzXML at line 689
Extra content at the end of the document, line 150794, column 1 (ivoS LIBR B20T3-1_AUTOMSMS.mzXML, line 150794)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201525741-1877959 09A10_rep_C_Etanidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201525741-1877959 09A10_rep_C_Etanidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202055017-1878210 09A01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202055017-1878210 09A01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_31_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_31_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/iaaA_P3G2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (iaaA_P3G2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N3.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8B06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trpB_#2_P5B5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (trpB_#2_P5B5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_aqueous_longstudy_230215_171.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/025_CRa_H9M5_M470_C03_K1_high_pos.mzXML at line 689
Premature end of data in tag peaks line 19818, line 19822, column 32245 (025_CRa_H9M5_M470_C03_K1_high_pos.mzXML, line 19822)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD6_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/garD_P3F6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (garD_P3F6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145755873-1864016 02B07_rep_A_Guanabenz acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145755873-1864016 02B07_rep_A_Guanabenz acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/005_Urea_Day2_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD2_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150021768-1864132 02G07_rep_B_Tamoxifen citrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150021768-1864132 02G07_rep_B_Tamoxifen citrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case238_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case238_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_18_male_2022_1017_Michael_neg-0.0038.mzML at line 689
Premature end of data in tag binary line 17945, line 17945, column 523265 (2_18_male_2022_1017_Michael_neg-0.0038.mzML, line 17945)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007612_032118-Unst2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153036046-1577205 Batch3_NCIH460DNP53_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/006_Soil_500mMIntra_3_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case221_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case221_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V7_EDTAk2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_235.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130809933-1877639 13C02_rep_C_Nitrocaramiphen_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130809933-1877639 13C02_rep_C_Nitrocaramiphen_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A4_id_negative.mzML at line 21
index 257 is out of bounds for axis 0 with size 257
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152109105-1576743 Batch1_NCIH2030_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123658882-1876220 08H01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123658882-1876220 08H01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113205092-1922322 1_A9_IZH2_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113205092-1922322 1_A9_IZH2_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151143111-1576277 Batch5_PC14PE6_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GA7_01_11907.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085043/ccms_peak/T_2020-02-20_Seg1T2.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000085043/ccms_peak/T_2020-02-20_Seg1T2.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112242566-1873603 10B08_rep_D_Trimetozinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112242566-1873603 10B08_rep_D_Trimetozinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/Alb-PDI-liver-35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C6_id_MSn_negative.mzML at line 21
index 289 is out of bounds for axis 0 with size 289
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_E11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD5_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200922289-1881689 16D01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200922289-1881689 16D01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123417460-1876091 08C04_rep_B_Papaverine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123417460-1876091 08C04_rep_B_Papaverine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ccmA_P3C2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (ccmA_P3C2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093016832-1879102 14C08_rep_C_Ticarcillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093016832-1879102 14C08_rep_C_Ticarcillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person23_plasma_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person23_plasma_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_QC11.mzXML at line 689
Premature end of data in tag msRun line 5, line 21781, column 1 (L_QC11.mzXML, line 21781)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_38_RIN_30.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_38_RIN_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_E4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201238702-1881835 16F07_rep_B_Flumethasone_pivalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201238702-1881835 16F07_rep_B_Flumethasone_pivalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR23h3a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 246128, column 2468 (pBlateR23h3a.mzML, line 246128)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_A6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_101a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/FIL2_50EV_RA3_01_22498.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113736023-1922609 3_D8_STE2_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113736023-1922609 3_D8_STE2_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124239424-1862276 03H03_rep_A_Scopolamin-N-oxide_hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124239424-1862276 03H03_rep_A_Scopolamin-N-oxide_hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124423686-1862359 03E06_rep_A_Tolfenamic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124423686-1862359 03E06_rep_A_Tolfenamic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8F10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narZ_#1_P4H7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (narZ_#1_P4H7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case130_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case130_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_A4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-034_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7B12_160604002901.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201122688-1881778 16G10_rep_B_Oxymetholoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201122688-1881778 16G10_rep_B_Oxymetholoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-faux (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150500680-1864827 02F09_rep_C_Terfenadineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150500680-1864827 02F09_rep_C_Terfenadineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-066.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-066.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092960/raw/HILIC_plusDDA/HILIC/20221111-JC-471_HILIC_087_01.mzML at line 689
Premature end of data in tag binary line 97341, line 97341, column 8244 (20221111-JC-471_HILIC_087_01.mzML, line 97341)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5E01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087808/raw/RIGHT_SSL_EI_sleep_STER_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1624_130302175632.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1624_130302175632.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153828251-1868796 06A02_rep_C_Testosterone_propionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153828251-1868796 06A02_rep_C_Testosterone_propionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201335132-1877880 09D04_rep_C_Opipramol_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201335132-1877880 09D04_rep_C_Opipramol_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125520467-1877043 12D01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125520467-1877043 12D01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153756992-1868771 06G02_rep_C_Tropisetron_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153756992-1868771 06G02_rep_C_Tropisetron_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153102222-1868442 06B10_rep_B_Bisacodyla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153102222-1868442 06B10_rep_B_Bisacodyla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD6_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gmhA_P4D12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (gmhA_P4D12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/221.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130233543-1877374 13F01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130233543-1877374 13F01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ05031566.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNS580_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114350788-1874958 12H04_rep_A_(R)-(+)-Atenolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114350788-1874958 12H04_rep_A_(R)-(+)-Atenolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201442030-1881928 16D06_rep_C_Cefpiramideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201442030-1881928 16D06_rep_C_Cefpiramideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101128704-1869314 07E10_rep_B_Mesoridazine_besylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101128704-1869314 07E10_rep_B_Mesoridazine_besylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145759509-1864019 02G10_rep_A_Thioproperazine dimesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145759509-1864019 02G10_rep_A_Thioproperazine dimesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_81.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_81.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145833215-1864046 02B10_rep_A_Mianserine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145833215-1864046 02B10_rep_A_Mianserine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_E5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_199.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/caiD_#5_P5H12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (caiD_#5_P5H12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122249989-1867336 04B01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122249989-1867336 04B01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/QC_G2_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114058545-1874818 11G10_rep_D_Phthalylsulfathiazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114058545-1874818 11G10_rep_D_Phthalylsulfathiazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GB7_01_12087.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ppiscicida/WithKBr/140225B2.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F13_id_MSn_positive.mzML at line 21
index 414 is out of bounds for axis 0 with size 414
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190124_ES_H3K_batch15_repC_55.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121952616-1867194 04C01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121952616-1867194 04C01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112158373-1873568 10D03_rep_D_Phenazopyridine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112158373-1873568 10D03_rep_D_Phenazopyridine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151643348-1925031 4_F1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151643348-1925031 4_F1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpMat2_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/004_Nitrate_Day7_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113641262-1874611 11H07_rep_C_Bicalutamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113641262-1874611 11H07_rep_C_Bicalutamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100846563-1869185 07C04_rep_A_Cetirizine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100846563-1869185 07C04_rep_A_Cetirizine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151203572-1576294 Batch5_MALME3M_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172634392-1889896 Wa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_E5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153534771-1868656 06H03_rep_C_Itopridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153534771-1868656 06H03_rep_C_Itopridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ANT1_MS_RA3_01_22645.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/350.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_216.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112311509-1921896 3_D4_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112311509-1921896 3_D4_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150611273-1924493 1_D2_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150611273-1924493 1_D2_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_B7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/123-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H11_id_MSn_negative.mzML at line 21
index 332 is out of bounds for axis 0 with size 332
Error processing file: /data/datasets/server/MassIVE/MSV000082735/ccms_peak/ST000664/EX00347-lipidomics/Raw data/POS/BATCH2/20150323_Pooled.mzXML at line 689
Extra content at the end of the document, line 67717, column 1 (20150323_Pooled.mzXML, line 67717)
Error processing file: /data/datasets/server/MassIVE/MSV000091027/ccms_peak/2021_1014Proteome01.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000091027/ccms_peak/2021_1014Proteome01.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/TM-plasma-VLDL-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/427.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.MG1_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B11_id_MSn_negative.mzML at line 21
index 242 is out of bounds for axis 0 with size 242
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnE_P5B6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (phnE_P5B6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_72.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114552993-1875053 12D01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114552993-1875053 12D01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125722788-1863101 03B09_rep_D_Mephenesinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125722788-1863101 03B09_rep_D_Mephenesinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/148_120.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C10_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike6_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/106-5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130250094-1877387 13C06_rep_B_Guaiacola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130250094-1877387 13C06_rep_B_Guaiacola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIAD01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122818221-1880105 15E11_rep_D_Tulobuterolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122818221-1880105 15E11_rep_D_Tulobuterolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124854089-1876752 12F01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124854089-1876752 12F01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_19_Blood_EtOH_control_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_19_Blood_EtOH_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E6_id_MSn_positive.mzML at line 21
index 640 is out of bounds for axis 0 with size 640
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_136_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Heart_raw files/Lumos_ISAS_heart_QC4.mzML at line 689
Premature end of data in tag spectrumList line 92, line 184966, column 1 (Lumos_ISAS_heart_QC4.mzML, line 184966)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130117478-1877315 13D04_rep_B_Ribavirina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130117478-1877315 13D04_rep_B_Ribavirina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095538/raw/3dhq_12C_CE40_msAG222_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024766 (3dhq_12C_CE40_msAG222_Aquity_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151220156-1924811 3_A9_SNF3_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151220156-1924811 3_A9_SNF3_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30129 - GI-16-238.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_G8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153818473-1577582 Batch6_HCC1806_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/COR2_MS_RA1_01_22544.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person08_blood_elder_POS.mzXML at line 689
attributes construct error, line 41, column 100 (Person08_blood_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_sample10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092712443-1878958 14A05_rep_B_Prednicarbatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092712443-1878958 14A05_rep_B_Prednicarbatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_B1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/chbF_P3F10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (chbF_P3F10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GC3_01_12098.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092331977-1878787 14H09_rep_A_Cefepime_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092331977-1878787 14H09_rep_A_Cefepime_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091909115-1878582 13H10_rep_D_Levocabastine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091909115-1878582 13H10_rep_D_Levocabastine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153928319-1577641 Batch6_NCIH1299_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N21_id_negative.mzML at line 21
index 269 is out of bounds for axis 0 with size 269
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201456801-1877940 09H02_rep_C_Sulfabenzamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201456801-1877940 09H02_rep_C_Sulfabenzamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_11_B-A2_1_5686.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170125_038EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/58/66184678370adce5e4d3598f068457/input_file/SH10_20170125_038EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000081911/ccms_peak/160113_CFB_7_org_v.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_P_E2E3_C_IMS_11Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007536_031618-1Thr4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I6_id.mzML at line 21
index 547 is out of bounds for axis 0 with size 547
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211206_LKM_mb_beads_rapid_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114619319-1875073 12D11_rep_A_L(-)-vesamicol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114619319-1875073 12D11_rep_A_L(-)-vesamicol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_C8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_72.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114102683-1922791 4_H9_STE2_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114102683-1922791 4_H9_STE2_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H15_id_MSn_negative.mzML at line 21
index 348 is out of bounds for axis 0 with size 348
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I5_id_MSn_positive.mzML at line 21
index 561 is out of bounds for axis 0 with size 561
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_P_tolaasii_CH36.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ4_2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3H01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091712809-1878489 13D03_rep_D_Pizotifen_malateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091712809-1878489 13D03_rep_D_Pizotifen_malateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112641542-1922080 4_F10_GPR1_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112641542-1922080 4_F10_GPR1_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control66_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control66_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_P6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-qc_low.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ndk_#1_P6D5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (ndk_#1_P6D5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F7_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122654395-1867534 05G08_rep_A_Carbetapentane_citratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122654395-1867534 05G08_rep_A_Carbetapentane_citratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_60_CNR_40.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_60_CNR_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C10_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170125_051EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/97/a6d0b27c37408c9838fa11cd606b92/input_file/MMW3_20170125_051EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122852592-1880132 15E06_rep_D_Fluocinolone_acetonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122852592-1880132 15E06_rep_D_Fluocinolone_acetonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_083a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yecS_P3B1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (yecS_P3B1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009525_IBD200_E11_A7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_HT_032_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082912/ccms_peak/15NEGMSMS5_10_15eV.mzML at line 689
Premature end of data in tag binary line 2894, line 2894, column 686712 (15NEGMSMS5_10_15eV.mzML, line 2894)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N12_id_MSn_negative.mzML at line 21
index 360 is out of bounds for axis 0 with size 360
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152710159-1577035 Batch2_LOXIMVI_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130104242-1863285 04H03_rep_A_Flunarizine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130104242-1863285 04H03_rep_A_Flunarizine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201314501-1877865 09F07_rep_B_Ethotoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201314501-1877865 09F07_rep_B_Ethotoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122404227-1879908 15D08_rep_C_Olopatadine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122404227-1879908 15D08_rep_C_Olopatadine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_096a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person09_blood_elder_POS.mzXML at line 689
attributes construct error, line 41, column 101 (Person09_blood_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_C6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093128725-1879155 14D04_rep_C_Bethanechol_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093128725-1879155 14D04_rep_C_Bethanechol_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_68.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_68.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GG5_01_16988.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample232_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152331156-1868097 05A11_rep_D_Bisoprolol_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152331156-1868097 05A11_rep_D_Bisoprolol_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/codA_P3H3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (codA_P3H3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151635948-1576520 Batch7_SF295_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD5_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlA2b.mzXML at line 689
expected '>', line 718, column 11 (ExtraControlA2b.mzXML, line 718)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-qc_ehigh (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_17121408_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113250483-1922361 1_H11_IZH2_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113250483-1922361 1_H11_IZH2_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD1_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007491_031618-Unst3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124525074-1862407 03H02_rep_A_Etodolaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124525074-1862407 03H02_rep_A_Etodolaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092454907-1878851 14F03_rep_B_Ranolazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092454907-1878851 14F03_rep_B_Ranolazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_31_AC+_20.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_24_NOR_53.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_24_NOR_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_7_Blood_Ma_control_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_7_Blood_Ma_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150418112026.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210308_AD_72.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person30_plasma_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person30_plasma_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD4_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_C5_id_negative.mzML at line 21
index 210 is out of bounds for axis 0 with size 210
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N5.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5A004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Validation Set 2 JHU/Lipidomics - 230424 - 1-JHU38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153318310-1868548 06B11_rep_B_Erlotiniba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153318310-1868548 06B11_rep_B_Erlotiniba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_C11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/2ippm_leuC_P5A10_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (2ippm_leuC_P5A10_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113812522-1874684 11G07_rep_C_Azacytidine-5a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113812522-1874684 11G07_rep_C_Azacytidine-5a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample070.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folP_P6A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (folP_P6A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B8_id_MSn_positive.mzML at line 21
index 536 is out of bounds for axis 0 with size 536
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dapB_P5G7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (dapB_P5G7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample062_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/080_77.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121530185-1866988 04H06_rep_B_Minocycline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121530185-1866988 04H06_rep_B_Minocycline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170127_059ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/f4/d9899a2de2312a3d0892b226f974da/input_file/SH7_20170127_059ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2E09P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alsB_P4E8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (alsB_P4E8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223857833-1870335 01E06_rep_C_Naproxena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223857833-1870335 01E06_rep_C_Naproxena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OD1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_N4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200749919-1881621 16B02_rep_A_Ipriflavonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200749919-1881621 16B02_rep_A_Ipriflavonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151509158-1924956 4_D8_SNF3_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151509158-1924956 4_D8_SNF3_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153117718-1577237 Batch3_SKMES1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B2_id.mzML at line 21
index 577 is out of bounds for axis 0 with size 577
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152408098-1576885 Batch2_NCIH2291_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/866.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151400461-1576391 Batch7_KM12_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dkgB_P3H12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (dkgB_P3H12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlD2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlD2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114613911-1875069 12B07_rep_A_N-Acetyl-L-leucineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114613911-1875069 12B07_rep_A_N-Acetyl-L-leucineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fhuD_P3D12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (fhuD_P3D12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_58.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/951.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151937555-1576671 Batch1A_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_D2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201216_LKM_Hydrophobic_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201216_LKM_NoBeads_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130444610-1877476 13B07_rep_B_Tracazolate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130444610-1877476 13B07_rep_B_Tracazolate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A5_id_MSn_positive_2uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/230.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223131825-1869994 01A10_rep_A_Hydrochlorothiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223131825-1869994 01A10_rep_A_Hydrochlorothiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153127572-1577245 Batch4_SW156_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_153.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_153.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hycG_P4A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (hycG_P4A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GE12_01_11524.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C6_id_MSn_positive.mzML at line 21
index 415 is out of bounds for axis 0 with size 415
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079788/ccms_peak/Human_GITract_organic_renamed_mzxml_march2016/03302016_human.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223857696-2227686 Healthy5.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-qc_ehigh (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xanQ_P4E7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (xanQ_P4E7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample155.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7B09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200644515-1881573 16F03_rep_A_Indinavir_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200644515-1881573 16F03_rep_A_Indinavir_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122402885-1879907 15A08_rep_C_Valproic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122402885-1879907 15A08_rep_C_Valproic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151145799-1576279 Batch5_SBC5_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhaD_P3A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (rhaD_P3A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S25_0124.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100531821-1869029 06B08_rep_D_Lamivudinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100531821-1869029 06B08_rep_D_Lamivudinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091659057-1878478 13H05_rep_D_Pancuronium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091659057-1878478 13H05_rep_D_Pancuronium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122900464-1867635 05C01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122900464-1867635 05C01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yecC_P4B9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (yecC_P4B9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/320.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/menH_#1_P4C6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (menH_#1_P4C6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122538956-1867473 05G06_rep_A_Mitoxantrone_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122538956-1867473 05G06_rep_A_Mitoxantrone_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1325.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1325.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_G2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I11_id_MSn_positive.mzML at line 21
index 666 is out of bounds for axis 0 with size 666
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mtr_#1_P3H4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (mtr_#1_P3H4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S1cells_2_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/panF_#1_P3G3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (panF_#1_P3G3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112759793-1922149 4_A9_GPR1_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112759793-1922149 4_A9_GPR1_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sthA_#1_P5C1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (sthA_#1_P5C1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_6_40x_2022_1006_Michael_pos-0.0024.mzML at line 689
Premature end of data in tag binary line 1673, line 1673, column 2053337 (1_6_40x_2022_1006_Michael_pos-0.0024.mzML, line 1673)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/964.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/016_CRa_H9M5_M470_H01_K2_low_pos.mzXML at line 689
Premature end of data in tag peaks line 14954, line 14958, column 15863 (016_CRa_H9M5_M470_H01_K2_low_pos.mzXML, line 14958)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150602297-1864875 02D10_rep_C_Picotamide monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150602297-1864875 02D10_rep_C_Picotamide monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083396/peak/Pure_compounds_mzML/LeucinostatinAandB.mzML at line 689
Couldn't find end of Start Tag sc line 162908, line 162908, column 20 (LeucinostatinAandB.mzML, line 162908)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124840536-1876742 12E05_rep_C_Roliprama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124840536-1876742 12E05_rep_C_Roliprama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125532377-1877052 12D04_rep_D_2-Aminobenzenesulfonamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125532377-1877052 12D04_rep_D_2-Aminobenzenesulfonamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080618.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201234834-1881832 16F10_rep_B_Besifloxacin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201234834-1881832 16F10_rep_B_Besifloxacin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G05P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ulaC_P3F10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (ulaC_P3F10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153325678-1868554 06G04_rep_B_Metrizamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153325678-1868554 06G04_rep_B_Metrizamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_108.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_108.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122208525-1867303 04D05_rep_D_Prednisoloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122208525-1867303 04D05_rep_D_Prednisoloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murP_P3B3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (murP_P3B3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2E02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample036_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152345799-1868108 05D11_rep_D_Droperidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152345799-1868108 05D11_rep_D_Droperidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/CORN_AAD1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/230.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD3_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150621905-1864890 02E03_rep_C_Amfepramone hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150621905-1864890 02E03_rep_C_Amfepramone hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ispG_P5A2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ispG_P5A2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180504_ES_H3K_batch4_repB_49.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151130628-1865130 02E08_rep_D_Isoconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151130628-1865130 02E08_rep_D_Isoconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_124.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_124.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Pool_11_B-A2_1_5686.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L10_id.mzML at line 21
index 553 is out of bounds for axis 0 with size 553
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lacZ_P3E10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (lacZ_P3E10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124441594-1876592 09G03_rep_A_Succinylsulfathiazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124441594-1876592 09G03_rep_A_Succinylsulfathiazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trpC_P3D12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (trpC_P3D12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124742751-1862633 03B10_rep_B_Phenformin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124742751-1862633 03B10_rep_B_Phenformin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_57.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/288.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121618811-1879554 15D04_rep_A_Mitotanea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121618811-1879554 15D04_rep_A_Mitotanea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_16_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-qc_low (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150934563-1924668 2_A1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150934563-1924668 2_A1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180626_ES_H3K_bacth8_repB_111.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4D05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123200652-1875981 08H01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123200652-1875981 08H01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI3_5_17_1_886.mzML at line 689
Premature end of data in tag selectedIonList line 4658292, line 4658297, column 8 (50130_microPOTS_Rat_Brain_ROI3_5_17_1_886.mzML, line 4658297)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_C3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/390.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_C6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tpiA_P4B12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (tpiA_P4B12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165854294-2227559 PAT37.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_05_leg_muscle_RESV_oral_POS.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_05_leg_muscle_RESV_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201703304-1882031 16E08_rep_C_Pregabalina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201703304-1882031 16E08_rep_C_Pregabalina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152838321-1577109 Batch3_SKLU1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_1_RESV_0uM_POS.mzXML at line 689
attributes construct error, line 38, column 81 (C2C12_1_RESV_0uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122933056-1880164 15F04_rep_D_Azithromycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122933056-1880164 15F04_rep_D_Azithromycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ6_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113958053-1922734 3_E2_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113958053-1922734 3_E2_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-cc5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_A4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201919067-1878135 09H09_rep_D_Fluorometholoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201919067-1878135 09H09_rep_D_Fluorometholoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123209389-1875988 08A08_rep_B_Itraconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123209389-1875988 08A08_rep_B_Itraconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G12_id_MSn_negative.mzML at line 21
index 342 is out of bounds for axis 0 with size 342
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152806570-1577082 Batch3_SKLU1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111741371-1921612 1_G5_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111741371-1921612 1_G5_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111538796-1871539 10F09_rep_B_Proadifen_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111538796-1871539 10F09_rep_B_Proadifen_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201540284-1877970 09E05_rep_C_Mirabegrona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201540284-1877970 09E05_rep_C_Mirabegrona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_74.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hD2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hD2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_D1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130038134-1863263 04B08_rep_A_Retinoic_acid_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130038134-1863263 04B08_rep_A_Retinoic_acid_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151857922-1576638 Batch7_NCIH1993_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5F05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152440953-1576911 Batch1_NCIH1437_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112829919-1874265 11H11_rep_A_Carbacholb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112829919-1874265 11H11_rep_A_Carbacholb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150041589-1864147 02H05_rep_B_Josamycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150041589-1864147 02H05_rep_B_Josamycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J10_id_MSn_positive.mzML at line 21
index 518 is out of bounds for axis 0 with size 518
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_151.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD1_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murB_P5G7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (murB_P5G7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4A12_160531065422.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_0126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tdh_P4B7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (tdh_P4B7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145814180-1864031 02E11_rep_A_Dexamethasone acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145814180-1864031 02E11_rep_A_Dexamethasone acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-blank.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-061.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-061.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088286/ccms_peak/210924_06.mzML at line 689
Specification mandates value for attribute couAAAAAAAAAAAAAAAAAAAAAPA, line 749778, column 57 (210924_06.mzML, line 749778)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_131_2C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121950900-1879715 15G07_rep_B_Montelukastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121950900-1879715 15G07_rep_B_Montelukastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/976.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125713330-1863093 03E08_rep_D_Tiboloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125713330-1863093 03E08_rep_D_Tiboloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dppA_P3H8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (dppA_P3H8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009741_IBD200_E20_A9.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_129.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201156994-1877808 09E01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201156994-1877808 09E01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case200_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case200_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OAD4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lnt_#1_P3B12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (lnt_#1_P3B12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152835948-1577107 Batch5_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130612209-1877545 13C09_rep_C_Norgestimatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130612209-1877545 13C09_rep_C_Norgestimatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/934-A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_33_40x_2022_1006_Michael_pos-0.0059.mzML at line 689
Premature end of data in tag binary line 1217, line 1217, column 663398 (3_33_40x_2022_1006_Michael_pos-0.0059.mzML, line 1217)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123208905-1867781 05B07_rep_B_Chlormezanoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123208905-1867781 05B07_rep_B_Chlormezanoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_012ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e6/68be35a18c89cb3d5b03b34b2e5272/input_file/QC_20170127_012ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.ros_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J16_id_MSn_positive.mzML at line 21
index 540 is out of bounds for axis 0 with size 540
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/294.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD6_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210112_AD_87.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121551230-1867004 04D10_rep_B_Methylprednisolone,_6-alphaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121551230-1867004 04D10_rep_B_Methylprednisolone,_6-alphaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisF_P3C3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (hisF_P3C3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_102.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD6_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folM_P3E10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (folM_P3E10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101840051-1869660 07A10_rep_D_Ceftazidime_pentahydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101840051-1869660 07A10_rep_D_Ceftazidime_pentahydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case247_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case247_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydiO_P5E1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (ydiO_P5E1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysM_P5F7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (cysM_P5F7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114306843-1922902 4_E1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114306843-1922902 4_E1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OD1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114543404-1875046 12H10_rep_A_Proparacaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114543404-1875046 12H10_rep_A_Proparacaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GE12_01_17203.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_18092931_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_male_2022_1017_Michael_neg-0015.mzML at line 689
Premature end of data in tag binary line 29815, line 29815, column 1134394 (pooled_male_2022_1017_Michael_neg-0015.mzML, line 29815)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GB3_01_11464.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28022021_Batch02_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G20_id.mzML at line 21
index 595 is out of bounds for axis 0 with size 595
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_0124_190125025506.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153435402-1868609 06F04_rep_C_Calcipotrieneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153435402-1868609 06F04_rep_C_Calcipotrieneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A19_id_MSn_positive.mzML at line 21
index 725 is out of bounds for axis 0 with size 725
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125523245-1877045 12F10_rep_D_Iodipamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125523245-1877045 12F10_rep_D_Iodipamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170209_049ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/f6/262f287286a2f2c5d1b69f4ec76f66/input_file/SH7_20170209_049ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121846800-1879667 15D04_rep_B_Mitotaneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121846800-1879667 15D04_rep_B_Mitotaneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153300733-1577320 Batch4_NCIH2009_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152708972-1577034 Batch2_LOXIMVI_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIAI09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/256.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152805413-1577081 Batch3_HT1197_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/373.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/358.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H11_id_MSn_negative.mzML at line 21
index 334 is out of bounds for axis 0 with size 334
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130018648-1877272 13C07_rep_A_Proscillaridin_Ab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130018648-1877272 13C07_rep_A_Proscillaridin_Ab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125531036-1863010 03B06_rep_D_Aceclofenaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125531036-1863010 03B06_rep_D_Aceclofenaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150200174-1864689 02C06_rep_B_Danazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150200174-1864689 02C06_rep_B_Danazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_G6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081041.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J14_id_negative.mzML at line 21
index 275 is out of bounds for axis 0 with size 275
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201044723-1881750 16D10_rep_B_Dofetilideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201044723-1881750 16D10_rep_B_Dofetilideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009654_IBD200_E19_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/937.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113632775-1874604 11D11_rep_C_Ethopropazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113632775-1874604 11D11_rep_C_Ethopropazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_61_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_61_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151650286-1925037 4_A5_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151650286-1925037 4_A5_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095538/raw/3dhq_13C_CE20_msAG231_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024765 (3dhq_13C_CE20_msAG231_Aquity_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170209_032ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/96/867673ba30e4a4ba949ebac4b209db/input_file/MMW5_20170209_032ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124728662-1876721 09D08_rep_A_Thiamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124728662-1876721 09D08_rep_A_Thiamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122737608-1880073 15H04_rep_D_Formoterol_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122737608-1880073 15H04_rep_D_Formoterol_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151653547-1576535 Batch7_SKMES1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122711963-1880053 15B09_rep_D_Methenamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122711963-1880053 15B09_rep_D_Methenamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LEA2_MS_RA2_01_22553.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151344689-1924884 4_G3_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151344689-1924884 4_G3_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202217649-1882276 16H09_rep_D_Brimonidine_L-Tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202217649-1882276 16H09_rep_D_Brimonidine_L-Tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111756562-1921625 1_B2_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111756562-1921625 1_B2_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_73_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_73_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ4_6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007555_031618-1CRP4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ribF_P3F9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (ribF_P3F9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control167_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control167_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007732_032318-1CRP6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/446.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/006_Ammonia_Day7_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202141378-1878246 09E09_rep_D_Estropipatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202141378-1878246 09E09_rep_D_Estropipatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_159.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J13_id.mzML at line 21
index 592 is out of bounds for axis 0 with size 592
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151519912-1924964 4_B10_SNF3_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151519912-1924964 4_B10_SNF3_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150941685-1865045 02C07_rep_D_Nicorandilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150941685-1865045 02C07_rep_D_Nicorandilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d3_281_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 25514, column 1 (SysVirol_IFT001_1918_d3_281_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 25514)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_43.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_43.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K19_id_MSn_negative.mzML at line 21
index 347 is out of bounds for axis 0 with size 347
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Arthrobacter_Pseudoarthrobacter_sp_MS2F07P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_7_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1217.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1217.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G21_id.mzML at line 21
index 558 is out of bounds for axis 0 with size 558
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153621297-1577484 Batch4_NCIH810_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hC2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hC2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151634753-1576519 Batch7_MIAPACA2_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/blank1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xapA_P4C12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (xapA_P4C12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130132830-1877327 13H09_rep_B_Methyldopate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130132830-1877327 13H09_rep_B_Methyldopate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222844223-1869868 01G04_rep_A_Nifedipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222844223-1869868 01G04_rep_A_Nifedipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152332937-1576857 Batch2_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR124h3b.mzML at line 689
attributes construct error, line 23258, column 122 (pBpumR124h3b.mzML, line 23258)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/3.5_ITA.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009419_IBD200_E5_B4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1142.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_75.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152851170-1577120 Batch3_NCIH322M_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/entA_#1_P4G6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (entA_#1_P4G6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F5_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_blank_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fabB_P3D7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (fabB_P3D7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ5_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085507/ccms_peak/raw/F20200310sunr_COVID_b1_36.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (F20200310sunr_COVID_b1_36.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S01_0124_190125011521.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080705/ccms_peak/RAW/SILAC 5h.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180626_ES_H3K_bacth8_repB_118.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_347.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_60.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G6_id_MSn_negative.mzML at line 21
index 338 is out of bounds for axis 0 with size 338
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202049173-1882207 16F01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202049173-1882207 16F01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009546_IBD200_E12_B4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_4_B_rep_3_B-C7_1_5846.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1048.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/473.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M18_id_MSn_negative.mzML at line 21
index 328 is out of bounds for axis 0 with size 328
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190331571-1889795 NNb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007699_032218-5CRP4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122908079-1867641 05E08_rep_A_Benfluorexb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122908079-1867641 05E08_rep_A_Benfluorexb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111821622-1872051 10H08_rep_C_Methotrimeprazine_maleat_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111821622-1872051 10H08_rep_C_Methotrimeprazine_maleat_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152718417-1868271 06D09_rep_A_Doxorubicin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152718417-1868271 06D09_rep_A_Doxorubicin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122116690-1867261 04D07_rep_C_Bumetanideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122116690-1867261 04D07_rep_C_Bumetanideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151153669-1924788 3_D8_SNF3_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151153669-1924788 3_D8_SNF3_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091038/metadata/miltonsilva/Negative_samples/PEP-Fo-P2_Neg.mzML at line 689
Premature end of data in tag binary line 537266, line 537266, column 32202 (PEP-Fo-P2_Neg.mzML, line 537266)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/treA_P3A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (treA_P3A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123141358-1875965 08F10_rep_B_Diflorasone_Diacetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123141358-1875965 08F10_rep_B_Diflorasone_Diacetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc1_T4_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124218689-1876475 08E03_rep_D_Tizanidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124218689-1876475 08E03_rep_D_Tizanidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_009EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/cd/0fb2a1bced6cba4f38c4f0f930e15f/input_file/QC_20170207_009EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_E5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yqjH_#1_P4H3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (yqjH_#1_P4H3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153645280-1577504 Batch4_SW1573_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130600140-1877536 13G10_rep_C_Risperidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130600140-1877536 13G10_rep_C_Risperidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F8_id_MSn_negative.mzML at line 21
index 329 is out of bounds for axis 0 with size 329
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw2_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_118.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151423394-1924917 4_G10_SNF3_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151423394-1924917 4_G10_SNF3_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GB5_01_17027.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/15_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-6-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120857487-1879223 14H07_rep_D_Dorzolamide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120857487-1879223 14H07_rep_D_Dorzolamide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_18091336_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30105 - GI-14-389.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090213/ccms_peak/9March2022_026_VH WD Trang 10x_neg 3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/37-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124504288-1862391 03A09_rep_A_Nitrofurantoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124504288-1862391 03A09_rep_A_Nitrofurantoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125906819-1863188 04H06_rep_A_Minocycline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125906819-1863188 04H06_rep_A_Minocycline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/apt_#2_P4A4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (apt_#2_P4A4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152518586-1576942 Batch1_NCIH1299_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/396.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/452.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151715268-1576553 Batch7_RXF393_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tyrP_P3E11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (tyrP_P3E11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152327931-1576853 Batch2_NCIH226_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113335511-1874500 11G07_rep_B_Azacytidine-5a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113335511-1874500 11G07_rep_B_Azacytidine-5a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E16_id_MSn_negative.mzML at line 21
index 321 is out of bounds for axis 0 with size 321
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/317.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_A3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152538967-1576959 Batch1_HCC1143_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD5_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_159.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1454.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1454.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/168_130.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112715684-1874206 11B01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112715684-1874206 11B01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GE10_01_11694.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152728494-1868279 06D10_rep_A_Carbimazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152728494-1868279 06D10_rep_A_Carbimazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dut_P3G3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (dut_P3G3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7H05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/532-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G15_id_MSn_positive.mzML at line 21
index 675 is out of bounds for axis 0 with size 675
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS307Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151952087-1867925 05F03_rep_C_Debrisoquin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151952087-1867925 05F03_rep_C_Debrisoquin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123252541-1876022 08H09_rep_B_Dexfenfluramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123252541-1876022 08H09_rep_B_Dexfenfluramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/771.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114004767-1922740 3_D2_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114004767-1922740 3_D2_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_9_2022_1003_Michael_leming_liver_neg-0.0027.mzML at line 689
Premature end of data in tag binary line 26120, line 26120, column 1437018 (1_9_2022_1003_Michael_leming_liver_neg-0.0027.mzML, line 26120)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122002681-1879724 15B10_rep_B_Phentermine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122002681-1879724 15B10_rep_B_Phentermine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123950501-1876357 08C06_rep_D_Voriconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123950501-1876357 08C06_rep_D_Voriconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130358602-1877440 13B03_rep_B_THIP_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130358602-1877440 13B03_rep_B_THIP_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152218631-1576798 Batch2_VMCUB1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152627594-1868232 06G07_rep_A_Efavirenza.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152627594-1868232 06G07_rep_A_Efavirenza.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091609/raw/GNPS Workshop Dataset/1110222_R2A_843A_DDA2.mzXML at line 689
error parsing attribute name, line 23282, column 10 (1110222_R2A_843A_DDA2.mzXML, line 23282)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc035_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc035_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G13_id_MSn_negative.mzML at line 21
index 357 is out of bounds for axis 0 with size 357
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0016_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123328383-1876051 08G08_rep_B_Folic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123328383-1876051 08G08_rep_B_Folic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/91.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_SERUM_V3_SSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH50.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/citF_P4H10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (citF_P4H10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlB2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlB2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150630065-1924509 2_B10_RGT2_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150630065-1924509 2_B10_RGT2_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152716256-1577040 Batch2_RERFLCSQ1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151201852-1924795 3_F9_SNF3_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151201852-1924795 3_F9_SNF3_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_blank_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170207_046EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e0/c755f1e30ecfce5fb91b323b34c81b/input_file/MMW5_20170207_046EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201807198-1882080 16C04_rep_C_1,8-Dihydroxyanthraquinoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201807198-1882080 16C04_rep_C_1,8-Dihydroxyanthraquinoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111434597-1871490 10F08_rep_B_Alexidine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111434597-1871490 10F08_rep_B_Alexidine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201451456-1877936 09E09_rep_C_Estropipatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201451456-1877936 09E09_rep_C_Estropipatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Pseudomonas_aeruginosa_PAnmFLR01_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124418562-1862355 03C04_rep_A_Pargyline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124418562-1862355 03C04_rep_A_Pargyline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124557524-1876649 09H10_rep_A_Cephalothin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124557524-1876649 09H10_rep_A_Cephalothin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153326492-1577341 Batch4_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092404857-1878812 14C10_rep_A_Mesalaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092404857-1878812 14C10_rep_A_Mesalaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P22_id_MSn_positive.mzML at line 21
index 698 is out of bounds for axis 0 with size 698
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151237673-1576322 Batch5_NCIH1755_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150724217-1864938 02E05_rep_C_Tioconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150724217-1864938 02E05_rep_C_Tioconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-051_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD5_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAI01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009379_IBD200_E2_B10.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/eamB_P4G10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (eamB_P4G10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080620.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111513027-1921099 1_F9_GAP1_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111513027-1921099 1_F9_GAP1_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152744083-1868291 06F06_rep_A_Mebhydroline_1,5-naphtalenedisulfonateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152744083-1868291 06F06_rep_A_Mebhydroline_1,5-naphtalenedisulfonateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/msrB_P3H6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (msrB_P3H6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151514385-1924960 4_H11_SNF3_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151514385-1924960 4_H11_SNF3_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/128-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/110.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123955618-1876361 08F06_rep_D_(-)-Emtricitabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123955618-1876361 08F06_rep_D_(-)-Emtricitabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210325_AD_10.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201619282-1877999 09A01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201619282-1877999 09A01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125513665-1877038 12F11_rep_D_Allopurinolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125513665-1877038 12F11_rep_D_Allopurinolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hB3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hB3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample155_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153036429-1868422 06E07_rep_B_Carteolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153036429-1868422 06E07_rep_B_Carteolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD2_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V3_EDTAk2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152834784-1577106 Batch5_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD2_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I22_id_negative.mzML at line 21
index 256 is out of bounds for axis 0 with size 256
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L60cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L60cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yrbG_P4G11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (yrbG_P4G11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD5_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N11_id_negative.mzML at line 21
index 238 is out of bounds for axis 0 with size 238
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl 1RS_P3A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024958 (ctrl 1RS_P3A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112104783-1921786 2_B5_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112104783-1921786 2_B5_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115001503-1875250 12A04_rep_B_Digoxigenina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115001503-1875250 12A04_rep_B_Digoxigenina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090443/raw/raw/plate1_2x/wash/wash_GA1_01_51109.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092748697-1878986 14D09_rep_B_Benzylpenicillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092748697-1878986 14D09_rep_B_Benzylpenicillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltS_#1_P6B1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (gltS_#1_P6B1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_D12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_D12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152208113-1868034 05G06_rep_D_Mitoxantrone_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152208113-1868034 05G06_rep_D_Mitoxantrone_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130519287-1877503 13F02_rep_C_Flucloxacillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130519287-1877503 13F02_rep_C_Flucloxacillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/accB_P5E4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (accB_P5E4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114726286-1875125 12B08_rep_B_Pipemidic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114726286-1875125 12B08_rep_B_Pipemidic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223805331-1870294 01A06_rep_C_Atracurium besylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223805331-1870294 01A06_rep_C_Atracurium besylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082709/ccms_peak/ST000669/EX00485-lipidomics/Raw data/NEG/20150925_TP_Subretinal.mzXML at line 689
Extra content at the end of the document, line 48269, column 1 (20150925_TP_Subretinal.mzXML, line 48269)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaP_P4F10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (waaP_P4F10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111341459-1871449 10C05_rep_B_Flunixin_megluminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111341459-1871449 10C05_rep_B_Flunixin_megluminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223558736-1870197 01G01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223558736-1870197 01G01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_127.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153614816-1868688 06B01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153614816-1868688 06B01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112039541-1921764 2_D2_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112039541-1921764 2_D2_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/450.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-cc1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153639278-1577499 Batch4_SW780_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121906913-1879682 15A07_rep_B_Clavulanate_potassium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121906913-1879682 15A07_rep_B_Clavulanate_potassium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124333359-1862319 03B08_rep_A_Sulfamethoxazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124333359-1862319 03B08_rep_A_Sulfamethoxazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007575_031718-5CRP4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B24_id.mzML at line 21
index 517 is out of bounds for axis 0 with size 517
Error processing file: /data/datasets/server/MassIVE/MSV000078960/ccms_peak/blank-Pmix_SPL-GT47-12+11+10_RA1_01_19803.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222817428-1869848 01G06_rep_A_Diphenhydramine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222817428-1869848 01G06_rep_A_Diphenhydramine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR331_5h2a.mzML at line 689
Opening and ending tag mismatch: binary line 131266 and scanWindow, line 131266, column 2463 (pBlateR331_5h2a.mzML, line 131266)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_49.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tdcG_P4B2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (tdcG_P4B2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145939235-1864099 02D02_rep_B_Naloxone hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145939235-1864099 02D02_rep_B_Naloxone hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224307675-1870528 01F04_rep_D_Triflupromazine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224307675-1870528 01F04_rep_D_Triflupromazine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gmd_#2_P5F8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (gmd_#2_P5F8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122257458-1879857 15D10_rep_C_Anthralinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122257458-1879857 15D10_rep_C_Anthralinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125532303-1863011 03B06_rep_D_Aceclofenacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125532303-1863011 03B06_rep_D_Aceclofenacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101909926-1869684 07F01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101909926-1869684 07F01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083989/updates/2019-07-18_Tongchai_9989dd7a/raw/180323_PMA_TS_BM_S_03_B_neg.mzXML at line 689
Extra content at the end of the document, line 76802, column 1 (180323_PMA_TS_BM_S_03_B_neg.mzXML, line 76802)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person09_plasma_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person09_plasma_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ6_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I9_id_MSn_positive.mzML at line 21
index 703 is out of bounds for axis 0 with size 703
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/ppi_yhdE_P5H1_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024912 (ppi_yhdE_P5H1_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ddlB_P3A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (ddlB_P3A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096497/peak/20200912_ProgressCurveAnalysis_Eda_set4_eff3_t6_rep2.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000096497/peak/20200912_ProgressCurveAnalysis_Eda_set4_eff3_t6_rep2.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H13_id_MSn_negative.mzML at line 21
index 312 is out of bounds for axis 0 with size 312
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122755804-1875787 08G08_rep_A_Folic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122755804-1875787 08G08_rep_A_Folic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D1_preFOS_1_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100912636-1869206 07C06_rep_A_Metaproterenol_sulfate,_orciprenaline_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100912636-1869206 07C06_rep_A_Metaproterenol_sulfate,_orciprenaline_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130010049-1877266 13E11_rep_A_Lodoxamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130010049-1877266 13E11_rep_A_Lodoxamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165844876-2227550 Healthy8.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223310615-1870068 01H02_rep_B_Todralazine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223310615-1870068 01H02_rep_B_Todralazine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M5_id_MSn_positive.mzML at line 21
index 670 is out of bounds for axis 0 with size 670
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F3_id_MSn_negative.mzML at line 21
index 335 is out of bounds for axis 0 with size 335
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/479.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_66.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202315718-1878321 10E07_rep_A_Tinidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202315718-1878321 10E07_rep_A_Tinidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_72.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_C5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/975.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H18_id.mzML at line 21
index 567 is out of bounds for axis 0 with size 567
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_08_leg_skin_control_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_08_leg_skin_control_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GD12_01_16829.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ccmE_#2_P5B6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ccmE_#2_P5B6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/639.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD2_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151819012-1867851 05C11_rep_C_Clozapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151819012-1867851 05C11_rep_C_Clozapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202319549-1878324 10F11_rep_A_Cinoxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202319549-1878324 10F11_rep_A_Cinoxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/272.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080030/ccms_peak/Forensic_study_80_volunteers/Forensic_Hands_mzXML/Forensic_Hands_plate_6_mzXML/.DS_Store at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153851507-1577610 Batch6_NCIH1299_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_15102101_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_59_RIN_52.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_59_RIN_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kefB_P4C8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (kefB_P4C8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_A5M_pos_IMS1_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4D03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113659558-1874626 11D08_rep_C_Carbenoxolone_disodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113659558-1874626 11D08_rep_C_Carbenoxolone_disodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case199_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case199_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G8_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD2_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B6_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3E01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/429.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190118_ES_H3K_batch14_repB_206.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151117298-1924757 3_B10_SNF3_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151117298-1924757 3_B10_SNF3_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201607136-1877990 09A03_rep_C_Gefitiniba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201607136-1877990 09A03_rep_C_Gefitiniba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_E12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_C10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132949697-1733923 1fb Skin 2 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165702160-2227456 Healthy1.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222728980-1869811 01C10_rep_A_Antipyrinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222728980-1869811 01C10_rep_A_Antipyrinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224037631-1870411 01G09_rep_D_Isoxsuprine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224037631-1870411 01G09_rep_D_Isoxsuprine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153231346-1577296 Batch4_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/can_P3E6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (can_P3E6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151832912-1576617 Batch7_RXF393_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_054ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/d8/adbf67bca7a06f3f7ac53bb873ca20/input_file/QC_20170127_054ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123225803-1876001 08G02_rep_B_Mizolastineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123225803-1876001 08G02_rep_B_Mizolastineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122533835-1879977 15F06_rep_C_Losartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122533835-1879977 15F06_rep_C_Losartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH12.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202438231-1878386 10A04_rep_A_Phenethicillin_potassium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202438231-1878386 10A04_rep_A_Phenethicillin_potassium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_C10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GE8_01_16839.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ4_4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD6_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007700_032218-5CRP4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_71_RIN_50.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_71_RIN_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIAJ10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111947753-1921720 2_D9_GAP1_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111947753-1921720 2_D9_GAP1_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111735726-1921607 1_C10_GAP1_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111735726-1921607 1_C10_GAP1_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151128034-1865128 02H09_rep_D_Neomycin sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151128034-1865128 02H09_rep_D_Neomycin sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201205119-1881810 16E04_rep_B_Clopidogrelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201205119-1881810 16E04_rep_B_Clopidogrelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_15102011_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152807751-1577083 Batch3_SKLU1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224028495-1870404 01H04_rep_D_Sulindacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224028495-1870404 01H04_rep_D_Sulindacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/448.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_191.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223801470-1870291 01A05_rep_C_Metformin hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223801470-1870291 01A05_rep_C_Metformin hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gmhB_P3G3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (gmhB_P3G3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_72.mzXML at line 689
Premature end of data in tag peaks line 18620, line 18624, column 3654 (20121114_72.mzXML, line 18624)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR33h3a.mzML at line 689
Opening and ending tag mismatch: binary line 219850 and spectrum, line 219850, column 8719 (pBpumR33h3a.mzML, line 219850)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152741572-1577061 Batch1_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1074.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_26_CNR_54.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_26_CNR_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_G11_id_negative.mzML at line 21
index 191 is out of bounds for axis 0 with size 191
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_07_NOR_51.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_07_NOR_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_E8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152230814-1868051 05C07_rep_D_Maprotiline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152230814-1868051 05C07_rep_D_Maprotiline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200924562-1877697 09C01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200924562-1877697 09C01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150659825-1864919 02F03_rep_C_Loxapine succinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150659825-1864919 02F03_rep_C_Loxapine succinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1C07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2L003C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150743092-1864953 02A04_rep_C_Edrophonium chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150743092-1864953 02A04_rep_C_Edrophonium chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1454.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1454.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_G6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_93.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_83.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180702_ES_H3K_batch9_repB_133.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152317939-1868087 05G03_rep_D_Betaxolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152317939-1868087 05G03_rep_D_Betaxolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092914842-1879054 14F07_rep_C_Estriola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092914842-1879054 14F07_rep_C_Estriola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153111428-1577232 Batch3_SU8686_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_C9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153156212-1577268 Batch4_DMS114_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/857.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123243540-1876015 08G07_rep_B_Racecadotrilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123243540-1876015 08G07_rep_B_Racecadotrilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike5_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F22_id_MSn_positive.mzML at line 21
index 670 is out of bounds for axis 0 with size 670
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122951933-1867676 05C04_rep_B_Desipramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122951933-1867676 05C04_rep_B_Desipramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD3_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person24_blood_elder_POS.mzXML at line 689
attributes construct error, line 41, column 83 (Person24_blood_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224103873-1870431 01H06_rep_D_Adiphenine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224103873-1870431 01H06_rep_D_Adiphenine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153113917-1577234 Batch3_SKMES1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/191-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_C4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150717771-1864933 02H04_rep_C_Didanosineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150717771-1864933 02H04_rep_C_Didanosineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/282.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210328_AD_45.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G3_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_high (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151555441-1924990 4_E9_SNF3_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151555441-1924990 4_E9_SNF3_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113319276-1874487 11D08_rep_B_Carbenoxolone_disodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113319276-1874487 11D08_rep_B_Carbenoxolone_disodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2A01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-014_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122131023-1867273 04C08_rep_D_Clotrimazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122131023-1867273 04C08_rep_D_Clotrimazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153315451-1577332 Batch4_SW780_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNS335_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124428676-1862363 03E04_rep_A_Flufenamic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124428676-1862363 03E04_rep_A_Flufenamic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/adiA_P3C10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (adiA_P3C10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_59_NOR_40.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_59_NOR_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125913862-1863194 04H10_rep_A_Clofilium_tosylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125913862-1863194 04H10_rep_A_Clofilium_tosylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153339458-1868565 06B09_rep_B_Biotinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153339458-1868565 06B09_rep_B_Biotinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7F06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_80.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153415263-1868593 06E05_rep_B_Oxcarbazepineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153415263-1868593 06E05_rep_B_Oxcarbazepineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_63_AC+_47.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152445381-1868153 05G01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152445381-1868153 05G01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170125_049EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/85/2a328f28fecccc5eabe6c6ea35151b/input_file/MMW4_20170125_049EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/QC_9_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_E1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample060_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125956489-1877256 13G01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125956489-1877256 13G01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_C2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_F4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007657_032118-1Thr3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/puuE_P3B2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (puuE_P3B2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate1/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yjhH_P3A12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (yjhH_P3A12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mpl_#1_P4B6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (mpl_#1_P4B6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD3_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201138794-1877795 09H08_rep_B_Finasterideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201138794-1877795 09H08_rep_B_Finasterideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113209771-1922326 1_D5_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113209771-1922326 1_D5_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153507468-1577423 Batch4_SW1573_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123943050-1876351 08C05_rep_D_Yohimbine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123943050-1876351 08C05_rep_D_Yohimbine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201002828-1881719 16B02_rep_B_Ipriflavonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201002828-1881719 16B02_rep_B_Ipriflavonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121717052-1879599 15G02_rep_A_Gatifloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121717052-1879599 15G02_rep_A_Gatifloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J9_id.mzML at line 21
index 562 is out of bounds for axis 0 with size 562
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007612_032118-Unst2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_qc_high (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_470_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112714470-1874205 11G11_rep_A_Luteolinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112714470-1874205 11G11_rep_A_Luteolinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165912494-2227576 PAT39.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/025_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N18.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/007_1029_3_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control102_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control102_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/BAT_raw files/Lumos_ISAS_BAT_UNLABELED_2.mzML at line 689
Premature end of data in tag spectrumList line 92, line 27987, column 1 (Lumos_ISAS_BAT_UNLABELED_2.mzML, line 27987)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114008814-1874778 11B10_rep_D_Moxalactam_disodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114008814-1874778 11B10_rep_D_Moxalactam_disodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201643426-1878017 09G02_rep_C_Trihexyphenidyl-D,L_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201643426-1878017 09G02_rep_C_Trihexyphenidyl-D,L_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151454771-1924944 4_F8_SNF3_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151454771-1924944 4_F8_SNF3_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD2_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083774/ccms_peak/Lipidomics/Neg_75.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N18_id_MSn_positive.mzML at line 21
index 552 is out of bounds for axis 0 with size 552
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/002_CRa_H9M5_M470_Pool_01_low_pos.mzXML at line 689
Premature end of data in tag peaks line 11135, line 11139, column 15865 (002_CRa_H9M5_M470_Pool_01_low_pos.mzXML, line 11139)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124708935-1876705 09E08_rep_A_Tramadol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124708935-1876705 09E08_rep_A_Tramadol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B22_id_MSn_negative.mzML at line 21
index 279 is out of bounds for axis 0 with size 279
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122505614-1879955 15E07_rep_C_Sparfloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122505614-1879955 15E07_rep_C_Sparfloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152217359-1576797 Batch2_NCIH2170_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223713428-2227595 burnin.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085180/peak/CUA874-6.mzXML at line 689
Invalid character: Char 0x0 out of allowed range
, line 12364, column 156856 (CUA874-6.mzXML, line 12364)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112259020-1921885 3_C9_GPR1_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112259020-1921885 3_C9_GPR1_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K18_id_MSn_negative.mzML at line 21
index 317 is out of bounds for axis 0 with size 317
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152747464-1577066 Batch1_HCC15_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153120126-1577239 Batch3_NCIH460DNP53_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A21_id.mzML at line 21
index 606 is out of bounds for axis 0 with size 606
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125649021-1877111 13H07_rep_A_Alcuronium_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125649021-1877111 13H07_rep_A_Alcuronium_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD6_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121910745-1867161 04A04_rep_C_Bufexamacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121910745-1867161 04A04_rep_C_Bufexamacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152735513-1577056 Batch2_IGROV1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Column2_test_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009605_IBD200_E16_B4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GC8_01_11488.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pstA_#2_P4C4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (pstA_#2_P4C4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201741159-1882060 16A04_rep_C_Trimebutineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201741159-1882060 16A04_rep_C_Trimebutineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D15_id_MSn_positive.mzML at line 21
index 688 is out of bounds for axis 0 with size 688
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113125274-1874396 11B04_rep_B_Bucladesine_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113125274-1874396 11B04_rep_B_Bucladesine_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C2_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114303047-1874919 12D04_rep_A_2-Aminobenzenesulfonamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114303047-1874919 12D04_rep_A_2-Aminobenzenesulfonamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122125527-1879787 15G08_rep_B_Docetaxelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122125527-1879787 15G08_rep_B_Docetaxelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/32_D25062013T0257_1399CBU_0009_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125154899-1876886 12E09_rep_C_Nilutamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125154899-1876886 12E09_rep_C_Nilutamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150005272-1864120 02D01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150005272-1864120 02D01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112542591-1874132 11D11_rep_A_Ethopropazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112542591-1874132 11D11_rep_A_Ethopropazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088054/ccms_peak/Cohort_2/Cohort_2_Plate_76_72.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgpB_#4_P5G6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (pgpB_#4_P5G6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101934534-1869704 07F11_rep_D_Clorsulonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101934534-1869704 07F11_rep_D_Clorsulonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152758270-1577075 Batch2_PC3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009651_IBD200_E19_B2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113459140-1874530 11H05_rep_C_Theobrominea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113459140-1874530 11H05_rep_C_Theobrominea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125434852-1877008 12E05_rep_D_Rolipramb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125434852-1877008 12E05_rep_D_Rolipramb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/idnD_#1_P4B7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (idnD_#1_P4B7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_M8_id_MSn_negative.mzML at line 21
index 342 is out of bounds for axis 0 with size 342
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101029610-1869267 07E09_rep_B_Triflusala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101029610-1869267 07E09_rep_B_Triflusala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089255/raw/SCFM2_blank_noTri_rep3_P1-A-4_01_8062.mzXML at line 689
Specification mandates value for attribute prPRM1ZG8mIAQ9GzwUYFSABD0rNcRevgAEPXdMtGmt4AQ9qeHUcKNABD2x6lRfNIAEPbq19GBwwAQ9y9I0YdlABD4Zt7RgjgAEPsc1hGatQAQ, line 33507, column 123 (SCFM2_blank_noTri_rep3_P1-A-4_01_8062.mzXML, line 33507)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190128_ES_H3K_batch15_repB_223.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case217_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case217_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150252642-1864729 02H01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150252642-1864729 02H01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122254876-1879855 15H10_rep_C_Acetylsalicylic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122254876-1879855 15H10_rep_C_Acetylsalicylic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094792/raw/raw_files/Corallium.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087805/ccms_peak/Media_R4_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112414960-1921952 3_H10_GPR1_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112414960-1921952 3_H10_GPR1_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pbpG_P3C9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (pbpG_P3C9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092109977-1878675 14C04_rep_A_Naftifine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092109977-1878675 14C04_rep_A_Naftifine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_110.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GE2_01_11512.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220222_LKM_Celegans_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101114687-1869303 07C07_rep_B_Sisomicin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101114687-1869303 07C07_rep_B_Sisomicin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_B5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_60.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cmtB_#2_P5F1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (cmtB_#2_P5F1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200731546-1881608 16C02_rep_A_(R)-Duloxetine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200731546-1881608 16C02_rep_A_(R)-Duloxetine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201031462-1881740 16H01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201031462-1881740 16H01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122446427-1879940 15E03_rep_C_Cyclophosphamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122446427-1879940 15E03_rep_C_Cyclophosphamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A16_id.mzML at line 21
index 565 is out of bounds for axis 0 with size 565
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B1_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153924816-1577638 Batch6_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165851240-2227556 PAT43.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A8_id.mzML at line 21
index 563 is out of bounds for axis 0 with size 563
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152508968-1576934 Batch2_OVCAR4_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_N21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD6_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150517536-1924447 1_C11_RGT2_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150517536-1924447 1_C11_RGT2_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_C7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122015499-1879734 15A02_rep_B_Buspirone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122015499-1879734 15A02_rep_B_Buspirone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153950834-1577660 Batch7_UO31_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/10.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fau_P3G12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (fau_P3G12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_19073146_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075195.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C9_id_MSn_negative.mzML at line 21
index 308 is out of bounds for axis 0 with size 308
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153509776-1577425 Batch4_NCIH1563_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_C6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/672.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K22_id_MSn_positive.mzML at line 21
index 539 is out of bounds for axis 0 with size 539
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dsdA_#1_P5F9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (dsdA_#1_P5F9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150710505-1924544 2_E7_RGT2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150710505-1924544 2_E7_RGT2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092517322-1878869 14E05_rep_B_Levalbuterol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092517322-1878869 14E05_rep_B_Levalbuterol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S25_0126_190128195948.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_B3_id_MSn_negative.mzML at line 21
index 269 is out of bounds for axis 0 with size 269
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151823387-1576609 Batch7_UACC257_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tyrB_#2_P5D2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (tyrB_#2_P5D2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092505940-1878860 14B08_rep_B_Oxprenolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092505940-1878860 14B08_rep_B_Oxprenolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007496_031618-Unst4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7E02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180904_ES_H3K_batch1_repD_6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_26.mzXML at line 689
Premature end of data in tag msRun line 5, line 20445, column 1 (20121114_26.mzXML, line 20445)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GE3_01_11978.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_sample03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112845281-1874277 11F03_rep_A_Nylidrinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112845281-1874277 11F03_rep_A_Nylidrinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153855036-1577613 Batch6_NCIH1299_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086940/raw/POS-qc-target1-20v.mzXML at line 689
Specification mandates value for attribute compressionTyQ7DrKEN18qVDkkmIQ3YCBEORALRDdgzqQ0cYYkN2GqRDNfvOQ3YiikQD2UlDdtFMQwA, line 3114, column 94 (POS-qc-target1-20v.mzXML, line 3114)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp2/20180309173111202-1989059 wound 5da.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/386.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ulaE_#1_P4H6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (ulaE_#1_P4H6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_sample09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223824990-2227657 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190111_ES_H3K_batch12_repC_182.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124543102-1862421 03D04_rep_B_Oxolinic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124543102-1862421 03D04_rep_B_Oxolinic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw5_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111717544-1871615 10C07_rep_B_Glycopyrrolatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111717544-1871615 10C07_rep_B_Glycopyrrolatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151959302-1576688 Batch1_NCIH2073_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151948925-1576680 Batch1_HCC1806_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095328/peak/MS_RAW_data/230811_BBT301_control_TPP_HighPH_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GF9_01_17214.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pyrG_#1_P5B6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (pyrG_#1_P5B6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bioH_#1_P4C9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (bioH_#1_P4C9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100812250-1869158 07A01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100812250-1869158 07A01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hycD_P3B12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (hycD_P3B12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200637770-1881568 16C10_rep_A_Ethoxzolamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200637770-1881568 16C10_rep_A_Ethoxzolamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G17_id_MSn_positive.mzML at line 21
index 633 is out of bounds for axis 0 with size 633
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111817443-1921643 2_G3_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111817443-1921643 2_G3_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092133182-1878693 14H06_rep_A_Ronidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092133182-1878693 14H06_rep_A_Ronidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1559.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1559.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A5_id_MSn_positive.mzML at line 21
index 689 is out of bounds for axis 0 with size 689
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200825184-1881647 16C07_rep_A_Avobenzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200825184-1881647 16C07_rep_A_Avobenzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8B04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/spoT_P4E6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (spoT_P4E6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1F02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112109384-1921790 2_E10_GAP1_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112109384-1921790 2_E10_GAP1_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113440061-1922457 2_A8_IZH2_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113440061-1922457 2_A8_IZH2_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tesA_P3H3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (tesA_P3H3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/587.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101150118-1869331 07A05_rep_B_Benperidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101150118-1869331 07A05_rep_B_Benperidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_65.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Pool_1_B-A2_1_5500.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121616232-1879552 15A08_rep_A_Valproic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121616232-1879552 15A08_rep_A_Valproic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_G3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1124.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125123724-1876863 12F11_rep_C_Allopurinola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125123724-1876863 12F11_rep_C_Allopurinola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cirA_P3E4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024914 (cirA_P3E4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170209_039ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/db/8d93f90768ee74d0f8c08c52abc640/input_file/SH10_20170209_039ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122521110-1879967 15B07_rep_C_Caffeineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122521110-1879967 15B07_rep_C_Caffeineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102112325-1869784 07A01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102112325-1869784 07A01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114501771-1875016 12B03_rep_A_Flubendazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114501771-1875016 12B03_rep_A_Flubendazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4E03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nanA_#2_P4G7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (nanA_#2_P4G7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control168_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control168_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075695.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111651945-1871595 10D05_rep_B_Fenoprofen_calcium_salt_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111651945-1871595 10D05_rep_B_Fenoprofen_calcium_salt_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152014164-1867943 05A05_rep_C_Phenylpropanolamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152014164-1867943 05A05_rep_C_Phenylpropanolamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122052106-1879762 15F07_rep_B_Benztropine_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122052106-1879762 15F07_rep_B_Benztropine_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample045_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095819/raw/202312_214_PA08_10ppb_1uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113234398-1922347 1_G7_IZH2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113234398-1922347 1_G7_IZH2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/371.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145728703-1863994 02B08_rep_A_Disulfiramb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145728703-1863994 02B08_rep_A_Disulfiramb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/649.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/95.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M8_id_MSn_positive.mzML at line 21
index 652 is out of bounds for axis 0 with size 652
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_71_RIN_50.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_71_RIN_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153606824-1577472 Batch4_NCIH2342_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_88.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_88.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210119_LKM_yeast_nBut_20to1_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113810692-1922639 3_H8_STE2_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113810692-1922639 3_H8_STE2_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114351826-1922942 4_F2_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114351826-1922942 4_F2_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125424130-1877000 12H09_rep_D_Urosiolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125424130-1877000 12H09_rep_D_Urosiolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153352512-1868575 06B08_rep_B_Lamivudineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153352512-1868575 06B08_rep_B_Lamivudineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yjfF_#3_P4G9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (yjfF_#3_P4G9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET137.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET137.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR124h2a.mzML at line 689
Opening and ending tag mismatch: spectrum line 263792 and binary, line 263795, column 824 (pBpumR124h2a.mzML, line 263795)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample157.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114413892-1874977 12E05_rep_A_Rolipramb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114413892-1874977 12E05_rep_A_Rolipramb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/old/MC_MS_MS Neg 1_2_3_4 Reps/MC_MS_MS Neg 1_2_3_4 Reps/DataMS_Neg_1_2_3_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/old/MC_MS_MS Neg 1_2_3_4 Reps/MC_MS_MS Neg 1_2_3_4 Reps/DataMS_Neg_1_2_3_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample26n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_62.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223451130-1870145 01C04_rep_B_Sulfadiazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223451130-1870145 01C04_rep_B_Sulfadiazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gshB_P4D9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (gshB_P4D9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8C06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223957477-2227737 Healthy6.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165852283-2227557 PAT37.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145712835-1863981 02B01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145712835-1863981 02B01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_90.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202213774-1882273 16C09_rep_D_Actarita.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202213774-1882273 16C09_rep_D_Actarita.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7A01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_C8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202206352-1878266 10H02_rep_A_(R)_-Naproxen_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202206352-1878266 10H02_rep_A_(R)_-Naproxen_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210324_AD_95.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/CORN_AAD5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223713942-1870254 01F07_rep_C_Sulpirideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223713942-1870254 01F07_rep_C_Sulpirideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122308496-1867351 04F08_rep_D_Benzydamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122308496-1867351 04F08_rep_D_Benzydamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/citG_#1_P4G5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (citG_#1_P4G5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130006278-1863238 04A06_rep_A_Dropropizine_(R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130006278-1863238 04A06_rep_A_Dropropizine_(R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201210645-1881814 16D05_rep_B_Perospironeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201210645-1881814 16D05_rep_B_Perospironeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/148-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/170-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093234418-1879208 14A05_rep_C_Prednicarbatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093234418-1879208 14A05_rep_C_Prednicarbatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_E8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_054EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ea/d5a76bcd6f7fd21c365058f9849eb0/input_file/QC_20170209_054EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201215_LKM_NoBeads_MeOH_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080705/ccms_peak/RAW/24h_lysC_BA-re.mzML at line 648
Multiple activations for a single precursor is not yet implemented. 
                                                         File: input_file/24h_lysC_BA-re.mzML 
                                                         Scan: 703
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acpP_#3_P4E2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (acpP_#3_P4E2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153457524-1577415 Batch4_NCIH2342_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Blank_3_B-A1_1_5633.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hC3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hC3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6A09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/689.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152355225-1868115 05F03_rep_D_Debrisoquin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152355225-1868115 05F03_rep_D_Debrisoquin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152053604-1576731 Batch1_NCIH1975_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125022245-1876818 12E02_rep_C_Nizatidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125022245-1876818 12E02_rep_C_Nizatidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_17091608_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N15_id_MSn_negative.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114036723-1922768 3_C4_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114036723-1922768 3_C4_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111933809-1921708 2_D10_GAP1_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111933809-1921708 2_D10_GAP1_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114321225-1922915 4_A8_STE2_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114321225-1922915 4_A8_STE2_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F12_id_MSn_negative.mzML at line 21
index 315 is out of bounds for axis 0 with size 315
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124956965-1876799 12G02_rep_C_Pentetic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124956965-1876799 12G02_rep_C_Pentetic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121005709-1879275 14C07_rep_D_Methantheline_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121005709-1879275 14C07_rep_D_Methantheline_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_54_CNR_25.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_54_CNR_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224352657-1870564 01A09_rep_D_Amprolium hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224352657-1870564 01A09_rep_D_Amprolium hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30258 - GI-19-150.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_95.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124434877-1862368 03E07_rep_A_Meclofenamic_acid_sodium_salt_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124434877-1862368 03E07_rep_A_Meclofenamic_acid_sodium_salt_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_DPKS_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_154.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD4_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GB5_01_17152.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/142-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_21.mzXML at line 689
Premature end of data in tag peaks line 19232, line 19236, column 15939 (20121114_21.mzXML, line 19236)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rffH_#1_P6C8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (rffH_#1_P6C8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007556_031618-1CRP4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223554889-1870194 01F09_rep_C_Oxethazaineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223554889-1870194 01F09_rep_C_Oxethazaineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_F2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5A04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180913_ES_H3K_batch2_repB_23.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample116_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_133_1B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000096669/ccms_peak/3_36_40x_2022_1006_Michael_pos-0.0062.mzML at line 689
Premature end of data in tag binary line 957, line 957, column 168913 (3_36_40x_2022_1006_Michael_pos-0.0062.mzML, line 957)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151031306-1924717 3_B4_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151031306-1924717 3_B4_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1F001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152251272-1576824 Batch2_NCIH2444_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-025_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150455515-1864823 02G07_rep_C_Tamoxifen citrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150455515-1864823 02G07_rep_C_Tamoxifen citrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_78.mzXML at line 689
Premature end of data in tag peaks line 19436, line 19440, column 3651 (20121114_78.mzXML, line 19440)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rbsB_P3C8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (rbsB_P3C8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-PDAC40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/460.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR27_5h2a.mzML at line 689
Specification mandates value for attribute co, line 274890, column 36 (pMIBSDR27_5h2a.mzML, line 274890)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2C04Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_52.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_52.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thrC_#3_P4F8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (thrC_#3_P4F8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000096940/peak/15_Human fecal community screening for EGT metabolism_targeted_HF17_EGT-d9 quantification_1.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28022021_Batch02_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152808895-1868310 06H08_rep_A_Progesteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152808895-1868310 06H08_rep_A_Progesteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_188.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090268/ccms_peak/Microbial Reference Database/Salinispora_MSV000078836/Y231-3-Bu.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000090268/ccms_peak/Microbial Reference Database/Salinispora_MSV000078836/Y231-3-Bu.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000080030/ccms_peak/Forensic_study_80_volunteers/Forensic_Hands_mzXML/Forensic_Hands_plate_5_mzXML/.DS_Store at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130110395-1863290 04D11_rep_A_Quinidine_hydrochloride_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130110395-1863290 04D11_rep_A_Quinidine_hydrochloride_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121505696-1866969 04D04_rep_B_Cortisoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121505696-1866969 04D04_rep_B_Cortisoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_E6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LEA2_50EV_RA2_01_22558.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glxK_P4H10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (glxK_P4H10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_58.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNH189_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_LB_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person05_RBC_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Person05_RBC_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125527154-1877048 12D11_rep_D_L(-)-vesamicol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125527154-1877048 12D11_rep_D_L(-)-vesamicol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M8_id_MSn_positive.mzML at line 21
index 376 is out of bounds for axis 0 with size 376
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A7_id_MSn_positive.mzML at line 21
index 674 is out of bounds for axis 0 with size 674
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/panE_P3G9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (panE_P3G9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_A5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_62.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153701954-1577518 Batch5_A704_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112813500-1874252 11B08_rep_A_Deflazacorta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112813500-1874252 11B08_rep_A_Deflazacorta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1324.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1324.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2A07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210108_AD_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152827815-1577100 Batch5_HOP92_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G16_id_negative.mzML at line 21
index 261 is out of bounds for axis 0 with size 261
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190123_ES_H3K_batch15_repB_125.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/651.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/156-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124156476-1876457 08B07_rep_D_Acetopromazine_maleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124156476-1876457 08B07_rep_D_Acetopromazine_maleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170125_062EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/25/db7d735a7f7f11306533f2bc475ee8/input_file/SH10_20170125_062EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N20_id.mzML at line 21
index 573 is out of bounds for axis 0 with size 573
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121433382-1866944 04F09_rep_B_Fipexide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121433382-1866944 04F09_rep_B_Fipexide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122556475-1867487 05E09_rep_A_Bepridil_hydrochloride_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122556475-1867487 05E09_rep_A_Bepridil_hydrochloride_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122732897-1867565 05B03_rep_A_Practololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122732897-1867565 05B03_rep_A_Practololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_G8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E11_id_MSn_positive.mzML at line 21
index 383 is out of bounds for axis 0 with size 383
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_107.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009412_20190702122015_IBD200_E4_A11.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/935-A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrdE_P4F8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (nrdE_P4F8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101105795-1869296 07A10_rep_B_Ceftazidime_pentahydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101105795-1869296 07A10_rep_B_Ceftazidime_pentahydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B16_id_MSn_negative.mzML at line 21
index 278 is out of bounds for axis 0 with size 278
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201738547-1882058 16D10_rep_C_Dofetilideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201738547-1882058 16D10_rep_C_Dofetilideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153843187-1577603 Batch6_NCIH526_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample109_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082735/ccms_peak/ST000664/EX00347-lipidomics/Raw data/POS/BATCH3/20150406_Test.mzXML at line 689
Extra content at the end of the document, line 66968, column 1 (20150406_Test.mzXML, line 66968)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201428216-1877919 09C01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201428216-1877919 09C01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_SERUM_V7_CAT.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122114265-1867259 04H07_rep_C_Glibenclamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122114265-1867259 04H07_rep_C_Glibenclamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C1_id_negative.mzML at line 21
index 257 is out of bounds for axis 0 with size 257
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125940930-1863217 04B02_rep_A_Chlorothiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125940930-1863217 04B02_rep_A_Chlorothiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_58.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201319807-1881866 16A10_rep_B_Ubenimexb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201319807-1881866 16A10_rep_B_Ubenimexb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152659531-1577026 Batch1_NCIH1395_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092222140-1878732 14A10_rep_A_Oxyphenbutazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092222140-1878732 14A10_rep_A_Oxyphenbutazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093591/peak/CMB-STF154.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124148980-1876451 08E04_rep_D_Zafirlukastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124148980-1876451 08E04_rep_D_Zafirlukastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_34_male_2022_1017_Michael_neg-0.0060.mzML at line 689
Premature end of data in tag binary line 25089, line 25089, column 2721803 (4_34_male_2022_1017_Michael_neg-0.0060.mzML, line 25089)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_5_B_rep_4_B-E1_1_5672.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E9_id_MSn_negative.mzML at line 21
index 346 is out of bounds for axis 0 with size 346
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_86.mzXML at line 689
Premature end of data in tag peaks line 31183, line 31187, column 15939 (20121114_86.mzXML, line 31187)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/iscS_#1_P4F6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (iscS_#1_P4F6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152707788-1577033 Batch2_NCIH292_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201643322-1882016 16B10_rep_C_Felbamateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201643322-1882016 16B10_rep_C_Felbamateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30145 - GI-16-672.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114038574-1874802 11A09_rep_D_Furazolidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114038574-1874802 11A09_rep_D_Furazolidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpMat3_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_62.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D10_id_MSn_positive.mzML at line 21
index 610 is out of bounds for axis 0 with size 610
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB1C20.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190111_ES_H3K_batch12_repC_183.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112751859-1922142 4_B4_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112751859-1922142 4_B4_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD3_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/538-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153259529-1577319 Batch5_OVCAR5_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_58.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mepA_P5H9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (mepA_P5H9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/blank_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.alb_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101618823-1869544 07H05_rep_C_Tolazamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101618823-1869544 07H05_rep_C_Tolazamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_qc_med (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L66cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L66cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085122/peak/18.mzXML at line 689
Specification mandates value for attribute fSH8PThfZTmpL6j5zgODC52pHtipmnAGShu4afx2pxc, line 32123, column 50 (18.mzXML, line 32123)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150926438-1924661 2_C10_RGT2_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150926438-1924661 2_C10_RGT2_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007512_031618-0.01Thr3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sgbU_P4H6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (sgbU_P4H6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085693/ccms_peak/MRM-validation cohort/BC MRM 4th batch.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152719778-1577043 Batch2_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152552396-1576970 Batch2_NCIH647_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET99.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET99.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114026231-1874792 11A01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114026231-1874792 11A01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_133_2A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD4_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_60.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ6_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GB1_01_12079.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D4_id_MSn_positive.mzML at line 21
index 416 is out of bounds for axis 0 with size 416
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_73.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122947046-1880175 15B03_rep_D_Melengestrol_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122947046-1880175 15B03_rep_D_Melengestrol_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/685.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8E01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170125_034EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/2f/4d12930a5caa52f1ca29938374fd38/input_file/MMW5_20170125_034EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1063.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1063.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD5_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121613726-1879550 15H06_rep_A_Pravastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121613726-1879550 15H06_rep_A_Pravastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114329142-1922922 4_A2_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114329142-1922922 4_A2_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123647401-1876211 08F08_rep_C_Quipazine_dimaleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123647401-1876211 08F08_rep_C_Quipazine_dimaleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152447180-1576916 Batch2_BT20_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2C10Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150435692-1924412 1_A5_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150435692-1924412 1_A5_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082996/peak/BAX88 blank QC MeOH POSITIVE/blank_BA12_BA12_01_14713.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_C10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_G2_id_positive.mzML at line 21
index 304 is out of bounds for axis 0 with size 304
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150230352-1864712 02G02_rep_B_Verapamil hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150230352-1864712 02G02_rep_B_Verapamil hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125537577-1877056 12G01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125537577-1877056 12G01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153237364-1577301 Batch4_A427_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092300319-1878762 14F04_rep_A_Misoprostola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092300319-1878762 14F04_rep_A_Misoprostola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151511677-1576450 Batch6_SR8714_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysJ_P4A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (cysJ_P4A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/435.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223821006-1870306 01B06_rep_C_Heptaminol hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223821006-1870306 01B06_rep_C_Heptaminol hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/msrA_P3G4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (msrA_P3G4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112509491-1874106 10C10_rep_D_Isoetharine_mesylate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112509491-1874106 10C10_rep_D_Isoetharine_mesylate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_02_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_02_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_H8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_H8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Stenotrophomonas_maltophilia_SmFLR01_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080705/ccms_peak/RAW/SILAC 24h.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_A2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222731743-1869813 01H08_rep_A_Prednisonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222731743-1869813 01H08_rep_A_Prednisonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_152.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_369.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190119_ES_H3K_batch14_repC_211.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170125_035EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b0/15f4a993d5877198f25704363b53e6/input_file/SH10_20170125_035EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124043724-1876399 08G03_rep_D_Amisulprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124043724-1876399 08G03_rep_D_Amisulprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET37.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET37.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisB_P4E10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (hisB_P4E10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223215943-1870027 01F10_rep_B_Pheniramine maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223215943-1870027 01F10_rep_B_Pheniramine maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glcF_P3A2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (glcF_P3A2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H2_id.mzML at line 21
index 577 is out of bounds for axis 0 with size 577
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ3_3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_5_1_rep_1_B-C8_1_5660.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_C12_id_negative.mzML at line 21
index 270 is out of bounds for axis 0 with size 270
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7C08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P15_id_MSn_positive.mzML at line 21
index 383 is out of bounds for axis 0 with size 383
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_Batch03_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ilvI_P3G9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (ilvI_P3G9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/003_Soil_500mMExtra_2_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I13_id_MSn_negative.mzML at line 21
index 298 is out of bounds for axis 0 with size 298
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/158-4_MsMs_25min_40eV_GE6_01_4138.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L16_id_MSn_negative.mzML at line 21
index 357 is out of bounds for axis 0 with size 357
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frlC_P3H3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (frlC_P3H3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5N002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124342104-1862326 03D11_rep_A_Camptothecine_(S,+)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124342104-1862326 03D11_rep_A_Camptothecine_(S,+)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112100117-1921782 2_A9_GAP1_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112100117-1921782 2_A9_GAP1_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125017517-1862757 03B11_rep_C_Flutamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125017517-1862757 03B11_rep_C_Flutamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122256009-1867341 04D04_rep_D_Cortisoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122256009-1867341 04D04_rep_D_Cortisoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_rerun_G3_01_11768.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person1_Blood_POS.mzXML at line 689
attributes construct error, line 38, column 73 (Person1_Blood_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/003_Ammonia_Day14_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_QC8.mzXML at line 689
Premature end of data in tag msRun line 5, line 16903, column 1 (L_QC8.mzXML, line 16903)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control231_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control231_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cbdB_P5A3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (cbdB_P5A3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O1_id.mzML at line 21
index 581 is out of bounds for axis 0 with size 581
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD081_P1-B-1_01_2416.mzML at line 689
Specification mandates value for attribute unitAFNonHWPHwnH00NU9muPh0Ph0oXPlD3LtFCFbJx6Bw1Kf2ubOiYBz1dWVzxUicKOGf6BjSQT8EqQthpZFYPFBtQ1NyyPQ05LOjlOLQFCn545t6hGQmlAtb9COQEbOvRyBTgQO, line 226797, column 236 (CD081_P1-B-1_01_2416.mzML, line 226797)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111525967-1871529 10H11_rep_B_Amrinonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111525967-1871529 10H11_rep_B_Amrinonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlA3a.mzXML at line 689
expected '>', line 718, column 11 (ExtraControlA3a.mzXML, line 718)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/492-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_CABIN_sample01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100530545-1869028 06F06_rep_D_Mebhydroline_1,5-naphtalenedisulfonateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100530545-1869028 06F06_rep_D_Mebhydroline_1,5-naphtalenedisulfonateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125831436-1877190 13B07_rep_A_Tracazolate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125831436-1877190 13B07_rep_A_Tracazolate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113800555-1922630 3_A2_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113800555-1922630 3_A2_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/868.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092740883-1878980 14A06_rep_B_Sertaconazole_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092740883-1878980 14A06_rep_B_Sertaconazole_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpF_#3_P4B11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (atpF_#3_P4B11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoA_P3A2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (nuoA_P3A2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I21_id_MSn_negative.mzML at line 21
index 342 is out of bounds for axis 0 with size 342
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample143_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/ControlC21_pos.mzXML at line 689
attributes construct error, line 37, column 72 (ControlC21_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-qc_low (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130431591-1877466 13D06_rep_B_Fluvoxamine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130431591-1877466 13D06_rep_B_Fluvoxamine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample003.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample074_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_B7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_B7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089329/ccms_peak/GM(+)-LC-22M005-GNPS_20eV-G14_081.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000089329/ccms_peak/GM(+)-LC-22M005-GNPS_20eV-G14_081.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190123195512.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_120_3B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112007405-1921737 2_C8_GAP1_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112007405-1921737 2_C8_GAP1_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD4_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201418571-1881910 16F08_rep_C_Lofepramineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201418571-1881910 16F08_rep_C_Lofepramineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152020859-1576705 Batch1_HCC1806_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170207_038EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/cf/9c7d9129b2026052ba1f243993bda9/input_file/MMW5_20170207_038EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_339.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152032465-1867958 05F04_rep_C_Amethopterin_(R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152032465-1867958 05F04_rep_C_Amethopterin_(R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ynfG_P4B2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (ynfG_P4B2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD5_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153902226-1577619 Batch7_MIAPACA2_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-012.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-012.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-3d.mzXML at line 689
Premature end of data in tag peaks line 6496, line 6500, column 15864 (YnYn-3d.mzXML, line 6500)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L3_id_MSn_negative.mzML at line 21
index 351 is out of bounds for axis 0 with size 351
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1335.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1335.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S25_0123.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121038190-1879299 14D07_rep_D_Ciprofibrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121038190-1879299 14D07_rep_D_Ciprofibrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152142114-1868014 05D03_rep_C_Dobutamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152142114-1868014 05D03_rep_C_Dobutamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_40_NOR_30.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_40_NOR_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101339446-1869419 07F08_rep_B_Piracetama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101339446-1869419 07F08_rep_B_Piracetama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/105_93.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/R24_I_ESI+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_E12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_E12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202434401-1878383 10A05_rep_A_Sulfamethoxypyridazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202434401-1878383 10A05_rep_A_Sulfamethoxypyridazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V8_EDTAk2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R37_5h3a.mzML at line 2644
'name'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD4_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223742478-2227620 PAT38.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/780.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GF11_01_11539.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N18_id.mzML at line 21
index 594 is out of bounds for axis 0 with size 594
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_0124_190125050755.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153121699-1868457 06A03_rep_B_Haloproginb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153121699-1868457 06A03_rep_B_Haloproginb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_CABIN_sample02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_A10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_A8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_blank_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122141888-1867282 04F05_rep_D_Pimethixene_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122141888-1867282 04F05_rep_D_Pimethixene_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009616_IBD200_E1_B6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150256663-1864732 02D10_rep_B_Picotamide monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150256663-1864732 02D10_rep_B_Picotamide monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD4_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122714560-1867550 05H01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122714560-1867550 05H01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/XYT-2d.mzXML at line 689
Premature end of data in tag peaks line 4026, line 4030, column 7671 (XYT-2d.mzXML, line 4030)
Error processing file: /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_43.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_43.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114054847-1922784 4_D3_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114054847-1922784 4_D3_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122644499-1867526 05B04_rep_A_Zidovudine,_AZTa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122644499-1867526 05B04_rep_A_Zidovudine,_AZTa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/52-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121546111-1867000 04F03_rep_B_Trazodone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121546111-1867000 04F03_rep_B_Trazodone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153457524-1577415 Batch4_NCIH2342_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223902831-1870339 01G10_rep_C_Acebutolol hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223902831-1870339 01G10_rep_C_Acebutolol hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_H2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124107975-1876418 08H06_rep_D_Aceclidine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124107975-1876418 08H06_rep_D_Aceclidine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153105085-1577227 Batch3_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHO02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-055_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/352.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD6_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100614900-1869063 07F04_rep_A_Phenacetina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100614900-1869063 07F04_rep_A_Phenacetina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152344102-1576866 Batch2_NCIH460_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlA2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlA2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113444792-1922461 2_F11_IZH2_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113444792-1922461 2_F11_IZH2_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_F5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122809259-1867595 05A04_rep_A_Chlorpropamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122809259-1867595 05A04_rep_A_Chlorpropamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_E11_id_negative.mzML at line 21
index 301 is out of bounds for axis 0 with size 301
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O16_id_MSn_positive.mzML at line 21
index 378 is out of bounds for axis 0 with size 378
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125249531-1876928 12A09_rep_D_Promethazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125249531-1876928 12A09_rep_D_Promethazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/002_Urea_Day0_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_92.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHF06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_A7_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124510389-1876615 09E10_rep_A_Butylscopolammonium_(n-)_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124510389-1876615 09E10_rep_A_Butylscopolammonium_(n-)_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100419099-1868971 06C03_rep_D_Zotepinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100419099-1868971 06C03_rep_D_Zotepinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/482-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_C3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124152538-1862239 03D03_rep_A_Thalidomidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124152538-1862239 03D03_rep_A_Thalidomidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_MICU_426_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GG6_01_16983.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202229123-1882285 16C03_rep_D_Donepezil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202229123-1882285 16C03_rep_D_Donepezil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_32.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_32.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150725588-1864939 02E05_rep_C_Tioconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150725588-1864939 02E05_rep_C_Tioconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124135505-1862226 03F08_rep_A_Mebendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124135505-1862226 03F08_rep_A_Mebendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153915335-1577630 Batch7_NCIH441_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_G12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GD5_01_11670.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222939782-1869910 01A05_rep_A_Metformin hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222939782-1869910 01A05_rep_A_Metformin hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample093_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH31.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_66.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-PDAC40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GE1_01_16832.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170207_059EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b2/c400f8fa14bc395f60e6d581b78b81/input_file/SH9_20170207_059EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082742/ccms_peak/ST000775/EX00417/Raw data/Lipidomics/POS/20150318_Pooled.mzXML at line 689
Specification mandates value for attribute RBDtMT4SJKtEEPD3PuBy0EQQ9I09kihRRBD5xj5C48tEEP8wPnOhJUQRAKA8wuicRBECmz42uzlEEQWFPZIw3kQRBtM9kjGHRBEIWT2SMktEEQohPja, line 41424, column 119 (20150318_Pooled.mzXML, line 41424)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100150444-1868854 06H08_rep_D_Progesteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100150444-1868854 06H08_rep_D_Progesteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/speE_P4D1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (speE_P4D1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201452741-1881936 16E09_rep_C_Homoveratrylamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201452741-1881936 16E09_rep_C_Homoveratrylamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/caiB_P3A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (caiB_P3A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiE_P3G10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (thiE_P3G10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_ISP2_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B02P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample22n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8C10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/psuK_P4H7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (psuK_P4H7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7F08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009406_IBD200_E4_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acpS_#2_P3E8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (acpS_#2_P3E8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pagP_P3E3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (pagP_P3E3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET42.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET42.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145821804-1864037 02E04_rep_A_Dehydrocholic acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145821804-1864037 02E04_rep_A_Dehydrocholic acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201225751-1877829 09B09_rep_B_Suxibuzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201225751-1877829 09B09_rep_B_Suxibuzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114303415-1922899 4_E4_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114303415-1922899 4_E4_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tonB_P4B5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (tonB_P4B5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091827019-1878548 13D07_rep_D_Prothionamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091827019-1878548 13D07_rep_D_Prothionamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B03Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151705652-1576545 Batch7_SKMES1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/TAA486_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_E9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_E9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150423810-1924402 1_E2_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150423810-1924402 1_E2_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200931602-1881696 16H02_rep_A_Cisatracurium_besylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200931602-1881696 16H02_rep_A_Cisatracurium_besylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_H10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_H10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123017572-1867695 05E05_rep_B_Metergolineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123017572-1867695 05E05_rep_B_Metergolineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHL03.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152954831-1577174 Batch3_SU8686_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202139449-1882246 16F11_rep_D_Ritonavirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202139449-1882246 16F11_rep_D_Ritonavirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L3_id_MSn_negative.mzML at line 21
index 347 is out of bounds for axis 0 with size 347
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/822.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OD5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_11P_A12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STE1_50EV_RA2_01_22714.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6E08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180827_ES_H3K_batch11_repA_164.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mntH_P3E10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (mntH_P3E10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113333038-1874498 11H03_rep_B_Iopromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113333038-1874498 11H03_rep_B_Iopromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080174/ccms_peak/YR.mzXML at line 103
The truth value of an array with more than one element is ambiguous. Use a.any() or a.all()
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_elow (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I9_id_MSn_positive.mzML at line 21
index 343 is out of bounds for axis 0 with size 343
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085122/peak/22.mzXML at line 689
error parsing attribute name, line 10101, column 29 (22.mzXML, line 10101)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ1_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybbO_#1_P4G10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (ybbO_#1_P4G10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/44-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/004_Nitrate_Day11_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152512634-1576937 Batch1_CALU1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153546461-1577455 Batch4_SKOV3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1142.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1142.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_A4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike0_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170207_046EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/80/4f545477e3add7e8a1977a09c2bec1/input_file/MMW5_20170207_046EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GD11_01_11877.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200938460-1877707 09A06_rep_B_Flurandrenolideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200938460-1877707 09A06_rep_B_Flurandrenolideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/524-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_QC_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/040_CRa_H9M5_M470_L03_K1_low_pos.mzXML at line 689
Premature end of data in tag peaks line 15486, line 15490, column 3575 (040_CRa_H9M5_M470_L03_K1_low_pos.mzXML, line 15490)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/queF_#3_P3A2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (queF_#3_P3A2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092035825-1878649 14F06_rep_A_Cyclopentolate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092035825-1878649 14F06_rep_A_Cyclopentolate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153927187-1577640 Batch6_NCIH1299_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_193.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_51.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_51.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample180.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082718/ccms_peak/peak/ST000666/EX00376-lipidomics/Raw data/POS/20141119_Test.mzXML at line 689
expected '>', line 23201, column 17 (20141119_Test.mzXML, line 23201)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-15d.mzXML at line 689
Premature end of data in tag peaks line 3266, line 3270, column 7671 (YnYn-15d.mzXML, line 3270)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151333128-1924874 3_H8_SNF3_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151333128-1924874 3_H8_SNF3_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_C11_id_positive.mzML at line 21
index 361 is out of bounds for axis 0 with size 361
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P10_id_MSn_positive.mzML at line 21
index 683 is out of bounds for axis 0 with size 683
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI1b_2_24_1_893.mzML at line 689
AttValue: ' expected, line 2503941, column 52 (50130_microPOTS_Rat_Brain_ROI1b_2_24_1_893.mzML, line 2503941)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G18_id_MSn_positive.mzML at line 21
index 428 is out of bounds for axis 0 with size 428
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_92.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125422103-1862954 03H11_rep_D_Proglumidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125422103-1862954 03H11_rep_D_Proglumidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102046602-1869763 07G06_rep_D_Tetramisole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102046602-1869763 07G06_rep_D_Tetramisole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GE3_01_17070.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K20_id_MSn_positive.mzML at line 21
index 365 is out of bounds for axis 0 with size 365
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-blank (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Blank_pesticide_170404144611.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122224131-1867315 04B10_rep_D_Ethacrynic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122224131-1867315 04B10_rep_D_Ethacrynic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wzxE_P5F5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (wzxE_P5F5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086152/peak/Peak_List_Files/WSU_Sleep_SC_E066_night_M_L_066_POS_20Aug18_Brandi-WCSH7803.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (WSU_Sleep_SC_E066_night_M_L_066_POS_20Aug18_Brandi-WCSH7803.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125507801-1862991 03H01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125507801-1862991 03H01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200628489-1881561 16H03_rep_A_Pemetrexed_disodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200628489-1881561 16H03_rep_A_Pemetrexed_disodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145604385-1863926 02D05_rep_A_Ampicillin trihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145604385-1863926 02D05_rep_A_Ampicillin trihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152225670-1868047 05H10_rep_D_Prochlorperazine_dimaleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152225670-1868047 05H10_rep_D_Prochlorperazine_dimaleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094364/raw/20230201_MV19_12C_DOM_extract_b_tr2_pos_zh.mzXML at line 689
Premature end of data in tag peaks line 3109, line 3113, column 2330 (20230201_MV19_12C_DOM_extract_b_tr2_pos_zh.mzXML, line 3113)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223919444-2227704 PAT37.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_62.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101357137-1869433 07D01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101357137-1869433 07D01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152410923-1868127 05C11_rep_D_Clozapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152410923-1868127 05C11_rep_D_Clozapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/scpA_P3B6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (scpA_P3B6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091938571-1878605 13G11_rep_D_Torsemideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091938571-1878605 13G11_rep_D_Torsemideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_G3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224221940-1870492 01D03_rep_D_Epirizoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224221940-1870492 01D03_rep_D_Epirizoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_B4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125136924-1862820 03G08_rep_C_Clemizole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125136924-1862820 03G08_rep_C_Clemizole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200542715-1881527 16A01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200542715-1881527 16A01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tnaA_P4F7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (tnaA_P4F7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/uridine.mzXML at line 689
Premature end of data in tag peaks line 21047, line 21051, column 81388 (uridine.mzXML, line 21051)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007731_032318-5CRP6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/3.4_ITA.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlC2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlC2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/879.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E15_id_negative.mzML at line 21
index 246 is out of bounds for axis 0 with size 246
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_21_RIN_51.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_21_RIN_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C21_id_MSn_negative.mzML at line 21
index 296 is out of bounds for axis 0 with size 296
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_rerun_H11_01_11787.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GD1_01_17177.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_F4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152626110-1576998 Batch2_NCIH647_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201935978-1878148 09B08_rep_D_Benzamil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201935978-1878148 09B08_rep_D_Benzamil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170127_015ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/90/223919874a25f9a2960ba5d8bf5c6f/input_file/MMW6_20170127_015ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAJ06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091647419-1878469 13D08_rep_D_Fluticasone_propionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091647419-1878469 13D08_rep_D_Fluticasone_propionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc050_pos.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc050_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125246923-1876926 12B05_rep_D_Butylparabenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125246923-1876926 12B05_rep_D_Butylparabenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_QC_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190127_ES_H3K_batch15_repA_221.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122211665-1879822 15H03_rep_C_Moxifloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122211665-1879822 15H03_rep_C_Moxifloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111340180-1871448 10B04_rep_B_Metoprolol-(+,-)_(+)-tartrate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111340180-1871448 10B04_rep_B_Metoprolol-(+,-)_(+)-tartrate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114808248-1875158 12B06_rep_B_Aminohippuric_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114808248-1875158 12B06_rep_B_Aminohippuric_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/862.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Liver_raw files/Lumos_ISAS_liver_QC1.mzML at line 689
Premature end of data in tag spectrumList line 92, line 55049, column 1 (Lumos_ISAS_liver_QC1.mzML, line 55049)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD6_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153556104-1577463 Batch4_184A1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_QC_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw4_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_201.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S005_0124.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_29_AC+_52.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_99.mzXML at line 689
Premature end of data in tag peaks line 32679, line 32683, column 15937 (20121114_99.mzXML, line 32683)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122633135-1880023 15C07_rep_D_Candesartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122633135-1880023 15C07_rep_D_Candesartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR07/WithKBr/140610pCEtDBAFS.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/620.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample081_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124822319-1862665 03E10_rep_B_Metoclopramide_monohydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124822319-1862665 03E10_rep_B_Metoclopramide_monohydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_aqueous_longstudy_230215_178.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trpA_P3H11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (trpA_P3H11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisJ_#1_P4H7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (hisJ_#1_P4H7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_E6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhmA_P3C12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (rhmA_P3C12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125307236-1862893 03C10_rep_C_Aminopurine,_6-benzylb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125307236-1862893 03C10_rep_C_Aminopurine,_6-benzylb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/906.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ4_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210112_AD_15.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J19_id_MSn_negative.mzML at line 21
index 348 is out of bounds for axis 0 with size 348
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C11_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ugd_P3A8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (ugd_P3A8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153007928-1577185 Batch3_BTFC905_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/eamA_P3F5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (eamA_P3F5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/deoD_P3E7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (deoD_P3E7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine64cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine64cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C2_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample076.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/471-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mqo_P4G4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (mqo_P4G4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person12_plasma_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person12_plasma_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_258.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wbbJ_P5B10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (wbbJ_P5B10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151054566-1924737 3_C2_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151054566-1924737 3_C2_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GH5_01_16998.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_A3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES333.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/002_1010_1_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C7_id_MSn_negative.mzML at line 21
index 270 is out of bounds for axis 0 with size 270
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088889/raw/hmmm_t15_biomassextract_062021/QE_062521_CLCpos.mzML at line 689
attributes construct error, line 397201, column 123 (QE_062521_CLCpos.mzML, line 397201)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113346022-1922410 2_H1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113346022-1922410 2_H1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/246.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121800577-1879632 15G09_rep_B_Cilnidipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121800577-1879632 15G09_rep_B_Cilnidipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151317164-1924860 3_A1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151317164-1924860 3_A1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092756/peak/05082023-neg-philic-peaklist/neg_inf_non_7009_Female_64_267_R_B7.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GE7_01_16838.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111959791-1872609 10E07_rep_C_Tinidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111959791-1872609 10E07_rep_C_Tinidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR07/WithKBr/140311P6.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007671_032118-1CRP1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_B1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150444742-1924419 1_E1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150444742-1924419 1_E1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113924226-1874742 11D04_rep_D_Ifosfamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113924226-1874742 11D04_rep_D_Ifosfamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113453869-1922469 2_B11_IZH2_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113453869-1922469 2_B11_IZH2_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD1_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007487_031618-Unst1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100917916-1869210 07F02_rep_A_Pirenperoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100917916-1869210 07F02_rep_A_Pirenperoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101249540-1869379 07G10_rep_B_Trimetazidine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101249540-1869379 07G10_rep_B_Trimetazidine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112651803-1922089 4_B5_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112651803-1922089 4_B5_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D5_id_MSn_negative.mzML at line 21
index 318 is out of bounds for axis 0 with size 318
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201512244-1877950 09H11_rep_C_Cefuroxime_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201512244-1877950 09H11_rep_C_Cefuroxime_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD1_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiG_#2_P5A8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (thiG_#2_P5A8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_88.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_88.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/setA_P3A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (setA_P3A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125244325-1876924 12D03_rep_D_Monobenzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125244325-1876924 12D03_rep_D_Monobenzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_C5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124714974-1876710 09H05_rep_A_Isosorbide_dinitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124714974-1876710 09H05_rep_A_Isosorbide_dinitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_C12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153047417-1577213 Batch3_647V_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151156481-1576288 Batch5_NCIH446_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111757733-1921626 1_D2_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111757733-1921626 1_D2_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G7_id_MSn_negative.mzML at line 21
index 272 is out of bounds for axis 0 with size 272
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hD2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hD2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LIM1_30EV_RA6_01_22674.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/GNPS-Nudibranch/converted coba2/200609_sample_50.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_186.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Microbacterium_testaceum_BM5L003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rpiB_P4E4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (rpiB_P4E4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_05_470_prot_25_IMS_12Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200600138-1881540 16F07_rep_A_Flumethasone_pivalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200600138-1881540 16F07_rep_A_Flumethasone_pivalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/175-4_idMsMs_25min_20eV_GE2_01_4240.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V2_LH.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113205927-1874428 11E11_rep_B_Equilina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113205927-1874428 11E11_rep_B_Equilina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpMat1_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR224h1a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_32_male_2022_1017_Michael_neg-0.0058.mzML at line 689
Premature end of data in tag binary line 24823, line 24823, column 344852 (4_32_male_2022_1017_Michael_neg-0.0058.mzML, line 24823)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_E8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_E8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_001_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125250916-1876929 12G04_rep_D_Pralidoxime_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125250916-1876929 12G04_rep_D_Pralidoxime_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4E04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101629548-1869553 07D05_rep_C_Pyrazinamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101629548-1869553 07D05_rep_C_Pyrazinamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150830855-1864990 02A01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150830855-1864990 02A01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_CABIN_sample06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-115_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G08Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122416224-1867406 04F03_rep_D_Trazodone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122416224-1867406 04F03_rep_D_Trazodone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_E5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folD_P3F6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (folD_P3F6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124136562-1876441 08F09_rep_D_Acipimoxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124136562-1876441 08F09_rep_D_Acipimoxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_E10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114109481-1922797 4_D11_STE2_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114109481-1922797 4_D11_STE2_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case15_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case15_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124915552-1876768 12B08_rep_C_Pipemidic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124915552-1876768 12B08_rep_C_Pipemidic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_58.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125356628-1862933 03E03_rep_D_Tiratricol,_3,3',5-triiodothyroacetic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125356628-1862933 03E03_rep_D_Tiratricol,_3,3',5-triiodothyroacetic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121949696-1879714 15G07_rep_B_Montelukasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121949696-1879714 15G07_rep_B_Montelukasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180908_ES_H3K_batch1_repB_10.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30156 - GI-17-480.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/846.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112527474-1922015 4_F1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112527474-1922015 4_F1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_E5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/618.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G17_id_MSn_positive.mzML at line 21
index 439 is out of bounds for axis 0 with size 439
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240408_pluskal_enammol_5004_A1_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080280.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30112 - GI-14-554.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112828590-1874264 11H11_rep_A_Carbachola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112828590-1874264 11H11_rep_A_Carbachola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_0124_190124212247.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET135.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET135.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_H6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_H6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_sample09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101345847-1869424 07A06_rep_C_Cefaclor_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101345847-1869424 07A06_rep_C_Cefaclor_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-009.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-009.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O4_id_MSn_positive.mzML at line 21
index 400 is out of bounds for axis 0 with size 400
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_07_737_prot_57_IMS_12Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/blank_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L58.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L58.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223925992-2227710 PAT41.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153224636-1868506 06C04_rep_B_Carisoprodola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153224636-1868506 06C04_rep_B_Carisoprodola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111645593-1921564 1_E8_GAP1_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111645593-1921564 1_E8_GAP1_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092603859-1878905 14E08_rep_B_Nelarabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092603859-1878905 14E08_rep_B_Nelarabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I13_id.mzML at line 21
index 536 is out of bounds for axis 0 with size 536
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S61.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S61.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/773.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD6_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/708.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130701410-1877584 13H03_rep_C_Articaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130701410-1877584 13H03_rep_C_Articaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201721652-1882045 16B01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201721652-1882045 16B01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_7_B-A2_1_5645.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151149453-1576282 Batch5_LUDLU1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_A9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/iscS_#1_P4F6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (iscS_#1_P4F6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150236951-1924313 1_C5_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150236951-1924313 1_C5_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124309307-1876516 08C07_rep_D_Alfacalcidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124309307-1876516 08C07_rep_D_Alfacalcidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_low (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O6_id_MSn_negative.mzML at line 21
index 339 is out of bounds for axis 0 with size 339
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150417212024.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D2_id.mzML at line 21
index 525 is out of bounds for axis 0 with size 525
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person26_RBC_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 81 (Person26_RBC_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114633326-1875084 12A08_rep_A_Oxybenzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114633326-1875084 12A08_rep_A_Oxybenzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101540252-1869513 07C04_rep_C_Cetirizine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101540252-1869513 07C04_rep_C_Cetirizine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_sp_WIAJ11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125815716-1877178 13E10_rep_A_Pivampicillinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125815716-1877178 13E10_rep_A_Pivampicillinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3D01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike0_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152159523-1576783 Batch1_NCIH1703_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_252.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_C9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113515712-1874543 11E01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113515712-1874543 11E01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/594.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113236123-1874452 11H02_rep_B_Iopamidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113236123-1874452 11H02_rep_B_Iopamidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/882.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2A12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130248775-1877386 13B04_rep_B_Pirlindole_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130248775-1877386 13B04_rep_B_Pirlindole_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR23h2a.mzML at line 689
Specification mandates value for attribute unitAccP8iegT, line 14795, column 134 (pBlateR23h2a.mzML, line 14795)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153016068-1868408 06E11_rep_A_Dicloxacillin_sodium_salt_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153016068-1868408 06E11_rep_A_Dicloxacillin_sodium_salt_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K1_id.mzML at line 21
index 600 is out of bounds for axis 0 with size 600
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_107.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_107.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/392.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgm_#3_P5C8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (pgm_#3_P5C8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125758484-1863131 04F06_rep_A_Pergolide_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125758484-1863131 04F06_rep_A_Pergolide_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Aeromonas_salmonicida_EB1K004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122253626-1867339 04C01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122253626-1867339 04C01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121124446-1879334 14G09_rep_D_Mephenytoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121124446-1879334 14G09_rep_D_Mephenytoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201900070-1882122 16G01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201900070-1882122 16G01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100154445-1868857 06C11_rep_D_Cisapridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100154445-1868857 06C11_rep_D_Cisapridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_G6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223645955-1870233 01D04_rep_C_Diprophyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223645955-1870233 01D04_rep_C_Diprophyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_02_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_02_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/26.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L9 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123554248-1876169 08F10_rep_C_Diflorasone_Diacetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123554248-1876169 08F10_rep_C_Diflorasone_Diacetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glnA_#3_P5H6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (glnA_#3_P5H6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007499_031618-Unst6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101449870-1869475 07H09_rep_C_Gliclazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101449870-1869475 07H09_rep_C_Gliclazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E4_id_MSn_positive.mzML at line 21
index 545 is out of bounds for axis 0 with size 545
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_67.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person3_Plasma_NEG.mzXML at line 689
attributes construct error, line 38, column 74 (Person3_Plasma_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/283.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224029718-1870405 01F10_rep_D_Pheniramine maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224029718-1870405 01F10_rep_D_Pheniramine maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpE_P5E1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (atpE_P5E1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_G10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J7_id_MSn_negative.mzML at line 21
index 330 is out of bounds for axis 0 with size 330
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G7_id_MSn_positive.mzML at line 21
index 415 is out of bounds for axis 0 with size 415
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100433279-1868982 06C02_rep_D_Suloctidilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100433279-1868982 06C02_rep_D_Suloctidilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_07_750_prot_16_IMS_11Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113713618-1874637 11D04_rep_C_Ifosfamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113713618-1874637 11D04_rep_C_Ifosfamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_19_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_19_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Streptomyces_sp_OS306Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100720560-1869117 07G04_rep_A_Betahistine_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100720560-1869117 07G04_rep_A_Betahistine_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD1_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/687.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00073377.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/1.4_DMSO.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100357916-1868954 06E05_rep_D_Oxcarbazepineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100357916-1868954 06E05_rep_D_Oxcarbazepineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201403925-1877901 09A05_rep_C_N-Acetyl-DL-homocysteine_Thiolactoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201403925-1877901 09A05_rep_C_N-Acetyl-DL-homocysteine_Thiolactoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152535344-1576956 Batch2_BXPC3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3E02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223806624-1870295 01F01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223806624-1870295 01F01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090517/raw/TOF_PH_pos/20210429-IMINA-IM-1021__TOF_PH_Pos__1__010_01.mzML at line 689
Extra content at the end of the document, line 99033, column 1 (20210429-IMINA-IM-1021__TOF_PH_Pos__1__010_01.mzML, line 99033)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223804261-2227639 PAT35.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C1_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GF2_01_11528.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD6_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD1_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD1_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_54_AC+_48.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094943/raw/MS2/Blank_MeOH_2-r001.mzML at line 689
Premature end of data in tag indexedmzML line 2, line 37232, column 1 (Blank_MeOH_2-r001.mzML, line 37232)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/BeautyProducts_Vol4/BP4_01_17290.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C1_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112657451-1922094 4_E8_GPR1_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112657451-1922094 4_E8_GPR1_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metF_P3E9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (metF_P3E9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J16_id_MSn_positive.mzML at line 21
index 719 is out of bounds for axis 0 with size 719
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample197.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GC3_01_11650.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145940484-1864100 02D02_rep_B_Naloxone hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145940484-1864100 02D02_rep_B_Naloxone hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_19073146_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121951379-1867193 04F09_rep_C_Fipexide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121951379-1867193 04F09_rep_C_Fipexide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151752132-1576583 Batch3_5637_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125708586-1877126 13H09_rep_A_Methyldopate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125708586-1877126 13H09_rep_A_Methyldopate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101013595-1869254 07H04_rep_B_Pentamidine_isethionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101013595-1869254 07H04_rep_B_Pentamidine_isethionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample045.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150418072705.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_02062001_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124544428-1862422 03D04_rep_B_Oxolinic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124544428-1862422 03D04_rep_B_Oxolinic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H20_id_MSn_positive.mzML at line 21
index 597 is out of bounds for axis 0 with size 597
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112319548-1921903 3_C1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112319548-1921903 3_C1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pepB_P4A4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (pepB_P4A4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082793/ccms_peak/raw/MTBLS227/37382-A06-2.mzXML at line 689
Premature end of data in tag peaks line 1125, line 1129, column 44718 (37382-A06-2.mzXML, line 1129)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101300885-1869388 07A11_rep_B_Iobenguane_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101300885-1869388 07A11_rep_B_Iobenguane_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153706706-1868731 06E01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153706706-1868731 06E01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_A7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I11_id_negative.mzML at line 21
index 257 is out of bounds for axis 0 with size 257
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153213867-1577282 Batch4_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_08P_A11_id_negative.mzML at line 21
index 261 is out of bounds for axis 0 with size 261
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/276.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_G10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD4_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wecC_P3F12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (wecC_P3F12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122540141-1867474 05G04_rep_A_Nicardipine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122540141-1867474 05G04_rep_A_Nicardipine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8A06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153703155-1577519 Batch5_A704_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201847552-1882112 16C08_rep_D_Algestone_acetophenideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201847552-1882112 16C08_rep_D_Algestone_acetophenideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.co_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130727671-1877605 13E09_rep_C_Gabexate_mesilatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130727671-1877605 13E09_rep_C_Gabexate_mesilatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153716190-1577530 Batch4_977_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_C1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ1_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/menF_P3G5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (menF_P3G5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112135085-1921812 2_B8_GAP1_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112135085-1921812 2_B8_GAP1_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_16092759_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_CABIN_sample09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081530/ccms_peak/blank2_pos_91_01_5572.mzML at line 689
Premature end of data in tag index line 138137, line 138138, column 1 (blank2_pos_91_01_5572.mzML, line 138138)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person17_RBC_youth_POS.mzXML at line 689
attributes construct error, line 41, column 81 (Person17_RBC_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201513759-1877951 09H11_rep_C_Cefuroxime_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201513759-1877951 09H11_rep_C_Cefuroxime_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/dcamp_purB_P4B7_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (dcamp_purB_P4B7_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_G7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_098b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_3_B_rep_1_B-B1_1_5642.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153528381-1577440 Batch4_SW1573_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122209174-1879820 15C07_rep_C_Candesartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122209174-1879820 15C07_rep_C_Candesartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_C7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_02_leg_skin_control_oral_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_02_leg_skin_control_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153149917-1577263 Batch3_KNS62_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114152734-1922836 4_H8_STE2_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114152734-1922836 4_H8_STE2_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_high.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_77.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152444671-1576914 Batch2_MDAMB468_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092951061-1879083 14F08_rep_C_(-)-Isoproterenol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092951061-1879083 14F08_rep_C_(-)-Isoproterenol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lldD_P3G5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (lldD_P3G5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person20_plasma_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person20_plasma_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potD_#3_P6C4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (potD_#3_P6C4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GB2_01_17149.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample150.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yibQ_#1_P5E9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (yibQ_#1_P5E9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_32.mzXML at line 689
Premature end of data in tag peaks line 18841, line 18845, column 7748 (20121114_32.mzXML, line 18845)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/211-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152536521-1576957 Batch2_BXPC3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_9_Blood_Ma_control_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_9_Blood_Ma_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101040911-1869276 07E02_rep_B_Lofexidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101040911-1869276 07E02_rep_B_Lofexidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151755690-1576586 Batch3_J82_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6H06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/590.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yagF_P3G12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (yagF_P3G12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145636926-1863952 02D06_rep_A_Haloperidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145636926-1863952 02D06_rep_A_Haloperidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C9_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150707242-1924541 2_H11_RGT2_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150707242-1924541 2_H11_RGT2_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088138/raw/210916_tanaka07.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201010918-1881725 16E06_rep_B_Phenothiazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201010918-1881725 16E06_rep_B_Phenothiazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080128/ccms_peak/20100305_Ctherm_SWG_PU4_T03_48hr_SCX_LTQ3_Run1/20100305_Ctherm_SWG_PU4_T03_48hr_SCX_LTQ3_Run1_02.mzML at line 21
index 596 is out of bounds for axis 0 with size 596
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111745245-1871637 10A01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111745245-1871637 10A01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rpiA_P3G12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (rpiA_P3G12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/20221212_carryover_test_noISTD_PLASMA_sample03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150122285-1864179 02E08_rep_B_Isoconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150122285-1864179 02E08_rep_B_Isoconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170125_041EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/6d/b7ffaf0ebf1bb0c222bceabaf07fe8/input_file/SH9_20170125_041EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151806051-1867841 05D04_rep_C_Moclobemideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151806051-1867841 05D04_rep_C_Moclobemideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_083b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150108236-1864168 02G03_rep_B_Dipyridamoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150108236-1864168 02G03_rep_B_Dipyridamoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121026012-1879290 14B06_rep_D_Piperidolate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121026012-1879290 14B06_rep_D_Piperidolate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNT371_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD4_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_06_blood_RESV_oral_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_06_blood_RESV_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ2_1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/111-4_Ms_25min__GE4_01_4254.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092103583-1878670 14D04_rep_A_Bethanechol_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092103583-1878670 14D04_rep_A_Bethanechol_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201919268-1882137 16D01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201919268-1882137 16D01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD3_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092803281-1878997 14D01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092803281-1878997 14D01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_A6_id_MSn_negative.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125801467-1877167 13F11_rep_A_Rimexolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125801467-1877167 13F11_rep_A_Rimexolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1538.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1538.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F6_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082742/ccms_peak/ST000775/EX00417/Raw data/Lipidomics/NEG/20150318_Authentic.mzXML at line 689
Extra content at the end of the document, line 58185, column 2 (20150318_Authentic.mzXML, line 58185)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-017_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K18_id_MSn_negative.mzML at line 21
index 309 is out of bounds for axis 0 with size 309
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H19_id_MSn_positive.mzML at line 21
index 674 is out of bounds for axis 0 with size 674
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Rizobium_sp_OS308Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E1_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082744/ccms_peak/ST000763/EX00543/Raw data/Untargeted/POS/20160506_PO.mzXML at line 689
Extra content at the end of the document, line 72292, column 1 (20160506_PO.mzXML, line 72292)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIAG04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153845571-1577605 Batch6_HL60_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114717082-1875118 12C07_rep_B_Fluspirilena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114717082-1875118 12C07_rep_B_Fluspirilena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/15-4_idMsMs_25min_50eV_GE3_01_4248.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150715114-1924548 2_C8_RGT2_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150715114-1924548 2_C8_RGT2_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130738071-1877613 13G05_rep_C_Nifurtimoxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130738071-1877613 13G05_rep_C_Nifurtimoxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc032_neg.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc032_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/220.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100139620-1868846 06C08_rep_D_Dibenzepine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100139620-1868846 06C08_rep_D_Dibenzepine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNS335_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151925688-1867904 05H05_rep_C_Kanamycin_A_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151925688-1867904 05H05_rep_C_Kanamycin_A_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152515048-1576939 Batch2_OVCAR8_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/225.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_48_NOR_54.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_48_NOR_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123346717-1876066 08D10_rep_B_Celiprolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123346717-1876066 08D10_rep_B_Celiprolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_232.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F6_id_MSn_negative.mzML at line 21
index 357 is out of bounds for axis 0 with size 357
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202042273-1878200 09G09_rep_D_Benzethonium_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202042273-1878200 09G09_rep_D_Benzethonium_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150531097-1864851 02A05_rep_C_Moroxidine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150531097-1864851 02A05_rep_C_Moroxidine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150307466-1864740 02B06_rep_B_Lynestrenola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150307466-1864740 02B06_rep_B_Lynestrenola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_H3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125347908-1862926 03A06_rep_D_Ethosuximidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125347908-1862926 03A06_rep_D_Ethosuximidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112054550-1873037 10A11_rep_C_Balsalazide_Sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112054550-1873037 10A11_rep_C_Balsalazide_Sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112455536-1874095 10H01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112455536-1874095 10H01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152844940-1868338 06B06_rep_A_Modafinila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152844940-1868338 06B06_rep_A_Modafinila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dapF_P3D10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (dapF_P3D10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151110194-1865114 02C04_rep_D_Cyproheptadine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151110194-1865114 02C04_rep_D_Cyproheptadine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100226875-1868882 06G05_rep_D_Quetiapine_hemifumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100226875-1868882 06G05_rep_D_Quetiapine_hemifumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092259/ccms_peak/Sample0009.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113603551-1922529 2_B1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113603551-1922529 2_B1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122647061-1880034 15F03_rep_D_Atorvastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122647061-1880034 15F03_rep_D_Atorvastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114111032-1874828 11C10_rep_D_Dimethadionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114111032-1874828 11C10_rep_D_Dimethadionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123202755-1867776 05B08_rep_B_Procainamide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123202755-1867776 05B08_rep_B_Procainamide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5B06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_166.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153511834-1868638 06B04_rep_C_Carbarsonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153511834-1868638 06B04_rep_C_Carbarsonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_16092759_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample078_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130028807-1877279 13F04_rep_A_Deptropine_citratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130028807-1877279 13F04_rep_A_Deptropine_citratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/041_CRa_H9M5_M470_Blank_10_high_pos.mzXML at line 689
Premature end of data in tag peaks line 20369, line 20373, column 52725 (041_CRa_H9M5_M470_Blank_10_high_pos.mzXML, line 20373)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113514539-1922487 2_D8_IZH2_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113514539-1922487 2_D8_IZH2_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_86.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B06Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153309289-1577327 Batch4_NCIH2009_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_110.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_110.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_D2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_D2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092843882-1879029 14H08_rep_C_Azaperoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092843882-1879029 14H08_rep_C_Azaperoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_90.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152924175-1577148 Batch3_A498_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1101-B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120928918-1879247 14F05_rep_D_Sulfadoxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120928918-1879247 14F05_rep_D_Sulfadoxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009593_IBD200_E15_A9.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111602965-1921527 1_H1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111602965-1921527 1_H1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094943/raw/MS2/Moustafa_AB_MSMS2.mzML at line 689
AttValue: ' expected, line 20089, column 163 (Moustafa_AB_MSMS2.mzML, line 20089)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR231_5h2a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 203791, column 5193 (pBpumR231_5h2a.mzML, line 203791)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_68.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112557698-1874144 11F11_rep_A_Methylhydantoin-5-(L)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112557698-1874144 11F11_rep_A_Methylhydantoin-5-(L)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hC1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hC1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Microbacterium_BM5F001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152054874-1576732 Batch1_NCIH2030_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114000287-1922736 3_G5_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114000287-1922736 3_G5_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009445_IBD200_E6_B10.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case194_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case194_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101430947-1869460 07C09_rep_C_Acenocoumarolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101430947-1869460 07C09_rep_C_Acenocoumarolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112604959-1874150 11A09_rep_A_Furazolidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112604959-1874150 11A09_rep_A_Furazolidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211005_LKM_beads_mb_silica700_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120939497-1879255 14A02_rep_D_Etomidateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120939497-1879255 14A02_rep_D_Etomidateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150533648-1864853 02D01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150533648-1864853 02D01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/DMSO_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WIXX02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ompF_#1_P5C11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (ompF_#1_P5C11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHF08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaA_P3B4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (waaA_P3B4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_012712_Pseudomonas_BW10S1.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_ehigh (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124422176-1876576 09B07_rep_A_Lanatoside_Ca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124422176-1876576 09B07_rep_A_Lanatoside_Ca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case135_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case135_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_396.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD5_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009387_IBD200_E3_B2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086335/raw/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Arroz - MSConvert/12Apos.mzML at line 689
Unescaped '<' not allowed in attributes values, line 21604, column 8285 (12Apos.mzML, line 21604)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O5_id_MSn_positive.mzML at line 21
index 672 is out of bounds for axis 0 with size 672
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E7_id_MSn_positive.mzML at line 21
index 450 is out of bounds for axis 0 with size 450
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/992.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample168_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H18_id_negative.mzML at line 21
index 269 is out of bounds for axis 0 with size 269
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D6_id_MSn_negative.mzML at line 21
index 332 is out of bounds for axis 0 with size 332
Error processing file: /data/datasets/server/MassIVE/MSV000081119/ccms_peak/Beers19_ms2ldaPLUS/NEGmode/Beer_multibeers_18_T10_NEG.mzXML at line 689
Extra content at the end of the document, line 203405, column 1 (Beer_multibeers_18_T10_NEG.mzXML, line 203405)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150505015-1924436 1_G4_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150505015-1924436 1_G4_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114341672-1922933 4_G2_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114341672-1922933 4_G2_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alsK_P6E11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (alsK_P6E11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085179/peak/Paired_Omics/CUA874-6.mzXML at line 689
Invalid character: Char 0x0 out of allowed range
, line 12364, column 156856 (CUA874-6.mzXML, line 12364)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/220.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/001_Nitrate_Day4_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114151672-1922835 4_A7_STE2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114151672-1922835 4_A7_STE2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114643412-1875092 12G08_rep_B_Prazosin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114643412-1875092 12G08_rep_B_Prazosin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122414965-1867405 04B06_rep_D_Niflumic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122414965-1867405 04B06_rep_D_Niflumic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC06_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Bai_Glu_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101209902-1869347 07D03_rep_B_Iohexola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101209902-1869347 07D03_rep_B_Iohexola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hA3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hA3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H23_id.mzML at line 21
index 544 is out of bounds for axis 0 with size 544
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD6_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD6_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L13_id.mzML at line 21
index 576 is out of bounds for axis 0 with size 576
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_A3_id_negative.mzML at line 21
index 243 is out of bounds for axis 0 with size 243
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudF_P3G11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (nudF_P3G11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101521596-1869499 07D02_rep_C_Fluoxetine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101521596-1869499 07D02_rep_C_Fluoxetine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009575_IBD200_E14_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/galP_P4A8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (galP_P4A8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080285.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122839797-1880122 15E05_rep_D_Ethinylestradiola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122839797-1880122 15E05_rep_D_Ethinylestradiola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151239017-1924827 3_C9_SNF3_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151239017-1924827 3_C9_SNF3_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_81.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170127_047ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/4b/c9ebb13d07aeedd6efb49f014e4722/input_file/SH8_20170127_047ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M9_id.mzML at line 21
index 553 is out of bounds for axis 0 with size 553
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125443988-1877015 12H06_rep_D_Florfenicola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125443988-1877015 12H06_rep_D_Florfenicola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/767.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uraA_P4B3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (uraA_P4B3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/PDI-flfl-plasma-VLDL-25-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180426_ES_H3K_batch6_repD_44.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153234834-1868514 06E03_rep_B_Clobutinol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153234834-1868514 06E03_rep_B_Clobutinol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152034934-1576716 Batch1_NCIH1975_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4F07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121521593-1879510 15E02_rep_A_Clofibratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121521593-1879510 15E02_rep_A_Clofibratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated8hB3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated8hB3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/857.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111402608-1871465 10G11_rep_B_Cycloheximidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111402608-1871465 10G11_rep_B_Cycloheximidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151051058-1865099 02A09_rep_D_Amidopyrineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151051058-1865099 02A09_rep_D_Amidopyrineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151557874-1576488 Batch7_UACC62_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F3_id_MSn_positive.mzML at line 21
index 692 is out of bounds for axis 0 with size 692
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD3_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xapB_P4F7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (xapB_P4F7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Negative_FGF1_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223737896-2227616 PAT47.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124244548-1862280 03H06_rep_A_Carmofurb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124244548-1862280 03H06_rep_A_Carmofurb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/004_Nitrate_Day7_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_096b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA17.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B6_id_MSn_positive.mzML at line 21
index 536 is out of bounds for axis 0 with size 536
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_29.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_29.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152242429-1576817 Batch2_NCIH2172_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090213/ccms_peak/17March2022_005_VH BK Trang 10x_pos 1 .mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151543534-1576476 Batch7_UACC62_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121004385-1879274 14C07_rep_D_Methantheline_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121004385-1879274 14C07_rep_D_Methantheline_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152301378-1576832 Batch2_NCIH2122_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD1_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087808/raw/RIGHT_SSL_EI_sleep_STER_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_3022.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_3022.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151917251-1867897 05D02_rep_C_Chlorthalidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151917251-1867897 05D02_rep_C_Chlorthalidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152022692-1867950 05B09_rep_C_N6-methyladenosinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152022692-1867950 05B09_rep_C_N6-methyladenosinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153121387-1577240 Batch3_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007554_031618-1CRP4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_70.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike1_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD4_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152511399-1576936 Batch1_CALU1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130759006-1877630 13D06_rep_C_Fluvoxamine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130759006-1877630 13D06_rep_C_Fluvoxamine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GD5_01_12117.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_15102101_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125255067-1876932 12A04_rep_D_Digoxigeninb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125255067-1876932 12A04_rep_D_Digoxigeninb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_120_3B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ6_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122934346-1880165 15F04_rep_D_Azithromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122934346-1880165 15F04_rep_D_Azithromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cadA_P3D5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (cadA_P3D5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_131_2A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_19040307_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100412672-1868966 06F04_rep_D_Calcipotrieneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100412672-1868966 06F04_rep_D_Calcipotrieneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_79.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G18_id_MSn_positive.mzML at line 21
index 458 is out of bounds for axis 0 with size 458
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_02062001_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-5-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113207248-1874429 11E11_rep_B_Equilinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113207248-1874429 11E11_rep_B_Equilinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5C4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5C4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152218631-1576798 Batch2_VMCUB1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092305534-1878766 14G02_rep_A_Perindoprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092305534-1878766 14G02_rep_A_Perindoprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180821_ES_H3K_batch10_repA_142.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_24_NOR_53.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_24_NOR_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD3_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR324h1b.mzML at line 88
Invalid base64-encoded string: number of data characters (4453) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170207_047EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/15/1cb1b49cf84b7ce3236a478a49e265/input_file/SH8_20170207_047EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114119763-1922806 4_E10_STE2_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114119763-1922806 4_E10_STE2_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150635151-1864900 02E04_rep_C_Dehydrocholic acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150635151-1864900 02E04_rep_C_Dehydrocholic acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121858074-1867151 04E02_rep_C_Fludrocortisone_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121858074-1867151 04E02_rep_C_Fludrocortisone_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_0126_190128230236.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1026.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate15/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_rerun_BB2_01_11592.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0006_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES386.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fhuF_P3E2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (fhuF_P3E2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N16_id_MSn_positive.mzML at line 21
index 346 is out of bounds for axis 0 with size 346
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150035109-1864142 02B02_rep_B_Khellinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150035109-1864142 02B02_rep_B_Khellinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112559476-1922043 4_A11_GPR1_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112559476-1922043 4_A11_GPR1_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211206_LKM_mb_beads_nowash_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150136471-1864190 02B10_rep_B_Mianserine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150136471-1864190 02B10_rep_B_Mianserine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/163-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpBud3_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075258.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/srlE_#1_P4B12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (srlE_#1_P4B12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/cytidine.mzXML at line 689
Premature end of data in tag peaks line 5167, line 5171, column 105964 (cytidine.mzXML, line 5171)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_H4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/714.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152534178-1576955 Batch2_RERFLCSQ1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092345042-1878797 14D09_rep_A_Benzylpenicillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092345042-1878797 14D09_rep_A_Benzylpenicillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091851675-1878568 13H01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091851675-1878568 13H01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_P3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ygaZ_P3F1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (ygaZ_P3F1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malX_P4G3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (malX_P4G3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145815441-1864032 02E11_rep_A_Dexamethasone acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145815441-1864032 02E11_rep_A_Dexamethasone acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153515927-1577430 Batch4_977_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample090_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_168.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_17_Blood_CMC_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 88 (Mouse_17_Blood_CMC_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-cc5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample022.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_RBC_1h_POS.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer3_RBC_1h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purK_P3D5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (purK_P3D5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201336539-1877881 09D04_rep_C_Opipramol_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201336539-1877881 09D04_rep_C_Opipramol_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123242352-1876014 08G07_rep_B_Racecadotrila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123242352-1876014 08G07_rep_B_Racecadotrila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike3_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H3_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case207_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case207_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc1_T24_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHD10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/guaA_#3_P5C3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (guaA_#3_P5C3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lsrF_#1_P3G2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (lsrF_#1_P3G2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1585.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1585.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151407723-1576397 Batch6_HCC1937_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124723732-1876717 09H09_rep_A_Fluorometholoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124723732-1876717 09H09_rep_A_Fluorometholoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_07_358_prot_44_IMS_20Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123322442-1876046 08B03_rep_B_Mometasone_furoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123322442-1876046 08B03_rep_B_Mometasone_furoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085888/peak/peak/Geissolaevine_50_70_30.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_18091336_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124636079-1876679 09A04_rep_A_Flunisolideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124636079-1876679 09A04_rep_A_Flunisolideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125845442-1877201 13D01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125845442-1877201 13D01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MicrolunatusUncultured_LYG008.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/exuT_#3_P4D8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (exuT_#3_P4D8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A11_id_MSn_negative.mzML at line 21
index 244 is out of bounds for axis 0 with size 244
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person15_plasma_youth_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person15_plasma_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_079a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202147019-1882252 16C11_rep_D_Azatadine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202147019-1882252 16C11_rep_D_Azatadine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153712762-1577527 Batch4_NCIH1048_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_0124_190125022152.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124413477-1876569 09D11_rep_A_Warfarinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124413477-1876569 09D11_rep_A_Warfarinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hycC_#1_P3D3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (hycC_#1_P3D3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111725179-1871621 10C01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111725179-1871621 10C01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153535758-1577446 Batch5_NCIH1792_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114124559-1874839 11F08_rep_D_(+)_-Levobunolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114124559-1874839 11F08_rep_D_(+)_-Levobunolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082912/raw/15NEGMSMS5_10_15eV.mzML at line 689
Premature end of data in tag binary line 2894, line 2894, column 686712 (15NEGMSMS5_10_15eV.mzML, line 2894)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130454738-1877484 13E03_rep_B_Alfaxaloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130454738-1877484 13E03_rep_B_Alfaxaloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094810/other/MZmine_Result/Positive/138_QC_C1_10eV_pos_CEDIA.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153913003-1577628 Batch6_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_9_P3A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (ctrl_9_P3A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_191_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/485-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112235002-1873597 10B10_rep_D_Levonordefrina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112235002-1873597 10B10_rep_D_Levonordefrina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H6_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-021_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GA11_01_16784.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/PDI-flfl-liver-46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153243569-1577306 Batch4_SW780_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124352056-1862334 03H10_rep_A_Orphenadrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124352056-1862334 03H10_rep_A_Orphenadrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123026857-1875905 08G02_rep_A_Mizolastineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123026857-1875905 08G02_rep_A_Mizolastineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130105505-1863286 04C07_rep_A_Disopyramidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130105505-1863286 04C07_rep_A_Disopyramidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD3_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J10_id_negative.mzML at line 21
index 264 is out of bounds for axis 0 with size 264
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152831293-1577103 Batch3_HT1197_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/004_Nitrate_Day11_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/114_101.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101529850-1869505 07E10_rep_C_Mesoridazine_besylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101529850-1869505 07E10_rep_C_Mesoridazine_besylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C10_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dmsB_P3C3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (dmsB_P3C3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00077185.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152339222-1576862 Batch1_HCC70_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114447062-1875004 12D05_rep_A_Estronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114447062-1875004 12D05_rep_A_Estronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine73cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine73cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007635_032118-0.01Thr3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample220.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_4_B_rep_2_B-B3_1_5831.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124234637-1876488 08D09_rep_D_Xylazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124234637-1876488 08D09_rep_D_Xylazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007495_031618-Unst4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_5_B_rep_3_B-F1_1_5682.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152115579-1867993 05G10_rep_C_Ketoconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152115579-1867993 05G10_rep_C_Ketoconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_B3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/entF_#1_P5H5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (entF_#1_P5H5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092549361-1878894 14E10_rep_B_(S)-(-)-Cycloserinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092549361-1878894 14E10_rep_B_(S)-(-)-Cycloserinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201706111-1882033 16C03_rep_C_Donepezil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201706111-1882033 16C03_rep_C_Donepezil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153601124-1868677 06F01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153601124-1868677 06F01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132958574-1733930 1pool Wound5D 3 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_1_B_rep_4_B-E2_1_5673.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190124103509.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152409396-1576886 Batch2_NCIH2172_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/859.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/eutD_P3C11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (eutD_P3C11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102030965-1869750 07F03_rep_D_Grepafloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102030965-1869750 07F03_rep_D_Grepafloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_09_Blank.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_09_Blank.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_68_Blank.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_68_Blank.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_C3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122253459-1879854 15H10_rep_C_Acetylsalicylic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122253459-1879854 15H10_rep_C_Acetylsalicylic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/699.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082718/ccms_peak/ST000666/EX00376-lipidomics/Raw data/NEG/20141119_Pooled.mzXML at line 689
error parsing attribute name, line 12095, column 5 (20141119_Pooled.mzXML, line 12095)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_73_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_73_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125231362-1876914 12F03_rep_C_S(-)Eticlopride_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125231362-1876914 12F03_rep_C_S(-)Eticlopride_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180822_ES_H3K_batch10_repB_144.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroA_#5_P4B4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (aroA_#5_P4B4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152759433-1577076 Batch5_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092059/ccms_peak/Raw/21.mzML at line 21
index 346 is out of bounds for axis 0 with size 346
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_C7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_C7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/671.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201138527-1881790 16A06_rep_B_Doxapram_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201138527-1881790 16A06_rep_B_Doxapram_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD6_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151348146-1576381 Batch6_RPMI8226_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007608_032118-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091842973-1878561 13F05_rep_D_Sertralineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091842973-1878561 13F05_rep_D_Sertralineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_D2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152252562-1576825 Batch2_NCIH2444_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090481/ccms_peak/Figure 3/Figure 3B/pos_jejunumlumen_KC23.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000090481/ccms_peak/Figure 3/Figure 3B/pos_jejunumlumen_KC23.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152420828-1576895 Batch2_NCIH226_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_E7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sufD_P3D5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (sufD_P3D5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112215673-1921847 3_C3_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112215673-1921847 3_C3_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/580-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-CCM-PA-QC-02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sucA_P3B1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (sucA_P3B1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121715909-1867071 04H10_rep_C_Clofilium_tosylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121715909-1867071 04H10_rep_C_Clofilium_tosylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpBud1_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5G05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET25.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET25.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/Blank4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223848810-1870328 01H03_rep_C_Imipramine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223848810-1870328 01H03_rep_C_Imipramine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100742034-1869134 07C11_rep_A_Cyclizine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100742034-1869134 07C11_rep_A_Cyclizine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD1_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223448449-1870143 01B02_rep_B_Meticranea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223448449-1870143 01B02_rep_B_Meticranea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112822330-1874259 11B11_rep_A_Aminophyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112822330-1874259 11B11_rep_A_Aminophyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD1_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_08P_C4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/002_Urea_Day9_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_128.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2L004B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100619798-1869067 07F10_rep_A_Thiocolchicosidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100619798-1869067 07F10_rep_A_Thiocolchicosidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112602476-1874148 11G10_rep_A_Phthalylsulfathiazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112602476-1874148 11G10_rep_A_Phthalylsulfathiazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114640958-1875090 12G11_rep_A_Stavudinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114640958-1875090 12G11_rep_A_Stavudinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095538/raw/2mecdp_12C_CE40_msAG243_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024761 (2mecdp_12C_CE40_msAG243_Aquity_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123605680-1876178 08G08_rep_C_Folic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123605680-1876178 08G08_rep_C_Folic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190123_ES_H3K_batch15_repA_100.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-qc_med (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114445777-1875003 12H08_rep_A_Deoxycorticosteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114445777-1875003 12H08_rep_A_Deoxycorticosteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mdtM_#2_P6E8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (mdtM_#2_P6E8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_19080521_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_low (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_F7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tdcG_P4B2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (tdcG_P4B2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8F08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample181_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123822306-1876286 08A08_rep_C_Itraconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123822306-1876286 08A08_rep_C_Itraconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydgI_P3F6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (ydgI_P3F6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mepS_P3E10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (mepS_P3E10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201624562-1882002 16A06_rep_C_Doxapram_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201624562-1882002 16A06_rep_C_Doxapram_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L63cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L63cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122728724-1880066 15G02_rep_D_Gatifloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122728724-1880066 15G02_rep_D_Gatifloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GD6_01_11500.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125043577-1876834 12D06_rep_C_Lorglumide_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125043577-1876834 12D06_rep_C_Lorglumide_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12only_Replicate2_Level1_MSMS_neg.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_E9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_58.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112858516-1922202 4_G9_GPR1_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112858516-1922202 4_G9_GPR1_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122820686-1867604 05B05_rep_A_Sulfisoxazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122820686-1867604 05B05_rep_A_Sulfisoxazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_E6_01_12210.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152155686-1576780 Batch1_NCIH1703_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_G4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101434578-1869463 07A03_rep_C_Cefotiam_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101434578-1869463 07A03_rep_C_Cefotiam_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_A12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_QC7.mzXML at line 689
Premature end of data in tag peaks line 17543, line 17547, column 40428 (L_QC7.mzXML, line 17547)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151028942-1924715 3_G9_SNF3_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151028942-1924715 3_G9_SNF3_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E9_id_MSn_positive.mzML at line 21
index 393 is out of bounds for axis 0 with size 393
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD6_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170209_053ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/97/eeefa7c11beee63dd7c56f765e33fd/input_file/SH7_20170209_053ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121427640-1879471 15G07_rep_A_Montelukastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121427640-1879471 15G07_rep_A_Montelukastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113023401-1922236 1_H2_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113023401-1922236 1_H2_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Methylobacterium_LYG001A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_RBC4_NEG.mzXML at line 689
attributes construct error, line 38, column 72 (Person4_RBC4_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_21_Dorsal_skin_EtOH_control_NEG.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_21_Dorsal_skin_EtOH_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/49-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_C8_id_positive.mzML at line 21
index 310 is out of bounds for axis 0 with size 310
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/idnO_#1_P4D3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (idnO_#1_P4D3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD2_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130120032-1877317 13B09_rep_B_Memantine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130120032-1877317 13B09_rep_B_Memantine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_B2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_B2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150037657-1864144 02F10_rep_B_Cefotaxime sodium saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150037657-1864144 02F10_rep_B_Cefotaxime sodium saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P9_id_MSn_negative.mzML at line 21
index 296 is out of bounds for axis 0 with size 296
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case210_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case210_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151208422-1576298 Batch5_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092750009-1878987 14D09_rep_B_Benzylpenicillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092750009-1878987 14D09_rep_B_Benzylpenicillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112549163-1922034 4_H11_GPR1_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112549163-1922034 4_H11_GPR1_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112457997-1874097 10A01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112457997-1874097 10A01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I9_id_MSn_positive.mzML at line 21
index 676 is out of bounds for axis 0 with size 676
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152222413-1576801 Batch2_NCIH441_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170125_033EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b2/cb7f591b825192c53c331f4413ab0d/input_file/SH8_20170125_033EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153717362-1577531 Batch4_977_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM5N002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130403666-1877444 13G01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130403666-1877444 13G01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B12_id_negative.mzML at line 21
index 270 is out of bounds for axis 0 with size 270
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/19072021_Batch07_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folA_P4F7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (folA_P4F7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150704951-1924539 2_G8_RGT2_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150704951-1924539 2_G8_RGT2_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124424777-1862360 03E06_rep_A_Tolfenamic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124424777-1862360 03E06_rep_A_Tolfenamic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_A4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_A4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122333806-1879885 15B05_rep_C_Anethole-trithioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122333806-1879885 15B05_rep_C_Anethole-trithioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/btuF_P3A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (btuF_P3A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112623961-1874165 11A07_rep_A_Trimipramine_maleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112623961-1874165 11A07_rep_A_Trimipramine_maleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B06Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121713151-1879596 15B01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121713151-1879596 15B01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152153360-1868023 05B08_rep_C_Procainamide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152153360-1868023 05B08_rep_C_Procainamide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/79.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/034_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_131_1B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_54.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_blank_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082768/ccms_peak/raw/MTBLS31/032811flupart2SET1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082768/ccms_peak/raw/MTBLS31/032811flupart2SET1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purH_P5D7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (purH_P5D7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/195-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30066 - GI-14-389.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153955599-1577664 Batch7_EKVX_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100820004-1869164 07A10_rep_A_Ceftazidime_pentahydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100820004-1869164 07A10_rep_A_Ceftazidime_pentahydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E3_id.mzML at line 21
index 509 is out of bounds for axis 0 with size 509
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150654501-1924530 2_G2_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150654501-1924530 2_G2_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_124.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210115_AD_90.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113816333-1874687 11C05_rep_C_Benzthiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113816333-1874687 11C05_rep_C_Benzthiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122807216-1875796 08F07_rep_A_Demecarium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122807216-1875796 08F07_rep_A_Demecarium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/Blank13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_E3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI5_4_11_1_880.mzML at line 689
Premature end of data in tag binary line 10183337, line 10183337, column 467228 (50130_microPOTS_Rat_Brain_ROI5_4_11_1_880.mzML, line 10183337)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114112213-1874829 11C10_rep_D_Dimethadioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114112213-1874829 11C10_rep_D_Dimethadioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybbW_#2_P4C3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (ybbW_#2_P4C3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112800784-1874242 11A10_rep_A_Dichlorphenamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112800784-1874242 11A10_rep_A_Dichlorphenamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121032893-1879295 14H06_rep_D_Ronidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121032893-1879295 14H06_rep_D_Ronidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153039040-1577207 Batch3_NCIH661_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124833870-1862674 03G02_rep_B_Norfloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124833870-1862674 03G02_rep_B_Norfloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/426.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125152848-1862833 03E08_rep_C_Tiboloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125152848-1862833 03E08_rep_C_Tiboloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150054109-1864157 02D05_rep_B_Ampicillin trihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150054109-1864157 02D05_rep_B_Ampicillin trihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130021653-1877274 13H05_rep_A_Pancuronium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130021653-1877274 13H05_rep_A_Pancuronium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B8_id_MSn_positive.mzML at line 21
index 534 is out of bounds for axis 0 with size 534
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A9Pa5mm_black_P1-B-7_01_23071.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122915737-1867647 05B11_rep_B_Domperidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122915737-1867647 05B11_rep_B_Domperidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200653828-1881580 16D08_rep_A_Adapaleneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200653828-1881580 16D08_rep_A_Adapaleneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145748560-1864010 02H08_rep_A_Gallamine triethiodideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145748560-1864010 02H08_rep_A_Gallamine triethiodideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I2_id.mzML at line 21
index 548 is out of bounds for axis 0 with size 548
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152437190-1576908 Batch2_NCIH2291_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151105862-1924747 3_H11_SNF3_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151105862-1924747 3_H11_SNF3_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_B3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085480/raw/190627_Irina_OMZ_ETNP18_RerunFractions/mzML/ETNP18_Oxycline_7_C.mzML at line 689
Invalid character: Char 0x0 out of allowed range
, line 24591, column 31 (ETNP18_Oxycline_7_C.mzML, line 24591)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150314194-1924343 1_F5_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150314194-1924343 1_F5_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/allD_P5F4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (allD_P5F4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_A7_id_negative.mzML at line 21
index 205 is out of bounds for axis 0 with size 205
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/plsX_#2_P5C2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (plsX_#2_P5C2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H2_id_negative.mzML at line 21
index 243 is out of bounds for axis 0 with size 243
Error processing file: /data/datasets/server/MassIVE/MSV000082768/ccms_peak/raw/MTBLS31/012411flubatch1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082768/ccms_peak/raw/MTBLS31/012411flubatch1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201030155-1877745 09C02_rep_B_Pranlukastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201030155-1877745 09C02_rep_B_Pranlukastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111337682-1871446 10C04_rep_B_Medrysoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111337682-1871446 10C04_rep_B_Medrysoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBsubR27_5h2b.mzML at line 689
Opening and ending tag mismatch: spectrum line 236900 and scanWindow, line 236902, column 30 (pBsubR27_5h2b.mzML, line 236902)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/902.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ugpC_P4E3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ugpC_P4E3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/811.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MIXEE_20170209_070ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a7/bfe7b86a8170f1ed4936fac21d2bbc/input_file/MIXEE_20170209_070ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152917715-1868364 06G11_rep_A_Ceforanidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152917715-1868364 06G11_rep_A_Ceforanidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD4_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094202/ccms_peak/3DMM_pos_raw/Plate10/P10_G3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_0126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D3_preFOS_2_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_xx1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5E08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/LiLi-18d.mzXML at line 689
Premature end of data in tag msRun line 5, line 1638, column 1 (LiLi-18d.mzXML, line 1638)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_17121406_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S132.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S132.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151138173-1576273 Batch5_PC14PE6_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C11_id_MSn_positive.mzML at line 21
index 421 is out of bounds for axis 0 with size 421
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153236191-1577300 Batch4_A427_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121901498-1879678 15C05_rep_B_Carprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121901498-1879678 15C05_rep_B_Carprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ2_7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.MG1_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lptD_P4G5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (lptD_P4G5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-30d.mzXML at line 689
Premature end of data in tag peaks line 5679, line 5683, column 11766 (YnYn-30d.mzXML, line 5683)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114954184-1875244 12G10_rep_B_(+,-)-Octopamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114954184-1875244 12G10_rep_B_(+,-)-Octopamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180625_ES_H3K_bacth8_repA_118.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125133187-1862817 03B03_rep_C_Etofyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125133187-1862817 03B03_rep_C_Etofyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpE_P4F11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (glpE_P4F11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K8_id_MSn_negative.mzML at line 21
index 355 is out of bounds for axis 0 with size 355
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124207980-1862251 03D05_rep_A_Nimesulidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124207980-1862251 03D05_rep_A_Nimesulidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124238097-1862275 03H03_rep_A_Scopolamin-N-oxide_hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124238097-1862275 03H03_rep_A_Scopolamin-N-oxide_hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153549790-1868668 06G01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153549790-1868668 06G01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122619187-1880012 15E02_rep_D_Clofibratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122619187-1880012 15E02_rep_D_Clofibratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I9_id_MSn_negative.mzML at line 21
index 341 is out of bounds for axis 0 with size 341
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223400131-1870106 01E11_rep_B_Lidocaine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223400131-1870106 01E11_rep_B_Lidocaine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151238934-1576323 Batch5_NCIH1755_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151155304-1576287 Batch5_NCIH446_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130322246-1877412 13C04_rep_B_Dimaprit_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130322246-1877412 13C04_rep_B_Dimaprit_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112706746-1874199 11C11_rep_A_Ethaverine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112706746-1874199 11C11_rep_A_Ethaverine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoF_P4H1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (nuoF_P4H1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P6_id_MSn_positive.mzML at line 21
index 382 is out of bounds for axis 0 with size 382
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113056947-1874374 11H05_rep_B_Theobrominea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113056947-1874374 11H05_rep_B_Theobrominea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180426_ES_H3K_batch6_repD_45.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/btuD_P5D11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (btuD_P5D11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_E9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mtlD_#2_P4G11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (mtlD_#2_P4G11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G11_id_MSn_negative.mzML at line 21
index 299 is out of bounds for axis 0 with size 299
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151338883-1924879 4_E10_SNF3_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151338883-1924879 4_E10_SNF3_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075408.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101527282-1869503 07F01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101527282-1869503 07F01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150248462-1924322 1_F10_RGT2_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150248462-1924322 1_F10_RGT2_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L20_id_MSn_positive.mzML at line 21
index 701 is out of bounds for axis 0 with size 701
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151908957-1576647 Batch5_COLO205_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100414105-1868967 06C07_rep_D_Buflomedil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100414105-1868967 06C07_rep_D_Buflomedil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151835425-1576619 Batch7_NCIH1693_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082795/ccms_peak/raw/MTBLS428/mtab_tsq_cara_020615_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082795/ccms_peak/raw/MTBLS428/mtab_tsq_cara_020615_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125950006-1877251 13A05_rep_A_Methacycline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125950006-1877251 13A05_rep_A_Methacycline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/clcA_#1_P4B9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (clcA_#1_P4B9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD2_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_redo_MSMS_2022_neg-0010.mzML at line 689
Premature end of data in tag binary line 23063, line 23063, column 1872649 (pooled_redo_MSMS_2022_neg-0010.mzML, line 23063)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_A6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B14_id.mzML at line 21
index 526 is out of bounds for axis 0 with size 526
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_115.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_C7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_dilute_190131192611.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088138/raw/210916_tanaka02.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101338203-1869418 07C10_rep_B_Bromperidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101338203-1869418 07C10_rep_B_Bromperidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122846299-1880127 15F07_rep_D_Benztropine_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122846299-1880127 15F07_rep_D_Benztropine_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fecB_P4G3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (fecB_P4G3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_MICU_118_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_363.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/370.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201251923-1881845 16G04_rep_B_Tolterodine_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201251923-1881845 16G04_rep_B_Tolterodine_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092244674-1878750 14C06_rep_A_Milrinonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092244674-1878750 14C06_rep_A_Milrinonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1095-B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090651/raw/021722_SH_BW10_45-60eV.mzXML at line 255
Error -3 while decompressing data: invalid distance too far back
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113152414-1922311 1_A5_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113152414-1922311 1_A5_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145932994-1864094 02F05_rep_B_Diltiazem hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145932994-1864094 02F05_rep_B_Diltiazem hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113603589-1874581 11F02_rep_C_Paroxetine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113603589-1874581 11F02_rep_C_Paroxetine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_88.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112733992-1922126 4_C8_GPR1_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112733992-1922126 4_C8_GPR1_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153902226-1577619 Batch7_MIAPACA2_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151451629-1576434 Batch6_NCIH1155_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_105.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_14_Liver_CMC_control_POS.mzXML at line 689
attributes construct error, line 38, column 91 (Mouse_14_Liver_CMC_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111504076-1921091 1_B10_GAP1_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111504076-1921091 1_B10_GAP1_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_blank_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_B7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151503992-1576444 Batch6_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD1_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_32_RIN_20.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_32_RIN_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111917949-1872576 10B09_rep_C_Folinic_acid_calcium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111917949-1872576 10B09_rep_C_Folinic_acid_calcium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122001621-1867201 04F07_rep_C_Acemetacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122001621-1867201 04F07_rep_C_Acemetacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113831950-1922657 3_D11_STE2_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113831950-1922657 3_D11_STE2_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180915_ES_H3K_batch2_repD_17.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI4b_4_21_1_890.mzML at line 689
Premature end of data in tag binary line 5009820, line 5009820, column 669532 (50130_microPOTS_Rat_Brain_ROI4b_4_21_1_890.mzML, line 5009820)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/002_Urea_Day14_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007514_031618-0.01Thr4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152528286-1576950 Batch2_SW900_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_0124_190124233536.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_06_1019_prot_54_IMS_15Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151202440-1576293 Batch5_NCIH446_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124403311-1862343 03F05_rep_A_Gemfibrozila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124403311-1862343 03F05_rep_A_Gemfibrozila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125906429-1877217 13C06_rep_A_Guaiacola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125906429-1877217 13C06_rep_A_Guaiacola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094756/peak/02_TO_mPlasma_CROT_main_BOTTOM_neg_HILIC.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151628359-1925018 4_G5_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151628359-1925018 4_G5_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100457473-1869001 06F11_rep_D_Dinoprost_trometamola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100457473-1869001 06F11_rep_D_Dinoprost_trometamola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate27/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K17_id_MSn_negative.mzML at line 21
index 366 is out of bounds for axis 0 with size 366
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_64_RIN_40.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_64_RIN_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151249149-1924836 3_A11_SNF3_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151249149-1924836 3_A11_SNF3_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_A9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OAD4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E20_id_negative.mzML at line 21
index 246 is out of bounds for axis 0 with size 246
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151106336-1865111 02D11_rep_D_Triamcinoloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151106336-1865111 02D11_rep_D_Triamcinoloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/dhna_menA_P5F9_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (dhna_menA_P5F9_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GD8_01_16825.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4B06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pyrE_P6G4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (pyrE_P6G4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153654671-1868721 06A11_rep_C_Amphotericin_Bb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153654671-1868721 06A11_rep_C_Amphotericin_Bb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_26_NOR_53.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_26_NOR_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150840707-1924622 2_B8_RGT2_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150840707-1924622 2_B8_RGT2_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpMat1_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/btuC_#1_P5D4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (btuC_#1_P5D4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180625_ES_H3K_bacth8_repA_105.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_C10_id_MSn_positive.mzML at line 21
index 479 is out of bounds for axis 0 with size 479
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_7_Liver_Ma_control_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_7_Liver_Ma_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114541913-1875045 12B08_rep_A_Pipemidic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114541913-1875045 12B08_rep_A_Pipemidic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152322851-1576849 Batch2_NCIH2444_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_C4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000096669/ccms_peak/3_19_2022_1003_Michael_leming_liver_neg-0.0043.mzML at line 689
Premature end of data in tag binary line 83158, line 83158, column 1828872 (3_19_2022_1003_Michael_leming_liver_neg-0.0043.mzML, line 83158)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121432158-1866943 04D03_rep_B_Indomethacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121432158-1866943 04D03_rep_B_Indomethacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153021923-1868412 06F08_rep_A_Meclozine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153021923-1868412 06F08_rep_A_Meclozine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD5_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/143-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111801390-1872035 10G08_rep_C_Merbrominb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111801390-1872035 10G08_rep_C_Merbrominb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNH189_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD3_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153301886-1577321 Batch4_NCIH2009_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_E7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_D6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/652.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/237.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_MICU_318_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151831732-1576616 Batch7_RXF393_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6E01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114043512-1874806 11E04_rep_D_Nafcillin_sodium_salt_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114043512-1874806 11E04_rep_D_Nafcillin_sodium_salt_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ12181426.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130356266-1877438 13A10_rep_B_Darifenacin_hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130356266-1877438 13A10_rep_B_Darifenacin_hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J13_id_MSn_positive.mzML at line 21
index 714 is out of bounds for axis 0 with size 714
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/971.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1333.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1333.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_40_AC+_48.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample005_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190128092846.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152802996-1577079 Batch3_EPLC272H_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210120_AD_91.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130057252-1863279 04F05_rep_A_Pimethixene_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130057252-1863279 04F05_rep_A_Pimethixene_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122143217-1867283 04F05_rep_D_Pimethixene_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122143217-1867283 04F05_rep_D_Pimethixene_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201410558-1877906 09A07_rep_C_Oxiconazole_Nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201410558-1877906 09A07_rep_C_Oxiconazole_Nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124931638-1876780 12B11_rep_C_Methylatropine_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124931638-1876780 12B11_rep_C_Methylatropine_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153003094-1577181 Batch3_SCABER_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223744787-2227622 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007658_032118-1Thr4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125233583-1862866 03A11_rep_C_Phenelzine_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125233583-1862866 03A11_rep_C_Phenelzine_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124857746-1862693 03B01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124857746-1862693 03B01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223840735-2227671 PAT43.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153706733-1577522 Batch5_HCT15_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121447580-1866955 04B10_rep_B_Ethacrynic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121447580-1866955 04B10_rep_B_Ethacrynic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1456.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1456.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151544527-1924981 4_H5_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151544527-1924981 4_H5_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122047920-1867238 04D04_rep_C_Cortisonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122047920-1867238 04D04_rep_C_Cortisonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223846341-1870326 01G04_rep_C_Nifedipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223846341-1870326 01G04_rep_C_Nifedipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_126a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153315747-1868546 06D05_rep_B_Cefadroxila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153315747-1868546 06D05_rep_B_Cefadroxila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw_Baseline_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092902047-1879044 14A09_rep_C_Piperacetazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092902047-1879044 14A09_rep_C_Piperacetazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122517149-1879964 15C06_rep_C_Celecoxiba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122517149-1879964 15C06_rep_C_Celecoxiba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170209_057ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/72/f620fe8617481ddac4d2e02f8ba038/input_file/MMW3_20170209_057ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151918552-1867898 05E10_rep_C_Meloxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151918552-1867898 05E10_rep_C_Meloxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112815513-1922163 4_E3_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112815513-1922163 4_E3_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200657676-1881583 16H07_rep_A_Milnacipran_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200657676-1881583 16H07_rep_A_Milnacipran_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152857077-1577125 Batch3_HT1197_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/ALKANES_10PPM_3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1363.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1363.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152044919-1576724 Batch1_HCC1937_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201624662-1878003 09B03_rep_C_Picrotoxininb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201624662-1878003 09B03_rep_C_Picrotoxininb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_17121408_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET32.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET32.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/564-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD6_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123006055-1867687 05D05_rep_B_Clopamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123006055-1867687 05D05_rep_B_Clopamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case193_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case193_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113839373-1874706 11A02_rep_C_Carbinoxamine_maleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113839373-1874706 11A02_rep_C_Carbinoxamine_maleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/102-4_MsMs_25min_50eV_GE3_01_4127.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152609859-1868218 05C02_rep_D_Furosemidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152609859-1868218 05C02_rep_D_Furosemidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_133_2C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152532951-1576954 Batch2_RERFLCSQ1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_A7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_98.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_4_B_rep_4_B-D7_1_5669.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlC3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlC3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-069_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/g6p_pgi_P6E4_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024914 (g6p_pgi_P6E4_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130243633-1877382 13F02_rep_B_Flucloxacillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130243633-1877382 13F02_rep_B_Flucloxacillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ddpF_#5_P4A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (ddpF_#5_P4A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122757030-1867585 05B08_rep_A_Procainamide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122757030-1867585 05B08_rep_A_Procainamide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murJ_P3G12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (murJ_P3G12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_87.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG010C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I6_id_MSn_positive.mzML at line 21
index 539 is out of bounds for axis 0 with size 539
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_71.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190118_ES_H3K_batch14_repB_201.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112823179-1922170 4_A1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112823179-1922170 4_A1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_23.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_23.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/260.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075318.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130540410-1877520 13H11_rep_C_Pyrvinium_pamoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130540410-1877520 13H11_rep_C_Pyrvinium_pamoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB6A01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_G8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_E8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD1_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151951467-1576682 Batch1_BT549_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123128855-1867749 05E03_rep_B_Betamethasoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123128855-1867749 05E03_rep_B_Betamethasoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125800196-1877166 13G06_rep_A_Letrozoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125800196-1877166 13G06_rep_A_Letrozoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114005897-1922741 3_D2_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114005897-1922741 3_D2_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122855136-1880134 15G04_rep_D_Gemcitabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122855136-1880134 15G04_rep_D_Gemcitabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200716713-1881597 16H05_rep_A_Ceftibutena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200716713-1881597 16H05_rep_A_Ceftibutena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_D1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113255787-1874468 11G11_rep_B_Luteolina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113255787-1874468 11G11_rep_B_Luteolina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-blank4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-blank4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153134867-1577251 Batch4_NCIH2126_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223242649-1870047 01E05_rep_B_Isoxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223242649-1870047 01E05_rep_B_Isoxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d8_279_lipid__Neg_17Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 47208, column 1 (SysVirol_IFL001_1918_d8_279_lipid__Neg_17Sep13_13-07-01.mzXML, line 47208)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD1_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/468-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I8_id_MSn_positive.mzML at line 21
index 668 is out of bounds for axis 0 with size 668
Error processing file: /data/datasets/server/MassIVE/MSV000094202/ccms_peak/3DMM_pos_raw/Plate1and2/P2_A8.mzML at line 21
index 714 is out of bounds for axis 0 with size 714
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152745033-1577064 Batch1_769P_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152549981-1576968 Batch2_RERFLCSQ1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_55.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_55.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153449198-1868620 06D03_rep_C_Corticosteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153449198-1868620 06D03_rep_C_Corticosteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B07Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153001916-1577180 Batch3_SCABER_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124824064-1876730 12G05_rep_C_Phenoxybenzamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124824064-1876730 12G05_rep_C_Phenoxybenzamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-164_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150027105-1864136 02H09_rep_B_Neomycin sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150027105-1864136 02H09_rep_B_Neomycin sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_G6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2C09P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/562-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0029_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0029_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172647127-1889905 Nb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130402447-1877443 13G01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130402447-1877443 13G01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_211.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223852131-2227681 PAT41.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_A6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LEA1_40EV_RA8_01_22694.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152400379-1868119 05C08_rep_D_Thioguanosineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152400379-1868119 05C08_rep_D_Thioguanosineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_B2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yiaN_P3C4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (yiaN_P3C4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A6_id_MSn_positive_20240408141238.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153916509-1577631 Batch7_NCIH441_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007661_032118-1Thr6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_A10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122848256-1875828 08H02_rep_A_Alendronate_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122848256-1875828 08H02_rep_A_Alendronate_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW5_20170209_023ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/6b/b45630d30ab9036f3432fc75801ca0/input_file/MMW5_20170209_023ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person19_RBC_elder_POS.mzXML at line 689
attributes construct error, line 41, column 81 (Person19_RBC_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L5cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L5cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7D03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_0124.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/argsuc_argH_P5H4_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (argsuc_argH_P5H4_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121634173-1879566 15F08_rep_A_Vecuronium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121634173-1879566 15F08_rep_A_Vecuronium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/oppA_#3_P4D12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (oppA_#3_P4D12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210328_AD_69.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2D02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ttdT_P3E2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (ttdT_P3E2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222946234-1869915 01C05_rep_A_Norethynodrela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222946234-1869915 01C05_rep_A_Norethynodrela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNR698_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S65.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S65.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114148461-1922832 4_A3_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114148461-1922832 4_A3_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I17_id_negative.mzML at line 21
index 252 is out of bounds for axis 0 with size 252
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_H7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/003_Ammonia_Day0_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113157027-1874421 11H01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113157027-1874421 11H01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET33.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET33.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A3Bs5mm_black_P1-A-5_01_23056.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101143810-1869326 07G09_rep_B_Chloroquine_diphosphateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101143810-1869326 07G09_rep_B_Chloroquine_diphosphateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S01_dilute.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130557729-1877534 13G02_rep_C_Isradipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130557729-1877534 13G02_rep_C_Isradipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201728417-1878051 09E07_rep_C_Tigecyclineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201728417-1878051 09E07_rep_C_Tigecyclineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201254402-1877850 09A09_rep_B_Nilvadipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201254402-1877850 09A09_rep_B_Nilvadipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150649607-1864911 02B01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150649607-1864911 02B01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA22.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151244803-1576328 Batch5_HCC1187_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_H6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_H6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/umpH_P3D4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (umpH_P3D4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/405.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC10_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/blank_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybcF_P3A3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (ybcF_P3A3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_12_RIN_30.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_12_RIN_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5B01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1K002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114133128-1922818 4_F5_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114133128-1922818 4_F5_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122926072-1875858 08E05_rep_A_Butenafine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122926072-1875858 08E05_rep_A_Butenafine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1138.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152209525-1868035 05G06_rep_D_Mitoxantrone_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152209525-1868035 05G06_rep_D_Mitoxantrone_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_D9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/603.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ccmE_#2_P5B6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (ccmE_#2_P5B6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125429368-1877004 12G08_rep_D_Prazosin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125429368-1877004 12G08_rep_D_Prazosin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145653015-1863965 02G09_rep_A_Canrenoic acid potassium salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145653015-1863965 02G09_rep_A_Canrenoic acid potassium salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/menD_P3C1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (menD_P3C1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202034958-1878194 09E03_rep_D_Secnidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202034958-1878194 09E03_rep_D_Secnidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151740334-1576574 Batch3_NCIH2228_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/375.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114232123-1922871 4_B7_STE2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114232123-1922871 4_B7_STE2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person06_blood_elder_POS.mzXML at line 689
attributes construct error, line 41, column 101 (Person06_blood_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125439970-1877012 12C10_rep_D_Nabumetoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125439970-1877012 12C10_rep_D_Nabumetoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151704526-1576544 Batch7_SKMES1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123625887-1876194 08A03_rep_C_Mevastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123625887-1876194 08A03_rep_C_Mevastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/006_Ammonia_Day2_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/DEX-plasma-VLDL-9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case244_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case244_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_B6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_76.mzXML at line 689
Premature end of data in tag peaks line 19402, line 19406, column 11843 (20121114_76.mzXML, line 19406)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152950116-1577170 Batch3_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case247_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case247_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_66_RIN_47.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_66_RIN_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dfp_#5_P3D1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (dfp_#5_P3D1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample061_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_cc7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113512158-1922485 2_H7_IZH2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113512158-1922485 2_H7_IZH2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike5_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E18_id_MSn_positive.mzML at line 21
index 592 is out of bounds for axis 0 with size 592
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201545714-1877974 09B10_rep_C_6-Furfurylaminopurinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201545714-1877974 09B10_rep_C_6-Furfurylaminopurinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091760/raw/TC3_pellet.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1106.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fldA_P3A3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (fldA_P3A3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_45_CNR_51.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_45_CNR_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112031415-1873019 10H04_rep_C_Cloperastine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112031415-1873019 10H04_rep_C_Cloperastine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_245.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arnT_P3F4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (arnT_P3F4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092004487-1878625 13A06_rep_D_Floxuridineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092004487-1878625 13A06_rep_D_Floxuridineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223739073-2227617 PAT47.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_17091608_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112244280-1921872 3_D1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112244280-1921872 3_D1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/826.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092444728-1878843 14C04_rep_B_Naftifine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092444728-1878843 14C04_rep_B_Naftifine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151231649-1576317 Batch5_NCIH2135_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M21_id_MSn_positive.mzML at line 21
index 432 is out of bounds for axis 0 with size 432
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114353256-1874960 12E11_rep_A_Protriptyline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114353256-1874960 12E11_rep_A_Protriptyline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/140_114_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_A5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114411411-1874975 12H09_rep_A_Urosiolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114411411-1874975 12H09_rep_A_Urosiolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150525912-1864847 02D05_rep_C_Ampicillin trihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150525912-1864847 02D05_rep_C_Ampicillin trihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/g3pg_ugpQ_P5C9_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 634, column 10007063 (g3pg_ugpQ_P5C9_Aquity_neg.mzXML, line 634)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201034167-1881742 16G09_rep_B_Palonosetron_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201034167-1881742 16G09_rep_B_Palonosetron_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122659413-1867538 05B06_rep_A_Zaprinasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122659413-1867538 05B06_rep_A_Zaprinasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200838760-1881657 16B09_rep_A_Altrenogesta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200838760-1881657 16B09_rep_A_Altrenogesta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114032381-1874797 11C08_rep_D_Propantheline_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114032381-1874797 11C08_rep_D_Propantheline_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2C12_160526205924.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113643547-1922563 2_A11_IZH2_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113643547-1922563 2_A11_IZH2_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150804003-1864969 02C09_rep_D_Nomifensine maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150804003-1864969 02C09_rep_D_Nomifensine maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hD1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hD1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122754587-1875786 08G08_rep_A_Folic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122754587-1875786 08G08_rep_A_Folic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153921295-1577635 Batch6_K562_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102125597-1869795 07H02_rep_D_Hexetidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102125597-1869795 07H02_rep_D_Hexetidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaE_P3C2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (paaE_P3C2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114233466-1874895 11A10_rep_D_Dichlorphenamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114233466-1874895 11A10_rep_D_Dichlorphenamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124225506-1862265 03E03_rep_A_Tiratricol,_3,3',5-triiodothyroacetic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124225506-1862265 03E03_rep_A_Tiratricol,_3,3',5-triiodothyroacetic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/adiC_#1_P5F2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (adiC_#1_P5F2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111423880-1921057 1_B5_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111423880-1921057 1_B5_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/690.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_H_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_H_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112856549-1874286 11F02_rep_A_Paroxetine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112856549-1874286 11F02_rep_A_Paroxetine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBacsR37_5h1a.mzML at line 689
Specification mandates value for attribute unitAccessioniUNkjotDRgmNQ8h0jkMTbY9DzZqPQ, line 59787, column 141 (pBacsR37_5h1a.mzML, line 59787)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122605014-1867494 05D02_rep_A_Chlorthalidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122605014-1867494 05D02_rep_A_Chlorthalidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-22d.mzXML at line 689
Premature end of data in tag msRun line 5, line 878, column 1 (YnYn-22d.mzXML, line 878)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHJ02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200813120-1881638 16F04_rep_A_Terbinafineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200813120-1881638 16F04_rep_A_Terbinafineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092556033-1878899 14A08_rep_B_Piretanideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092556033-1878899 14A08_rep_B_Piretanideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_C2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wcaH_P4B2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (wcaH_P4B2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_23_Blood_EtOH_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_23_Blood_EtOH_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122722943-1867557 05H11_rep_A_Hesperidin_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122722943-1867557 05H11_rep_A_Hesperidin_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample065.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBmegR224h2b.mzML at line 689
Unescaped '<' not allowed in attributes values, line 16967, column 7425 (pBmegR224h2b.mzML, line 16967)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample222.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125533663-1877053 12G07_rep_D_Altretaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125533663-1877053 12G07_rep_D_Altretaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample158.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009612_IBD200_E16_A11.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case43_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case43_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/871.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201633930-1878010 09G01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201633930-1878010 09G01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/proC_P3D2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (proC_P3D2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111554534-1921520 1_H7_GAP1_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111554534-1921520 1_H7_GAP1_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/COR2_40EV_RA1_01_22548.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113314379-1874483 11A06_rep_B_Piromidic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113314379-1874483 11A06_rep_B_Piromidic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xylH_P3B4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (xylH_P3B4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1324.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1324.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130012811-1877268 13D11_rep_A_Lymecyclineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130012811-1877268 13D11_rep_A_Lymecyclineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_H7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8E05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124555793-1862548 03A08_rep_B_Riluzole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124555793-1862548 03A08_rep_B_Riluzole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D19_id_MSn_positive.mzML at line 21
index 457 is out of bounds for axis 0 with size 457
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113339758-1922404 2_F5_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113339758-1922404 2_F5_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007651_032118-1Thr1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081765.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101142543-1869325 07G09_rep_B_Chloroquine_diphosphatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101142543-1869325 07G09_rep_B_Chloroquine_diphosphatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150157552-1864687 02A03_rep_B_Fulvestrantb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150157552-1864687 02A03_rep_B_Fulvestrantb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/flc_P4F2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (flc_P4F2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS302P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114749370-1875143 12H05_rep_B_Tyloxapolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114749370-1875143 12H05_rep_B_Tyloxapolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8G04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_219.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202244549-1878296 10H11_rep_A_Amrinonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202244549-1878296 10H11_rep_A_Amrinonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150559681-1864873 02C05_rep_C_Famotidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150559681-1864873 02C05_rep_C_Famotidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD2_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125657697-1863080 03B02_rep_D_Tranexamic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125657697-1863080 03B02_rep_D_Tranexamic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.gris_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K15_id_MSn_positive.mzML at line 21
index 555 is out of bounds for axis 0 with size 555
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mltC_P3A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (mltC_P3A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170127_017ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/46/46ff6c20f8bbe98f902b172ac82c2b/input_file/MMW3_20170127_017ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C4_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc1_T4_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222957128-1869923 01D01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222957128-1869923 01D01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folK_P4F4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (folK_P4F4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_095a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroK_P4B8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (aroK_P4B8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ4_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153949630-1577659 Batch7_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8C18.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122155818-1867293 04G04_rep_D_Telenzepine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122155818-1867293 04G04_rep_D_Telenzepine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/261.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114028725-1874794 11C07_rep_D_Oxalamine_citrate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114028725-1874794 11C07_rep_D_Oxalamine_citrate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_plasma_1h_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer3_plasma_1h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc2_T0_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_A6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_E7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180824_ES_H3K_batch10_repC_142.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152651304-1577019 Batch2_NCIH292_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113513175-1874541 11G06_rep_C_Simvastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113513175-1874541 11G06_rep_C_Simvastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K19_id_MSn_negative.mzML at line 21
index 369 is out of bounds for axis 0 with size 369
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_04.mzXML at line 689
Premature end of data in tag peaks line 20133, line 20137, column 3654 (20121114_04.mzXML, line 20137)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083185.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/004_Nitrate_Day7_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201032737-1881741 16G09_rep_B_Palonosetron_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201032737-1881741 16G09_rep_B_Palonosetron_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_G2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_134.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_E5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125156650-1862836 03D10_rep_C_Prilocaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125156650-1862836 03D10_rep_C_Prilocaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0048_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0048_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_04_leg_muscle_RESV_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_04_leg_muscle_RESV_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100207255-1868867 06F08_rep_D_Meclozine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100207255-1868867 06F08_rep_D_Meclozine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysQ_#1_P5F1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (cysQ_#1_P5F1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153022444-1577195 Batch3_647V_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Column2_test_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113721315-1874643 11H03_rep_C_Iopromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113721315-1874643 11H03_rep_C_Iopromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw6_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/citT_P3A8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (citT_P3A8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_159.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4B08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_446_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122901704-1867636 05E06_rep_A_Brinzolamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122901704-1867636 05E06_rep_A_Brinzolamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112517215-1922006 3_C8_GPR1_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112517215-1922006 3_C8_GPR1_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094756/peak/02_TO_mPlasma_CROT_main_TOP_neg_MidNorm.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/527-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD4_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_A6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125846609-1877202 13D01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125846609-1877202 13D01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150628906-1924508 2_G9_RGT2_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150628906-1924508 2_G9_RGT2_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sthA_#1_P5C1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (sthA_#1_P5C1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151527930-1576463 Batch7_HARA_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093225339-1879201 14E10_rep_C_(S)-(-)-Cycloserineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093225339-1879201 14E10_rep_C_(S)-(-)-Cycloserineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GC12_01_11492.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125537259-1863015 03G01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125537259-1863015 03G01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112226019-1873590 10E03_rep_D_Sulfapyridineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112226019-1873590 10E03_rep_D_Sulfapyridineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180915_ES_H3K_batch2_repA_26.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122904773-1875841 08G03_rep_A_Amisulprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122904773-1875841 08G03_rep_A_Amisulprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD2_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210923_LKM_beads_timecourse_60min_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-CCM-PA-QC-18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102120624-1869791 07A07_rep_D_Colistin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102120624-1869791 07A07_rep_D_Colistin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_16_RIN_30.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_16_RIN_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_100.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_081b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S24.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S24.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B6_id_MSn_negative.mzML at line 21
index 272 is out of bounds for axis 0 with size 272
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB4G05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150713962-1924547 2_C8_RGT2_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150713962-1924547 2_C8_RGT2_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150038952-1864145 02D07_rep_B_Naltrexone hydrochloride dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150038952-1864145 02D07_rep_B_Naltrexone hydrochloride dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I3_id_MSn_positive.mzML at line 21
index 553 is out of bounds for axis 0 with size 553
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBmegR231_5h3b.mzML at line 689
Specification mandates value for attribute acce, line 99071, column 39 (pBmegR231_5h3b.mzML, line 99071)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007692_032218-5CRP2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample043.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gdhA_P3D11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (gdhA_P3D11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080965/peak/blanc_17.mzML at line 689
Specification mandates value for attribute c, line 4146, column 21 (blanc_17.mzML, line 4146)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122837549-1867617 05D08_rep_A_Amoxicillinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122837549-1867617 05D08_rep_A_Amoxicillinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009631_IBD200_E17_A11.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaE_P3C2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (paaE_P3C2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/687.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112055754-1873038 10G06_rep_C_Dicumarola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112055754-1873038 10G06_rep_C_Dicumarola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153453834-1577412 Batch4_NCIH810_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V1_EDTAk2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdpA_#2_P4G5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (kdpA_#2_P4G5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152816022-1577090 Batch3_A498_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_110.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yjbB_P3D7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (yjbB_P3D7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151043411-1865093 02D05_rep_D_Ampicillin trihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151043411-1865093 02D05_rep_D_Ampicillin trihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152146755-1576773 Batch2_NCIH2170_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaS_P3A8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (waaS_P3A8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_08P_A10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078891/ccms_peak/massive_cyanos/EH_2014_05_19_KO+N_secreted.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150329436-1924356 1_B2_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150329436-1924356 1_B2_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092434425-1878835 14G10_rep_A_Rifabutinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092434425-1878835 14G10_rep_A_Rifabutinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_57.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike6_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/16032021_Batch06_QC_ 3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E5_id_MSn_negative.mzML at line 21
index 343 is out of bounds for axis 0 with size 343
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201001202-1877724 09E03_rep_B_Secnidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201001202-1877724 09E03_rep_B_Secnidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153630812-1577492 Batch5_A704_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-blank (6).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201118107-1877780 09G03_rep_B_Succinylsulfathiazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201118107-1877780 09G03_rep_B_Succinylsulfathiazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007543_031618-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150620643-1864889 02H08_rep_C_Gallamine triethiodideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150620643-1864889 02H08_rep_C_Gallamine triethiodideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122327359-1879880 15H01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122327359-1879880 15H01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122320355-1867361 04A01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122320355-1867361 04A01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123700177-1876221 08H01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123700177-1876221 08H01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113415828-1922436 2_G10_IZH2_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113415828-1922436 2_G10_IZH2_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210308_AD_48.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control188_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control188_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/oppD_P4E9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (oppD_P4E9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153652406-1577510 Batch4_RT4_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170207_069EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/2c/b6242eba76c6040fa37aecb6ccbcf6/input_file/SH10_20170207_069EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007696_032218-5CRP3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTH009.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091648692-1878470 13C09_rep_D_Norgestimatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091648692-1878470 13C09_rep_D_Norgestimatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093018331-1879103 14C08_rep_C_Ticarcillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093018331-1879103 14C08_rep_C_Ticarcillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007529_031618-1Thr2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130348305-1877432 13G10_rep_B_Risperidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130348305-1877432 13G10_rep_B_Risperidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121258550-1879404 14C02_rep_D_Phensuximidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121258550-1879404 14C02_rep_D_Phensuximidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153234957-1577299 Batch5_OVCAR5_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152657151-1577024 Batch1_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/004_Soil_WaterIntra_3_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G12Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_H9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122646942-1867528 05F01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122646942-1867528 05F01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ilvI_P3G9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (ilvI_P3G9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152122996-1576754 Batch1_HCC1937_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223752480-1870284 01F03_rep_C_Carbamazepineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223752480-1870284 01F03_rep_C_Carbamazepineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223543306-1870185 01C02_rep_B_Sulfaphenazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223543306-1870185 01C02_rep_B_Sulfaphenazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpMat3_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemC_P6B3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (hemC_P6B3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1025.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153101379-1577224 Batch3_SKMEL5_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115032067-1875275 12A07_rep_B_Clioquinolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115032067-1875275 12A07_rep_B_Clioquinolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/SOD2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202514155-1878414 10D11_rep_A_Pipenzolate_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202514155-1878414 10D11_rep_A_Pipenzolate_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152925437-1868370 06H06_rep_A_Brompheniramine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152925437-1868370 06H06_rep_A_Brompheniramine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Ruegeria_mobilis_F1926_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007639_032118-0.01Thr4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124243240-1876495 08A03_rep_D_Mevastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124243240-1876495 08A03_rep_D_Mevastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121106208-1879320 14E04_rep_D_Isosorbide_mononitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121106208-1879320 14E04_rep_D_Isosorbide_mononitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200624616-1881558 16E03_rep_A_Anagrelideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200624616-1881558 16E03_rep_A_Anagrelideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GF1_01_17206.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.afg_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201942384-1882155 16E07_rep_D_Enalaprilat_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201942384-1882155 16E07_rep_D_Enalaprilat_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201901281-1882123 16G07_rep_D_Alosetron_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201901281-1882123 16G07_rep_D_Alosetron_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111825148-1921650 2_E9_GAP1_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111825148-1921650 2_E9_GAP1_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_82.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151345833-1924885 4_C2_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151345833-1924885 4_C2_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Pool_6_B-A2_1_5506.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121746317-1879621 15H04_rep_B_Formoterol_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121746317-1879621 15H04_rep_B_Formoterol_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_13_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix9_160601172059.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170127_023ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b7/51663bec9d6c98d25d2e2bd37c9369/input_file/SH9_20170127_023ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GG5_01_11722.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S3cells_5_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111601014-1871556 10B07_rep_B_Cefazolin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111601014-1871556 10B07_rep_B_Cefazolin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124455019-1876603 09E11_rep_A_Irinotecan_hydrochloride_trihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124455019-1876603 09E11_rep_A_Irinotecan_hydrochloride_trihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Blank_pesticide_Swabs_170405200658.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_3151_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_165.mzXML at line 689
Premature end of data in tag peaks line 20337, line 20341, column 3656 (20121114_165.mzXML, line 20341)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009526_IBD200_E11_B8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152830126-1577102 Batch3_HT1197_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/925.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125355330-1862932 03E03_rep_D_Tiratricol,_3,3',5-triiodothyroacetic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125355330-1862932 03E03_rep_D_Tiratricol,_3,3',5-triiodothyroacetic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ04241533.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gsk_P3H10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (gsk_P3H10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101536577-1869510 07D08_rep_C_Nystatineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101536577-1869510 07D08_rep_C_Nystatineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_QC_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123313799-1876039 08D05_rep_B_Diclofenac_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123313799-1876039 08D05_rep_B_Diclofenac_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case210_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case210_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111857788-1921678 2_E7_GAP1_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111857788-1921678 2_E7_GAP1_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O3_id_MSn_negative.mzML at line 21
index 366 is out of bounds for axis 0 with size 366
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cadB_P4D2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (cadB_P4D2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/335.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD4_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_G6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD2_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_A9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GA7_01_11620.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/TM-plasma-VLDL-10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123559277-1876173 08H06_rep_C_Aceclidine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123559277-1876173 08H06_rep_C_Aceclidine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_C2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007483_031618-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_C4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C12_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201205207-1877814 09C04_rep_B_Zileutona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201205207-1877814 09C04_rep_B_Zileutona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112251055-1921878 3_F11_GPR1_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112251055-1921878 3_F11_GPR1_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L65.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L65.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F1_id_MSn_positive.mzML at line 21
index 368 is out of bounds for axis 0 with size 368
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_C8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A21_id_MSn_negative.mzML at line 21
index 220 is out of bounds for axis 0 with size 220
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125517565-1877041 12E11_rep_D_Protriptyline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125517565-1877041 12E11_rep_D_Protriptyline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_63_AC+_49.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_C5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD2_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111905050-1872566 10E06_rep_C_Ethoxyquinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111905050-1872566 10E06_rep_C_Ethoxyquinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I13_id_MSn_positive.mzML at line 21
index 540 is out of bounds for axis 0 with size 540
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2C05Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113649470-1922568 2_A3_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113649470-1922568 2_A3_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100618596-1869066 07E04_rep_A_Miglitolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100618596-1869066 07E04_rep_A_Miglitolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_60.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121450161-1866957 04B09_rep_B_Antazoline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121450161-1866957 04B09_rep_B_Antazoline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_sp_WTHI02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130224435-1877367 13E06_rep_B_Apramycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130224435-1877367 13E06_rep_B_Apramycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/413.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151529103-1576464 Batch6_CALU1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153011051-1577187 Batch3_PANC0403_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180827_ES_H3K_batch11_repA_165.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172706880-1889920 Wa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/004_Nitrate_Day11_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201357111-1877896 09E01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201357111-1877896 09E01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150221398-1864705 02A02_rep_B_Metronidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150221398-1864705 02A02_rep_B_Metronidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_rerun_GA8_01_11588.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122012828-1879732 15D05_rep_B_Ambrisentana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122012828-1879732 15D05_rep_B_Ambrisentana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET59.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET59.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/1.1_DMSO.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151342276-1576376 Batch6_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180417_ES_H3K_batch6_repA_102.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007564_031718-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_QC5.mzXML at line 689
Premature end of data in tag peaks line 14693, line 14697, column 3563 (L_QC5.mzXML, line 14697)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150905508-1865017 02E07_rep_D_Mefloquine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150905508-1865017 02E07_rep_D_Mefloquine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083187.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130717534-1877597 13E07_rep_C_Darunavira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130717534-1877597 13E07_rep_C_Darunavira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1095-A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_blank_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Kosakonia_Oryzendophytica_EB1K019.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narJ_P4E12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (narJ_P4E12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_A12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample146_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007616_032118-Unst3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ3_2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_aqueous_longstudy_230215_180.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082736/ccms_peak/ST000779/EX00375-lipidomics/Raw data/NEG/20141114_Pooled.mzXML at line 689
Unescaped '<' not allowed in attributes values, line 87, column 21 (20141114_Pooled.mzXML, line 87)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fliY_P4E1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (fliY_P4E1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124930241-1876779 12C05_rep_C_Metyraponeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124930241-1876779 12C05_rep_C_Metyraponeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_E7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152449401-1868156 05A10_rep_D_Tacrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152449401-1868156 05A10_rep_D_Tacrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088138/raw/210916_tanaka10.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092338444-1878792 14G04_rep_A_4-aminosalicylic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092338444-1878792 14G04_rep_A_4-aminosalicylic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124414765-1862352 03B11_rep_A_Flutamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124414765-1862352 03B11_rep_A_Flutamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223747011-2227624 PAT36.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_12_NOR_20.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_12_NOR_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_C15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113034709-1874358 11H07_rep_B_Bicalutamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113034709-1874358 11H07_rep_B_Bicalutamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEP2_MS_RA6_01_22520.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Blank_pesticide_Swabs_170403071821.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/acorn_argE_P3D5_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 634, column 10028434 (acorn_argE_P3D5_Aquity_pos.mzXML, line 634)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_G8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yjbB_P3D7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (yjbB_P3D7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A12_id_MSn_negative.mzML at line 21
index 241 is out of bounds for axis 0 with size 241
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170127_027ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e8/e5800bf163000e94e083d3b0c7d9d1/input_file/MMW4_20170127_027ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_G10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152903834-1868353 06A09_rep_A_Butoconazole_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152903834-1868353 06A09_rep_A_Butoconazole_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_Batch03_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150848873-1865004 02E06_rep_D_Perphenazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150848873-1865004 02E06_rep_D_Perphenazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152211010-1576792 Batch2_NCIH441_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/016_1000uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152801792-1577078 Batch3_EPLC272H_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190125002529.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124557154-1862549 03A08_rep_B_Riluzole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124557154-1862549 03A08_rep_B_Riluzole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151913727-1576651 Batch7_NCIH510_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100946078-1869232 07H05_rep_B_Tolazamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100946078-1869232 07H05_rep_B_Tolazamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112435525-1921970 3_B11_GPR1_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112435525-1921970 3_B11_GPR1_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD3_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/32-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_G2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/torZ_P3E6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (torZ_P3E6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201950079-1878159 09B03_rep_D_Picrotoxininb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201950079-1878159 09B03_rep_D_Picrotoxininb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B2_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202055667-1882212 16F02_rep_D_Irbesartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202055667-1882212 16F02_rep_D_Irbesartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114223788-1874887 11F01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114223788-1874887 11F01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092716284-1878961 14B11_rep_B_Oxaprozinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092716284-1878961 14B11_rep_B_Oxaprozinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121000411-1879271 14A11_rep_D_Quinethazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121000411-1879271 14A11_rep_D_Quinethazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123903451-1876319 08D01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123903451-1876319 08D01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151801883-1867838 05C08_rep_C_Thioguanosinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151801883-1867838 05C08_rep_C_Thioguanosinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153515622-1868641 06H05_rep_C_Fentiazacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153515622-1868641 06H05_rep_C_Fentiazacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_N3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_51_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_51_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201247368-1877845 09D01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201247368-1877845 09D01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150528123-1924456 1_D11_RGT2_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150528123-1924456 1_D11_RGT2_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6F12_160603112458.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dapA_#3_P4A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (dapA_#3_P4A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007672_032118-1CRP2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD2_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132915981-1733896 1pool Wound5D 2 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190123_ES_H3K_batch15_repB_122.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_66.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHF11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202421860-1878373 10E04_rep_A_Meclofenoxate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202421860-1878373 10E04_rep_A_Meclofenoxate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC11.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purT_P4A2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (purT_P4A2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS304P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Streptosporangium_sp_WIAH03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1H001A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD2_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007672_032118-1CRP2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1512.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1512.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123158378-1875979 08G01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123158378-1875979 08G01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_A6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_06_leg_skin_RESV_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_06_leg_skin_RESV_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/16_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007619_032118-Unst4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150119702-1864177 02C05_rep_B_Famotidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150119702-1864177 02C05_rep_B_Famotidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpTen3_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD3_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114352036-1874959 12H04_rep_A_(R)-(+)-Atenololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114352036-1874959 12H04_rep_A_(R)-(+)-Atenololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ppk_P5C2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ppk_P5C2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080030/ccms_peak/Forensic_study_80_volunteers/Forensic_Hands_mzXML/Forensic_Hands_plate_3_mzXML/.DS_Store at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101252172-1869381 07A08_rep_B_Daunorubicin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101252172-1869381 07A08_rep_B_Daunorubicin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151725905-1576562 Batch4_DU145_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153520900-1577434 Batch4_ASPC1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201241918-1877841 09H04_rep_B_Dipyroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201241918-1877841 09H04_rep_B_Dipyroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-blank.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fadK_#3_P4E5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (fadK_#3_P4E5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample156_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125905594-1863187 04E11_rep_A_Sulfinpyrazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125905594-1863187 04E11_rep_A_Sulfinpyrazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112102169-1873043 10G07_rep_C_Methimazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112102169-1873043 10G07_rep_C_Methimazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088138/raw/210916_tanaka03.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153218826-1577286 Batch4_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD3_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_CABIN_sample11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122315762-1879871 15D03_rep_C_Mesnab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122315762-1879871 15D03_rep_C_Mesnab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223553603-1870193 01F09_rep_C_Oxethazainea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223553603-1870193 01F09_rep_C_Oxethazainea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD5_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC16_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/611.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153358695-1577367 Batch5_EBC1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_D6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/845.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093219145-1879196 14H07_rep_C_Dorzolamide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093219145-1879196 14H07_rep_C_Dorzolamide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1C1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1C1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124446528-1876596 09D03_rep_A_Sumatriptan_succinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124446528-1876596 09D03_rep_A_Sumatriptan_succinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_115.mzXML at line 689
Premature end of data in tag peaks line 23720, line 23724, column 3655 (20121114_115.mzXML, line 23724)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/493-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114158511-1922841 4_G7_STE2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114158511-1922841 4_G7_STE2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_009EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ed/e8efe4fb5b3d61d7becfe1f18894d7/input_file/QC_20170209_009EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165825248-2227532 PAT38.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223532945-1870177 01H11_rep_B_Trimethobenzamide hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223532945-1870177 01H11_rep_B_Trimethobenzamide hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_7_male_2022_1017_Michael_neg-0.0025.mzML at line 689
Premature end of data in tag binary line 18781, line 18781, column 1827902 (2_7_male_2022_1017_Michael_neg-0.0025.mzML, line 18781)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GC5_01_11483.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_1_RESV_20uM_NEG.mzXML at line 689
attributes construct error, line 38, column 82 (HepG2_1_RESV_20uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112818714-1922166 4_C4_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112818714-1922166 4_C4_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample121_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD5_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_E7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132957363-1733929 1pool Wound5D 3 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152239911-1576815 Batch2_NCIH522_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control113_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control113_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000092960/raw/HILIC_plusDDA/HILIC/20221111-JC-471_HILIC_133_01.mzML at line 689
Invalid character: Char 0x0 out of allowed range
, line 13314, column 32710 (20221111-JC-471_HILIC_133_01.mzML, line 13314)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_122.mzXML at line 689
Premature end of data in tag peaks line 24349, line 24353, column 3652 (20121114_122.mzXML, line 24353)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fhuE_P4C6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (fhuE_P4C6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_57.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_G5_id_positive.mzML at line 21
index 352 is out of bounds for axis 0 with size 352
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhaA_P4C6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (rhaA_P4C6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111633954-1871581 10C11_rep_B_Mevalonic-D,_L_acid_lactonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111633954-1871581 10C11_rep_B_Mevalonic-D,_L_acid_lactonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_8_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150734274-1864946 02H11_rep_C_Gentamicine sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150734274-1864946 02H11_rep_C_Gentamicine sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170207_026EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ad/46b98c40d9478d6dbc4b16170689c1/input_file/SH10_20170207_026EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L78.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L78.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_29_2022_1003_Michael_leming_liver_neg-0.0055.mzML at line 689
Premature end of data in tag binary line 14986, line 14986, column 338578 (3_29_2022_1003_Michael_leming_liver_neg-0.0055.mzML, line 14986)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123618134-1876188 08B07_rep_C_Acetopromazine_maleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123618134-1876188 08B07_rep_C_Acetopromazine_maleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113222371-1922337 1_C8_IZH2_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113222371-1922337 1_C8_IZH2_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample145.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152418298-1576893 Batch2_NCIH520_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153416510-1868594 06C01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153416510-1868594 06C01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/859.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_6_P3A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (ctrl_6_P3A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112930514-1874312 11B03_rep_A_Cromolyn_disodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112930514-1874312 11B03_rep_A_Cromolyn_disodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHI07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/33_D25062013T0326_1399CBU_01QC_D1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153827981-1577590 Batch7_UO31_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122606147-1867495 05D02_rep_A_Chlorthalidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122606147-1867495 05D02_rep_A_Chlorthalidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample105_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_E11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GC5_01_16933.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OAD3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152043666-1576723 Batch1_NCIH2030_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153053703-1577218 Batch3_SKMES1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBmegR131_5h1a.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151127950-1576265 Batch5_PC9_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150743831-1924573 2_B5_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150743831-1924573 2_B5_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130507678-1877494 13A03_rep_C_Canrenoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130507678-1877494 13A03_rep_C_Canrenoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_08P_A2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201608502-1877991 09A03_rep_C_Gefitinibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201608502-1877991 09A03_rep_C_Gefitinibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ynfF_#1_P5B10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (ynfF_#1_P5B10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/C24_III_ESI-.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_009ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/1e/75c2dd2c2fa1213c93137f4dde49d7/input_file/QC_20170209_009ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075943.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201223109-1877827 09E07_rep_B_Tigecyclineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201223109-1877827 09E07_rep_B_Tigecyclineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_025_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121011181-1879279 14H10_rep_D_Clocortolone_pivalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121011181-1879279 14H10_rep_D_Clocortolone_pivalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K5_id_MSn_negative.mzML at line 21
index 356 is out of bounds for axis 0 with size 356
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/blank_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/840.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_E10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_347_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150420366-1924399 1_E11_RGT2_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150420366-1924399 1_E11_RGT2_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081911/ccms_peak/160113_Calcimycin_V.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_H20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111445431-1921075 1_H2_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111445431-1921075 1_H2_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/588.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case196_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case196_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153034574-1577204 Batch3_NCIH460DNP53_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/434.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_49_AC+_25.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172720790-1889930 NNa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD1_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHO02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151057985-1924740 3_D9_SNF3_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151057985-1924740 3_D9_SNF3_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/blank_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1377.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1377.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125726118-1863104 03D03_rep_D_Thalidomidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125726118-1863104 03D03_rep_D_Thalidomidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D7_id_MSn_positive.mzML at line 21
index 600 is out of bounds for axis 0 with size 600
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151156037-1924790 3_F4_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151156037-1924790 3_F4_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR124h3a.mzML at line 689
attributes construct error, line 28099, column 36 (pMIBSDR124h3a.mzML, line 28099)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124608069-1876657 09E09_rep_A_Estropipateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124608069-1876657 09E09_rep_A_Estropipateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124116661-1876425 08H10_rep_D_Etoricoxibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124116661-1876425 08H10_rep_D_Etoricoxibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111435980-1921067 1_G7_GAP1_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111435980-1921067 1_G7_GAP1_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101516009-1869495 07H07_rep_C_Mirtazapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101516009-1869495 07H07_rep_C_Mirtazapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1A06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124247108-1862282 03E05_rep_A_Flumequineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124247108-1862282 03E05_rep_A_Flumequineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125450499-1877020 12B11_rep_D_Methylatropine_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125450499-1877020 12B11_rep_D_Methylatropine_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_I17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/920.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_F6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150023091-1864133 02C01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150023091-1864133 02C01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ulaD_#3_P3G8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (ulaD_#3_P3G8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B5_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130503847-1877491 13A10_rep_C_Darifenacin_hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130503847-1877491 13A10_rep_C_Darifenacin_hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/15-4_Ms_25min__GE3_01_4249.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091744594-1878514 13C02_rep_D_Nitrocaramiphen_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091744594-1878514 13C02_rep_D_Nitrocaramiphen_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170207_067EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/5e/e6b236176785ad0c516469439deca6/input_file/MMW4_20170207_067EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_66_RIN_47.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_66_RIN_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151706509-1925050 4_A4_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151706509-1925050 4_A4_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_01_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_01_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200908429-1877685 09F08_rep_B_3-alpha-Hydroxy-5-beta-androstan-17-oneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200908429-1877685 09F08_rep_B_3-alpha-Hydroxy-5-beta-androstan-17-oneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hA2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hA2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190124_ES_H3K_batch15_repC_121.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM6C007.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_H2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_H2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_E6_id_positive.mzML at line 21
index 346 is out of bounds for axis 0 with size 346
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C4_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092122889-1878685 14E03_rep_A_(-)-Eseroline_fumarate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092122889-1878685 14E03_rep_A_(-)-Eseroline_fumarate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_H1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30238 - GI-17-563.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124323598-1876528 08G05_rep_D_Mercaptopurinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124323598-1876528 08G05_rep_D_Mercaptopurinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111433234-1871489 10F08_rep_B_Alexidine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111433234-1871489 10F08_rep_B_Alexidine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122845355-1867623 05E03_rep_A_Betamethasoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122845355-1867623 05E03_rep_A_Betamethasoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V4_LH_PSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_52_CNR_48.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_52_CNR_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cmtB_#2_P5F1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (cmtB_#2_P5F1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/119.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/2-aminoadipic_acid.mzXML at line 689
Premature end of data in tag peaks line 7607, line 7611, column 77288 (2-aminoadipic_acid.mzXML, line 7611)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_A5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210314_LKM_control_nobeads_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_212.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112651730-1874187 11D07_rep_A_Indoprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112651730-1874187 11D07_rep_A_Indoprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151633556-1576518 Batch7_MIAPACA2_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-4-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dkgA_P3B9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (dkgA_P3B9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/874.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201142948-1877798 09A11_rep_B_Pinaverium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201142948-1877798 09A11_rep_B_Pinaverium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123315528-1867835 05A05_rep_B_Phenylpropanolamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123315528-1867835 05A05_rep_B_Phenylpropanolamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130220570-1877364 13H07_rep_B_Alcuronium_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130220570-1877364 13H07_rep_B_Alcuronium_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1102.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145942773-1864102 02D03_rep_B_Metolazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145942773-1864102 02D03_rep_B_Metolazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112349161-1921929 3_D2_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112349161-1921929 3_D2_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201959248-1882168 16D08_rep_D_Adapaleneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201959248-1882168 16D08_rep_D_Adapaleneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C11_id_MSn_negative.mzML at line 21
index 318 is out of bounds for axis 0 with size 318
Error processing file: /data/datasets/server/MassIVE/MSV000090922/raw/mzML_Files_Tesis_Pablo_C/mzML_Files_40eV_Pos-Tesis_Pablo_C/QC_iterative4_40pos_33.mzML at line 255
Error -3 while decompressing data: incorrect data check
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210108_AD_62.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113532346-1874556 11H09_rep_C_Ioversola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113532346-1874556 11H09_rep_C_Ioversola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_84.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case107_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case107_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_H9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fdnG_P4B4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (fdnG_P4B4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114842380-1875186 12E09_rep_B_Nilutamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114842380-1875186 12E09_rep_B_Nilutamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample021.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200609620-1881547 16D10_rep_A_Dofetilidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200609620-1881547 16D10_rep_A_Dofetilidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_Extracellular/mzML/NEx_Baicalin_3_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xanP_#1_P4G3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (xanP_#1_P4G3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112049322-1873033 10C02_rep_C_Nadideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112049322-1873033 10C02_rep_C_Nadideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/307.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/915.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150415175954.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_119.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_105b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152546387-1576965 Batch1_CALU6_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/233.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123720134-1876237 08C07_rep_C_Alfacalcidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123720134-1876237 08C07_rep_C_Alfacalcidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_29_AC+_52.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR07/WithKBr/140305P4Ecoli.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yhdE_P5H1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (yhdE_P5H1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample035.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (23).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101821367-1869645 07B04_rep_D_Omeprazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101821367-1869645 07B04_rep_D_Omeprazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1130.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1130.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112039082-1873025 10D06_rep_C_Piperacillin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112039082-1873025 10D06_rep_C_Piperacillin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121410523-1879458 15E11_rep_A_Tulobuterola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121410523-1879458 15E11_rep_A_Tulobuterola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B05P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_P4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201631255-1878008 09A02_rep_C_Sulmazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201631255-1878008 09A02_rep_C_Sulmazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysC_P5B11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (cysC_P5B11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Blank_pesticide_170405171914.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_160.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S60.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S60.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190111_ES_H3K_batch12_repC_172.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093239554-1879212 14C11_rep_C_Vorinostata.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093239554-1879212 14C11_rep_C_Vorinostata.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111930389-1921705 2_E8_GAP1_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111930389-1921705 2_E8_GAP1_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/001_Soil_WaterExtra_2_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I19_id_MSn_positive.mzML at line 21
index 345 is out of bounds for axis 0 with size 345
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086335/ccms_peak/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Arroz - MSConvert/05Apos.mzML at line 689
error parsing attribute name, line 11859, column 149 (05Apos.mzML, line 11859)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHI01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120856369-1879222 14H07_rep_D_Dorzolamide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120856369-1879222 14H07_rep_D_Dorzolamide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/248.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101424652-1869455 07A08_rep_C_Daunorubicin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101424652-1869455 07A08_rep_C_Daunorubicin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0025_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0025_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091949071-1878613 13H11_rep_D_Pyrvinium_pamoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091949071-1878613 13H11_rep_D_Pyrvinium_pamoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisF_P3C3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (hisF_P3C3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C21_id_MSn_negative.mzML at line 21
index 275 is out of bounds for axis 0 with size 275
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ampD_P3F11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (ampD_P3F11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_F6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170127_055ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/8f/4038d66842cd576003d8152c6f49f9/input_file/MMW3_20170127_055ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GA6_01_16907.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_56.mzXML at line 689
Premature end of data in tag peaks line 18773, line 18777, column 11843 (20121114_56.mzXML, line 18777)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122224677-1879832 15F10_rep_C_Nalmefene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122224677-1879832 15F10_rep_C_Nalmefene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xylE_P3C8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (xylE_P3C8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/753.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudE_P6B8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (nudE_P6B8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_3_P_rep_4_B-D3_1_5852.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201906146-1878125 09H05_rep_D_Isosorbide_dinitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201906146-1878125 09H05_rep_D_Isosorbide_dinitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152832448-1577104 Batch3_ACHN_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122638397-1880027 15C02_rep_D_Famciclovirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122638397-1880027 15C02_rep_D_Famciclovirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150414502-1924394 1_B7_RGT2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150414502-1924394 1_B7_RGT2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR124h2b.mzML at line 689
Opening and ending tag mismatch: spectrum line 211430 and binary, line 211438, column 2610 (pBpumR124h2b.mzML, line 211438)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122818042-1867602 05A08_rep_A_Cefoperazone_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122818042-1867602 05A08_rep_A_Cefoperazone_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GC6_01_16934.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152558577-1576975 Batch3_MDAMB157_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-023_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201549058-1881975 16H06_rep_C_Valsartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201549058-1881975 16H06_rep_C_Valsartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124338237-1862323 03G07_rep_A_Griseofulvina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124338237-1862323 03G07_rep_A_Griseofulvina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5D02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M16_id_MSn_positive.mzML at line 21
index 430 is out of bounds for axis 0 with size 430
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180625_ES_H3K_bacth8_repA_104.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L3_id_MSn_positive.mzML at line 21
index 659 is out of bounds for axis 0 with size 659
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_H2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/dehydrocostus_lactone.mzXML at line 689
Premature end of data in tag peaks line 4927, line 4931, column 105962 (dehydrocostus_lactone.mzXML, line 4931)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123800872-1876269 08F03_rep_C_Fenipentolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123800872-1876269 08F03_rep_C_Fenipentolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093013935-1879100 14H04_rep_C_Viomycin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093013935-1879100 14H04_rep_C_Viomycin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc7 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223534280-1870178 01H11_rep_B_Trimethobenzamide hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223534280-1870178 01H11_rep_B_Trimethobenzamide hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hcaF_P3D3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (hcaF_P3D3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_52_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_52_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122811150-1875799 08B07_rep_A_Acetopromazine_maleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122811150-1875799 08B07_rep_A_Acetopromazine_maleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-035.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-035.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/BUD2_20EV_RA5_01_22584.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_123.mzXML at line 689
Premature end of data in tag peaks line 22649, line 22653, column 3651 (20121114_123.mzXML, line 22653)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_18092931_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082795/ccms_peak/raw/MTBLS428/mtab_tsq_cara_020615_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082795/ccms_peak/raw/MTBLS428/mtab_tsq_cara_020615_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113925435-1874743 11D04_rep_D_Ifosfamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113925435-1874743 11D04_rep_D_Ifosfamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J22_id_MSn_positive.mzML at line 21
index 681 is out of bounds for axis 0 with size 681
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145910757-1864076 02A08_rep_A_Diazoxideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145910757-1864076 02A08_rep_A_Diazoxideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125953867-1877254 13C02_rep_A_Nitrocaramiphen_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125953867-1877254 13C02_rep_A_Nitrocaramiphen_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122739218-1875774 08D03_rep_A_Etofenamatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122739218-1875774 08D03_rep_A_Etofenamatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113941112-1922719 3_C3_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113941112-1922719 3_C3_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/460-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122022665-1867218 04B05_rep_C_Nortriptyline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122022665-1867218 04B05_rep_C_Nortriptyline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201258540-1877853 09C06_rep_B_Tetraethylenepentamine_pentahydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201258540-1877853 09C06_rep_B_Tetraethylenepentamine_pentahydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD6_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/962.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike0_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223729780-2227609 PAT35.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123109067-1875939 08E07_rep_A_Rimantadine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123109067-1875939 08E07_rep_A_Rimantadine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121129771-1879338 14F08_rep_D_(-)-Isoproterenol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121129771-1879338 14F08_rep_D_(-)-Isoproterenol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151717238-1925059 4_B4_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151717238-1925059 4_B4_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_12_leg_skin_RESV_skin_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_12_leg_skin_RESV_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223951374-1870376 01E11_rep_C_Lidocaine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223951374-1870376 01E11_rep_C_Lidocaine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092859543-1879042 14D03_rep_C_Lansoprazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092859543-1879042 14D03_rep_C_Lansoprazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153507468-1577423 Batch4_SW1573_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B12P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190117_ES_H3K_batch14_repA_203.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std c 030a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112816014-1874254 11E09_rep_A_Iodixanola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112816014-1874254 11E09_rep_A_Iodixanola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112711497-1922106 4_G10_GPR1_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112711497-1922106 4_G10_GPR1_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GD3_01_17179.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/93.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ1_3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130605296-1877540 13B08_rep_C_Zardaverineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130605296-1877540 13B08_rep_C_Zardaverineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/444.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121743654-1879619 15H07_rep_B_Rosiglitazone_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121743654-1879619 15H07_rep_B_Rosiglitazone_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_11_liver_RESV_skin_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_11_liver_RESV_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7C07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092259/ccms_peak/Sample0008.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153715010-1577529 Batch4_NCIH1666_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202224009-1878280 10F10_rep_A_Zomepirac_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202224009-1878280 10F10_rep_A_Zomepirac_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GD2_01_16945.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125723867-1877138 13G11_rep_A_Torsemideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125723867-1877138 13G11_rep_A_Torsemideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202211232-1882271 16F07_rep_D_Flumethasone_pivalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202211232-1882271 16F07_rep_D_Flumethasone_pivalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123239861-1876012 08H05_rep_B_Tomoxetine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123239861-1876012 08H05_rep_B_Tomoxetine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/62-4_MsMs_25min_40eV_GE2_01_4123.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152631007-1577002 Batch2_NCIH292_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case209_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case209_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202115771-1878226 09C01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202115771-1878226 09C01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_012EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/7a/3fbc55852ee6f2ab731086efdb5d48/input_file/QC_20170207_012EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152153116-1576778 Batch2_NCIH2291_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yaaJ_P4E9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (yaaJ_P4E9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person03_RBC_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Person03_RBC_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201708729-1882035 16B07_rep_C_Tegafura.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201708729-1882035 16B07_rep_C_Tegafura.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/oppC_P3A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (oppC_P3A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L15_id_negative.mzML at line 21
index 247 is out of bounds for axis 0 with size 247
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202115026-1882227 16F10_rep_D_Besifloxacin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202115026-1882227 16F10_rep_D_Besifloxacin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113120077-1874392 11E04_rep_B_Nafcillin_sodium_salt_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113120077-1874392 11E04_rep_B_Nafcillin_sodium_salt_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102045386-1869762 07C07_rep_D_Sisomicin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102045386-1869762 07C07_rep_D_Sisomicin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151809931-1867844 05C10_rep_C_Ritodrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151809931-1867844 05C10_rep_C_Ritodrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223305447-1870064 01A11_rep_B_Sulfaguanidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223305447-1870064 01A11_rep_B_Sulfaguanidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_237.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113916696-1874736 11G11_rep_D_Luteolina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113916696-1874736 11G11_rep_D_Luteolina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210120_AD_55.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fbaA_P5F12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (fbaA_P5F12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123448203-1876116 08H03_rep_B_Dipivefrin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123448203-1876116 08H03_rep_B_Dipivefrin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112243635-1873604 10B08_rep_D_Trimetozineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112243635-1873604 10B08_rep_D_Trimetozineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153620796-1868693 06D07_rep_C_Digitoxigeninb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153620796-1868693 06D07_rep_C_Digitoxigeninb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_64.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130720210-1877599 13A09_rep_C_Decamethonium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130720210-1877599 13A09_rep_C_Decamethonium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153340248-1577352 Batch5_NCIH23_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223254853-1870056 01E03_rep_B_Moxisylyte hydrochorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223254853-1870056 01E03_rep_B_Moxisylyte hydrochorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111505185-1921092 1_B10_GAP1_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111505185-1921092 1_B10_GAP1_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122829720-1880114 15A02_rep_D_Buspirone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122829720-1880114 15A02_rep_D_Buspirone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD073_P1-A-2_01_2382.mzML at line 255
Error -3 while decompressing data: invalid code lengths set
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2A06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121021907-1879287 14A07_rep_D_Repaglinideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121021907-1879287 14A07_rep_D_Repaglinideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092106189-1878672 14G11_rep_A_Parbendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092106189-1878672 14G11_rep_A_Parbendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nfsB_#1_P5C9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (nfsB_#1_P5C9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case46_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case46_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091805840-1878531 13B11_rep_D_Piribedil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091805840-1878531 13B11_rep_D_Piribedil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124130174-1876436 08H04_rep_D_Thiorphana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124130174-1876436 08H04_rep_D_Thiorphana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_012EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/03/37bef671969259c440915045c091d4/input_file/QC_20170209_012EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151250781-1576333 Batch5_HCC1187_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200643152-1881572 16E02_rep_A_Cefuroxime_axetilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200643152-1881572 16E02_rep_A_Cefuroxime_axetilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125752300-1877160 13D10_rep_A_Proguanil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125752300-1877160 13D10_rep_A_Proguanil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082738/ccms_peak/ST000780/EX00361-lipidomics/Raw data/POS/20150304_Pooled.mzXML at line 689
Opening and ending tag mismatch: peaks line 47686 and msRun, line 67040, column 11 (20150304_Pooled.mzXML, line 67040)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2E07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125632287-1877098 12A05_rep_D_Meglumineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125632287-1877098 12A05_rep_D_Meglumineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/680.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095538/raw/2mecdp_12C_CE10_msAG243_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024762 (2mecdp_12C_CE10_msAG243_Aquity_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150520946-1864843 02B10_rep_C_Mianserine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150520946-1864843 02B10_rep_C_Mianserine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD6_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092606511-1878907 14D03_rep_B_Lansoprazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092606511-1878907 14D03_rep_B_Lansoprazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG018A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_12_NOR_20.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_12_NOR_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_C12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_65.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case209_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case209_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094443/raw/All Egg Mass/2A5E_MSMS.mzML at line 689
Premature end of data in tag indexedmzML line 2, line 43161, column 1 (2A5E_MSMS.mzML, line 43161)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R17_5h1a.mzML at line 689
Opening and ending tag mismatch: isolationWindow line 171967 and binary, line 171968, column 242 (pBlichMO17R17_5h1a.mzML, line 171968)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/24_D24062013T2306_1399CBU_0008_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_Timedependent/mzML/B_15102011_D2_Neg_cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122749928-1867579 05E10_rep_A_Meloxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122749928-1867579 05E10_rep_A_Meloxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_C10_id_positive.mzML at line 21
index 352 is out of bounds for axis 0 with size 352
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200852650-1881667 16B04_rep_A_Rizatriptan_benzoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200852650-1881667 16B04_rep_A_Rizatriptan_benzoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_15_Liver_CMC_control_POS.mzXML at line 689
attributes construct error, line 38, column 91 (Mouse_15_Liver_CMC_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_15102101_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101151374-1869332 07A05_rep_B_Benperidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101151374-1869332 07A05_rep_B_Benperidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_A5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_16_Dorsal_skin_CMC_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_16_Dorsal_skin_CMC_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N6_id_MSn_positive.mzML at line 21
index 400 is out of bounds for axis 0 with size 400
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122940697-1880170 15E10_rep_D_Tripelennamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122940697-1880170 15E10_rep_D_Tripelennamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-036_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153712762-1577527 Batch4_NCIH1048_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112254637-1873613 10F08_rep_D_Alexidine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112254637-1873613 10F08_rep_D_Alexidine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/930.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/eutB_P4H3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (eutB_P4H3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B4_id.mzML at line 21
index 570 is out of bounds for axis 0 with size 570
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/cpppg3_hemN_P3E9_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (cpppg3_hemN_P3E9_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200957401-1881715 16G02_rep_B_Epirubicin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200957401-1881715 16G02_rep_B_Epirubicin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C7_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_G6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_G6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145720071-1863987 02D09_rep_A_Nalbuphine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145720071-1863987 02D09_rep_A_Nalbuphine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alsE_#1_P4E2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (alsE_#1_P4E2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124818552-1862662 03H10_rep_B_Orphenadrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124818552-1862662 03H10_rep_B_Orphenadrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_aqueous_longstudy_230215_176.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GG10_01_16871.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223952914-2227733 PAT42.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210112_AD_75.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/7-methylguanosine.mzXML at line 689
Premature end of data in tag peaks line 5367, line 5371, column 19946 (7-methylguanosine.mzXML, line 5371)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_CABIN_sample08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_qc_ehigh (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153612325-1868686 06F10_rep_C_Butalbitala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153612325-1868686 06F10_rep_C_Butalbitala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088261/raw/210916_tanaka07.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28022021_Batch02_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNH287_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_plasma_24h_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer3_plasma_24h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122231368-1867321 04B07_rep_D_Isotretinoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122231368-1867321 04B07_rep_D_Isotretinoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113413439-1922434 2_H3_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113413439-1922434 2_H3_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample20n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121309780-1879412 15F02_rep_A_Topotecana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121309780-1879412 15F02_rep_A_Topotecana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007660_032118-1Thr4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_F8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G13_id_negative.mzML at line 21
index 265 is out of bounds for axis 0 with size 265
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122737982-1875773 08D02_rep_A_Emedastineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122737982-1875773 08D02_rep_A_Emedastineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113807589-1874680 11H04_rep_C_Theophylline_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113807589-1874680 11H04_rep_C_Theophylline_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122545017-1867478 05A03_rep_A_Alfuzosin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122545017-1867478 05A03_rep_A_Alfuzosin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case12_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case12_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_MSMS_2022_1003_Michael_leming_liver_neg-0011.mzML at line 689
Premature end of data in tag binary line 5253, line 5253, column 2935419 (pooled_MSMS_2022_1003_Michael_leming_liver_neg-0011.mzML, line 5253)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101847684-1869666 07D06_rep_D_Trimethadioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101847684-1869666 07D06_rep_D_Trimethadioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123207705-1867780 05B07_rep_B_Chlormezanonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123207705-1867780 05B07_rep_B_Chlormezanonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207133005698-1733935 1pool Skin 2 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case34_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case34_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D22_id_MSn_positive.mzML at line 21
index 387 is out of bounds for axis 0 with size 387
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Metabolomics/C140M.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ROO2_40EV_RA3_01_22566.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151836662-1576620 Batch7_NCIH2444_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087689/raw/Hela_bulk/OR11_20160122_PG_HeLa_CVB3_CT_B.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101433307-1869462 07F09_rep_C_Phenindioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101433307-1869462 07F09_rep_C_Phenindioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114615213-1875070 12F10_rep_A_Iodipamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114615213-1875070 12F10_rep_A_Iodipamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151214690-1576303 Batch5_PC9_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7D04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151941301-1576674 Batch1_UMUC3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_C3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151423249-1576410 Batch7_CORL23_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130213901-1877359 13C05_rep_B_Oxfendazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130213901-1877359 13C05_rep_B_Oxfendazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123142641-1867760 05H06_rep_B_Amikacin_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123142641-1867760 05H06_rep_B_Amikacin_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170127_035ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/af/932ec2633388d2562e8e66765cebf1/input_file/MMW4_20170127_035ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_167.mzXML at line 689
Premature end of data in tag peaks line 19623, line 19627, column 3653 (20121114_167.mzXML, line 19627)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152636964-1577007 Batch1_7860_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000096497/peak/20201109_ProgressCurveAnalysis_GltA_set4_eff12_t2_rep1.mzML at line 689
Premature end of data in tag binary line 2443, line 2443, column 21757 (20201109_ProgressCurveAnalysis_GltA_set4_eff12_t2_rep1.mzML, line 2443)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125226347-1862860 03C04_rep_C_Pargyline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125226347-1862860 03C04_rep_C_Pargyline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125241825-1876922 12A06_rep_D_Dolasetron_mesilateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125241825-1876922 12A06_rep_D_Dolasetron_mesilateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096550/peak/Bigelow_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151904164-1576643 Batch7_NCIH1693_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085316/ccms_peak/Data_Deposition/LCMS_Data/COM13_D592_RPMI_Positive_Polarity/mzXML_Formatted_Data/+COM13_Samp04_TP5_GD5_01_19175.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000085316/ccms_peak/Data_Deposition/LCMS_Data/COM13_D592_RPMI_Positive_Polarity/mzXML_Formatted_Data/+COM13_Samp04_TP5_GD5_01_19175.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GD9_01_17062.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ubiC_#2_P5F8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (ubiC_#2_P5F8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152828963-1577101 Batch5_HOP92_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G12_id_MSn_positive.mzML at line 21
index 445 is out of bounds for axis 0 with size 445
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_009ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/a2/0ebed7668ce02bb00400e2b0e163ae/input_file/QC_20170127_009ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_40x_MSMS_2022_1006_Michael_pos-0009.mzML at line 689
Premature end of data in tag binary line 82859, line 82859, column 122524 (pooled_40x_MSMS_2022_1006_Michael_pos-0009.mzML, line 82859)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V6_EDTAk2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_05_liver_RESV_oral_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_05_liver_RESV_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150844987-1865001 02A02_rep_D_Metronidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150844987-1865001 02A02_rep_D_Metronidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114208907-1874875 11H10_rep_D_Rabeprazole_Sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114208907-1874875 11H10_rep_D_Rabeprazole_Sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/torZ_P3E6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (torZ_P3E6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152938315-1577160 Batch3_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_A10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125821414-1863150 04H01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125821414-1863150 04H01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150320526-1864750 02G11_rep_B_Dihydroergotamine tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150320526-1864750 02G11_rep_B_Dihydroergotamine tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111431281-1921063 1_C5_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111431281-1921063 1_C5_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cmk_P3B6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (cmk_P3B6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112248699-1873608 10G09_rep_D_Hexylcaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112248699-1873608 10G09_rep_D_Hexylcaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150810796-1924596 2_F2_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150810796-1924596 2_F2_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_106a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_23.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_23.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/886.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ugpB_P3A4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (ugpB_P3A4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control250_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control250_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123503041-1876128 08A06_rep_B_Atropine_sulfate_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123503041-1876128 08A06_rep_B_Atropine_sulfate_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111654614-1871597 10G08_rep_B_Merbromina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111654614-1871597 10G08_rep_B_Merbromina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223106871-1869975 01G03_rep_A_Homatropine hydrobromide (R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223106871-1869975 01G03_rep_A_Homatropine hydrobromide (R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007688_032218-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D7_id_MSn_positive.mzML at line 21
index 391 is out of bounds for axis 0 with size 391
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_E7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114453261-1875009 12G10_rep_A_(+,-)-Octopamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114453261-1875009 12G10_rep_A_(+,-)-Octopamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_104.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_E6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151810243-1576598 Batch7_UMC11_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine3cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine3cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_393.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mhpF_P6B10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (mhpF_P6B10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153236048-1868515 06E03_rep_B_Clobutinol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153236048-1868515 06E03_rep_B_Clobutinol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101139993-1869323 07F03_rep_B_Grepafloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101139993-1869323 07F03_rep_B_Grepafloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/20221212_carryover_test_noISTD_PLASMA_sample08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C23_id_negative.mzML at line 21
index 245 is out of bounds for axis 0 with size 245
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224021769-1870399 01B06_rep_D_Heptaminol hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224021769-1870399 01B06_rep_D_Heptaminol hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1E04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201334274-1881877 16D11_rep_B_Phenprobamatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201334274-1881877 16D11_rep_B_Phenprobamatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1027.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-144_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample143.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_148.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_148.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHH02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151308779-1576348 Batch7_SNB75_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114533432-1875039 12A04_rep_A_Digoxigeninb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114533432-1875039 12A04_rep_A_Digoxigeninb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_19090114_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/243.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ghrB_P3D11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (ghrB_P3D11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/idnK_#1_P3F10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (idnK_#1_P3F10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case136_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case136_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET35.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET35.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR17_5h2a.mzML at line 689
Specification mandates value for attribute acRAOiCES1sAhEb1wJRLmmCUQP2QlE, line 245870, column 65 (pMIBSDR17_5h2a.mzML, line 245870)
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_15_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gntT_P5B7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (gntT_P5B7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112249783-1873609 10C07_rep_D_Glycopyrrolatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112249783-1873609 10C07_rep_D_Glycopyrrolatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/ectoine.mzXML at line 689
Premature end of data in tag peaks line 5327, line 5331, column 89580 (ectoine.mzXML, line 5331)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_blood_4h_NEG.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer3_blood_4h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151151787-1576284 Batch5_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152456938-1576924 Batch2_BXPC3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130046515-1863270 04H05_rep_A_Enalapril_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130046515-1863270 04H05_rep_A_Enalapril_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170209_037ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/01/2bc081f066be7c8122133356bb4b01/input_file/MMW3_20170209_037ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpF_P3B11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (glpF_P3B11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092400835-1878809 14A02_rep_A_Etomidateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092400835-1878809 14A02_rep_A_Etomidateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085043/ccms_peak/N_2020-02-20_Seg1T2.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000085043/ccms_peak/N_2020-02-20_Seg1T2.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_cc4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122144495-1867284 04D06_rep_D_Fenofibratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122144495-1867284 04D06_rep_D_Fenofibratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xdhB_#2_P4F4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (xdhB_#2_P4F4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_A9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_180.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123024280-1875903 08E03_rep_A_Tizanidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123024280-1875903 08E03_rep_A_Tizanidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151810243-1576598 Batch7_UMC11_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pykA_P3G10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (pykA_P3G10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130347021-1877431 13G10_rep_B_Risperidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130347021-1877431 13G10_rep_B_Risperidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_A10_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152920610-1577145 Batch3_ACHN_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/83.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNY243_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E6_id_MSn_negative.mzML at line 21
index 319 is out of bounds for axis 0 with size 319
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081039/ccms_peak/raw/MTBLS293/mtab_R1_Dyhram_2014_1017_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiE_P3G10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (thiE_P3G10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152751730-1868297 06C07_rep_A_Buflomedil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152751730-1868297 06C07_rep_A_Buflomedil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152303924-1576834 Batch1_HCC1806_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121526479-1866985 04G02_rep_B_Lisinoprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121526479-1866985 04G02_rep_B_Lisinoprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I11_id_MSn_positive.mzML at line 21
index 679 is out of bounds for axis 0 with size 679
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121705799-1867063 04H09_rep_B_Quinacrine_dihydrochloride_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121705799-1867063 04H09_rep_B_Quinacrine_dihydrochloride_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/CPV_P_rep_4_B-C3_1_5655.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD3_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2A08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/164-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165913621-2227577 PAT39.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150645200-1924522 2_F10_RGT2_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150645200-1924522 2_F10_RGT2_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007577_031718-5CRP6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case244_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case244_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_CABIN_sample08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150917130-1924653 2_C9_RGT2_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150917130-1924653 2_C9_RGT2_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201452784-1877937 09E09_rep_C_Estropipateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201452784-1877937 09E09_rep_C_Estropipateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125739082-1877150 13C05_rep_A_Oxfendazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125739082-1877150 13C05_rep_A_Oxfendazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151107055-1924748 3_H11_SNF3_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151107055-1924748 3_H11_SNF3_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H16_id_MSn_negative.mzML at line 21
index 341 is out of bounds for axis 0 with size 341
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyuA_P3G2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (hyuA_P3G2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/29_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112252216-1873611 10A05_rep_D_Sulfamethoxypyridazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112252216-1873611 10A05_rep_D_Sulfamethoxypyridazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170125_055EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c8/da4d5485f1995f02fbaacaa98181ab/input_file/MMW3_20170125_055EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112646116-1922084 4_D11_GPR1_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112646116-1922084 4_D11_GPR1_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150823609-1924607 2_G10_RGT2_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150823609-1924607 2_G10_RGT2_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-017.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-017.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100947340-1869233 07F09_rep_B_Phenindionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100947340-1869233 07F09_rep_B_Phenindionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113149032-1922308 1_C4_WT_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113149032-1922308 1_C4_WT_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7A09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_A6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J8_id_MSn_negative.mzML at line 21
index 335 is out of bounds for axis 0 with size 335
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112528510-1874121 10H09_rep_D_Dienestrolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112528510-1874121 10H09_rep_D_Dienestrolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HaCaT_2_RESV_200uM_NEG.mzXML at line 689
attributes construct error, line 38, column 83 (HaCaT_2_RESV_200uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152952461-1577172 Batch3_MIAPACA2_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lsrC_P4A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (lsrC_P4A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417190026.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA25.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_B22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_0126_190128194316.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113250776-1874464 11A04_rep_B_Pyrithyldionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113250776-1874464 11A04_rep_B_Pyrithyldionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GE12_01_16896.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_E10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/moaE_P4H10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (moaE_P4H10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123705307-1876225 08B10_rep_C_Lacidipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123705307-1876225 08B10_rep_C_Lacidipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_15102101_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223011146-1869933 01F01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223011146-1869933 01F01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153217606-1577285 Batch5_OVCAR5_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D14_id_MSn_negative.mzML at line 21
index 311 is out of bounds for axis 0 with size 311
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223317024-1870073 01F01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223317024-1870073 01F01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112543902-1874133 11D11_rep_A_Ethopropazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112543902-1874133 11D11_rep_A_Ethopropazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M7_id_MSn_positive.mzML at line 21
index 283 is out of bounds for axis 0 with size 283
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124521338-1862404 03A07_rep_A_Mafenide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124521338-1862404 03A07_rep_A_Mafenide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sdhB_P3F1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (sdhB_P3F1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30123 - GI-16-035.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control39_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control39_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rpiA_P3G12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (rpiA_P3G12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152210885-1868036 05G07_rep_D_GBR_12909_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152210885-1868036 05G07_rep_D_GBR_12909_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_133_3A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125603780-1877076 12H07_rep_D_Megestrol_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125603780-1877076 12H07_rep_D_Megestrol_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125526217-1863006 03C07_rep_D_Cloxacillin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125526217-1863006 03C07_rep_D_Cloxacillin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113110124-1922274 1_E8_IZH2_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113110124-1922274 1_E8_IZH2_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_E5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150801628-1924588 2_G4_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150801628-1924588 2_G4_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_242.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/686.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151014613-1924703 3_A4_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151014613-1924703 3_A4_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28022021_Batch02_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112838644-1874272 11C03_rep_A_Clidinium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112838644-1874272 11C03_rep_A_Clidinium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A14_id_MSn_negative_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222737051-1869817 01C11_rep_A_Antipyrine, 4-hydroxya.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222737051-1869817 01C11_rep_A_Antipyrine, 4-hydroxya.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8H10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125515012-1862997 03G06_rep_D_Nifenazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125515012-1862997 03G06_rep_D_Nifenazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GA3_01_16903.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_1_RESV_0uM_POS.mzXML at line 689
attributes construct error, line 38, column 81 (HepG2_1_RESV_0uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082735/ccms_peak/ST000664/EX00347-lipidomics/Raw data/POS/BATCH1/20150318_Authentic.mzXML at line 689
Extra content at the end of the document, line 54771, column 1 (20150318_Authentic.mzXML, line 54771)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OAD1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/016_100uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/417.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201144379-1877799 09A11_rep_B_Pinaverium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201144379-1877799 09A11_rep_B_Pinaverium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202018131-1878181 09A07_rep_D_Oxiconazole_Nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202018131-1878181 09A07_rep_D_Oxiconazole_Nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152928881-1577152 Batch5_NCIH2347_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudG_#1_P5D10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (nudG_#1_P5D10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysZ_#3_P5C6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (cysZ_#3_P5C6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152158230-1576782 Batch1_NCIH1703_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100556192-1869048 07G02_rep_A_Ciclopirox_ethanolamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100556192-1869048 07G02_rep_A_Ciclopirox_ethanolamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121813384-1879642 15G03_rep_B_Bosentana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121813384-1879642 15G03_rep_B_Bosentana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152510389-1868172 05G10_rep_D_Ketoconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152510389-1868172 05G10_rep_D_Ketoconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122745187-1867575 05C10_rep_A_Ritodrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122745187-1867575 05C10_rep_A_Ritodrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N8_id.mzML at line 21
index 562 is out of bounds for axis 0 with size 562
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yfeX_#5_P4B7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (yfeX_#5_P4B7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/054_55.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C10_id_MSn_negative.mzML at line 21
index 270 is out of bounds for axis 0 with size 270
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD2_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124249499-1876500 08H05_rep_D_Tomoxetine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124249499-1876500 08H05_rep_D_Tomoxetine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_M18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_rerun_F1_01_11765.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112157140-1873567 10D03_rep_D_Phenazopyridine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112157140-1873567 10D03_rep_D_Phenazopyridine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088791/ccms_peak/DIA/sgoetze_A1902_194.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000088791/ccms_peak/DIA/sgoetze_A1902_194.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B12_id.mzML at line 21
index 512 is out of bounds for axis 0 with size 512
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113738683-1874657 11H11_rep_C_Carbacholb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113738683-1874657 11H11_rep_C_Carbacholb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092743488-1878982 14F02_rep_B_Spaglumic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092743488-1878982 14F02_rep_B_Spaglumic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202549828-1878442 10B09_rep_A_Folinic_acid_calcium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202549828-1878442 10B09_rep_A_Folinic_acid_calcium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaD_P4F9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (paaD_P4F9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P21_id_MSn_positive.mzML at line 21
index 401 is out of bounds for axis 0 with size 401
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A8_id_MSn_positive.mzML at line 21
index 556 is out of bounds for axis 0 with size 556
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180916_ES_H3K_batch2_repC_29.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/poxB_P4H8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (poxB_P4H8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ANT1_50EV_RA3_01_22650.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_C6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_E12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_E12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/239.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153904661-1577621 Batch6_HCC1806_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_22.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_22.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L10_id_MSn_negative.mzML at line 21
index 373 is out of bounds for axis 0 with size 373
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample069.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151452793-1576435 Batch6_NCIH1155_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/277.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F14_id_MSn_positive.mzML at line 21
index 617 is out of bounds for axis 0 with size 617
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_167.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124815843-1876724 12B05_rep_C_Butylparabena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124815843-1876724 12B05_rep_C_Butylparabena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151458289-1924947 4_H10_SNF3_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151458289-1924947 4_H10_SNF3_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_62_CNR_40.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_62_CNR_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malZ_P4G6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (malZ_P4G6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/BUD2_30EV_RA5_01_22585.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_G9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ygaH_P5D4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (ygaH_P5D4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113959163-1922735 3_E2_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113959163-1922735 3_E2_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_Timedependent/mzML/B_15102011_D6_Neg_cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101744774-1869615 07F04_rep_D_Phenacetina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101744774-1869615 07F04_rep_D_Phenacetina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125246064-1862876 03C06_rep_C_Aztreonama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125246064-1862876 03C06_rep_C_Aztreonama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170125_048EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/73/e7e0c951d3d35e78360781d4804dd3/input_file/QC_20170125_048EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHC01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD4_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fhuC_P5D7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (fhuC_P5D7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D21_id.mzML at line 21
index 633 is out of bounds for axis 0 with size 633
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_20_Dorsal_skin_EtOH_control_POS.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_20_Dorsal_skin_EtOH_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0035_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0035_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092522528-1878873 14H03_rep_B_Procarbazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092522528-1878873 14H03_rep_B_Procarbazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153149077-1868478 06F03_rep_B_Stanozolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153149077-1868478 06F03_rep_B_Stanozolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_13_CNR_30.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_13_CNR_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150719896-1924552 2_F5_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150719896-1924552 2_F5_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124259552-1876508 08F05_rep_D_Carbidopaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124259552-1876508 08F05_rep_D_Carbidopaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_P_E3E3_AD_IMS_11Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5C04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101941947-1869710 07G03_rep_D_Probenecidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101941947-1869710 07G03_rep_D_Probenecidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ynfH_#1_P5F6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (ynfH_#1_P5F6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/exbB_P3H12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (exbB_P3H12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D21_id_MSn_negative.mzML at line 21
index 334 is out of bounds for axis 0 with size 334
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD1_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151158898-1576290 Batch5_SHP77_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/treA_P3A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (treA_P3A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130523099-1877506 13H02_rep_C_Halofantrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130523099-1877506 13H02_rep_C_Halofantrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152928881-1577152 Batch5_NCIH2347_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/-ve_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_18_Blood_CMC_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 88 (Mouse_18_Blood_CMC_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tesB_P5F12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (tesB_P5F12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075696.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2C07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-046_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009355_IBD200_E1_B2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121434641-1866945 04F09_rep_B_Fipexide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121434641-1866945 04F09_rep_B_Fipexide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145943919-1864103 02C02_rep_B_R(-) Apomorphine hydrochloride hemihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145943919-1864103 02C02_rep_B_R(-) Apomorphine hydrochloride hemihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_35_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_35_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample022_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090773/peak/B1_IC_NP_NEG_C3.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000090773/peak/B1_IC_NP_NEG_C3.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/20221212_carryover_test_noISTD_PLASMA_sample04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121510080-1879502 15C09_rep_A_Cladribinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121510080-1879502 15C09_rep_A_Cladribinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F5_id_MSn_positive.mzML at line 21
index 562 is out of bounds for axis 0 with size 562
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1020.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172714991-1889926 Wa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_135b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113949160-1874762 11G03_rep_D_Raloxifene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113949160-1874762 11G03_rep_D_Raloxifene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124317773-1876523 08C01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124317773-1876523 08C01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_07_NOR_53.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_07_NOR_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_5_P4A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (ctrl_5_P4A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_C11_id_positive.mzML at line 21
index 404 is out of bounds for axis 0 with size 404
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2C08Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170207_032EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/f9/0ec29507133a843aaf38b0da2b4261/input_file/MMW3_20170207_032EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101633049-1869556 07B11_rep_C_Ethamivanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101633049-1869556 07B11_rep_C_Ethamivanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101244609-1869375 07E06_rep_B_Rifampicina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101244609-1869375 07E06_rep_B_Rifampicina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_72_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_72_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNQ329_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/342.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123132619-1867752 05E06_rep_B_Brinzolamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123132619-1867752 05E06_rep_B_Brinzolamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100644585-1869087 07E05_rep_A_Tiabendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100644585-1869087 07E05_rep_A_Tiabendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/36-4_MsMs_25min_50eV_GE4_01_4131.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D6_id_MSn_negative.mzML at line 21
index 278 is out of bounds for axis 0 with size 278
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152436055-1868146 05H01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152436055-1868146 05H01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GH9_01_17119.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125738249-1863114 04A05_rep_A_Glutethimide,_para-aminoa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125738249-1863114 04A05_rep_A_Glutethimide,_para-aminoa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152352859-1576873 Batch2_NCIH460_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Erwinia_billingiae_MS2C06Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fhuA_#2_P4B8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (fhuA_#2_P4B8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130531845-1877513 13D03_rep_C_Pizotifen_malatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130531845-1877513 13D03_rep_C_Pizotifen_malatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125621932-1877090 12F09_rep_D_Benserazide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125621932-1877090 12F09_rep_D_Benserazide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121113949-1879326 14A03_rep_D_Tridihexethyl_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121113949-1879326 14A03_rep_D_Tridihexethyl_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151437093-1924929 4_F10_SNF3_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151437093-1924929 4_F10_SNF3_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150805223-1864970 02E03_rep_D_Amfepramone hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150805223-1864970 02E03_rep_D_Amfepramone hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123600573-1876174 08G05_rep_C_Mercaptopurinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123600573-1876174 08G05_rep_C_Mercaptopurinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/840.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124634854-1876678 09A04_rep_A_Flunisolidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124634854-1876678 09A04_rep_A_Flunisolidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD5_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/801.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145551928-1863916 02H07_rep_A_Ivermectinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145551928-1863916 02H07_rep_A_Ivermectinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152545188-1868199 05C06_rep_D_Clenbuterol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152545188-1868199 05C06_rep_D_Clenbuterol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_234.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180412_ES_H3K_batch7_repB_75.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/blank_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151525556-1576461 Batch7_CORL88_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD1_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ3_1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153910682-1577626 Batch6_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152653685-1577021 Batch1_NCIH1299_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152915116-1868362 06D06_rep_A_Cyclosporin_Aa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152915116-1868362 06D06_rep_A_Cyclosporin_Aa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145733742-1863998 02G07_rep_A_Tamoxifen citrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145733742-1863998 02G07_rep_A_Tamoxifen citrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123759698-1876268 08F03_rep_C_Fenipentola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123759698-1876268 08F03_rep_C_Fenipentola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case13_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case13_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-109_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C18_id_MSn_positive.mzML at line 21
index 753 is out of bounds for axis 0 with size 753
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113013353-1874344 11G04_rep_B_Ciclesonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113013353-1874344 11G04_rep_B_Ciclesonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rfbD_P3G10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (rfbD_P3G10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152604585-1576980 Batch2_SW900_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/ccms_peak/Raw_Spectrum_Files/ALZ_FCX_P_E3E4_C_02Feb18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125406687-1876987 12H08_rep_D_Deoxycorticosteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125406687-1876987 12H08_rep_D_Deoxycorticosteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151024340-1865078 02A05_rep_D_Moroxidine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151024340-1865078 02A05_rep_D_Moroxidine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125911480-1863192 04F11_rep_A_Diperodon_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125911480-1863192 04F11_rep_A_Diperodon_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A7_id_negative.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124137458-1862227 03F04_rep_A_Fenspiride_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124137458-1862227 03F04_rep_A_Fenspiride_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152329799-1868096 05A11_rep_D_Bisoprolol_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152329799-1868096 05A11_rep_D_Bisoprolol_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201104465-1877770 09D07_rep_B_Beta-Escina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201104465-1877770 09D07_rep_B_Beta-Escina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170125_016EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/f5/a669b24f6d2e395f0459314b2d5fb7/input_file/SH8_20170125_016EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample037.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/921.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125838271-1863164 04H07_rep_A_Glibenclamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125838271-1863164 04H07_rep_A_Glibenclamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/442.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD1_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007649_032118-1Thr1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201628510-1882005 16D09_rep_C_Diatrizoic_acid_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201628510-1882005 16D09_rep_C_Diatrizoic_acid_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/aps_cysC_P5B11_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (aps_cysC_P5B11_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080389/peak/Peak_List_Files/mLm_CC_Tmem111_E18-5_AT2_Ctl_1_P_15Sep16_Arwen_16-08-17.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151203572-1576294 Batch5_MALME3M_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpMat2_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case10_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case10_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated8hD2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated8hD2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152428544-1576901 Batch1_NCIH1437_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150433695-1864806 02A09_rep_C_Amidopyrinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150433695-1864806 02A09_rep_C_Amidopyrinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114051095-1874812 11G04_rep_D_Ciclesonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114051095-1874812 11G04_rep_D_Ciclesonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081039/ccms_peak/raw/MTBLS293/mtab_R1_Dyhram_2014_1017_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_69_RIN_50.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_69_RIN_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000092221/ccms_peak/LuxWater_2019-2022/2021/Oct/2108917_pos.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092153/peak/Sample0005.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/660.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122012858-1867210 04B09_rep_C_Antazoline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122012858-1867210 04B09_rep_C_Antazoline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1106.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_59.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150735423-1864947 02H11_rep_C_Gentamicine sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150735423-1864947 02H11_rep_C_Gentamicine sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122348269-1879896 15G11_rep_C_Fosinoprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122348269-1879896 15G11_rep_C_Fosinoprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151137529-1924774 3_F10_SNF3_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151137529-1924774 3_F10_SNF3_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152606982-1576982 Batch2_OVCAR4_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O8_id_MSn_positive.mzML at line 21
index 663 is out of bounds for axis 0 with size 663
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/artI_P3H1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (artI_P3H1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_20.mzXML at line 689
Premature end of data in tag peaks line 20201, line 20205, column 3655 (20121114_20.mzXML, line 20205)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_74.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/oppA_#3_P4D12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (oppA_#3_P4D12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190117_ES_H3K_batch14_repA_200.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124907672-1862701 03G09_rep_B_Tropicamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124907672-1862701 03G09_rep_B_Tropicamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201743820-1882062 16H05_rep_C_Ceftibutenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201743820-1882062 16H05_rep_C_Ceftibutenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1456.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1456.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152841101-1868335 06B04_rep_A_Carbarsoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152841101-1868335 06B04_rep_A_Carbarsoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_148.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201626131-1878004 09H10_rep_C_Cephalothin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201626131-1878004 09H10_rep_C_Cephalothin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N11_id_MSn_negative.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM5S005.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114216344-1922857 4_F3_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114216344-1922857 4_F3_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control172_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control172_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151857922-1576638 Batch7_NCIH1993_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114207515-1922849 4_G3_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114207515-1922849 4_G3_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hA3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hA3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153659617-1577516 Batch4_DU145_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153643498-1868712 06C09_rep_C_Roxatidine_Acetate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153643498-1868712 06C09_rep_C_Roxatidine_Acetate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_51_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_51_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113302149-1874473 11A08_rep_B_Chloropyramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113302149-1874473 11A08_rep_B_Chloropyramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-7-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pflA_#1_P4F10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (pflA_#1_P4F10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/speC_P3H3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (speC_P3H3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_08P_A6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/178-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_71.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124056592-1876409 08A01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124056592-1876409 08A01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112710578-1874202 11H08_rep_A_Scopolamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112710578-1874202 11H08_rep_A_Scopolamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C11_id_MSn_positive.mzML at line 21
index 686 is out of bounds for axis 0 with size 686
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152347899-1576869 Batch1_NCIH1437_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202230348-1882286 16C03_rep_D_Donepezil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202230348-1882286 16C03_rep_D_Donepezil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_50.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_50.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_0126_190128215604.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151717602-1576555 Batch7_SKMEL2_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223526418-1870172 01E09_rep_B_Dicyclomine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223526418-1870172 01E09_rep_B_Dicyclomine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145603165-1863925 02D05_rep_A_Ampicillin trihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145603165-1863925 02D05_rep_A_Ampicillin trihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222935668-1869907 01G07_rep_A_Minaprine dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222935668-1869907 01G07_rep_A_Minaprine dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122737849-1867569 05C08_rep_A_Thioguanosineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122737849-1867569 05C08_rep_A_Thioguanosineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121947579-1867190 04B01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121947579-1867190 04B01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EBM010A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151506399-1576446 Batch6_CALU3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201419765-1881911 16F06_rep_C_Rasagilinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201419765-1881911 16F06_rep_C_Rasagilinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122839027-1875821 08H05_rep_A_Tomoxetine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122839027-1875821 08H05_rep_A_Tomoxetine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_22.mzXML at line 689
Premature end of data in tag peaks line 19436, line 19440, column 15941 (20121114_22.mzXML, line 19440)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_024ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/56/b7afb09b07f50bb422b461710d813b/input_file/QC_20170209_024ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_A5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101913627-1869687 07C05_rep_D_Etifenina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101913627-1869687 07C05_rep_D_Etifenina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113724849-1874646 11A03_rep_C_Methazolamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113724849-1874646 11A03_rep_C_Methazolamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180501_ES_H3K_batch4_repC_59.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_102.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ10021459.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223205212-1870019 01F09_rep_B_Oxethazainea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223205212-1870019 01F09_rep_B_Oxethazainea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpTen1_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095362/raw/MS2_VcS_2_17_1_7782.mzML at line 689
Premature end of data in tag chromatogramList line 661455, line 661456, column 1 (MS2_VcS_2_17_1_7782.mzML, line 661456)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G16_id_MSn_positive.mzML at line 21
index 376 is out of bounds for axis 0 with size 376
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoL_#2_P3G1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (nuoL_#2_P3G1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_G3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150657985-1924533 2_B3_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150657985-1924533 2_B3_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165807538-2227516 PAT45.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STE2_50EV_RA4_01_22576.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121254229-1879401 14G02_rep_D_Perindoprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121254229-1879401 14G02_rep_D_Perindoprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7C03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/XYT-37d.mzXML at line 689
Premature end of data in tag peaks line 1860, line 1864, column 3577 (XYT-37d.mzXML, line 1864)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_P_E4E4_AD_31Jan18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210330_AD_80.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122925393-1880158 15D08_rep_D_Olopatadine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122925393-1880158 15D08_rep_D_Olopatadine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_373.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124228172-1862267 03H01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124228172-1862267 03H01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170207_064EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/49/3dee79b45c7aeb03d92074e35ee039/input_file/SH7_20170207_064EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101404761-1869439 07B06_rep_C_Terconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101404761-1869439 07B06_rep_C_Terconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C3_id_MSn_negative.mzML at line 21
index 314 is out of bounds for axis 0 with size 314
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F3_id_negative.mzML at line 21
index 268 is out of bounds for axis 0 with size 268
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201206564-1881811 16F09_rep_B_Valdecoxiba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201206564-1881811 16F09_rep_B_Valdecoxiba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_E2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/238.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_G6_id_MSn_negative.mzML at line 21
index 290 is out of bounds for axis 0 with size 290
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_63.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092019962-1878637 13C03_rep_D_Nandroloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092019962-1878637 13C03_rep_D_Nandroloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122305380-1879863 15C11_rep_C_Fluconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122305380-1879863 15C11_rep_C_Fluconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112045375-1921769 2_E2_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112045375-1921769 2_E2_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123051203-1867719 05B01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123051203-1867719 05B01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rutG_P4B1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (rutG_P4B1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_133_3B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R324h3a.mzML at line 88
Invalid base64-encoded string: number of data characters (5433) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-080_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8F06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/ppp9_hemH_P4G10_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 552, column 10003471 (ppp9_hemH_P4G10_Aquity_pos.mzXML, line 552)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153852676-1577611 Batch6_NCIH1299_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_F5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD4_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/698.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122521545-1867459 05E07_rep_A_Ambroxol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122521545-1867459 05E07_rep_A_Ambroxol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123121340-1875949 08A04_rep_A_Pyridostigmine_iodideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123121340-1875949 08A04_rep_A_Pyridostigmine_iodideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_06_906_prot_42_IMS_15Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nagZ_#1_P4G4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (nagZ_#1_P4G4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNQ149_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD4_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125949182-1863224 04G04_rep_A_Telenzepine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125949182-1863224 04G04_rep_A_Telenzepine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8C07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2A03Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control39_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control39_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_C20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151518603-1924963 4_B10_SNF3_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151518603-1924963 4_B10_SNF3_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151312389-1576351 Batch7_SNB75_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_A3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092957312-1879088 14G08_rep_C_Ramiprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092957312-1879088 14G08_rep_C_Ramiprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET110.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET110.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081544/ccms_peak/20170728_MS1_17k_plasmaspikedPEG_3.mzML at line 689
Premature end of data in tag spectrumList line 67, line 100748, column 1 (20170728_MS1_17k_plasmaspikedPEG_3.mzML, line 100748)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GB3_01_16792.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_A9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112837337-1922183 4_C10_GPR1_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112837337-1922183 4_C10_GPR1_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc052_neg.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc052_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/BeautyProducts_Vol4/BP3_01_17284.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_C7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_H9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201230786-1881829 16D03_rep_B_Pidotimoda.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201230786-1881829 16D03_rep_B_Pidotimoda.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124531446-1862412 03E02_rep_A_Ranitidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124531446-1862412 03E02_rep_A_Ranitidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081757.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/874.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD6_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM6W003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220222_LKM_Plasma_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hpt_P3B12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (hpt_P3B12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std d 001a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201657969-1878028 09H04_rep_C_Dipyronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201657969-1878028 09H04_rep_C_Dipyronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101850140-1869668 07H06_rep_D_Nifuroxazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101850140-1869668 07H06_rep_D_Nifuroxazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/006_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145819228-1864035 02F03_rep_A_Loxapine succinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145819228-1864035 02F03_rep_A_Loxapine succinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD2_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094443/raw/All Egg Mass/2A6E_MSMS.mzML at line 689
Premature end of data in tag indexedmzML line 2, line 17487, column 1 (2A6E_MSMS.mzML, line 17487)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093526/peak/mzML/multiCE/Sa02_Water_POS_MultiNCE.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/shiA_P3E1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (shiA_P3E1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_MA_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/60-4_Ms_25min__GE5_01_4259.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113437711-1922455 2_D11_IZH2_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113437711-1922455 2_D11_IZH2_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223905594-2227693 Healthy8.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/454.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ7_2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M13_id_MSn_negative.mzML at line 21
index 342 is out of bounds for axis 0 with size 342
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K5_id_MSn_negative.mzML at line 21
index 323 is out of bounds for axis 0 with size 323
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_C10_id_negative.mzML at line 21
index 204 is out of bounds for axis 0 with size 204
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124821149-1862664 03E10_rep_B_Metoclopramide_monohydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124821149-1862664 03E10_rep_B_Metoclopramide_monohydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_176.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210108_AD_85.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_11.mzXML at line 689
Premature end of data in tag peaks line 21085, line 21089, column 3654 (20121114_11.mzXML, line 21089)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112106001-1873046 10G05_rep_C_Bendroflumethiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112106001-1873046 10G05_rep_C_Bendroflumethiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_G11_id_positive.mzML at line 21
index 312 is out of bounds for axis 0 with size 312
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123440858-1876110 08F03_rep_B_Fenipentola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123440858-1876110 08F03_rep_B_Fenipentola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4D09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_144.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d3_295_lipid__Po_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 32175, column 1 (SysVirol_IFL001_Cal04RG_d3_295_lipid__Po_Gimli_06Sep13_13-07-01.mzXML, line 32175)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1139.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/579-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101814853-1869640 07D05_rep_D_Pyrazinamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101814853-1869640 07D05_rep_D_Pyrazinamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112329899-1921912 3_G7_GPR1_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112329899-1921912 3_G7_GPR1_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_091b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224357626-1870568 01F02_rep_D_Mupirocinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224357626-1870568 01F02_rep_D_Mupirocinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111550393-1871548 10D06_rep_B_Piperacillin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111550393-1871548 10D06_rep_B_Piperacillin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ7_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (18).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145817945-1864034 02E06_rep_A_Perphenazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145817945-1864034 02E06_rep_A_Perphenazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007608_032118-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ6_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150417212024.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GG3_01_16980.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person24_RBC_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 81 (Person24_RBC_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5G07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_B5_id_negative.mzML at line 21
index 266 is out of bounds for axis 0 with size 266
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ1_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152209713-1576791 Batch2_NCIH522_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_F8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12only_Replicate3_Level1_MSMS_pos.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115011428-1875258 12E01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115011428-1875258 12E01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124958272-1876800 12D09_rep_C_Nimodipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124958272-1876800 12D09_rep_C_Nimodipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/912.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hB1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hB1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_P4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101808713-1869635 07A06_rep_D_Cefaclor_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101808713-1869635 07A06_rep_D_Cefaclor_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111911095-1921689 2_F7_GAP1_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111911095-1921689 2_F7_GAP1_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100906275-1869201 07B08_rep_A_Vancomycin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100906275-1869201 07B08_rep_A_Vancomycin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample159.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_A4_160424180140.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-faux (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3A12_160529010207.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ugpA_P3F5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (ugpA_P3F5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D1_preFOS_1_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123904666-1876320 08H09_rep_C_Dexfenfluramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123904666-1876320 08H09_rep_C_Dexfenfluramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124258247-1876507 08A11_rep_D_Nicotinamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124258247-1876507 08A11_rep_D_Nicotinamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180829_ES_H3K_batch11_repB_159.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_08P_C2_id_negative.mzML at line 21
index 252 is out of bounds for axis 0 with size 252
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_B2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_136.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-qc_elow (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125259023-1876935 12C05_rep_D_Metyraponea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125259023-1876935 12C05_rep_D_Metyraponea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J19_id_MSn_positive.mzML at line 21
index 537 is out of bounds for axis 0 with size 537
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB2A02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J8_id_MSn_positive.mzML at line 21
index 535 is out of bounds for axis 0 with size 535
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122032544-1867226 04A01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122032544-1867226 04A01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J13_id_MSn_negative.mzML at line 21
index 373 is out of bounds for axis 0 with size 373
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiH_P3C4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (thiH_P3C4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Bacillus_subtilis_PY79_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123428519-1876100 08E07_rep_B_Rimantadine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123428519-1876100 08E07_rep_B_Rimantadine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD1_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ7_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123434761-1876105 08D03_rep_B_Etofenamateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123434761-1876105 08D03_rep_B_Etofenamateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152756836-1868301 06A02_rep_A_Testosterone_propionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152756836-1868301 06A02_rep_A_Testosterone_propionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/002_1010_1_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mltA_#1_P4B8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (mltA_#1_P4B8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153125624-1868460 06H01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153125624-1868460 06H01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_19080521_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075482.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/88.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121402579-1866921 04C11_rep_B_Fendiline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121402579-1866921 04C11_rep_B_Fendiline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153118959-1577238 Batch3_NCIH460DNP53_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_2958.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_2958.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124153801-1862240 03D03_rep_A_Thalidomideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124153801-1862240 03D03_rep_A_Thalidomideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153710336-1577525 Batch4_ASPC1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_PB_male_2022_1017_Michael_neg-0.0064.mzML at line 689
Premature end of data in tag binary line 27901, line 27901, column 326273 (4_PB_male_2022_1017_Michael_neg-0.0064.mzML, line 27901)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201127958-1881782 16A09_rep_B_Enrofloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201127958-1881782 16A09_rep_B_Enrofloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD3_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_94.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1028.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8A12_160604210951.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152941892-1577163 Batch3_NCIH322M_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G20_id_MSn_negative.mzML at line 21
index 346 is out of bounds for axis 0 with size 346
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-meoh.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET112.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET112.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092848418-1879033 14A04_rep_C_Penbutolol_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092848418-1879033 14A04_rep_C_Penbutolol_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pldA_P4F2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (pldA_P4F2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121845470-1879666 15D04_rep_B_Mitotanea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121845470-1879666 15D04_rep_B_Mitotanea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130401151-1877442 13E08_rep_B_Fursultiamine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130401151-1877442 13E08_rep_B_Fursultiamine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD4_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150520962-1924450 1_H3_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150520962-1924450 1_H3_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152424726-1576898 Batch2_NCIH596_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_F9_01_12171.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151518491-1576455 Batch6_HCC1937_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190341739-1889803 Nb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR33h3a.mzML at line 689
Opening and ending tag mismatch: binary line 219850 and spectrum, line 219850, column 8719 (pBpumR33h3a.mzML, line 219850)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111729828-1921602 1_B3_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111729828-1921602 1_B3_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_RBC_24h_POS.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer3_RBC_24h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_12.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_12.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample046_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152522263-1576945 Batch1_NCIH1838_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murP_P3B3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024988 (murP_P3B3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V3_EDTAk2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/006_Ammonia_Day11_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_D3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113328515-1922394 1_B1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113328515-1922394 1_B1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_3_Dorsal_skin_HO_control_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_3_Dorsal_skin_HO_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample004.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130828478-1877654 13G11_rep_C_Torsemideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130828478-1877654 13G11_rep_C_Torsemideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123813478-1876279 08C02_rep_C_Reboxetine_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123813478-1876279 08C02_rep_C_Reboxetine_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/902.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202558889-1878449 10G09_rep_A_Hexylcaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202558889-1878449 10G09_rep_A_Hexylcaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G5_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150350988-1924374 1_C4_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150350988-1924374 1_C4_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_55_AC+_54.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpMat2_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_64.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240408_pluskal_enammol_5004_A2_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample27n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_E2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d3_282_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 42452, column 1 (SysVirol_IFL001_1918_d3_282_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 42452)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152250007-1576823 Batch2_NCIH2122_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_C11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123754639-1876264 08D04_rep_C_Zaleplona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123754639-1876264 08D04_rep_C_Zaleplona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201802800-1878077 09F10_rep_D_Hexestrolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201802800-1878077 09F10_rep_D_Hexestrolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_19.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_19.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153023713-1577196 Batch3_NCIH460DNP53_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1272.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1272.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123610681-1876182 08A01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123610681-1876182 08A01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009475_IBD200_E8_B12.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated8hC1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated8hC1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111834405-1921658 2_F9_GAP1_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111834405-1921658 2_F9_GAP1_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R23h2a.mzML at line 689
Opening and ending tag mismatch: binary line 127954 and scanList, line 127965, column 22 (pBlichMO17R23h2a.mzML, line 127965)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222834935-1869861 01H02_rep_A_Todralazine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222834935-1869861 01H02_rep_A_Todralazine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_48.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111508601-1921095 1_H9_GAP1_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111508601-1921095 1_H9_GAP1_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2F05P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152404242-1576882 Batch2_NCIH596_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224323958-1870541 01B08_rep_D_Levodopaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224323958-1870541 01B08_rep_D_Levodopaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F11_id_MSn_negative.mzML at line 21
index 320 is out of bounds for axis 0 with size 320
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123011972-1867691 05F03_rep_B_Debrisoquin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123011972-1867691 05F03_rep_B_Debrisoquin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_G10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111635041-1921555 1_E5_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111635041-1921555 1_E5_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_02_leg_muscle_control_oral_POS.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_02_leg_muscle_control_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121543537-1866998 04C09_rep_B_Vinpocetinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121543537-1866998 04C09_rep_B_Vinpocetinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M20_id_MSn_positive.mzML at line 21
index 644 is out of bounds for axis 0 with size 644
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GC10_01_16889.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092752667-1878989 14B02_rep_B_Moricizine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092752667-1878989 14B02_rep_B_Moricizine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224213036-1870485 01A11_rep_D_Sulfaguanidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224213036-1870485 01A11_rep_D_Sulfaguanidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200802489-1881630 16C04_rep_A_1,8-Dihydroxyanthraquinoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200802489-1881630 16C04_rep_A_1,8-Dihydroxyanthraquinoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/295.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152730693-1577052 Batch3_MDAMB157_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201713944-1878040 09H03_rep_C_Benzocainea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201713944-1878040 09H03_rep_C_Benzocainea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_106b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123706497-1876226 08G06_rep_C_Cytarabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123706497-1876226 08G06_rep_C_Cytarabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Blank_2_B-A1_1_5814.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123102068-1875933 08B06_rep_A_Tenatoprazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123102068-1875933 08B06_rep_A_Tenatoprazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170209_063ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/df/359f28798ee64aa5d62ac73f8152bb/input_file/SH9_20170209_063ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153803232-1577569 Batch7_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087354/raw/190814_Serin_OP3.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121929493-1867176 04G06_rep_C_Bupivacaine_hydrochloride_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121929493-1867176 04G06_rep_C_Bupivacaine_hydrochloride_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201921803-1882139 16H03_rep_D_Pemetrexed_disodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201921803-1882139 16H03_rep_D_Pemetrexed_disodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007682_032118-1CRP6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153314225-1577331 Batch3_KNS62_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_131_1C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/912.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-4d.mzXML at line 689
Premature end of data in tag peaks line 9517, line 9521, column 24055 (YnYn-4d.mzXML, line 9521)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153131205-1577248 Batch5_NCIH727_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100757189-1869146 07E11_rep_A_Troloxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100757189-1869146 07E11_rep_A_Troloxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_G8_id_negative.mzML at line 21
index 222 is out of bounds for axis 0 with size 222
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222852250-1869874 01D06_rep_A_Dapsoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222852250-1869874 01D06_rep_A_Dapsoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_19073146_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151602695-1924996 4_G4_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151602695-1924996 4_G4_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153029121-1577200 Batch3_SKMEL5_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151842658-1576625 Batch7_NCIH209_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_C3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190205_ES_H3K_batch15C_repA_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_141.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_141.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122924100-1880157 15C10_rep_D_Vardenafilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122924100-1880157 15C10_rep_D_Vardenafilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007549_031618-1CRP2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E12_id_negative.mzML at line 21
index 249 is out of bounds for axis 0 with size 249
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pfkA_#1_P6D7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (pfkA_#1_P6D7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101222324-1869357 07F04_rep_B_Phenacetina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101222324-1869357 07F04_rep_B_Phenacetina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pdxB_P3C9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (pdxB_P3C9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/206.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151843999-1867871 05C06_rep_C_Clenbuterol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151843999-1867871 05C06_rep_C_Clenbuterol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153442727-1868615 06G04_rep_C_Metrizamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153442727-1868615 06G04_rep_C_Metrizamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201052964-1881756 16A01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201052964-1881756 16A01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_H8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MIXEE_20170125_070EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/99/046335ece5c286c53192bd66730bb5/input_file/MIXEE_20170125_070EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170209_040ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/5d/bce598290b2206605d256c8c79c21e/input_file/SH8_20170209_040ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000091795/peak/bile_acid_modifications_all_600k_renumbered.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_A8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_14_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hemF_P3H9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (hemF_P3H9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111752732-1921622 1_A8_GAP1_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111752732-1921622 1_A8_GAP1_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/207-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlich1001R324h3a.mzML at line 689
Opening and ending tag mismatch: binary line 219796 and activation, line 219798, column 28 (pBlich1001R324h3a.mzML, line 219798)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113942701-1874757 11B09_rep_D_Nadololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113942701-1874757 11B09_rep_D_Nadololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET24.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET24.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/16032021_Batch06_QC_ 4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222929102-1869902 01H06_rep_A_Adiphenine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222929102-1869902 01H06_rep_A_Adiphenine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122229933-1879836 15B10_rep_C_Phentermine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122229933-1879836 15B10_rep_C_Phentermine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_A6_id_positive.mzML at line 21
index 314 is out of bounds for axis 0 with size 314
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007637_032118-0.01Thr3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample100_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124818756-1876726 12B06_rep_C_Aminohippuric_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124818756-1876726 12B06_rep_C_Aminohippuric_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_159.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121712236-1867068 04D01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121712236-1867068 04D01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087772/ccms_peak/190516_LP_JH_Blank6_pos.mzML at line 689
Extra content at the end of the document, line 278304, column 1 (190516_LP_JH_Blank6_pos.mzML, line 278304)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M8_id_negative.mzML at line 21
index 245 is out of bounds for axis 0 with size 245
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111809424-1921636 2_H7_GAP1_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111809424-1921636 2_H7_GAP1_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152324120-1576850 Batch2_NCIH358_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151141874-1576276 Batch5_PC14PE6_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092108597-1878674 14C04_rep_A_Naftifine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092108597-1878674 14C04_rep_A_Naftifine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MSB01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093244355-1879216 14C02_rep_C_Phensuximidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093244355-1879216 14C02_rep_C_Phensuximidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201038139-1881745 16A07_rep_B_Amlexanoxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201038139-1881745 16A07_rep_B_Amlexanoxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1786.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1786.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201012284-1881726 16E06_rep_B_Phenothiazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201012284-1881726 16E06_rep_B_Phenothiazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121910946-1879685 15C08_rep_B_Fludarabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121910946-1879685 15C08_rep_B_Fludarabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007695_032218-5CRP3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112341179-1921922 3_E1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112341179-1921922 3_E1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_A11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M5_id_MSn_positive.mzML at line 21
index 693 is out of bounds for axis 0 with size 693
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M10_id_MSn_positive.mzML at line 21
index 441 is out of bounds for axis 0 with size 441
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ssuD_P4G6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ssuD_P4G6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hcaE_P4C1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (hcaE_P4C1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_174_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153349042-1577359 Batch5_HDQP1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E3_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/deoA_P3F1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (deoA_P3F1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151711551-1576550 Batch7_UMC11_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201210766-1877818 09E06_rep_B_Ibutilide_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201210766-1877818 09E06_rep_B_Ibutilide_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130004976-1863237 04G10_rep_A_Amodiaquin_dihydrochloride_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130004976-1863237 04G10_rep_A_Amodiaquin_dihydrochloride_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person19_RBC_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 81 (Person19_RBC_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150324515-1864753 02D11_rep_B_Triamcinoloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150324515-1864753 02D11_rep_B_Triamcinoloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153740336-1577550 Batch6_NCIH82_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/799.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113634115-1922555 2_E2_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113634115-1922555 2_E2_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Spombe_cell_sample1_POS.mzXML at line 689
attributes construct error, line 38, column 79 (Spombe_cell_sample1_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_0124_190124221239.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d8_279_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 41865, column 1 (SysVirol_IFT001_1918_d8_279_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 41865)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113305570-1922374 1_A1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113305570-1922374 1_A1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151529103-1576464 Batch6_CALU1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_15_Blood_CMC_control_POS.mzXML at line 689
attributes construct error, line 38, column 91 (Mouse_15_Blood_CMC_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202122431-1878231 09A03_rep_D_Gefitinibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202122431-1878231 09A03_rep_D_Gefitinibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M7_id_negative.mzML at line 21
index 256 is out of bounds for axis 0 with size 256
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151925529-1576661 Batch7_NCIH209_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152958757-1868396 06H09_rep_A_Felodipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152958757-1868396 06H09_rep_A_Felodipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/65-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113313087-1874482 11A06_rep_B_Piromidic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113313087-1874482 11A06_rep_B_Piromidic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LY201.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD3_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR09/withKBr/140311ACR4H.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201730734-1882052 16E03_rep_C_Anagrelideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201730734-1882052 16E03_rep_C_Anagrelideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152409490-1868126 05C11_rep_D_Clozapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152409490-1868126 05C11_rep_D_Clozapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153752487-1577560 Batch6_MDAMB435S_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/chrR_P3F7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (chrR_P3F7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094430/license/198008 PTFI Data Use Agreement_March252024-cmc.docx at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYH002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glmU_P3A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (glmU_P3A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113200876-1874424 11A11_rep_B_Sulconazole_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113200876-1874424 11A11_rep_B_Sulconazole_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD5_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074715.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122102987-1867250 04H09_rep_C_Quinacrine_dihydrochloride_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122102987-1867250 04H09_rep_C_Quinacrine_dihydrochloride_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ1_8 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113812987-1922641 3_H5_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113812987-1922641 3_H5_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S25_0123_190123220813.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151110363-1924751 3_G2_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151110363-1924751 3_G2_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD2_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S82.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S82.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121756588-1879629 15F11_rep_B_Bifonazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121756588-1879629 15F11_rep_B_Bifonazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Streptomyces_sp_OS306Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw6_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/423.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151947218-1867921 05D10_rep_C_Dextromethorphan_hydrobromide_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151947218-1867921 05D10_rep_C_Dextromethorphan_hydrobromide_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8C08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_4_B_rep_3_B-C7_1_5659.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8B04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152234666-1868054 05C01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152234666-1868054 05C01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122438735-1879934 15A05_rep_C_Sulbactama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122438735-1879934 15A05_rep_C_Sulbactama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200558813-1881539 16F07_rep_A_Flumethasone_pivalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200558813-1881539 16F07_rep_A_Flumethasone_pivalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8C09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arnA_#1_P4A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (arnA_#1_P4A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101735074-1869607 07F02_rep_C_Pirenperonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101735074-1869607 07F02_rep_C_Pirenperonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223421342-1870122 01D06_rep_B_Dapsoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223421342-1870122 01D06_rep_B_Dapsoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121729766-1867082 04D03_rep_C_Indomethacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121729766-1867082 04D03_rep_C_Indomethacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample224.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224224545-1870494 01F06_rep_D_Acetohexamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224224545-1870494 01F06_rep_D_Acetohexamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S25_0126_190128233540.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malS_P3G2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (malS_P3G2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_Batch3_OW2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2C02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111610344-1871563 10D04_rep_B_Demeclocycline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111610344-1871563 10D04_rep_B_Demeclocycline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007687_032218-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GC2_01_11948.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121940453-1879707 15C11_rep_B_Fluconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121940453-1879707 15C11_rep_B_Fluconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152925370-1577149 Batch3_A498_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sufC_#1_P3E3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (sufC_#1_P3E3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111632673-1871580 10A10_rep_B_Sulfanilamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111632673-1871580 10A10_rep_B_Sulfanilamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150925282-1924660 2_F11_RGT2_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150925282-1924660 2_F11_RGT2_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3B05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153615955-1868689 06B01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153615955-1868689 06B01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112331123-1921913 3_G7_GPR1_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112331123-1921913 3_G7_GPR1_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A19_id.mzML at line 21
index 597 is out of bounds for axis 0 with size 597
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153027696-1577199 Batch3_BTFC905_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_C12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_C12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_F3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_94.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD6_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/589.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122231265-1879837 15B10_rep_C_Phentermine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122231265-1879837 15B10_rep_C_Phentermine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3D03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151627651-1576513 Batch7_HCC38_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201505436-1877946 09G06_rep_C_Methyl_benzethonium_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201505436-1877946 09G06_rep_C_Methyl_benzethonium_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person30_RBC_elder_POS.mzXML at line 689
attributes construct error, line 41, column 81 (Person30_RBC_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114505954-1875019 12G07_rep_A_Altretamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114505954-1875019 12G07_rep_A_Altretamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153106345-1577228 Batch3_NCIH661_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Daidzein_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124614523-1876662 09B02_rep_A_Glimepiridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124614523-1876662 09B02_rep_A_Glimepiridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113811201-1874683 11E07_rep_C_Ethynylestradiol_3-methyl_etherb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113811201-1874683 11E07_rep_C_Ethynylestradiol_3-methyl_etherb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_dilute_190201073659.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample227.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_4_P_ref_2_B-E2_1_5545.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111650309-1921568 1_B7_GAP1_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111650309-1921568 1_B7_GAP1_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093003623-1879093 14F02_rep_C_Spaglumic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093003623-1879093 14F02_rep_C_Spaglumic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybjG_P4F2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (ybjG_P4F2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L22_id_MSn_positive.mzML at line 21
index 512 is out of bounds for axis 0 with size 512
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122303499-1867347 04E10_rep_D_Pyrilamine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122303499-1867347 04E10_rep_D_Pyrilamine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0024_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151331942-1924873 3_H8_SNF3_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151331942-1924873 3_H8_SNF3_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_383.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224141152-1870460 01D02_rep_D_Chloramphenicolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224141152-1870460 01D02_rep_D_Chloramphenicolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_RBC_1h_POS.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer2_RBC_1h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_E8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/243.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114656353-1875102 12H09_rep_B_Urosiola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114656353-1875102 12H09_rep_B_Urosiola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_78.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165853316-2227558 PAT37.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201322604-1877871 09E02_rep_B_Pranoprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201322604-1877871 09E02_rep_B_Pranoprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B24_id.mzML at line 21
index 573 is out of bounds for axis 0 with size 573
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_H3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/043_47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100602428-1869053 99a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100602428-1869053 99a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121809299-1867113 04B10_rep_C_Ethacrynic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121809299-1867113 04B10_rep_C_Ethacrynic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person14_RBC_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Person14_RBC_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152044919-1576724 Batch1_HCC1937_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_338.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/471-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MSA06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114245525-1874905 12H03_rep_A_Toremifeneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114245525-1874905 12H03_rep_A_Toremifeneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009589_IBD200_E15_A5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HaCaT_1_RESV_200uM_POS.mzXML at line 689
attributes construct error, line 38, column 83 (HaCaT_1_RESV_200uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltA_P3F1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (gltA_P3F1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085103/peak/mzML/JB-182_100um.mzML at line 689
Premature end of data in tag binary line 220233, line 220233, column 10753 (JB-182_100um.mzML, line 220233)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100706114-1869105 07D02_rep_A_Fluoxetine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100706114-1869105 07D02_rep_A_Fluoxetine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078960/ccms_peak/SoceGT47-Pmix_SPL-P124-6+5_RA4_01_20440.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091907875-1878581 13H07_rep_D_Alcuronium_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091907875-1878581 13H07_rep_D_Alcuronium_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.hyg_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBsubR124h2a.mzML at line 689
Opening and ending tag mismatch: binary line 114694 and spectrum, line 114729, column 20 (pBsubR124h2a.mzML, line 114729)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101055741-1869288 07H02_rep_B_Hexetidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101055741-1869288 07H02_rep_B_Hexetidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201231213-1877833 09C07_rep_B_Nisoldipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201231213-1877833 09C07_rep_B_Nisoldipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080949/ccms_peak/peaks/3injections_inj1_NEG.mzXML at line 689
attributes construct error, line 41, column 76 (3injections_inj1_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151942564-1576675 Batch1_UMUC3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_Batch03_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201424118-1877916 09G07_rep_C_Chlorcyclizine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201424118-1877916 09G07_rep_C_Chlorcyclizine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fdoG_P3G4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (fdoG_P3G4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_E2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C11_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pabB_#1_P3E6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (pabB_#1_P3E6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/114.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2F04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N13_id_MSn_positive.mzML at line 21
index 373 is out of bounds for axis 0 with size 373
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153303020-1577322 Batch4_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/493.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNQ766_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_08P_A12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_5_P_rep_2_B-E8_1_5680.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/blank_out.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/664.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153202451-1577273 Batch4_A427_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111625763-1921547 1_E4_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111625763-1921547 1_E4_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Positive_Veh_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151257199-1924843 3_B7_SNF3_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151257199-1924843 3_B7_SNF3_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_H4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bioD_P4H11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (bioD_P4H11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1B04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124944940-1876790 12B10_rep_C_Adrenosteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124944940-1876790 12B10_rep_C_Adrenosteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223745918-2227623 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD4_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_C11_id_negative.mzML at line 21
index 221 is out of bounds for axis 0 with size 221
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ilvD_P4H3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (ilvD_P4H3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111751476-1872027 10C06_rep_C_Spiramycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111751476-1872027 10C06_rep_C_Spiramycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101448562-1869474 07A04_rep_C_Rofecoxibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101448562-1869474 07A04_rep_C_Rofecoxibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/deoC_#2_P4D4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (deoC_#2_P4D4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GA9_01_16782.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153709315-1868733 06B11_rep_C_Erlotinibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153709315-1868733 06B11_rep_C_Erlotinibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR07/WithKBr/140311P8.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wecE_#1_P5E11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (wecE_#1_P5E11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/807.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ttdB_P4B2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (ttdB_P4B2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nagZ_#1_P4G4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (nagZ_#1_P4G4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153316698-1577333 Batch4_SW780_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_D6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J14_id_MSn_negative.mzML at line 21
index 315 is out of bounds for axis 0 with size 315
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_sample03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_A9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122759395-1867587 05C07_rep_A_Maprotiline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122759395-1867587 05C07_rep_A_Maprotiline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220312_LKM_adipocytes_37C_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlD3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraControlD3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD6_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125252225-1876930 12G04_rep_D_Pralidoxime_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125252225-1876930 12G04_rep_D_Pralidoxime_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223253479-1870055 01E03_rep_B_Moxisylyte hydrochoridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223253479-1870055 01E03_rep_B_Moxisylyte hydrochoridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC06.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113150585-1874416 11B07_rep_B_Suprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113150585-1874416 11B07_rep_B_Suprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8F06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_phospho_HFD21_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O9_id_negative.mzML at line 21
index 241 is out of bounds for axis 0 with size 241
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case236_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case236_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample218.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_G7_id_positive.mzML at line 21
index 402 is out of bounds for axis 0 with size 402
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_2_P_rep_1_B-D1_1_5849.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/R48_I_ESI+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190123_ES_H3K_batch15_repB_128.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170127_052ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/04/9959d84720c9ce4c4995df0f303856/input_file/SH9_20170127_052ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD3_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007492_031618-Unst3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092410036-1878816 14H01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092410036-1878816 14H01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088638/raw/Original experiment/Intracellular/24h exposure/NonPolar_Fraction_ESI-/MS1/I24B1_NP_NEG.mzML at line 689
Premature end of data in tag binary line 87016, line 87016, column 2875 (I24B1_NP_NEG.mzML, line 87016)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152059568-1867980 05B07_rep_C_Chlormezanonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152059568-1867980 05B07_rep_C_Chlormezanonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153415788-1577381 Batch5_NCIH1650_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GH5_01_11564.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/002_CRa_H9M5_M470_Pool_01_low_neg.mzXML at line 689
Premature end of data in tag msRun line 5, line 29343, column 1 (002_CRa_H9M5_M470_Pool_01_low_neg.mzXML, line 29343)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/793.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098254/updates/2025-06-18_chitival_73cdffbf/raw/GM(-)-LCMS-24M008-RD-GNPS/GM(-)-24M008-G7_025.mzML at line 689
Premature end of data in tag fileChecksum line 67525, line 67525, column 42 (GM(-)-24M008-G7_025.mzML, line 67525)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_blank_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case213_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case213_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/20221212_carryover_test_noISTD_PLASMA_sample05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151033684-1924719 3_E7_SNF3_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151033684-1924719 3_E7_SNF3_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_176.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-043.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-043.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroG_#1_P5C10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (aroG_#1_P5C10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw6_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case246_neg.mzXML at line 689
attributes construct error, line 37, column 70 (Case246_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151947649-1576679 Batch1_HCC1395_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113112414-1922276 1_B9_IZH2_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113112414-1922276 1_B9_IZH2_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153857353-1577615 Batch7_EKVX_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087772/ccms_peak/190516_LP_JH_Blank7_pos.mzML at line 689
XML declaration allowed only at the start of the document, line 470, column 3898 (190516_LP_JH_Blank7_pos.mzML, line 470)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B01P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152205919-1576788 Batch1_HCC70_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170125_032EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ae/e89c24b27856317d97f8e9e746fdb8/input_file/MMW4_20170125_032EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_F9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201246676-1881841 16B08_rep_B_Tolcaponea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201246676-1881841 16B08_rep_B_Tolcaponea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Blank_4_B-A1_1_5684.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_130b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123237301-1876010 08D11_rep_B_Zopiclonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123237301-1876010 08D11_rep_B_Zopiclonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Plancto_1392.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case153_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case153_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092659134-1878948 14G06_rep_B_Verteporfina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092659134-1878948 14G06_rep_B_Verteporfina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150536222-1864855 02B03_rep_C_Zimelidine dihydrochloride monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150536222-1864855 02B03_rep_C_Zimelidine dihydrochloride monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112955159-1922214 1_H7_IZH2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112955159-1922214 1_H7_IZH2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151330245-1576366 Batch6_OVCAR3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092259/peak/Sample0009.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112105936-1921787 2_B5_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112105936-1921787 2_B5_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S93.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S93.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp2/20180309173101525-1989049 wound 5da.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151136950-1576272 Batch5_PC14PE6_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151641749-1576525 Batch7_7860_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123217529-1867788 05H03_rep_B_Ketanserin_tartrate_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123217529-1867788 05H03_rep_B_Ketanserin_tartrate_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124959579-1876801 12D09_rep_C_Nimodipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124959579-1876801 12D09_rep_C_Nimodipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124615997-1862564 03A07_rep_B_Mafenide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124615997-1862564 03A07_rep_B_Mafenide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210120_AD_79.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person3_RBC_POS.mzXML at line 689
attributes construct error, line 38, column 71 (Person3_RBC_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ykgF_#1_P4C3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (ykgF_#1_P4C3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_B6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_B6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151629508-1925019 4_C11_SNF3_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151629508-1925019 4_C11_SNF3_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201153359-1881801 16C03_rep_B_Donepezil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201153359-1881801 16C03_rep_B_Donepezil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101743637-1869614 07F08_rep_D_Piracetamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101743637-1869614 07F08_rep_D_Piracetamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_45_RIN_49.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_45_RIN_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1561.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1561.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_2_P_rep_2_B-B5_1_5647.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folX_#1_P3H4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (folX_#1_P3H4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_32_2022_1003_Michael_leming_liver_neg-0.0058.mzML at line 689
Premature end of data in tag binary line 13618, line 13618, column 284575 (3_32_2022_1003_Michael_leming_liver_neg-0.0058.mzML, line 13618)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165857510-2227562 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNS615_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/763.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121224347-1879379 14F09_rep_D_Sarafloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121224347-1879379 14F09_rep_D_Sarafloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092119003-1878682 14E02_rep_A_(S)-propranolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092119003-1878682 14E02_rep_A_(S)-propranolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_D5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200840201-1881658 16B09_rep_A_Altrenogestb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200840201-1881658 16B09_rep_A_Altrenogestb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GD8_01_11504.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122523671-1879969 15G05_rep_C_Olmesartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122523671-1879969 15G05_rep_C_Olmesartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153120126-1577239 Batch3_NCIH460DNP53_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hB2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hB2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case255_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case255_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170209_038ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/3e/b9d210dd94c80d0bd12e0fe6ae660b/input_file/SH9_20170209_038ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GF11_01_12158.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/938.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/upp_P4H2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (upp_P4H2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153434270-1577396 Batch4_SW156_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124020825-1876381 08H01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124020825-1876381 08H01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/291.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152140849-1868013 05H11_rep_C_Hesperidin_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152140849-1868013 05H11_rep_C_Hesperidin_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088138/raw/210916_tanaka11.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_10_NOR_30.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_10_NOR_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130814787-1877643 13A08_rep_C_Gestrinonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130814787-1877643 13A08_rep_C_Gestrinonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GC1_01_17038.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_blank_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2L003C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152924175-1577148 Batch3_A498_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222807085-1869840 01D09_rep_A_Hexamethonium dibromide dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222807085-1869840 01D09_rep_A_Hexamethonium dibromide dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121338034-1866903 04A05_rep_B_Glutethimide,_para-aminob.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121338034-1866903 04A05_rep_B_Glutethimide,_para-aminob.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_47_AC+_54.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GD10_01_12124.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw3_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121925592-1867173 04B06_rep_C_Niflumic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121925592-1867173 04B06_rep_C_Niflumic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130255171-1877391 13G04_rep_B_Isometheptene_mucatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130255171-1877391 13G04_rep_B_Isometheptene_mucatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_low.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/94.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_11_Blood_Ma_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 87 (Mouse_11_Blood_Ma_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123746969-1876258 08B04_rep_C_Troglitazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123746969-1876258 08B04_rep_C_Troglitazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/16032021_Batch06_QC_ 1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GE4_01_17195.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/glnL_purL_P5G10_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 552, column 10022462 (glnL_purL_P5G10_Aquity_pos.mzXML, line 552)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_G2_id_negative.mzML at line 21
index 213 is out of bounds for axis 0 with size 213
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_B8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_B8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113035733-1922245 1_C7_IZH2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113035733-1922245 1_C7_IZH2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112735717-1874222 11H01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112735717-1874222 11H01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_G4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/004_Soil_WaterIntra_1_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/ileL-leuL_yjeH_P4F11_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024898 (ileL-leuL_yjeH_P4F11_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123307726-1876034 08B10_rep_B_Lacidipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123307726-1876034 08B10_rep_B_Lacidipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150842310-1864999 02F07_rep_D_Astemizoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150842310-1864999 02F07_rep_D_Astemizoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201358508-1881895 16F06_rep_B_Rasagilinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201358508-1881895 16F06_rep_B_Rasagilinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100434561-1868983 06D07_rep_D_Digitoxigenina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100434561-1868983 06D07_rep_D_Digitoxigenina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tdk_P5C3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (tdk_P5C3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_36_Blank.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_36_Blank.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101856325-1869673 07C02_rep_D_Vigabatrin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101856325-1869673 07C02_rep_D_Vigabatrin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201454122-1881937 16A11_rep_C_Troxipidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201454122-1881937 16A11_rep_C_Troxipidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009524_IBD200_E11_B6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD4_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H7_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130739346-1877614 13G05_rep_C_Nifurtimoxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130739346-1877614 13G05_rep_C_Nifurtimoxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2A08P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121406658-1866924 04D02_rep_B_Vincaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121406658-1866924 04D02_rep_B_Vincaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153446537-1577406 Batch5_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/307.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201858377-1878119 09F04_rep_D_Promazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201858377-1878119 09F04_rep_D_Promazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_200.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2E05Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124650348-1862591 03H05_rep_B_Chlorphensin_carbamateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124650348-1862591 03H05_rep_B_Chlorphensin_carbamateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125934019-1863211 04F09_rep_A_Fipexide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125934019-1863211 04F09_rep_A_Fipexide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/183-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124858315-1876755 12H11_rep_C_Aminocaproic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124858315-1876755 12H11_rep_C_Aminocaproic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125211672-1876899 12F05_rep_C_Flucytosinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125211672-1876899 12F05_rep_C_Flucytosinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_C7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093210336-1879189 14F10_rep_C_Nialamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093210336-1879189 14F10_rep_C_Nialamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007547_031618-1CRP1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153455091-1577413 Batch4_NCIH810_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_15102101_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Bacillus_polymyxa_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_0126_190128222920.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lsrD_#1_P5H4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (lsrD_#1_P5H4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125222120-1876907 12B03_rep_C_Flubendazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125222120-1876907 12B03_rep_C_Flubendazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153813743-1577578 Batch6_MDAMB435S_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114143031-1874854 11H05_rep_D_Theobrominea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114143031-1874854 11H05_rep_D_Theobrominea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124916673-1862708 03E07_rep_B_Meclofenamic_acid_sodium_salt_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124916673-1862708 03E07_rep_B_Meclofenamic_acid_sodium_salt_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111547714-1871546 10B02_rep_B_Sulfaquinoxaline_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111547714-1871546 10B02_rep_B_Sulfaquinoxaline_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1039.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100400410-1868956 06C05_rep_D_Cephalosporanic_acid,_7-aminob.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100400410-1868956 06C05_rep_D_Cephalosporanic_acid,_7-aminob.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121525548-1879513 15B05_rep_A_Anethole-trithioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121525548-1879513 15B05_rep_A_Anethole-trithioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202131958-1882240 16F06_rep_D_Rasagilineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202131958-1882240 16F06_rep_D_Rasagilineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I7_id_MSn_positive.mzML at line 21
index 481 is out of bounds for axis 0 with size 481
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/005_Urea_Day2_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121456443-1866962 04E04_rep_B_Homochlorcyclizine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121456443-1866962 04E04_rep_B_Homochlorcyclizine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151425679-1924919 4_E3_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151425679-1924919 4_E3_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_sp_WIAI04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_40x_MSMS_2022_1006_Michael_pos-0010.mzML at line 689
Premature end of data in tag binary line 66275, line 66275, column 3107619 (pooled_40x_MSMS_2022_1006_Michael_pos-0010.mzML, line 66275)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125958945-1877258 13C04_rep_A_Dimaprit_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125958945-1877258 13C04_rep_A_Dimaprit_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150328426-1864756 02A04_rep_B_Edrophonium chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150328426-1864756 02A04_rep_B_Edrophonium chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170209_022ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/0f/13ea34c7a4edf1897704b55ddb039e/input_file/SH8_20170209_022ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124452630-1876601 09E06_rep_A_Ibutilide_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124452630-1876601 09E06_rep_A_Ibutilide_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122831020-1880115 15A02_rep_D_Buspirone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122831020-1880115 15A02_rep_D_Buspirone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_B4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113722601-1874644 11C01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113722601-1874644 11C01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111713945-1921588 1_D5_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111713945-1921588 1_D5_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114803087-1875154 12B04_rep_B_Felbinaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114803087-1875154 12B04_rep_B_Felbinaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130757782-1877629 13D06_rep_C_Fluvoxamine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130757782-1877629 13D06_rep_C_Fluvoxamine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/48-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153151190-1577264 Batch4_A427_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arsB_P4A2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (arsB_P4A2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tdcE_P3A5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (tdcE_P3A5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113241475-1922353 1_G4_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113241475-1922353 1_G4_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083647/peak/mzxml_files/plate_04/00077E93A0.mzXML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (00077E93A0.mzXML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101310948-1869396 07B03_rep_B_Nitrofuralb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101310948-1869396 07B03_rep_B_Nitrofuralb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-blank (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113941473-1874756 11B09_rep_D_Nadolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113941473-1874756 11B09_rep_D_Nadolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case54_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case54_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample089_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_E3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150250839-1924324 1_D10_RGT2_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150250839-1924324 1_D10_RGT2_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222801780-1869836 01E06_rep_A_Naproxenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222801780-1869836 01E06_rep_A_Naproxenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122216784-1879826 15D05_rep_C_Ambrisentana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122216784-1879826 15D05_rep_C_Ambrisentana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Mag_xyl_Glu_LbUGT3_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Microbacterium_BM4M003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202108656-1882222 16A04_rep_D_Trimebutineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202108656-1882222 16A04_rep_D_Trimebutineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124606752-1876656 09E09_rep_A_Estropipatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124606752-1876656 09E09_rep_A_Estropipatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223627613-1870219 01C01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223627613-1870219 01C01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD2_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GA2_01_17010.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/369.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125100012-1876846 12F08_rep_C_Dehydroisoandosterone_3-acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125100012-1876846 12F08_rep_C_Dehydroisoandosterone_3-acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201842575-1878107 09B09_rep_D_Suxibuzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201842575-1878107 09B09_rep_D_Suxibuzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ansB_#2_P4E10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (ansB_#2_P4E10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152913518-1577139 Batch3_T24_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153356287-1577365 Batch3_KU1919_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223521264-1870168 01D05_rep_B_Triamtereneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223521264-1870168 01D05_rep_B_Triamtereneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151234149-1576319 Batch5_NCIH446_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100431886-1868981 06C02_rep_D_Suloctidila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100431886-1868981 06C02_rep_D_Suloctidila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D3_id_MSn_negative.mzML at line 21
index 339 is out of bounds for axis 0 with size 339
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_sample05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152250480-1868066 05D03_rep_D_Dobutamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152250480-1868066 05D03_rep_D_Dobutamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170127_052ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/d3/c4ddfd0029b8ea23dc18ba33bb84b3/input_file/SH9_20170127_052ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-178_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150558446-1864872 02C05_rep_C_Famotidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150558446-1864872 02C05_rep_C_Famotidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc3 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_44.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_44.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113536144-1874559 11E09_rep_C_Iodixanolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113536144-1874559 11E09_rep_C_Iodixanolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152657604-1868255 06C03_rep_A_Zotepineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152657604-1868255 06C03_rep_A_Zotepineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_53_CNR_54.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_53_CNR_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092553297-1878897 14F05_rep_B_Sulfadoxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092553297-1878897 14F05_rep_B_Sulfadoxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.gha_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yccX_P4B4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (yccX_P4B4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/26_D25062013T0004_1399CBU_0019_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125236589-1876918 12C07_rep_D_Fluspirilenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125236589-1876918 12C07_rep_D_Fluspirilenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114223117-1922863 4_B11_STE2_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114223117-1922863 4_B11_STE2_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_149.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case139_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case139_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150540319-1864858 02G08_rep_C_Nicergolinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150540319-1864858 02G08_rep_C_Nicergolinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7G09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_A10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121531865-1866989 04H06_rep_B_Minocycline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121531865-1866989 04H06_rep_B_Minocycline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pabA_P3G1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (pabA_P3G1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092730340-1878972 14B06_rep_B_Piperidolate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092730340-1878972 14B06_rep_B_Piperidolate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_K3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_E6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_60_AC+_52.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E8_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlC2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlC2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_80.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD5_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092238663-1878745 14B07_rep_A_Trifluridineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092238663-1878745 14B07_rep_A_Trifluridineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152850227-1868342 06D05_rep_A_Cefadroxila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152850227-1868342 06D05_rep_A_Cefadroxila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095538/raw/2mecdp_13C_CE40_msAG252_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024762 (2mecdp_13C_CE40_msAG252_Aquity_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNQ766_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GG1_01_16860.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/545-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1H001A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200717930-1881598 16H05_rep_A_Ceftibutenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200717930-1881598 16H05_rep_A_Ceftibutenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151537521-1576471 Batch7_CORL88_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089617/ccms_peak/HR_Treatment_Replicate3_20210103065328.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124048861-1876403 08F07_rep_D_Demecarium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124048861-1876403 08F07_rep_D_Demecarium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180414_ES_H3K_batch7_repC_87.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151317275-1576355 Batch7_CHAGOK1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_02062001_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_68_Blank.mzXML at line 689
attributes construct error, line 38, column 73 (20100921_68_Blank.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N9.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_C11_id_negative.mzML at line 21
index 264 is out of bounds for axis 0 with size 264
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224122034-1870445 01F03_rep_D_Carbamazepinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224122034-1870445 01F03_rep_D_Carbamazepinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F3_id.mzML at line 21
index 505 is out of bounds for axis 0 with size 505
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090213/ccms_peak/18March2022_005_VH BK Trang 10x_pos  3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mrcA_#1_P4D1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (mrcA_#1_P4D1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151330828-1924872 3_C3_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151330828-1924872 3_C3_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101352109-1869429 07E07_rep_C_Ethionamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101352109-1869429 07E07_rep_C_Ethionamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample173.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_65.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202351072-1878349 10C07_rep_A_Glycopyrrolateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202351072-1878349 10C07_rep_A_Glycopyrrolateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123246222-1867811 05H02_rep_B_Terbutaline_hemisulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123246222-1867811 05H02_rep_B_Terbutaline_hemisulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F3_id_MSn_negative.mzML at line 21
index 284 is out of bounds for axis 0 with size 284
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1336.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1336.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101104522-1869295 07A10_rep_B_Ceftazidime_pentahydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101104522-1869295 07A10_rep_B_Ceftazidime_pentahydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYB013.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114732909-1875130 12A02_rep_B_Niacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114732909-1875130 12A02_rep_B_Niacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/245.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1016.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_81.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078932/ccms_peak/141031_CAICE_C18_707_20uL.mzXML at line 689
Premature end of data in tag peaks line 8185, line 8185, column 92764 (141031_CAICE_C18_707_20uL.mzXML, line 8185)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ytfT_#2_P4D11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (ytfT_#2_P4D11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123021737-1875901 08F09_rep_A_Acipimoxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123021737-1875901 08F09_rep_A_Acipimoxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_59.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_rerun_BC1_01_11594.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113254403-1874467 11D06_rep_B_Zolmitriptanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113254403-1874467 11D06_rep_B_Zolmitriptanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD5_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170207_016EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/b1/e0771e3e315f5e2cd71f11af3a7760/input_file/SH9_20170207_016EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180418_ES_H3K_batch6_repB_88.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091650011-1878471 13C09_rep_D_Norgestimateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091650011-1878471 13C09_rep_D_Norgestimateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR224h2b.mzML at line 689
AttValue: " or ' expected, line 84534, column 26 (pBpumR224h2b.mzML, line 84534)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123254726-1867818 05A01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123254726-1867818 05A01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125410062-1862944 03G05_rep_D_Oxymetazoline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125410062-1862944 03G05_rep_D_Oxymetazoline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_95.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person22_blood_elder_POS.mzXML at line 689
attributes construct error, line 41, column 83 (Person22_blood_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152810094-1577085 Batch3_RERFLCA1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_83.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR324h1a.mzML at line 689
attributes construct error, line 42650, column 110 (pMIBSDR324h1a.mzML, line 42650)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/459-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/blank_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223652575-1870238 01D09_rep_C_Hexamethonium dibromide dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223652575-1870238 01D09_rep_C_Hexamethonium dibromide dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/apigenin.mzXML at line 689
Premature end of data in tag peaks line 5327, line 5331, column 11756 (apigenin.mzXML, line 5331)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_5_P_rep_1_B-E3_1_5861.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/456-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GD3_01_11963.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rbsD_P4H12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (rbsD_P4H12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2A03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123939277-1876348 08B04_rep_D_Troglitazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123939277-1876348 08B04_rep_D_Troglitazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ispD_P3A3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ispD_P3A3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O17_id.mzML at line 21
index 560 is out of bounds for axis 0 with size 560
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180901_ES_H3K_batch1_repA_5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122917776-1880152 15H08_rep_D_Rivastigminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122917776-1880152 15H08_rep_D_Rivastigminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100551248-1869044 07G07_rep_A_Pregnenoloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100551248-1869044 07G07_rep_A_Pregnenoloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151417207-1576405 Batch7_SUM149PT_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091802157-1878528 13C05_rep_D_Oxfendazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091802157-1878528 13C05_rep_D_Oxfendazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-7-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007505_031618-0.01Thr1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086335/raw/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Arroz - MSConvert/22Apos.mzML at line 689
Extra content at the end of the document, line 51449, column 1 (22Apos.mzML, line 51449)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narV_P3G8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (narV_P3G8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111604137-1921528 1_C9_GAP1_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111604137-1921528 1_C9_GAP1_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083175.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100157085-1868859 06A06_rep_D_Pepstatin_Aa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100157085-1868859 06A06_rep_D_Pepstatin_Aa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/caiT_P3E12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (caiT_P3E12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rdgB_#1_P4G7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (rdgB_#1_P4G7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d8_277_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 37011, column 1 (SysVirol_IFT001_1918_d8_277_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 37011)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101438576-1869466 07G05_rep_C_Tobramycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101438576-1869466 07G05_rep_C_Tobramycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152426029-1576899 Batch2_NCIH596_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201734619-1882055 16H08_rep_C_Triclabendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201734619-1882055 16H08_rep_C_Triclabendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F13_id_MSn_negative.mzML at line 21
index 303 is out of bounds for axis 0 with size 303
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHA09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1I002B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201841245-1878106 09B09_rep_D_Suxibuzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201841245-1878106 09B09_rep_D_Suxibuzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GF4_01_17086.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152629753-1577001 Batch2_NCIH647_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/92.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C7_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_NC101_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hA2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hA2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlich1001R37_5h3a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 45257, column 673 (pBlich1001R37_5h3a.mzML, line 45257)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_10_CNR_47.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_10_CNR_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_Cal04RG_d8_287_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 31862, column 1 (SysVirol_IFL001_Cal04RG_d8_287_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 31862)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170207_034EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/89/5b957143d77442e13fd8f7ad3c4395/input_file/MMW3_20170207_034EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2B04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130135447-1877329 13H05_rep_B_Pancuronium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130135447-1877329 13H05_rep_B_Pancuronium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111453616-1921082 1_F7_GAP1_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111453616-1921082 1_F7_GAP1_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6H09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151037172-1924722 3_E8_SNF3_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151037172-1924722 3_E8_SNF3_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD6_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123516708-1876139 08H11_rep_B_Sertindoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123516708-1876139 08H11_rep_B_Sertindoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125654139-1863077 03C04_rep_D_Pargyline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125654139-1863077 03C04_rep_D_Pargyline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-qc_ehigh (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095328/peak/MS_RAW_data/230811_BBT301_control_TPP_HighPH_7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_ehigh.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_385.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydjG_P5B6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ydjG_P5B6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1C09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_07_743_prot_28_IMS_13Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A7_id_MSn_positive.mzML at line 21
index 528 is out of bounds for axis 0 with size 528
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/779.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153632034-1577493 Batch5_A704_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample085_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100522254-1869021 06D03_rep_D_Corticosteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100522254-1869021 06D03_rep_D_Corticosteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30164 - GI-17-615.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153443987-1868616 06E08_rep_C_Hydrocortisone_basea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153443987-1868616 06E08_rep_C_Hydrocortisone_basea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145531889-1863900 02F08_rep_A_Clindamycin hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145531889-1863900 02F08_rep_A_Clindamycin hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112809699-1874249 11A04_rep_A_Pyrithyldioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112809699-1874249 11A04_rep_A_Pyrithyldioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_C7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114134184-1922819 4_F5_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114134184-1922819 4_F5_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170207_067EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/0e/6586d05db241588b9f5adbcdec082e/input_file/MMW4_20170207_067EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092351521-1878802 14B11_rep_A_Oxaprozina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092351521-1878802 14B11_rep_A_Oxaprozina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123859622-1876316 08G03_rep_C_Amisulpridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123859622-1876316 08G03_rep_C_Amisulpridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123153506-1875975 08B05_rep_B_Dacarbazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123153506-1875975 08B05_rep_B_Dacarbazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD1_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH22.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150905521-1924643 2_G1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150905521-1924643 2_G1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_13_RIN_20.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_13_RIN_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112613748-1874157 11H07_rep_A_Bicalutamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112613748-1874157 11H07_rep_A_Bicalutamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N15_id_MSn_negative.mzML at line 21
index 309 is out of bounds for axis 0 with size 309
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GD11_01_12125.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125346741-1862925 03H02_rep_D_Etodolacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125346741-1862925 03H02_rep_D_Etodolacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control180_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control180_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153424375-1577388 Batch4_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153952080-1577661 Batch7_UO31_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_10_dorsal_skin_RESV_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_10_dorsal_skin_RESV_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_05_859_prot_38_IMS_18Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/PDI-flfl-liver-59.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR02pACR10/withKBr/140311pcapACYC.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_med (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152130528-1576760 Batch1_MDAMB436_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/32.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2E10P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180411_ES_H3K_batch7_repA_80.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_G11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control152_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control152_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000091079/ccms_peak/NEG_22.mzML at line 255
Error -3 while decompressing data: invalid stored block lengths
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125412216-1876991 12E02_rep_D_Nizatidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125412216-1876991 12E02_rep_D_Nizatidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_A2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B7_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210313_LKM_mb_rapid_beads_40min_5.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sbp_P4D10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (sbp_P4D10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/406.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uacT_#1_P4E12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (uacT_#1_P4E12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222900264-1869880 01D05_rep_A_Triamtereneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222900264-1869880 01D05_rep_A_Triamtereneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165749124-2227499 PAT39.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210330_AD_68.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124730538-1862623 03E08_rep_B_Tiboloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124730538-1862623 03E08_rep_B_Tiboloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/putP_#2_P5D10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (putP_#2_P5D10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125617847-1877087 12A11_rep_D_Esmolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125617847-1877087 12A11_rep_D_Esmolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201813312-1878085 09B04_rep_D_Mepenzolate_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201813312-1878085 09B04_rep_D_Mepenzolate_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/004_1018_2_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pntB_#3_P4G2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (pntB_#3_P4G2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5A008.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/iaaA_P3G2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (iaaA_P3G2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_D1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GG4_01_17223.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_K13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224253822-1870517 01F05_rep_D_Mefenamic acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224253822-1870517 01F05_rep_D_Mefenamic acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yejF_#3_P4B4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (yejF_#3_P4B4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_57.mzXML at line 689
Premature end of data in tag peaks line 19096, line 19100, column 15939 (20121114_57.mzXML, line 19100)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180628_ES_H3K_bacth8_repC_118.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125457792-1862983 03F11_rep_D_Indapamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125457792-1862983 03F11_rep_D_Indapamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30128 - GI-16-234.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hC2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hC2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_M9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case16_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case16_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_90.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G14P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E23_id_negative.mzML at line 21
index 259 is out of bounds for axis 0 with size 259
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/CPV_P_rep_2_B-E8_1_5552.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_Batch03_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S05_0124.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124649054-1862590 03H05_rep_B_Chlorphensin_carbamatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124649054-1862590 03H05_rep_B_Chlorphensin_carbamatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151729549-1576565 Batch7_SKMEL2_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L17_id_negative.mzML at line 21
index 260 is out of bounds for axis 0 with size 260
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151639833-1925028 4_C5_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151639833-1925028 4_C5_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124548542-1876642 09H06_rep_A_Sulfachloropyridazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124548542-1876642 09H06_rep_A_Sulfachloropyridazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122454538-1867437 04H09_rep_D_Quinacrine_dihydrochloride_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122454538-1867437 04H09_rep_D_Quinacrine_dihydrochloride_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ddlA_#2_P4A3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ddlA_#2_P4A3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine80cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine80cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GE3_01_12132.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_261.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085122/peak/21.mzXML at line 689
Specification mandates value for attribute HsvoLj3lFI2QI, line 29413, column 15 (21.mzXML, line 29413)
Error processing file: /data/datasets/server/MassIVE/MSV000079788/ccms_peak/Human_GITract_organic_renamed_mzxml_march2016/03242016_human.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152819596-1577093 Batch3_HT1376_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD3_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151025452-1924712 3_G3_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151025452-1924712 3_G3_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130031731-1877281 13H01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130031731-1877281 13H01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pflC_P5A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (pflC_P5A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_64.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_A9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114053745-1922783 4_C4_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114053745-1922783 4_C4_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153125138-1577243 Batch3_SU8686_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/143-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000088438/updates/2021-12-07_gbass_63710cd1/raw/timsconvert_test_2021DEC07/ms1/rs17f_1mgml_1_11_1_1207.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153046052-1577212 Batch3_647V_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraControlD1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraControlD1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152306153-1868078 05H06_rep_D_Amikacin_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152306153-1868078 05H06_rep_D_Amikacin_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152300895-1868074 05G08_rep_D_Carbetapentane_citratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152300895-1868074 05G08_rep_D_Carbetapentane_citratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111327594-1871439 10A04_rep_B_Phenethicillin_potassium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111327594-1871439 10A04_rep_B_Phenethicillin_potassium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_blood_1h_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Volunteer3_blood_1h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152341672-1576864 Batch1_HCC70_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152927936-1868372 06G10_rep_A_Niridazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152927936-1868372 06G10_rep_A_Niridazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GE7_01_12138.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125523701-1863004 03E05_rep_D_Flumequinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125523701-1863004 03E05_rep_D_Flumequinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111703595-1871604 10B05_rep_B_Flumethasoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111703595-1871604 10B05_rep_B_Flumethasoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_H8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124642375-1876684 09C08_rep_A_Acefyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124642375-1876684 09C08_rep_A_Acefyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_231.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3E07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD2_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096195/ccms_peak/191109_AR_10043_enriched_UHR_Pos.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yddG_P3F4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (yddG_P3F4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121927082-1879697 15E11_rep_B_Tulobuterolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121927082-1879697 15E11_rep_B_Tulobuterolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GF5_01_17210.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151459436-1924948 4_H10_SNF3_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151459436-1924948 4_H10_SNF3_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpMat3_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_G11_id_negative.mzML at line 21
index 245 is out of bounds for axis 0 with size 245
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/moaD_#1_P4H1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (moaD_#1_P4H1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpF_#3_P4B11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (atpF_#3_P4B11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125321092-1876952 12D09_rep_D_Nimodipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125321092-1876952 12D09_rep_D_Nimodipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153716190-1577530 Batch4_977_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152314178-1576842 Batch2_NCIH520_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153330269-1577344 Batch4_NCIH1793_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8H02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210328_AD_57.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153608525-1868683 06B05_rep_C_Amlodipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153608525-1868683 06B05_rep_C_Amlodipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_G1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_59_NOR_40.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_59_NOR_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG15.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_plasma_24h_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer3_plasma_24h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093238237-1879211 14F04_rep_C_Misoprostolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093238237-1879211 14F04_rep_C_Misoprostolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD4_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150418055345.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kbaY_P4G6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (kbaY_P4G6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_E11_id_negative.mzML at line 21
index 168 is out of bounds for axis 0 with size 168
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125055877-1876843 12A04_rep_C_Digoxigenina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125055877-1876843 12A04_rep_C_Digoxigenina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_qc_high.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114753175-1875146 12E07_rep_B_Idazoxan_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114753175-1875146 12E07_rep_B_Idazoxan_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample205.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112545795-1922031 4_B3_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112545795-1922031 4_B3_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125749677-1877158 13B11_rep_A_Piribedil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125749677-1877158 13B11_rep_A_Piribedil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_A3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_19090114_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150447798-1864817 02D04_rep_C_Ciprofloxacin hydrochloride monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150447798-1864817 02D04_rep_C_Ciprofloxacin hydrochloride monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_70_AC+_15.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112413169-1874061 10B01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112413169-1874061 10B01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_55.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6D12_160603053448.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153136268-1868468 06H09_rep_B_Felodipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153136268-1868468 06H09_rep_B_Felodipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112332215-1873643 10C11_rep_D_Mevalonic-D,_L_acid_lactonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112332215-1873643 10C11_rep_D_Mevalonic-D,_L_acid_lactonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_19040307_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114730009-1875128 12H10_rep_B_Proparacaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114730009-1875128 12H10_rep_B_Proparacaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_6_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009656_IBD200_E19_A7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170207_039EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/05/15e18c7b9ede7c5c76f42dc700897a/input_file/MMW4_20170207_039EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152833685-1577105 Batch3_ACHN_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GE8_01_16891.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-107_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7H09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201218_LKM_all_wash_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114110591-1922798 4_B2_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114110591-1922798 4_B2_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_207.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101117279-1869305 07C04_rep_B_Cetirizine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101117279-1869305 07C04_rep_B_Cetirizine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_64.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_64.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_116.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_116.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GA6_01_12064.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GF9_01_16854.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cynX_P6A9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (cynX_P6A9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130711360-1877592 13C11_rep_C_Phenylbutazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130711360-1877592 13C11_rep_C_Phenylbutazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080128/ccms_peak/20100226_Ctherm_SWG_PU2_T10_200hr_SCX_LTQ3_Run2/20100226_Ctherm_SWG_PU2_T10_200hr_SCX_LTQ3_Run2_05.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/3.1_ITA.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153723593-1577536 Batch4_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152541462-1576961 Batch1_CALU3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122930609-1867659 05F11_rep_B_Clebopride_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122930609-1867659 05F11_rep_B_Clebopride_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_H9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092744872-1878983 14F02_rep_B_Spaglumic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092744872-1878983 14F02_rep_B_Spaglumic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130652477-1877577 13F05_rep_C_Sertralinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130652477-1877577 13F05_rep_C_Sertralinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_18.mzXML at line 689
Premature end of data in tag peaks line 20286, line 20290, column 11843 (20121114_18.mzXML, line 20290)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/57-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_SERUM_V6_SSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Pseudomonas/Pseudomonas_ES60.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152324620-1868092 05F07_rep_D_Clofaziminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152324620-1868092 05F07_rep_D_Clofaziminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080030/ccms_peak/Forensic_study_80_volunteers/Forensic_Objects_mzXML/Forensic_Objects_plate_C_mzXML/.DS_Store at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113831024-1874699 11E11_rep_C_Equilinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113831024-1874699 11E11_rep_C_Equilinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ3_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaQ_#2_P4A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (waaQ_#2_P4A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_19040322_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mrcB_#2_P6F10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (mrcB_#2_P6F10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130158717-1877347 13A11_rep_B_Indatraline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130158717-1877347 13A11_rep_B_Indatraline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N7_id_MSn_positive.mzML at line 21
index 528 is out of bounds for axis 0 with size 528
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224149850-1870467 01H02_rep_D_Todralazine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224149850-1870467 01H02_rep_D_Todralazine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-069_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152349698-1868111 05G04_rep_D_Nicardipine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152349698-1868111 05G04_rep_D_Nicardipine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/1-methyltryptophan.mzXML at line 689
Premature end of data in tag peaks line 7327, line 7331, column 73194 (1-methyltryptophan.mzXML, line 7331)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112114907-1873053 10H01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112114907-1873053 10H01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_dilute_190201061358.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIAI07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153008635-1868403 06C06_rep_A_Chicago_sky_blue_6Bb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153008635-1868403 06C06_rep_A_Chicago_sky_blue_6Bb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153129636-1868463 06E02_rep_B_Estradiol-17_betab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153129636-1868463 06E02_rep_B_Estradiol-17_betab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A6_id_MSn_negative.mzML at line 21
index 243 is out of bounds for axis 0 with size 243
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ6_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_15_NOR_30.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_15_NOR_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152357886-1576877 Batch2_NCIH2444_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125339087-1876966 12B06_rep_D_Aminohippuric_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125339087-1876966 12B06_rep_D_Aminohippuric_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_global_HFD31_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_136a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B12_id_MSn_positive.mzML at line 21
index 498 is out of bounds for axis 0 with size 498
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfG_#1_P3A12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (hyfG_#1_P3A12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/399.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_130.mzXML at line 689
Premature end of data in tag peaks line 23244, line 23248, column 3654 (20121114_130.mzXML, line 23248)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151126880-1865127 02D01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151126880-1865127 02D01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaC_P4B2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (paaC_P4B2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007558_031618-1CRP6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_rerun_H1_01_11782.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1H09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111722927-1921596 1_A9_GAP1_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111722927-1921596 1_A9_GAP1_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_137.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_global_HFD27_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125930441-1863208 04A08_rep_A_Albendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125930441-1863208 04A08_rep_A_Albendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201114609-1881772 16A02_rep_B_Nelfinavir_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201114609-1881772 16A02_rep_B_Nelfinavir_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_124.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224125746-1870448 01E04_rep_D_Betazole hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224125746-1870448 01E04_rep_D_Betazole hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152020205-1867948 05C05_rep_C_Clorgyline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152020205-1867948 05C05_rep_C_Clorgyline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101213677-1869350 07D05_rep_B_Pyrazinamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101213677-1869350 07D05_rep_B_Pyrazinamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/galE_P4A5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (galE_P4A5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152104064-1576739 Batch1_HCC38_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample16n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control44_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control44_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130332562-1877420 13H02_rep_B_Halofantrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130332562-1877420 13H02_rep_B_Halofantrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153002687-1868399 06C09_rep_A_Roxatidine_Acetate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153002687-1868399 06C09_rep_A_Roxatidine_Acetate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113743681-1874661 11F04_rep_C_Liothyronineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113743681-1874661 11F04_rep_C_Liothyronineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094957/peak/POLAR_POSITIVE/E03_Polar_Daph_WAX3_Phenyl_LCMS_Pos_DIMSn.mzML at line 689
AttValue: " or ' expected, line 5091, column 162 (E03_Polar_Daph_WAX3_Phenyl_LCMS_Pos_DIMSn.mzML, line 5091)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114246702-1922884 4_A4_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114246702-1922884 4_A4_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/200-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223913183-1870347 01A11_rep_C_Sulfaguanidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223913183-1870347 01A11_rep_C_Sulfaguanidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/246.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_02_liver_control_oral_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_02_liver_control_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124019524-1876380 08H01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124019524-1876380 08H01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case17_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case17_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_F1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_F9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_sample11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_A10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control235_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control235_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223155923-1870012 01B11_rep_B_Minoxidilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223155923-1870012 01B11_rep_B_Minoxidilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2H02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_53.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Scopulariopsis_flava_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Microminospora_schwarzwaldensis_BM2Q03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample123_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mrdA_P3H4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (mrdA_P3H4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_H4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102058750-1869773 07D01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102058750-1869773 07D01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc035_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc035_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1127.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_085a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151011547-1865068 02E04_rep_D_Dehydrocholic acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151011547-1865068 02E04_rep_D_Dehydrocholic acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151502740-1576443 Batch7_NCIH1734_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/461-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201221497-1881822 16G08_rep_B_Risedronic_acid_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201221497-1881822 16G08_rep_B_Risedronic_acid_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101635559-1869558 07F05_rep_C_Atovaquoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101635559-1869558 07F05_rep_C_Atovaquoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097448/updates/2025-05-29_amsidebottom_3d270e8d/raw/GC1410_379_1207/025__20221027__GC379S__3806-Sre__dil.mzML at line 689
Premature end of data in tag indexedmzML line 2, line 63436, column 1 (025__20221027__GC379S__3806-Sre__dil.mzML, line 63436)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-133_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control24_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control24_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150749561-1864958 02C03_rep_D_Amoxapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150749561-1864958 02C03_rep_D_Amoxapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4D04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153337716-1577350 Batch5_HDQP1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114145467-1874856 11A05_rep_D_Spectinomycin_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114145467-1874856 11A05_rep_D_Spectinomycin_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30177 - GI-19-081.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201216133-1881818 16C05_rep_B_Nitazoxanideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201216133-1881818 16C05_rep_B_Nitazoxanideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122211190-1867305 04A06_rep_D_Dropropizine_(R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122211190-1867305 04A06_rep_D_Dropropizine_(R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_19032112_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/427.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_E10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092039775-1878652 14H11_rep_A_Nadifloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092039775-1878652 14H11_rep_A_Nadifloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/920.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113225848-1922340 1_G8_IZH2_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113225848-1922340 1_G8_IZH2_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124409819-1876566 09H08_rep_A_Finasteridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124409819-1876566 09H08_rep_A_Finasteridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180827_ES_H3K_batch11_repA_157.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/3.2_ITA.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123152230-1875974 08B05_rep_B_Dacarbazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123152230-1875974 08B05_rep_B_Dacarbazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152040135-1867964 05C03_rep_C_Methapyrilene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152040135-1867964 05C03_rep_C_Methapyrilene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/TAA486_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_50.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_50.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/icit_icd_P5G12_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (icit_icd_P5G12_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152154587-1868024 05E09_rep_C_Bepridil_hydrochloride_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152154587-1868024 05E09_rep_C_Bepridil_hydrochloride_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G5_id_MSn_positive.mzML at line 21
index 650 is out of bounds for axis 0 with size 650
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G18_id.mzML at line 21
index 324 is out of bounds for axis 0 with size 324
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151823387-1576609 Batch7_UACC257_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122057352-1879766 15H08_rep_B_Rivastigminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122057352-1879766 15H08_rep_B_Rivastigminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_A7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152422172-1576896 Batch2_T47D_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088829/raw/AFN13.mzXML at line 255
Error -3 while decompressing data: invalid stored block lengths
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_elow (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130242438-1877381 13F02_rep_B_Flucloxacillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130242438-1877381 13F02_rep_B_Flucloxacillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlA1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlA1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/836.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/439.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152848901-1577118 Batch3_EPLC272H_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102116929-1869788 07D10_rep_D_Imipenemb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102116929-1869788 07D10_rep_D_Imipenemb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124403886-1876561 09A06_rep_A_Flurandrenolideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124403886-1876561 09A06_rep_A_Flurandrenolideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/257.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ccmB_P3F8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (ccmB_P3F8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/QC_4_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124424641-1876578 09D02_rep_A_Dydrogesteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124424641-1876578 09D02_rep_A_Dydrogesteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123259542-1867822 05E07_rep_B_Ambroxol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123259542-1867822 05E07_rep_B_Ambroxol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130336431-1877423 13B01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130336431-1877423 13B01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223249460-1870052 01B05_rep_B_Sulfacetamide sodic hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223249460-1870052 01B05_rep_B_Sulfacetamide sodic hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/ObesumbacteriumHafnia_EB1K016.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/BeautyProducts_Vol3/BP3_01_12410.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_94.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1H002C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_38_RIN_48.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_38_RIN_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroE_P4H2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (aroE_P4H2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113611525-1922536 2_B10_IZH2_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113611525-1922536 2_B10_IZH2_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152315407-1868085 05B05_rep_D_Sulfisoxazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152315407-1868085 05B05_rep_D_Sulfisoxazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150232977-1864714 02A06_rep_B_Baclofen (R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150232977-1864714 02A06_rep_B_Baclofen (R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Serratia_fonticola_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNS615_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151849277-1867875 05G05_rep_C_Probucolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151849277-1867875 05G05_rep_C_Probucolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_60.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_19071524_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_H3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B13P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152600877-1868211 05H11_rep_D_Hesperidin_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152600877-1868211 05H11_rep_D_Hesperidin_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111615527-1921538 1_G10_GAP1_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111615527-1921538 1_G10_GAP1_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/005_Soil_10mMIntra_3_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101726622-1869600 07E05_rep_C_Tiabendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101726622-1869600 07E05_rep_C_Tiabendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009564_IBD200_E13_B8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person22_plasma_elder_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person22_plasma_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201317122-1881864 16G03_rep_B_Loteprednol_etabonateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201317122-1881864 16G03_rep_B_Loteprednol_etabonateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152804968-1868307 06E10_rep_A_Pilocarpine_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152804968-1868307 06E10_rep_A_Pilocarpine_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person02_plasma_youth_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person02_plasma_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/363.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/899-A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152458167-1576925 Batch2_BXPC3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_18111330_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/474-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_55.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/treF_P4A4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (treF_P4A4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115000374-1875249 12A01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115000374-1875249 12A01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_094a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/240.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152551193-1576969 Batch2_RERFLCSQ1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113610424-1922535 2_C7_IZH2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113610424-1922535 2_C7_IZH2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/351.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211005_LKM_beads_mb_HPB_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/838.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/145_117.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093029152-1879110 14B05_rep_C_Levopropoxyphene_napsylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093029152-1879110 14B05_rep_C_Levopropoxyphene_napsylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/Blank8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152004395-1576692 Batch1A_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082793/ccms_peak/raw/MTBLS227/37382-A09-1.mzXML at line 689
Premature end of data in tag peaks line 2343, line 2347, column 65197 (37382-A09-1.mzXML, line 2347)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_Timedependent/mzML/B_15102011_D8_Neg_cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121710901-1867067 04D08_rep_B_Labetalol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121710901-1867067 04D08_rep_B_Labetalol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180822_ES_H3K_batch10_repB_139.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample037_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_63.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_17111316_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Phenylobacterium_sp_WTHL16.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152650856-1868250 06D07_rep_A_Digitoxigenina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152650856-1868250 06D07_rep_A_Digitoxigenina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/834.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_CABIN_sample01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201100394-1877767 09B01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201100394-1877767 09B01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GG1_01_17220.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD2_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K5_id_MSn_negative.mzML at line 21
index 328 is out of bounds for axis 0 with size 328
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample059_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wecD_#1_P5G2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (wecD_#1_P5G2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007576_031718-5CRP4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121533188-1866990 04E07_rep_B_Perhexiline_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121533188-1866990 04E07_rep_B_Perhexiline_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1094.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_C12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152105366-1576740 Batch1_HCC38_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223819635-1870305 01B06_rep_C_Heptaminol hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223819635-1870305 01B06_rep_C_Heptaminol hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202356117-1878353 10B06_rep_A_Flecainide_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202356117-1878353 10B06_rep_A_Flecainide_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_G6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6G08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114600900-1875059 12H05_rep_A_Tyloxapolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114600900-1875059 12H05_rep_A_Tyloxapolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223211845-1870024 01F04_rep_B_Triflupromazine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223211845-1870024 01F04_rep_B_Triflupromazine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113436548-1922454 2_D11_IZH2_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113436548-1922454 2_D11_IZH2_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152413284-1576889 Batch2_VMCUB1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_85.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yihQ_#1_P5A12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (yihQ_#1_P5A12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007676_032118-1CRP3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_08P_A8_id_positive.mzML at line 21
index 360 is out of bounds for axis 0 with size 360
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121813083-1867116 04A10_rep_C_Bupropion_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121813083-1867116 04A10_rep_C_Bupropion_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112758215-1874240 11C02_rep_A_Azlocillin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112758215-1874240 11C02_rep_A_Azlocillin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124420914-1876575 09C11_rep_A_Irsogladine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124420914-1876575 09C11_rep_A_Irsogladine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6A01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yfgF_#1_P4G5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (yfgF_#1_P4G5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNT302_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151000763-1924691 3_C1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151000763-1924691 3_C1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113905518-1874727 11D09_rep_D_Iocetamic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113905518-1874727 11D09_rep_D_Iocetamic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Verrucosispora_sp_SY10_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GB9_01_12089.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_0123_190123211818.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091652635-1878473 13A10_rep_D_Darifenacin_hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091652635-1878473 13A10_rep_D_Darifenacin_hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009557_IBD200_E13_A1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lysA_#2_P4H10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (lysA_#2_P4H10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person13_plasma_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person13_plasma_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121731985-1879610 15A04_rep_B_Doxycycline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121731985-1879610 15A04_rep_B_Doxycycline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlB3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlB3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample050_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009683_IBD200_E21_B10.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD6_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153335131-1577348 Batch4_NCIH1666_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122748707-1867578 05E10_rep_A_Meloxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122748707-1867578 05E10_rep_A_Meloxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C2_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125744289-1877154 13G04_rep_A_Isometheptene_mucateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125744289-1877154 13G04_rep_A_Isometheptene_mucateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112512554-1922002 3_E7_GPR1_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112512554-1922002 3_E7_GPR1_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gcvT_P3H2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (gcvT_P3H2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_qh2o_pos_IMS1_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mhpD_P3C12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (mhpD_P3C12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152041187-1576721 Batch1_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125943448-1877246 13F08_rep_A_Etilefrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125943448-1877246 13F08_rep_A_Etilefrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152524375-1868183 05H09_rep_D_Oxantel_pamoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152524375-1868183 05H09_rep_D_Oxantel_pamoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD4_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145738668-1864002 02D08_rep_A_Chlorpheniramine maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145738668-1864002 02D08_rep_A_Chlorpheniramine maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_aqueous_longstudy_230215_167.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample15n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_74.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_2_B_rep_2_B-D8_1_5542.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150000024-1864116 02A05_rep_B_Moroxidine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150000024-1864116 02A05_rep_B_Moroxidine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/305.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165847033-2227552 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/20221212_carryover_test_noISTD_PLASMA_sample02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_C3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007623_032118-Unst6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123515582-1876138 08H11_rep_B_Sertindolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123515582-1876138 08H11_rep_B_Sertindolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151657127-1576538 Batch7_NCIH226_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121759271-1867105 04E03_rep_C_Fenoterol_hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121759271-1867105 04E03_rep_C_Fenoterol_hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153705481-1868730 06E01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153705481-1868730 06E01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glmS_#1_P6F11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (glmS_#1_P6F11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088819/updates/2022-07-20_jdeutsch79_e3394df0/raw/Winter_MC005_246_P1-B-5_01_17903.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5C02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2E06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153118959-1577238 Batch3_NCIH460DNP53_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/livG_P4B12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (livG_P4B12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1206.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1206.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152523034-1868182 05H09_rep_D_Oxantel_pamoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152523034-1868182 05H09_rep_D_Oxantel_pamoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_F6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rbsK_#1_P3F11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (rbsK_#1_P3F11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1418.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1418.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control232_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control232_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151225617-1576312 Batch5_NCIH2135_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B10_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O18_id_negative.mzML at line 21
index 261 is out of bounds for axis 0 with size 261
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_146.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102027318-1869747 07E06_rep_D_Rifampicina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102027318-1869747 07E06_rep_D_Rifampicina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150032325-1864140 02F01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150032325-1864140 02F01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150353312-1924376 1_H2_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150353312-1924376 1_H2_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100835194-1869176 07H05_rep_A_Tolazamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100835194-1869176 07H05_rep_A_Tolazamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudI_P3D7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (nudI_P3D7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_23_AC+_51.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/emtA_P3B5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (emtA_P3B5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/16FEB2021 Column3_test_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_rerun_GA2_01_11585.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-6-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086335/raw/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Brancos/MeOH_13213.mzML at line 689
Extra content at the end of the document, line 4124, column 1 (MeOH_13213.mzML, line 4124)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151648715-1576531 Batch7_NCIH441_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_G9_id_positive.mzML at line 21
index 311 is out of bounds for axis 0 with size 311
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR324h2a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 222573, column 273 (pMIBSDR324h2a.mzML, line 222573)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125202853-1862841 03C11_rep_C_Tolbutamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125202853-1862841 03C11_rep_C_Tolbutamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD138_P2-B-4_01_2701.mzML at line 88
Invalid base64-encoded string: number of data characters (4823917) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_D6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153153645-1577266 Batch5_NCIH23_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ubiH_#1_P4H9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (ubiH_#1_P4H9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153937735-1577649 Batch6_SF539_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1452.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1452.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6F01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150944266-1865047 02E02_rep_D_Bromocryptine mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150944266-1865047 02E02_rep_D_Bromocryptine mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_085b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_blank_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hybO_P3F2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (hybO_P3F2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated8hB1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated8hB1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/zwf_P4G1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (zwf_P4G1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_Extracellular/mzML/Ex_Baicalein_2_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121240782-1879391 14B07_rep_D_Trifluridineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121240782-1879391 14B07_rep_D_Trifluridineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6E03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130333868-1877421 13C08_rep_B_Pramipexole_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130333868-1877421 13C08_rep_B_Pramipexole_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_06_liver_RESV_oral_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_06_liver_RESV_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111737775-1871631 10A08_rep_C_Liranaftatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111737775-1871631 10A08_rep_C_Liranaftatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112040742-1921765 2_D2_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112040742-1921765 2_D2_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125607464-1877079 12C06_rep_D_Urapidil_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125607464-1877079 12C06_rep_D_Urapidil_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123118750-1867741 05F10_rep_B_Nefazodone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123118750-1867741 05F10_rep_B_Nefazodone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arnD_#2_P6E4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (arnD_#2_P6E4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F9_id_MSn_negative.mzML at line 21
index 290 is out of bounds for axis 0 with size 290
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152452055-1868158 05D10_rep_D_Dextromethorphan_hydrobromide_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152452055-1868158 05D10_rep_D_Dextromethorphan_hydrobromide_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/700.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100736849-1869130 07F08_rep_A_Piracetamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100736849-1869130 07F08_rep_A_Piracetamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHF06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113521616-1922493 2_F7_IZH2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113521616-1922493 2_F7_IZH2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121702277-1867060 04G01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121702277-1867060 04G01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145711477-1863980 02F10_rep_A_Cefotaxime sodium saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145711477-1863980 02F10_rep_A_Cefotaxime sodium saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_B15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3F02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/316.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std d 00.3a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122853898-1880133 15E06_rep_D_Fluocinolone_acetonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122853898-1880133 15E06_rep_D_Fluocinolone_acetonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124523539-1876624 09D09_rep_A_Tazobactama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124523539-1876624 09D09_rep_A_Tazobactama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_G5_01_12176.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151524385-1576460 Batch7_CORL88_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124541824-1862420 03F05_rep_B_Gemfibrozilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124541824-1862420 03F05_rep_B_Gemfibrozilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_39_CNR_48.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_39_CNR_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112555186-1874142 11C08_rep_A_Propantheline_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112555186-1874142 11C08_rep_A_Propantheline_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_D6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_B4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_A5M_pos_IMS1_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00073367.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100546066-1869040 07A03_rep_A_Cefotiam_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100546066-1869040 07A03_rep_A_Cefotiam_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc2_T4_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130007554-1863239 04A06_rep_A_Dropropizine_(R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130007554-1863239 04A06_rep_A_Dropropizine_(R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101218739-1869354 07H11_rep_B_Prenylamine_lactateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101218739-1869354 07H11_rep_B_Prenylamine_lactateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1126.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092840216-1879026 14C01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092840216-1879026 14C01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Pool_7_B-A2_1_5517.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8A07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112659746-1922096 4_B8_GPR1_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112659746-1922096 4_B8_GPR1_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_09_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_09_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dkgB_P3H12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (dkgB_P3H12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample108.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223729201-1870266 01C04_rep_C_Sulfadiazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223729201-1870266 01C04_rep_C_Sulfadiazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122713226-1880054 15D05_rep_D_Ambrisentana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122713226-1880054 15D05_rep_D_Ambrisentana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125557147-1863031 03E04_rep_D_Flufenamic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125557147-1863031 03E04_rep_D_Flufenamic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/speG_#4_P4B4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (speG_#4_P4B4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_dilute.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_93.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152940697-1577162 Batch3_NCIH322M_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_184.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130047715-1863271 04H05_rep_A_Enalapril_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130047715-1863271 04H05_rep_A_Enalapril_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_101.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_rerun_A3_BA3_01_12031.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_G6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ4_8 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200939814-1877708 09G08_rep_B_Diphenylpyraline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200939814-1877708 09G08_rep_B_Diphenylpyraline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101102094-1869293 07F07_rep_B_(S)-(-)-Atenolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101102094-1869293 07F07_rep_B_(S)-(-)-Atenolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092352884-1878803 14B11_rep_A_Oxaprozinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092352884-1878803 14B11_rep_A_Oxaprozinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ytfE_#1_P4C4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (ytfE_#1_P4C4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/858.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201859686-1878120 09D04_rep_D_Opipramol_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201859686-1878120 09D04_rep_D_Opipramol_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysH_P5G11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (cysH_P5G11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_136.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fadD_P3H8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (fadD_P3H8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201159897-1877810 09B11_rep_B_Avermectin_B1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201159897-1877810 09B11_rep_B_Avermectin_B1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_A7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F10_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145638190-1863953 02H06_rep_A_Paclitaxela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145638190-1863953 02H06_rep_A_Paclitaxela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_A5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122138762-1879797 15C02_rep_C_Famciclovirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122138762-1879797 15C02_rep_C_Famciclovirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD6_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_AW3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_G9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112348479-1874041 10G07_rep_D_Methimazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112348479-1874041 10G07_rep_D_Methimazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200918235-1881686 16H04_rep_A_Raltitrexedb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200918235-1881686 16H04_rep_A_Raltitrexedb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125709864-1863090 03H09_rep_D_Lomefloxacin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125709864-1863090 03H09_rep_D_Lomefloxacin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narK_P4F4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (narK_P4F4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D1_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8F09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ulaG_P3D1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ulaG_P3D1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112223583-1873588 10A09_rep_D_Sulfadimethoxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112223583-1873588 10A09_rep_D_Sulfadimethoxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086152/peak/Peak_List_Files/WSU_Sleep_SC_QC_L_136_Neg_27Aug18_Brandi-WCSH7803.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (WSU_Sleep_SC_QC_L_136_Neg_27Aug18_Brandi-WCSH7803.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2B12_160526181048.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123725451-1876241 08B06_rep_C_Tenatoprazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123725451-1876241 08B06_rep_C_Tenatoprazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ynfE_#1_P3H3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (ynfE_#1_P3H3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GD10_01_17063.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111858594-1872561 10D03_rep_C_Phenazopyridine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111858594-1872561 10D03_rep_C_Phenazopyridine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pepA_P6B1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (pepA_P6B1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121111480-1879324 14H08_rep_D_Azaperonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121111480-1879324 14H08_rep_D_Azaperonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_C4_id_positive.mzML at line 21
index 351 is out of bounds for axis 0 with size 351
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/katE_P4A4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (katE_P4A4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113927948-1874745 11F02_rep_D_Paroxetine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113927948-1874745 11F02_rep_D_Paroxetine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J21_id_negative.mzML at line 21
index 273 is out of bounds for axis 0 with size 273
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224401415-1870571 01F11_rep_D_Tolazoline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224401415-1870571 01F11_rep_D_Tolazoline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151622424-1925013 4_B7_SNF3_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151622424-1925013 4_B7_SNF3_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113036068-1874359 11H07_rep_B_Bicalutamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113036068-1874359 11H07_rep_B_Bicalutamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_72.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ3_3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083880/ccms_peak/Subject2_13_824_9pm.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000083880/ccms_peak/Subject2_13_824_9pm.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000092744/ccms_peak/7b_ED5a_dHem25_HEM25FLAG_3.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000092744/ccms_peak/7b_ED5a_dHem25_HEM25FLAG_3.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180417_ES_H3K_batch6_repA_99.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M10_id_MSn_positive.mzML at line 21
index 374 is out of bounds for axis 0 with size 374
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123252228-1867816 05F08_rep_B_Nafronyl_oxalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123252228-1867816 05F08_rep_B_Nafronyl_oxalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-042_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/waaR_P4C8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (waaR_P4C8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P16_id_MSn_negative.mzML at line 21
index 310 is out of bounds for axis 0 with size 310
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gmr_P5B2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (gmr_P5B2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_138a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145646960-1863960 02C02_rep_A_R(-) Apomorphine hydrochloride hemihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145646960-1863960 02C02_rep_A_R(-) Apomorphine hydrochloride hemihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_A10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113929119-1874746 11H04_rep_D_Theophylline_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113929119-1874746 11H04_rep_D_Theophylline_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201915108-1878132 09A10_rep_D_Etanidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201915108-1878132 09A10_rep_D_Etanidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125506539-1862990 03H01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125506539-1862990 03H01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150653526-1864914 02C06_rep_C_Danazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150653526-1864914 02C06_rep_C_Danazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111417772-1921052 1_H4_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111417772-1921052 1_H4_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD2_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165923434-2227586 PAT45.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/480-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydeA_P4G4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (ydeA_P4G4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125408820-1862943 03H06_rep_D_Carmofurb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125408820-1862943 03H06_rep_D_Carmofurb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112449623-1921982 3_G3_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112449623-1921982 3_G3_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7B08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210115_AD_77.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J18_id_MSn_negative.mzML at line 21
index 358 is out of bounds for axis 0 with size 358
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223656484-1870241 01A04_rep_C_Acetazolamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223656484-1870241 01A04_rep_C_Acetazolamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/935-A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control176_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control176_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E5_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_G6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111721776-1921595 1_G3_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111721776-1921595 1_G3_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152822005-1577095 Batch3_PANC0327_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gabT_P3A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (gabT_P3A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092934964-1879070 14E11_rep_C_Homosalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092934964-1879070 14E11_rep_C_Homosalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J6_id_negative.mzML at line 21
index 266 is out of bounds for axis 0 with size 266
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6B06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_L17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/19072021_Batch07_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sapD_P3G6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (sapD_P3G6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111758928-1921627 1_D2_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111758928-1921627 1_D2_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/C24_II_ESI-.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD5_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150730601-1864943 02E09_rep_C_Spironolactoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150730601-1864943 02E09_rep_C_Spironolactoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100251867-1868902 06H02_rep_D_Vatalanibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100251867-1868902 06H02_rep_D_Vatalanibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2E08P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153205066-1577275 Batch4_NCIH1869_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB1H07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case89_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case89_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/QC.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111830809-1872058 10C11_rep_C_Mevalonic-D,_L_acid_lactonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111830809-1872058 10C11_rep_C_Mevalonic-D,_L_acid_lactonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152315443-1576843 Batch2_NCIH520_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O22_id_MSn_positive.mzML at line 21
index 559 is out of bounds for axis 0 with size 559
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N15_id_MSn_positive.mzML at line 21
index 708 is out of bounds for axis 0 with size 708
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202021940-1882186 16A03_rep_D_Silodosinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202021940-1882186 16A03_rep_D_Silodosinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person16_RBC_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Person16_RBC_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114911050-1875209 12A10_rep_B_Diacereinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114911050-1875209 12A10_rep_B_Diacereinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case184_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case184_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202425601-1878376 10D04_rep_A_Demeclocycline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202425601-1878376 10D04_rep_A_Demeclocycline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151442995-1924934 4_D10_SNF3_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151442995-1924934 4_D10_SNF3_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151032089-1865084 02H05_rep_D_Josamycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151032089-1865084 02H05_rep_D_Josamycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114649943-1875097 12D07_rep_B_Nitrendipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114649943-1875097 12D07_rep_B_Nitrendipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/entH_#1_P4D2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (entH_#1_P4D2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_19071524_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/95.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114138601-1922823 4_C9_STE2_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114138601-1922823 4_C9_STE2_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B8_id_negative.mzML at line 21
index 279 is out of bounds for axis 0 with size 279
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150834703-1864993 02H11_rep_D_Gentamicine sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150834703-1864993 02H11_rep_D_Gentamicine sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-094_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202357364-1878354 10D08_rep_A_Chlorotrianisenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202357364-1878354 10D08_rep_A_Chlorotrianisenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample209_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/395.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150932561-1865038 02G10_rep_D_Thioproperazine dimesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150932561-1865038 02G10_rep_D_Thioproperazine dimesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223802785-1870292 01A05_rep_C_Metformin hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223802785-1870292 01A05_rep_C_Metformin hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123634953-1876201 08B05_rep_C_Dacarbazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123634953-1876201 08B05_rep_C_Dacarbazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_C7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113948108-1922725 3_D7_STE2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113948108-1922725 3_D7_STE2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E10_id_MSn_negative.mzML at line 21
index 300 is out of bounds for axis 0 with size 300
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nadE_P4B9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (nadE_P4B9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090213/raw/18March2022_007_VH HW Trang 10x_pos  3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151207749-1924800 3_H9_SNF3_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151207749-1924800 3_H9_SNF3_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150240779-1864720 02E11_rep_B_Dexamethasone acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150240779-1864720 02E11_rep_B_Dexamethasone acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case258_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case258_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_G8_id_negative.mzML at line 21
index 286 is out of bounds for axis 0 with size 286
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/garD_P3F6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (garD_P3F6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D13_id_negative.mzML at line 21
index 254 is out of bounds for axis 0 with size 254
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlC1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlC1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201929550-1878143 09F11_rep_D_Cefmetazole_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201929550-1878143 09F11_rep_D_Cefmetazole_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H13_id_MSn_positive.mzML at line 21
index 688 is out of bounds for axis 0 with size 688
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121318361-1866888 04C06_rep_B_Dimenhydrinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121318361-1866888 04C06_rep_B_Dimenhydrinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122629337-1880020 15E04_rep_D_Aripiprazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122629337-1880020 15E04_rep_D_Aripiprazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_314_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092960/raw/DDA/DDA/20221111-JC-471_Sorghum_DDA_010_02.mzML at line 689
invalid character in attribute value, line 44285, column 54 (20221111-JC-471_Sorghum_DDA_010_02.mzML, line 44285)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1048.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151034677-1865086 02C02_rep_D_R(-) Apomorphine hydrochloride hemihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151034677-1865086 02C02_rep_D_R(-) Apomorphine hydrochloride hemihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123611958-1876183 08A01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123611958-1876183 08A01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153658189-1868724 06F05_rep_C_Linezolida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153658189-1868724 06F05_rep_C_Linezolida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152032378-1576714 Batch1_UMUC3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C3_id_MSn_negative.mzML at line 21
index 330 is out of bounds for axis 0 with size 330
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/675.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_B6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STE1_MS_RA2_01_22709.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151530310-1576465 Batch6_CALU1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fbaB_P3F11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (fbaB_P3F11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_06P_A8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHF14.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_69.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0001_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0001_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121313753-1879415 15B08_rep_A_Carvedilolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121313753-1879415 15B08_rep_A_Carvedilolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201523729-1881957 16G04_rep_C_Tolterodine_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201523729-1881957 16G04_rep_C_Tolterodine_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp2/20180309173115040-1989063 wound 5da.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_9_male_2022_1017_Michael_neg-0.0027.mzML at line 689
Premature end of data in tag binary line 20187, line 20187, column 1019506 (2_9_male_2022_1017_Michael_neg-0.0027.mzML, line 20187)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/301.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122322718-1867363 04C05_rep_D_Dyclonine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122322718-1867363 04C05_rep_D_Dyclonine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124712537-1876708 09C01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124712537-1876708 09C01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091758292-1878525 13C01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091758292-1878525 13C01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101037162-1869273 07D04_rep_B_Norcyclobenzaprinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101037162-1869273 07D04_rep_B_Norcyclobenzaprinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122134699-1867276 04F07_rep_D_Acemetacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122134699-1867276 04F07_rep_D_Acemetacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E16_id_MSn_negative.mzML at line 21
index 308 is out of bounds for axis 0 with size 308
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121829896-1867129 04F08_rep_C_Benzydamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121829896-1867129 04F08_rep_C_Benzydamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_1_Liver_HO_control_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_1_Liver_HO_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111720093-1871617 10C02_rep_B_Nadidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111720093-1871617 10C02_rep_B_Nadidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121719831-1879601 15C03_rep_B_Dopamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121719831-1879601 15C03_rep_B_Dopamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170207_039EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c9/29eaf4591bc66c960a74a3984704e0/input_file/MMW4_20170207_039EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121401316-1866920 04C11_rep_B_Fendiline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121401316-1866920 04C11_rep_B_Fendiline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123317381-1876042 08A05_rep_B_Pentobarbitala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123317381-1876042 08A05_rep_B_Pentobarbitala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fbp_P3A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (fbp_P3A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_26.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_26.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151834069-1867863 05B04_rep_C_Zidovudine,_AZTb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151834069-1867863 05B04_rep_C_Zidovudine,_AZTb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_67.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_67.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172649914-1889907 Wb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224143650-1870462 01D04_rep_D_Diprophyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224143650-1870462 01D04_rep_D_Diprophyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_010ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/76/fec3e809f9ec0aa5bd921383afa8e0/input_file/QC_20170209_010ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/16032021_Batch06_QC_ 1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_G10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114053568-1874814 11F07_rep_D_Tolmetin_sodium_salt_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114053568-1874814 11F07_rep_D_Tolmetin_sodium_salt_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112348021-1921928 3_D2_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112348021-1921928 3_D2_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153020484-1868411 06C10_rep_A_Valacyclovir_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153020484-1868411 06C10_rep_A_Valacyclovir_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8C23.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/015_500uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/279.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153602090-1577468 Batch4_NCIH1666_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYD007.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153152358-1577265 Batch4_A427_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151333877-1576369 Batch6_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_E8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121552522-1867005 04D10_rep_B_Methylprednisolone,_6-alphab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121552522-1867005 04D10_rep_B_Methylprednisolone,_6-alphab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201413257-1877908 09F07_rep_C_Ethotoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201413257-1877908 09F07_rep_C_Ethotoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151655162-1925041 4_H9_SNF3_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151655162-1925041 4_H9_SNF3_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113623416-1922546 2_B9_IZH2_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113623416-1922546 2_B9_IZH2_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092508362-1878862 14F09_rep_B_Sarafloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092508362-1878862 14F09_rep_B_Sarafloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123628497-1876196 08E06_rep_C_Carbadoxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123628497-1876196 08E06_rep_C_Carbadoxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_185.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124300801-1862293 03A04_rep_A_Chlorzoxazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124300801-1862293 03A04_rep_A_Chlorzoxazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113507621-1922481 2_C2_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113507621-1922481 2_C2_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170209_053ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/75/4ec5a6d2550c5a107125cff0827f81/input_file/SH7_20170209_053ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ2_8 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2C03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/20221212_carryover_test_noISTD_PLASMA_sample07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malG_P3D10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (malG_P3D10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LY201.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiS_P3H8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (thiS_P3H8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112152412-1921827 3_A7_GPR1_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112152412-1921827 3_A7_GPR1_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153707973-1577523 Batch5_HCT15_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1426.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1426.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30244 - GI-18-011.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/006_Ammonia_Day7_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114358650-1922948 4_C10_STE2_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114358650-1922948 4_C10_STE2_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_62.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/205-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydaM_P3C5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (ydaM_P3C5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170125_056EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/72/8034a808dcf6f87575bf9ba165c369/input_file/MMW6_20170125_056EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122919029-1880153 15H08_rep_D_Rivastigmineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122919029-1880153 15H08_rep_D_Rivastigmineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152321619-1576848 Batch2_NCIH2444_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GA6_01_11898.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130048875-1863272 04E09_rep_A_Spiperonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130048875-1863272 04E09_rep_A_Spiperonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate24/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123130031-1875956 08C09_rep_B_Galanthamine_hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123130031-1875956 08C09_rep_B_Galanthamine_hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00077331.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111455818-1921084 1_F4_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111455818-1921084 1_F4_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR27_5h1a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 42570, column 143 (pBlateR27_5h1a.mzML, line 42570)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113351762-1922415 2_F8_IZH2_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113351762-1922415 2_F8_IZH2_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151453957-1576436 Batch6_OVCAR3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201137154-1881789 16A06_rep_B_Doxapram_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201137154-1881789 16A06_rep_B_Doxapram_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122553526-1879992 15H11_rep_D_Hexachlorophenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122553526-1879992 15H11_rep_D_Hexachlorophenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1420.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1420.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GD10_01_11506.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEP2_40EV_RA6_01_22523.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ7_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121729285-1879608 15G04_rep_B_Gemcitabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121729285-1879608 15G04_rep_B_Gemcitabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/266.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/003_Soil_500mMExtra_1_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125936289-1863213 04B11_rep_A_Praziquantelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125936289-1863213 04B11_rep_A_Praziquantelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113737087-1922610 3_A10_STE2_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113737087-1922610 3_A10_STE2_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nadR_P4E8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (nadR_P4E8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A1_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124917861-1862709 03E07_rep_B_Meclofenamic_acid_sodium_salt_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124917861-1862709 03E07_rep_B_Meclofenamic_acid_sodium_salt_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123058058-1875930 08G09_rep_A_Benazepril_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123058058-1875930 08G09_rep_A_Benazepril_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ansA_P3F12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (ansA_P3F12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223153331-1870010 01E02_rep_B_Procaine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223153331-1870010 01E02_rep_B_Procaine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122223325-1879831 15E04_rep_C_Aripiprazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122223325-1879831 15E04_rep_C_Aripiprazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007573_031718-5CRP3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_C4_id_negative.mzML at line 21
index 275 is out of bounds for axis 0 with size 275
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR33h2a.mzML at line 689
error parsing attribute name, line 158656, column 16 (pMIBSDR33h2a.mzML, line 158656)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165900728-2227565 PAT41.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2A05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_103.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111653362-1871596 10D05_rep_B_Fenoprofen_calcium_salt_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111653362-1871596 10D05_rep_B_Fenoprofen_calcium_salt_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113600179-1922526 2_B8_IZH2_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113600179-1922526 2_B8_IZH2_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GF7_01_16970.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1421.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1421.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152825454-1577098 Batch3_A549_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control125_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control125_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/967.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case189_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case189_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125119738-1876860 12A09_rep_C_Promethazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125119738-1876860 12A09_rep_C_Promethazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093118729-1879147 14G01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093118729-1879147 14G01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190113_ES_H3K_batch13_repB_191.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/931.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_O20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A6_id_MSn_negative.mzML at line 21
index 188 is out of bounds for axis 0 with size 188
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_E5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/menA_P5F9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (menA_P5F9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202501358-1878404 10F01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202501358-1878404 10F01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201516889-1877953 09G03_rep_C_Succinylsulfathiazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201516889-1877953 09G03_rep_C_Succinylsulfathiazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094202/ccms_peak/3DMM_pos_raw/Plate10/20220508_ACN_2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093049230-1879124 14H03_rep_C_Procarbazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093049230-1879124 14H03_rep_C_Procarbazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpBud1_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112606250-1874151 11A09_rep_A_Furazolidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112606250-1874151 11A09_rep_A_Furazolidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/301.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/684.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112637050-1922076 4_G8_GPR1_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112637050-1922076 4_G8_GPR1_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR13h2a.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082793/ccms_peak/raw/MTBLS227/37382-B04-1.mzXML at line 689
Premature end of data in tag peaks line 3729, line 3733, column 52909 (37382-B04-1.mzXML, line 3733)
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_AP_6.mzXML at line 689
Premature end of data in tag peaks line 2970, line 2974, column 11755 (L_AP_6.mzXML, line 2974)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113917976-1874737 11G11_rep_D_Luteolinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113917976-1874737 11G11_rep_D_Luteolinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150321261-1924349 1_E4_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150321261-1924349 1_E4_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123106281-1867731 05A10_rep_B_Tacrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123106281-1867731 05A10_rep_B_Tacrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case71_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case71_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111557011-1871553 10G04_rep_B_Clofibric_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111557011-1871553 10G04_rep_B_Clofibric_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlich1001R37_5h3a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 45257, column 673 (pBlich1001R37_5h3a.mzML, line 45257)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/722.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_C8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample082_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121508621-1866971 04D09_rep_B_Cinnarizineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121508621-1866971 04D09_rep_B_Cinnarizineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111725220-1921598 1_B1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111725220-1921598 1_B1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/001_Nitrate_Day9_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_13_40x_2022_1006_Michael_pos-0.0033.mzML at line 689
Premature end of data in tag binary line 2585, line 2585, column 910897 (1_13_40x_2022_1006_Michael_pos-0.0033.mzML, line 2585)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Blank_pesticide_Swabs_170403100611.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD074_P1-A-3_01_2387.mzML at line 689
Opening and ending tag mismatch: binary line 270733 and isolationWindow, line 270734, column 33 (CD074_P1-A-3_01_2387.mzML, line 270734)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114710730-1875113 12B09_rep_B_Dioxybenzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114710730-1875113 12B09_rep_B_Dioxybenzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124445266-1862376 03G06_rep_A_Nifenazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124445266-1862376 03G06_rep_A_Nifenazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201133137-1881786 16E02_rep_B_Cefuroxime_axetilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201133137-1881786 16E02_rep_B_Cefuroxime_axetilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ltaE_#2_P4A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (ltaE_#2_P4A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_52.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_C9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc1_T0_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_8_Blood_Ma_control_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_8_Blood_Ma_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224350235-1870562 01C01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224350235-1870562 01C01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125134447-1862818 03G11_rep_C_Phentolamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125134447-1862818 03G11_rep_C_Phentolamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_02_blood_control_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_02_blood_control_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_58_NOR_52.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_58_NOR_52.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130331398-1877419 13H02_rep_B_Halofantrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130331398-1877419 13H02_rep_B_Halofantrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiB_P4F9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (thiB_P4F9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD2_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113253882-1922364 1_E5_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113253882-1922364 1_E5_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_blank_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pssA_#3_P4D4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (pssA_#3_P4D4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114734249-1875131 12A02_rep_B_Niacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114734249-1875131 12A02_rep_B_Niacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD6_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F5_id_MSn_negative.mzML at line 21
index 307 is out of bounds for axis 0 with size 307
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_H8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112831168-1874266 11C09_rep_A_Viloxazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112831168-1874266 11C09_rep_A_Viloxazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated8hB2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated8hB2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153441656-1577402 Batch4_SW780_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121315022-1879416 15A06_rep_A_Fleroxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121315022-1879416 15A06_rep_A_Fleroxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dadX_P4C9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (dadX_P4C9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B11P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151255541-1576337 Batch5_PC14PE6_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145614476-1863934 02H05_rep_A_Josamycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145614476-1863934 02H05_rep_A_Josamycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-026.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-026.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124222484-1876478 08G07_rep_D_Racecadotrila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124222484-1876478 08G07_rep_D_Racecadotrila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_133.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike4_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_H9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfJ_P3A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (hyfJ_P3A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M4_id_MSn_positive.mzML at line 21
index 329 is out of bounds for axis 0 with size 329
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7D06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007495_031618-Unst4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201102410-1881763 16A11_rep_B_Troxipidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201102410-1881763 16A11_rep_B_Troxipidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007701_032218-5CRP6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_F4_id_MSn_negative.mzML at line 21
index 334 is out of bounds for axis 0 with size 334
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBsubR23h1b.mzML at line 689
Opening and ending tag mismatch: binary line 140806 and binaryDataArrayList, line 140819, column 33 (pBsubR23h1b.mzML, line 140819)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123321189-1876045 08D01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123321189-1876045 08D01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_19032112_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_11_leg_muscle_RESV_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_11_leg_muscle_RESV_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/dpcoa_coaE_P4G4_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (dpcoa_coaE_P4G4_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ansP_P4E5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ansP_P4E5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_3_RESV_200uM_NEG.mzXML at line 689
attributes construct error, line 38, column 83 (C2C12_3_RESV_200uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151900342-1576640 Batch5_HCC1187_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2A10Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ahpF_P4B5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ahpF_P4B5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case162_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case162_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_008EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c3/d81b8ee91b97675b433d6851d7281d/input_file/QC_20170207_008EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224243463-1870509 01G11_rep_D_Tolnaftatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224243463-1870509 01G11_rep_D_Tolnaftatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_120_1C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S22.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S22.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150239724-1924315 1_H11_RGT2_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150239724-1924315 1_H11_RGT2_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200853938-1881668 16B04_rep_A_Rizatriptan_benzoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200853938-1881668 16B04_rep_A_Rizatriptan_benzoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113018102-1922232 1_G2_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113018102-1922232 1_G2_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151504049-1924952 4_B9_SNF3_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151504049-1924952 4_B9_SNF3_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F8_id_MSn_positive.mzML at line 21
index 421 is out of bounds for axis 0 with size 421
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_C3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiP_#1_P4H2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (thiP_#1_P4H2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET104.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET104.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ldtA_P4C8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ldtA_P4C8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151154877-1924789 3_F4_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151154877-1924789 3_F4_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152229529-1868050 05C07_rep_D_Maprotiline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152229529-1868050 05C07_rep_D_Maprotiline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4H04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145934189-1864095 02D04_rep_B_Ciprofloxacin hydrochloride monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145934189-1864095 02D04_rep_B_Ciprofloxacin hydrochloride monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/945.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112645050-1922083 4_A7_GPR1_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112645050-1922083 4_A7_GPR1_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_J6_id_MSn_negative.mzML at line 21
index 321 is out of bounds for axis 0 with size 321
Error processing file: /data/datasets/server/MassIVE/MSV000088638/raw/Original experiment/Intracellular/24h exposure/NonPolar_Fraction_ESI-/MS1/I24H1_NP_NEG.mzML at line 689
Premature end of data in tag binary line 11782, line 11782, column 214878 (I24H1_NP_NEG.mzML, line 11782)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152436029-1576907 Batch2_VMCUB1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_24_Blood_EtOH_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_24_Blood_EtOH_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201005588-1877727 09H01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201005588-1877727 09H01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D4_id_negative.mzML at line 21
index 240 is out of bounds for axis 0 with size 240
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114024035-1922757 3_H11_STE2_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114024035-1922757 3_H11_STE2_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113533584-1874557 11H09_rep_C_Ioversolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113533584-1874557 11H09_rep_C_Ioversolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202027108-1882190 16C07_rep_D_Avobenzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202027108-1882190 16C07_rep_D_Avobenzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223443566-1870139 01G10_rep_B_Acebutolol hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223443566-1870139 01G10_rep_B_Acebutolol hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case104_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case104_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122058629-1879767 15H08_rep_B_Rivastigmineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122058629-1879767 15H08_rep_B_Rivastigmineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224325176-1870542 01B08_rep_D_Levodopab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224325176-1870542 01B08_rep_D_Levodopab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gadA_#1_P4C10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (gadA_#1_P4C10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/668.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112227288-1873591 10F01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112227288-1873591 10F01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112225879-1921856 3_F8_GPR1_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112225879-1921856 3_F8_GPR1_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/selD_#1_P3G11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (selD_#1_P3G11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/695.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/923.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153917681-1577632 Batch7_UO31_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125224755-1876909 12D02_rep_C_(+)-Isoproterenol_(+)-bitartrate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125224755-1876909 12D02_rep_C_(+)-Isoproterenol_(+)-bitartrate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152137999-1576766 Batch2_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O19_id_negative.mzML at line 21
index 233 is out of bounds for axis 0 with size 233
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/51-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130043617-1877289 13A01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130043617-1877289 13A01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125703770-1863085 03F09_rep_D_Fenbufenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125703770-1863085 03F09_rep_D_Fenbufenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_E10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_B4_id_negative.mzML at line 21
index 265 is out of bounds for axis 0 with size 265
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample120_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152150893-1868021 05F06_rep_C_Methiothepin_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152150893-1868021 05F06_rep_C_Methiothepin_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A12_id_MSn_negative.mzML at line 21
index 198 is out of bounds for axis 0 with size 198
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125952513-1877253 13C02_rep_A_Nitrocaramiphen_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125952513-1877253 13C02_rep_A_Nitrocaramiphen_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_low (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_63.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pyrD_P4G9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (pyrD_P4G9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_QC0.mzXML at line 689
Premature end of data in tag peaks line 15909, line 15913, column 40427 (L_QC0.mzXML, line 15913)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130339265-1877425 13A05_rep_B_Methacycline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130339265-1877425 13A05_rep_B_Methacycline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_H8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153532199-1868654 06D04_rep_C_Cyanocobalamina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153532199-1868654 06D04_rep_C_Cyanocobalamina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-blank (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_140.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_140.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201240031-1881836 16F07_rep_B_Flumethasone_pivalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201240031-1881836 16F07_rep_B_Flumethasone_pivalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201229849-1877832 09C07_rep_B_Nisoldipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201229849-1877832 09C07_rep_B_Nisoldipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_F3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mltD_P3C2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (mltD_P3C2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD3_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pdxK_P3H10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (pdxK_P3H10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113926704-1874744 11F02_rep_D_Paroxetine_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113926704-1874744 11F02_rep_D_Paroxetine_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113802775-1922632 3_B10_STE2_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113802775-1922632 3_B10_STE2_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2B08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153420650-1577385 Batch4_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165720542-2227473 PAT38.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112343518-1921924 3_F1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112343518-1921924 3_F1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA13.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/003_Ammonia_Day9_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_Batch03_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/ccms_peak/Raw_Spectrum_Files/ALZ_FCX_P_E2E3_AD_02Feb18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_V11_009_prot_18_IMS_26Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_A16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_L11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_global_HFD15_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190127155155.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_23_2022_1003_Michael_leming_liver_neg-0.0047.mzML at line 689
Premature end of data in tag scanWindow line 15316, line 15318, column 14 (3_23_2022_1003_Michael_leming_liver_neg-0.0047.mzML, line 15318)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202450985-1878396 10D05_rep_A_Fenoprofen_calcium_salt_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202450985-1878396 10D05_rep_A_Fenoprofen_calcium_salt_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_A8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_D3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_A12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121754166-1879627 15H01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121754166-1879627 15H01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B02Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_L4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEE2_MS_RA6_01_22592.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ygaP_#1_P5C1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (ygaP_#1_P5C1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223518745-1870166 01C06_rep_B_Thiamphenicolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223518745-1870166 01C06_rep_B_Thiamphenicolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P16_id_negative.mzML at line 21
index 261 is out of bounds for axis 0 with size 261
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113653415-1874621 11A07_rep_C_Trimipramine_maleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113653415-1874621 11A07_rep_C_Trimipramine_maleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092627/ccms_peak/Raw_Spectrum_Files/ALZ_FCX_P_E3E4_AD_02Feb18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125811811-1863142 04D01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125811811-1863142 04D01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GG8_01_16985.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/spoT_P4E6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (spoT_P4E6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151345831-1576379 Batch6_NCIH2171_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083351/ccms_peak/BAs Animals one group/Desktop/WirelessDiagnostics-C02MR6WTG086-20160515121338 2/UserDiagnosticReports/.Spotify Helper_2016-04-30-023021_Ninas-MacBook-Air-3.crash.plist at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092918647-1879057 14B04_rep_C_Pivmecillinam_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092918647-1879057 14B04_rep_C_Pivmecillinam_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152620192-1868226 06F09_rep_A_Melatonina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152620192-1868226 06F09_rep_A_Melatonina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxM_P5C10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (lpxM_P5C10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-096_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B12P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GB6_01_11635.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GA12_01_11626.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145834429-1864047 02C07_rep_A_Nicorandila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145834429-1864047 02C07_rep_A_Nicorandila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD2_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/392.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GB9_01_11641.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2C07Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_103.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123733143-1876247 08C08_rep_C_Cilostazolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123733143-1876247 08C08_rep_C_Cilostazolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111647857-1921566 1_H11_GAP1_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111647857-1921566 1_H11_GAP1_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_206.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-std.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-std.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125410830-1876990 12G10_rep_D_(+,-)-Octopamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125410830-1876990 12G10_rep_D_(+,-)-Octopamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101828806-1869651 07E10_rep_D_Mesoridazine_besylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101828806-1869651 07E10_rep_D_Mesoridazine_besylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112208636-1921841 3_H4_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112208636-1921841 3_H4_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092933683-1879069 14E04_rep_C_Isosorbide_mononitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092933683-1879069 14E04_rep_C_Isosorbide_mononitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222858919-1869879 01D05_rep_A_Triamterenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222858919-1869879 01D05_rep_A_Triamterenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/NUGT_Baicalein_neg_cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113803911-1922633 3_B10_STE2_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113803911-1922633 3_B10_STE2_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H8_id_MSn_negative.mzML at line 21
index 359 is out of bounds for axis 0 with size 359
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-059_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223938617-2227721 PAT39.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080030/ccms_peak/Forensic_study_80_volunteers/Forensic_Hands_mzXML/Forensic_Hands_plate_1_mzXML/.DS_Store at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125030505-1876824 12A07_rep_C_Clioquinolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125030505-1876824 12A07_rep_C_Clioquinolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202353645-1878351 10E02_rep_A_Butambenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202353645-1878351 10E02_rep_A_Butambenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_E9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210314_LKM_control_nobeads_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ7_5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122403986-1867396 04C09_rep_D_Vinpocetinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122403986-1867396 04C09_rep_D_Vinpocetinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hC1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hC1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_E4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rffG_P3H6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (rffG_P3H6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125756022-1863129 04F10_rep_A_Mifepristoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125756022-1863129 04F10_rep_A_Mifepristoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150429738-1924407 1_C8_RGT2_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150429738-1924407 1_C8_RGT2_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/001_Nitrate_Day14_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E5_id_MSn_positive.mzML at line 21
index 426 is out of bounds for axis 0 with size 426
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_blood_4h_POS.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer1_blood_4h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201952778-1882163 16B11_rep_D_Estramustinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201952778-1882163 16B11_rep_D_Estramustinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dtpB_P3E12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (dtpB_P3E12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153447808-1577407 Batch5_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201458199-1877941 09H02_rep_C_Sulfabenzamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201458199-1877941 09H02_rep_C_Sulfabenzamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D2_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/469-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_61.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GB9_01_11473.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potF_P3C5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (potF_P3C5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202324570-1878328 10B11_rep_A_Ebselena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202324570-1878328 10B11_rep_A_Ebselena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malG_P3D10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (malG_P3D10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_dilute.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GG6_01_17102.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD1_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130114913-1877313 13C11_rep_B_Phenylbutazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130114913-1877313 13C11_rep_B_Phenylbutazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_A2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlA2b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlA2b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/51-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/QC_3_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151259424-1576340 Batch7_CORL88_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD3_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223725255-2227605 Healthy7.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C2_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121724525-1867078 04H03_rep_C_Flunarizine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121724525-1867078 04H03_rep_C_Flunarizine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I20_id_MSn_negative.mzML at line 21
index 315 is out of bounds for axis 0 with size 315
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mepM_P3C7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (mepM_P3C7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8C23.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112803186-1922152 4_D10_GPR1_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112803186-1922152 4_D10_GPR1_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_CABIN_sample03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/749.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F16_id_negative.mzML at line 21
index 253 is out of bounds for axis 0 with size 253
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151444175-1924935 4_F11_SNF3_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151444175-1924935 4_F11_SNF3_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GB4_01_17151.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000085888/peak/peak/10_hydroxygeissoschizol.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113238568-1874454 11B08_rep_B_Deflazacorta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113238568-1874454 11B08_rep_B_Deflazacorta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR13h3a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 130051, column 4470 (pBlateR13h3a.mzML, line 130051)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152843060-1577113 Batch3_NCIH322M_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yfcG_#2_P4G3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (yfcG_#2_P4G3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007621_032118-Unst6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145806849-1864025 02B11_rep_A_Nocodazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145806849-1864025 02B11_rep_A_Nocodazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125221415-1862856 03B07_rep_C_Iproniazide_phosphatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125221415-1862856 03B07_rep_C_Iproniazide_phosphatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw2_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G12_id_MSn_positive.mzML at line 21
index 397 is out of bounds for axis 0 with size 397
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152311653-1576840 Batch2_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_06_leg_skin_RESV_oral_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_06_leg_skin_RESV_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112026343-1873015 10F11_rep_C_Cinoxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112026343-1873015 10F11_rep_C_Cinoxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/698.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113030358-1922241 1_C11_IZH2_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113030358-1922241 1_C11_IZH2_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/584.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114410186-1874974 12H09_rep_A_Urosiola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114410186-1874974 12H09_rep_A_Urosiola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080030/ccms_peak/Forensic_study_80_volunteers/Forensic_Objects_mzXML/Forensic_Objects_plate_B_mzXML/.DS_Store at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_68.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_242_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153356318-1868578 06C06_rep_B_Chicago_sky_blue_6Ba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153356318-1868578 06C06_rep_B_Chicago_sky_blue_6Ba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_2_RESV_20uM_NEG.mzXML at line 689
attributes construct error, line 38, column 82 (C2C12_2_RESV_20uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_C12_id_positive.mzML at line 21
index 351 is out of bounds for axis 0 with size 351
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125925530-1877232 13A07_rep_A_Sotalol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125925530-1877232 13A07_rep_A_Sotalol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HaCaT_1_RESV_20uM_NEG.mzXML at line 689
attributes construct error, line 38, column 82 (HaCaT_1_RESV_20uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/850.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101541565-1869514 07C04_rep_C_Cetirizine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101541565-1869514 07C04_rep_C_Cetirizine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201809245-1878082 09E01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201809245-1878082 09E01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_261.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_O15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N19_id_MSn_negative.mzML at line 21
index 377 is out of bounds for axis 0 with size 377
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_49.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alsC_P4G6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (alsC_P4G6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D4_id_negative.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw4_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_4_Blood_HO_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 86 (Mouse_4_Blood_HO_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C5_id.mzML at line 21
index 591 is out of bounds for axis 0 with size 591
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/201901027_ES_H3K_batch15B_repC_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N16_id_MSn_negative.mzML at line 21
index 331 is out of bounds for axis 0 with size 331
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_121.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151251382-1924838 3_H10_SNF3_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151251382-1924838 3_H10_SNF3_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S130.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S130.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5C01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/menD_P3C1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (menD_P3C1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/umpG_P3B7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (umpG_P3B7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/plsC_P3A2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (plsC_P3A2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control125_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control125_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_012ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/1c/83797ece55582480668013d7a1a6a0/input_file/QC_20170209_012ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124751402-1862640 03F03_rep_B_Pyrantel_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124751402-1862640 03F03_rep_B_Pyrantel_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample201_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xdhB_#2_P4F4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (xdhB_#2_P4F4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172702861-1889917 NNb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114155075-1922838 4_D10_STE2_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114155075-1922838 4_D10_STE2_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222913505-1869890 01E08_rep_A_Ticlopidine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222913505-1869890 01E08_rep_A_Ticlopidine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30089 - GI-16-234.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_med (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1041.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_sample09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H8_id_MSn_positive.mzML at line 21
index 703 is out of bounds for axis 0 with size 703
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/blank_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_O19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130149715-1877340 13C02_rep_B_Nitrocaramiphen_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130149715-1877340 13C02_rep_B_Nitrocaramiphen_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223845348-2227675 Healthy4.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_109b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/galM_P3F3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (galM_P3F3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-4-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150343928-1924368 1_C10_RGT2_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150343928-1924368 1_C10_RGT2_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079773/ccms_peak/Body16_Swabs/C06_Swab_2012_016_10_C.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_249.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151222504-1924813 3_A5_WT_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151222504-1924813 3_A5_WT_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample176_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acrD_P3E2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (acrD_P3E2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_RBC_1h_POS.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer4_RBC_1h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_H5_01_12184.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control127_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control127_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152839491-1577110 Batch3_A549_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121438390-1866948 04E11_rep_B_Sulfinpyrazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121438390-1866948 04E11_rep_B_Sulfinpyrazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR17_5h1a.mzML at line 689
error parsing attribute name, line 228138, column 28 (pBlateR17_5h1a.mzML, line 228138)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GG2_01_16979.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_blank_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ4_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102011414-1869734 07G10_rep_D_Trimetazidine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102011414-1869734 07G10_rep_D_Trimetazidine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_65.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_65.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hC1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hC1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/CPV_P_rep_2_B-E5_1_5677.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_011EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/8e/29f45e6864170b1de205712e0b469a/input_file/QC_20170207_011EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_B2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_B2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD1_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092153/peak/Sample0001.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223833889-2227665 PAT46.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G06P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B20_id_MSn_negative.mzML at line 21
index 317 is out of bounds for axis 0 with size 317
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYB012B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_2_P_rep_4_B-B2_1_5830.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD6_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152234961-1576811 Batch1_NCIH1993_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153712953-1868736 06C04_rep_C_Carisoprodola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153712953-1868736 06C04_rep_C_Carisoprodola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M11_id_MSn_positive.mzML at line 21
index 529 is out of bounds for axis 0 with size 529
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlB3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlB3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/439.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150746924-1864956 02G02_rep_D_Verapamil hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150746924-1864956 02G02_rep_D_Verapamil hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151632455-1576517 Batch7_HCC38_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD2_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/proX_#1_P4E4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (proX_#1_P4E4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_10_B.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_175.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124920983-1876772 12C02_rep_C_Hymecromonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124920983-1876772 12C02_rep_C_Hymecromonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124408773-1876565 09B06_rep_A_Halcinonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124408773-1876565 09B06_rep_A_Halcinonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170207_064EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/1f/271c98540288e0c5cb19214632871c/input_file/SH7_20170207_064EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L1cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L1cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yahK_P4G2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (yahK_P4G2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNY228_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223917213-2227702 PAT37.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/824.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dtpA_P3G1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (dtpA_P3G1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1534.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1534.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pncC_P3H10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (pncC_P3H10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2A02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112738454-1922130 4_B1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112738454-1922130 4_B1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8D05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/898.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111655808-1871598 10G08_rep_B_Merbrominb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111655808-1871598 10G08_rep_B_Merbrominb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/speD_P4E11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (speD_P4E11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G9_id_MSn_positive.mzML at line 21
index 403 is out of bounds for axis 0 with size 403
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125539823-1863017 03C08_rep_D_Catharanthineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125539823-1863017 03C08_rep_D_Catharanthineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 2-30187 - GI-16-650.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_41_AC+_30.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBsubR324h3b.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200827964-1881649 16H09_rep_A_Brimonidine_L-Tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200827964-1881649 16H09_rep_A_Brimonidine_L-Tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_181.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122450870-1867434 04E01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122450870-1867434 04E01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151907720-1576646 Batch5_COLO205_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152602198-1576978 Batch2_BXPC3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/queD_P3C5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (queD_P3C5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_1mM_D_AC_AS_Pos.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_1mM_D_AC_AS_Pos.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152931233-1577154 Batch5_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7E06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/004_Nitrate_Day17_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_sp_WTHF07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purM_P6B10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (purM_P6B10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152414554-1576890 Batch2_NCIH596_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112206145-1873574 10H05_rep_D_Eucatropine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112206145-1873574 10H05_rep_D_Eucatropine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180430_ES_H3K_batch4_repA_57.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purL_P5G10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (purL_P5G10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I6_id_MSn_negative.mzML at line 21
index 331 is out of bounds for axis 0 with size 331
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GG2_01_11545.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_18092931_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125057231-1876844 12A04_rep_C_Digoxigeninb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125057231-1876844 12A04_rep_C_Digoxigeninb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201512627-1881950 16G07_rep_C_Alosetron_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201512627-1881950 16G07_rep_C_Alosetron_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201746455-1882064 16D03_rep_C_Pidotimodb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201746455-1882064 16D03_rep_C_Pidotimodb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1D03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201907362-1878126 09G07_rep_D_Chlorcyclizine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201907362-1878126 09G07_rep_D_Chlorcyclizine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081119/ccms_peak/Beers19_ms2ldaPLUS/NEGmode/Beer_multibeers_19_T10_NEG.mzXML at line 88
Invalid base64-encoded string: number of data characters (11377) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argO_P3G7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024988 (argO_P3G7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100222693-1868879 06D09_rep_D_Doxorubicin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100222693-1868879 06D09_rep_D_Doxorubicin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0038_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0038_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170209_067ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/10/357718926ce71063d983d1298c0eb6/input_file/SH8_20170209_067ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_113.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_113.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Kocuria_palustris_MER_TA_14.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_22.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_22.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092417667-1878822 14F08_rep_A_(-)-Isoproterenol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092417667-1878822 14F08_rep_A_(-)-Isoproterenol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc058_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc058_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151152941-1576285 Batch5_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153001335-1868398 06C09_rep_A_Roxatidine_Acetate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153001335-1868398 06C09_rep_A_Roxatidine_Acetate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C19_id_MSn_positive.mzML at line 21
index 598 is out of bounds for axis 0 with size 598
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113034471-1922244 1_C7_IZH2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113034471-1922244 1_C7_IZH2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100718030-1869115 07D11_rep_A_Sulfasalazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100718030-1869115 07D11_rep_A_Sulfasalazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_37.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_37.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET133.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET133.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/18_D24062013T2013_1399CBU_0007_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130023143-1863251 04A10_rep_A_Bupropion_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130023143-1863251 04A10_rep_A_Bupropion_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114819410-1875167 12C05_rep_B_Metyraponeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114819410-1875167 12C05_rep_B_Metyraponeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_L3_id_MSn_negative.mzML at line 21
index 362 is out of bounds for axis 0 with size 362
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112511385-1922001 3_F4_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112511385-1922001 3_F4_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/263.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_C11_id_negative.mzML at line 21
index 304 is out of bounds for axis 0 with size 304
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/649.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_C9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_129a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122206594-1879818 15F09_rep_C_Telmisartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122206594-1879818 15F09_rep_C_Telmisartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/napH_P3C7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (napH_P3C7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/006_Soil_500mMIntra_2_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control229_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control229_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_122.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET22.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET22.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165733688-2227485 PAT47.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_391.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097681/peak/amino acids/030521-b1-RN-6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_G7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_05_881_prot_39_IMS_15Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151509049-1576448 Batch7_CORL88_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150835238-1924617 2_C5_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150835238-1924617 2_C5_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152645574-1868246 06H04_rep_A_Cefotetana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152645574-1868246 06H04_rep_A_Cefotetana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc050_neg.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc050_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081772.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201529865-1877962 09C05_rep_C_Loratadinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201529865-1877962 09C05_rep_C_Loratadinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153700724-1577517 Batch4_DU145_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_01_leg_skin_control_oral_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_01_leg_skin_control_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170127_014ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e9/a2d516e38eb99f7da663bf2217ace7/input_file/SH7_20170127_014ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_2_B-A2_1_5816.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00072392.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pfo_P4E1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (pfo_P4E1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111513036-1871519 10B03_rep_B_Streptozotocina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111513036-1871519 10B03_rep_B_Streptozotocina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHD09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152507772-1576933 Batch2_OVCAR8_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/CORN_AAW3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_sample05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J18_id_negative.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202435672-1878384 10F05_rep_A_Fluocinonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202435672-1878384 10F05_rep_A_Fluocinonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200847189-1881663 16A02_rep_A_Nelfinavir_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200847189-1881663 16A02_rep_A_Nelfinavir_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125639793-1877104 12G06_rep_D_Salmeterolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125639793-1877104 12G06_rep_D_Salmeterolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123750757-1876261 08E04_rep_C_Zafirlukastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123750757-1876261 08E04_rep_C_Zafirlukastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_F9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/19_D24062013T2042_1399CBU_0013_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD4_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092030448-1878645 14E10_rep_A_(S)-(-)-Cycloserineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092030448-1878645 14E10_rep_A_(S)-(-)-Cycloserineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_E7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152940651-1868382 06A07_rep_A_Delavirdinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152940651-1868382 06A07_rep_A_Delavirdinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/228.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC02.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD3_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8G01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_B7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_N11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_113.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG006A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145851898-1864061 02F02_rep_A_Glipizidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145851898-1864061 02F02_rep_A_Glipizidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151351505-1924890 4_H1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151351505-1924890 4_H1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample035_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD5_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine76cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-17_Urine76cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093092/peak/mzML/MSD1{.CDF}.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tqsA_P3C5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (tqsA_P3C5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/318.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_P6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wbbJ_P5B10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (wbbJ_P5B10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201013586-1881727 16F01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201013586-1881727 16F01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152600997-1576977 Batch1_NCIH1395_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123717688-1876235 08E05_rep_C_Butenafine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123717688-1876235 08E05_rep_C_Butenafine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR37_5h1b.mzML at line 689
Opening and ending tag mismatch: binary line 251596 and scanWindow, line 251597, column 30 (pBpumR37_5h1b.mzML, line 251597)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case55_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case55_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person09_blood_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 101 (Person09_blood_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD6_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH23.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GH5_01_16881.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190117_ES_H3K_batch14_repA_214.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mtn_#1_P5H10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (mtn_#1_P5H10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_84.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114127478-1922813 4_D8_STE2_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114127478-1922813 4_D8_STE2_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case75_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case75_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_E8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165716154-2227469 PAT36.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111808227-1921635 2_G10_GAP1_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111808227-1921635 2_G10_GAP1_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222933054-1869905 01E11_rep_A_Lidocaine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222933054-1869905 01E11_rep_A_Lidocaine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_A11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113135182-1922296 1_E9_IZH2_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113135182-1922296 1_E9_IZH2_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_A4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/615.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_22_Liver_EtOH_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_22_Liver_EtOH_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/CORN_AD2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152624937-1576997 Batch1_HCC15_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Heart_raw files/Lumos_ISAS_heart_labeled_1.mzML at line 689
Premature end of data in tag spectrumList line 92, line 32221, column 1 (Lumos_ISAS_heart_labeled_1.mzML, line 32221)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3E03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fumB_P3F11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (fumB_P3F11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151920771-1576657 Batch7_NCIH510_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125931852-1877237 13F07_rep_A_Moxonidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125931852-1877237 13F07_rep_A_Moxonidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150509352-1864834 02D02_rep_C_Naloxone hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150509352-1864834 02D02_rep_C_Naloxone hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1K009.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180428_ES_H3K_batch3_repB_35.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/620.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086335/ccms_peak/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Diaporthe CarGL-23A/M23AS7_a.mzML at line 689
error parsing attribute name, line 6815, column 1500 (M23AS7_a.mzML, line 6815)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202522804-1878421 10C06_rep_A_Spiramycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202522804-1878421 10C06_rep_A_Spiramycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123803396-1876271 08A05_rep_C_Pentobarbitalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123803396-1876271 08A05_rep_C_Pentobarbitalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201712537-1878039 09H07_rep_C_Pramoxine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201712537-1878039 09H07_rep_C_Pramoxine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100506110-1869008 06A02_rep_D_Testosterone_propionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100506110-1869008 06A02_rep_D_Testosterone_propionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argD_#3_P5F12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (argD_#3_P5F12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223836169-2227667 PAT46.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1H002B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L5_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124433043-1876585 09B08_rep_A_Benzamil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124433043-1876585 09B08_rep_A_Benzamil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/abgA_#1_P5D5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (abgA_#1_P5D5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121634352-1867038 04G07_rep_B_Clemastine_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121634352-1867038 04G07_rep_B_Clemastine_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pldB_P4H4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (pldB_P4H4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYD023A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151515982-1576453 Batch7_KM12_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_172.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S2cells_clear_1_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_I18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/005_Urea_Day17_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/929.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control66_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control66_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-074.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-074.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200917868-1877692 09G04_rep_B_Famprofazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200917868-1877692 09G04_rep_B_Famprofazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yddG_P3F4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (yddG_P3F4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124852766-1862689 03D08_rep_B_Metaraminol_bitartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124852766-1862689 03D08_rep_B_Metaraminol_bitartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNS654_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_61_AC+_40.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_high.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Penicillium_commune_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114406647-1874971 12A03_rep_A_Bemegrideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114406647-1874971 12A03_rep_A_Bemegrideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152714680-1868268 06E02_rep_A_Estradiol-17_betaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152714680-1868268 06E02_rep_A_Estradiol-17_betaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151104651-1924746 3_G10_SNF3_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151104651-1924746 3_G10_SNF3_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121104898-1879319 14E01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121104898-1879319 14E01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089385/raw/TOF_T3_pos_MS1/TOF_T3_Pos-JC-1058-36_02.mzML at line 689
Premature end of data in tag binary line 65510, line 65510, column 21810 (TOF_T3_Pos-JC-1058-36_02.mzML, line 65510)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121652382-1879580 15D01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121652382-1879580 15D01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_QC_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150738048-1924568 2_E2_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150738048-1924568 2_E2_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD4_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151519677-1576456 Batch7_CORL23_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151240101-1576324 Batch5_NCIH446_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130822384-1877649 13B07_rep_C_Tracazolate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130822384-1877649 13B07_rep_C_Tracazolate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metF_P3E9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (metF_P3E9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD1_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case117_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case117_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R124h2a.mzML at line 689
Opening and ending tag mismatch: binary line 135754 and spectrum, line 135783, column 20 (pBlichMO17R124h2a.mzML, line 135783)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_C12_id_MSn_negative.mzML at line 21
index 267 is out of bounds for axis 0 with size 267
Error processing file: /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/MS2/MC_MS_MS Neg 1_2_3_4 Reps/DataMS_Neg_1_2_3_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/MS2/MC_MS_MS Neg 1_2_3_4 Reps/DataMS_Neg_1_2_3_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223203959-1870018 01C07_rep_B_Cimetidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223203959-1870018 01C07_rep_B_Cimetidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N5_id_MSn_negative.mzML at line 21
index 344 is out of bounds for axis 0 with size 344
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_CABIN_sample04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122042752-1867234 04E06_rep_C_Chenodiola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122042752-1867234 04E06_rep_C_Chenodiola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153524589-1577437 Batch5_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_010EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/5c/6b06737b4d82a81301c194e09098cf/input_file/QC_20170207_010EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124355235-1876554 09F07_rep_A_Ethotoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124355235-1876554 09F07_rep_A_Ethotoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_MICU_063_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/222.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123150945-1875973 08B04_rep_B_Troglitazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123150945-1875973 08B04_rep_B_Troglitazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100456300-1869000 06G10_rep_D_Niridazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100456300-1869000 06G10_rep_D_Niridazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_E4_01_12209.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tdcC_P4H12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (tdcC_P4H12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125646401-1877109 13A11_rep_A_Indatraline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125646401-1877109 13A11_rep_A_Indatraline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S103.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S103.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153406429-1868586 06A05_rep_B_Idebenonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153406429-1868586 06A05_rep_B_Idebenonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_D9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124920103-1862711 03B11_rep_B_Flutamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124920103-1862711 03B11_rep_B_Flutamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ptsH_P3G2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (ptsH_P3G2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009624_IBD200_E17_B4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/24 Sept 2021 - Copy/convert/210924_08.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2D01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113740527-1922613 3_E11_STE2_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113740527-1922613 3_E11_STE2_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153107625-1577229 Batch3_NCIH661_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30076 - GI-14-600.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201120742-1877782 09G07_rep_B_Chlorcyclizine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201120742-1877782 09G07_rep_B_Chlorcyclizine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122001265-1879723 15G01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122001265-1879723 15G01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112602830-1922046 4_H1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112602830-1922046 4_H1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/trans-zeatin.mzXML at line 689
Premature end of data in tag msRun line 5, line 19453, column 1 (trans-zeatin.mzXML, line 19453)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD5_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/kdo_kdsB_P3G1_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024911 (kdo_kdsB_P3G1_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122942992-1875871 08F03_rep_A_Fenipentolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122942992-1875871 08F03_rep_A_Fenipentolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_250.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090651/raw/030422_SH_IO6_DDA2.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_403.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151517268-1576454 Batch6_HCC1937_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GD9_01_12123.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223757440-2227633 PAT42.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113207391-1922324 1_B11_IZH2_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113207391-1922324 1_B11_IZH2_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_G10_id_MSn_negative.mzML at line 21
index 352 is out of bounds for axis 0 with size 352
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_sideromix_pos_IMS1_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2C10P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_B8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_A6_id_positive.mzML at line 21
index 325 is out of bounds for axis 0 with size 325
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223747337-1870280 01A01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223747337-1870280 01A01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/betT_#2_P3H11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (betT_#2_P3H11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123206863-1875986 08B11_rep_B_Argatrobana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123206863-1875986 08B11_rep_B_Argatrobana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6D05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_M19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D9_id_MSn_negative.mzML at line 21
index 278 is out of bounds for axis 0 with size 278
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d3_295_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 43393, column 1 (SysVirol_IFT001_Cal04RG_d3_295_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 43393)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C22_id_MSn_positive.mzML at line 21
index 676 is out of bounds for axis 0 with size 676
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113932747-1874749 11D07_rep_D_Indoprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113932747-1874749 11D07_rep_D_Indoprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151920865-1867900 05G04_rep_C_Nicardipine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151920865-1867900 05G04_rep_C_Nicardipine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151841468-1576624 Batch7_NCIH209_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F11_id_MSn_negative.mzML at line 21
index 322 is out of bounds for axis 0 with size 322
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_101.mzXML at line 689
Premature end of data in tag msRun line 5, line 21363, column 1 (20121114_101.mzXML, line 21363)
Error processing file: /data/datasets/server/MassIVE/MSV000090325/raw/MALDI-IMS EUTERPE OLERACEA SEED/20191129_felipebrum_acai_01.imzML at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEE1_40EV_RA4_01_22731.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2B03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/58-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150623323-1864891 02E03_rep_C_Amfepramone hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150623323-1864891 02E03_rep_C_Amfepramone hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_07_liver_control_skin_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_07_liver_control_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124951834-1876795 12G04_rep_C_Pralidoxime_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124951834-1876795 12G04_rep_C_Pralidoxime_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_78.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153846755-1577606 Batch6_OVCAR8_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2F07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHK02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170207_013EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c6/c47512a20377e8a34e20d6651c8b5f/input_file/MMW6_20170207_013EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150456828-1924429 1_D8_RGT2_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150456828-1924429 1_D8_RGT2_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153013787-1577189 Batch3_MGHU3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094559/updates/2024-11-22_apatan_044a6e50/raw/08132024/AP_659.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw_Baseline_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153115203-1577235 Batch3_SKMES1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150428619-1864802 02B09_rep_C_Acetylsalicylsalicylic acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150428619-1864802 02B09_rep_C_Acetylsalicylsalicylic acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113208568-1922325 1_B11_IZH2_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113208568-1922325 1_B11_IZH2_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007485_031618-Unst1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_193.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_B5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223313212-1870070 01A07_rep_B_Isoflupredone acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223313212-1870070 01A07_rep_B_Isoflupredone acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case153_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case153_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091844234-1878562 13D06_rep_D_Fluvoxamine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091844234-1878562 13D06_rep_D_Fluvoxamine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S83.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S83.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153041726-1577209 Batch3_BTFC905_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123027584-1867702 05D02_rep_B_Chlorthalidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123027584-1867702 05D02_rep_B_Chlorthalidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114300046-1922896 4_H5_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114300046-1922896 4_H5_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pstA_#2_P4C4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (pstA_#2_P4C4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125931644-1863209 04A08_rep_A_Albendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125931644-1863209 04A08_rep_A_Albendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/cal_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F21_id_MSn_negative.mzML at line 21
index 328 is out of bounds for axis 0 with size 328
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112237539-1873599 10G10_rep_D_Drofenine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112237539-1873599 10G10_rep_D_Drofenine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145820524-1864036 02F03_rep_A_Loxapine succinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145820524-1864036 02F03_rep_A_Loxapine succinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/564-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C4_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_H6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152103333-1867983 05D08_rep_C_Amoxicillinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152103333-1867983 05D08_rep_C_Amoxicillinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uidB_P3C9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (uidB_P3C9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNS606_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ppiscicida/WithKBr/140225A2.mzXML at line 689
Premature end of data in tag peaks line 45, line 48, column 259604 (140225A2.mzXML, line 48)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125408001-1876988 12H08_rep_D_Deoxycorticosteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125408001-1876988 12H08_rep_D_Deoxycorticosteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B08P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_346.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151952730-1576683 Batch1_BT549_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD1_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_E6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_58.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD6_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD6_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GE9_01_16840.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112312691-1921897 3_D4_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112312691-1921897 3_D4_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121345767-1879439 15G08_rep_A_Docetaxelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121345767-1879439 15G08_rep_A_Docetaxelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122443736-1879938 15A03_rep_C_Anastrozolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122443736-1879938 15A03_rep_C_Anastrozolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_med (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111507643-1871515 10E11_rep_B_Isopropamide_iodidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111507643-1871515 10E11_rep_B_Isopropamide_iodidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C5_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_21_2022_1003_Michael_leming_liver_neg-0.0045.mzML at line 689
Premature end of data in tag binary line 15138, line 15138, column 1258102 (3_21_2022_1003_Michael_leming_liver_neg-0.0045.mzML, line 15138)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/462-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_151.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201310429-1877862 09A07_rep_B_Oxiconazole_Nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201310429-1877862 09A07_rep_B_Oxiconazole_Nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNS606_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_29_AC+_54.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C12_id_MSn_positive.mzML at line 21
index 519 is out of bounds for axis 0 with size 519
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G15_id_MSn_positive.mzML at line 21
index 425 is out of bounds for axis 0 with size 425
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007690_032218-5CRP1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5E02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-178_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153039040-1577207 Batch3_NCIH661_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_C13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A19_id_MSn_negative_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180428_ES_H3K_batch3_repB_38.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124605890-1862556 03G08_rep_B_Clemizole_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124605890-1862556 03G08_rep_B_Clemizole_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101517333-1869496 07H07_rep_C_Mirtazapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101517333-1869496 07H07_rep_C_Mirtazapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100503693-1869006 06F05_rep_D_Linezolidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100503693-1869006 06F05_rep_D_Linezolidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murG_#3_P5D8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (murG_#3_P5D8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C4_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150809672-1924595 2_F2_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150809672-1924595 2_F2_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/094_84.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125247393-1862877 03C06_rep_C_Aztreonamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125247393-1862877 03C06_rep_C_Aztreonamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087689/raw/Hela_bulk/OR11_20160122_PG_HeLa_CVB3_CT_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_Batch03_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_QC_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET51.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET51.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_H3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB1B11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153909442-1577625 Batch6_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_120_3A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_D11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-meoh.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007575_031718-5CRP4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151905386-1576644 Batch7_NCIH1993_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150925041-1865032 02B10_rep_D_Mianserine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150925041-1865032 02B10_rep_D_Mianserine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I8_id_MSn_negative.mzML at line 21
index 351 is out of bounds for axis 0 with size 351
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNY243_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1109.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_C3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122146724-1879803 15C04_rep_C_Cefdinirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122146724-1879803 15C04_rep_C_Cefdinirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B12_id_MSn_positive.mzML at line 21
index 468 is out of bounds for axis 0 with size 468
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2F03P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mhpT_P3H6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (mhpT_P3H6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A23_id.mzML at line 21
index 648 is out of bounds for axis 0 with size 648
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_A2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8D07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_rerun_B1_BB1_01_12035.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122351432-1867386 04B04_rep_D_Norethindronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122351432-1867386 04B04_rep_D_Norethindronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M24_id_negative.mzML at line 21
index 242 is out of bounds for axis 0 with size 242
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124257035-1876506 08A11_rep_D_Nicotinamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124257035-1876506 08A11_rep_D_Nicotinamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122800964-1875791 08H06_rep_A_Aceclidine_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122800964-1875791 08H06_rep_A_Aceclidine_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123936852-1876346 08C04_rep_D_Papaverine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123936852-1876346 08C04_rep_D_Papaverine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD3_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person25_blood_elder_POS.mzXML at line 689
attributes construct error, line 41, column 83 (Person25_blood_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093316/ccms_parameters/params.xml at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_E4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152037355-1576718 Batch1_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009512_20190714042542_IBD200_E10_B8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/adk_P4B3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (adk_P4B3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_39_CNR_48.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_39_CNR_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/old/SCSS_4 REPS POS_NEG_COMPLETE/SCSS_4 REPS POS_NEG_COMPLETE/SC_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/old/SCSS_4 REPS POS_NEG_COMPLETE/SCSS_4 REPS POS_NEG_COMPLETE/SC_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092913573-1879053 14B06_rep_C_Piperidolate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092913573-1879053 14B06_rep_C_Piperidolate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201232619-1877834 09G06_rep_B_Methyl_benzethonium_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201232619-1877834 09G06_rep_B_Methyl_benzethonium_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150546979-1864863 02C02_rep_C_R(-) Apomorphine hydrochloride hemihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150546979-1864863 02C02_rep_C_R(-) Apomorphine hydrochloride hemihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_49.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223805419-2227640 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S45.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S45.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_15102101_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_G8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R331_5h3a.mzML at line 689
Specification mandates value for attribute unitNgT, line 62865, column 139 (pBlichMO17R331_5h3a.mzML, line 62865)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150340380-1924365 1_A1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150340380-1924365 1_A1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121832445-1867131 04D06_rep_C_Fenofibrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121832445-1867131 04D06_rep_C_Fenofibrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L12_id_MSn_negative.mzML at line 21
index 354 is out of bounds for axis 0 with size 354
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125319566-1862903 03D06_rep_C_Asenapine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125319566-1862903 03D06_rep_C_Asenapine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N23_id_negative.mzML at line 21
index 243 is out of bounds for axis 0 with size 243
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223910418-2227696 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D4_id_MSn_positive.mzML at line 21
index 573 is out of bounds for axis 0 with size 573
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysH_P5G11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (cysH_P5G11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152953614-1577173 Batch3_MIAPACA2_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28022021_Batch02_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S35.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S35.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202029855-1878190 09G06_rep_D_Methyl_benzethonium_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202029855-1878190 09G06_rep_D_Methyl_benzethonium_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152255069-1576827 Batch2_BT20_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/865.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/407.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_G_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_E1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_G8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112457921-1921989 3_F9_GPR1_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112457921-1921989 3_F9_GPR1_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/010_10uMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112713754-1922108 4_D2_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112713754-1922108 4_D2_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A9Pa10mm_black_P1-B-8_01_23072.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gsiD_#2_P5E11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (gsiD_#2_P5E11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yiaN_P3C4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (yiaN_P3C4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample217.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_J10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/CPV_B_rep_3_B-B9_1_5838.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007667_032118-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152718580-1577042 Batch2_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/avtA_#1_P4H9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (avtA_#1_P4H9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_63.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R13h3a.mzML at line 689
Opening and ending tag mismatch: binary line 158974 and scanWindow, line 158975, column 30 (pBlichMO17R13h3a.mzML, line 158975)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8F11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124702721-1862601 03D05_rep_B_Nimesulideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124702721-1862601 03D05_rep_B_Nimesulideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_QC4.mzXML at line 689
Premature end of data in tag peaks line 15282, line 15286, column 19948 (L_QC4.mzXML, line 15286)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201515849-1881952 16A03_rep_C_Silodosinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201515849-1881952 16A03_rep_C_Silodosinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C4_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_G6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M18_id_MSn_negative.mzML at line 21
index 295 is out of bounds for axis 0 with size 295
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OAW4.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/znuC_#2_P4F5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (znuC_#2_P4F5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB6A01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/146-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C3_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2F04P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_72.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100901528-1869197 07C05_rep_A_Etifenina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100901528-1869197 07C05_rep_A_Etifenina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G11_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151628869-1576514 Batch7_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153205066-1577275 Batch4_NCIH1869_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123105050-1867730 05A10_rep_B_Tacrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123105050-1867730 05A10_rep_B_Tacrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092946049-1879079 14G09_rep_C_Mephenytoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092946049-1879079 14G09_rep_C_Mephenytoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/805.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125007766-1862749 03G01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125007766-1862749 03G01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202142626-1878247 09E09_rep_D_Estropipateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202142626-1878247 09E09_rep_D_Estropipateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/crr_P4E5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (crr_P4E5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample077_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124057860-1876410 08E01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124057860-1876410 08E01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007483_031618-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated8hC3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated8hC3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201555542-1881980 16A02_rep_C_Nelfinavir_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201555542-1881980 16A02_rep_C_Nelfinavir_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153301886-1577321 Batch4_NCIH2009_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhmD_P4D3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (rhmD_P4D3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C5_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202505087-1878407 10H04_rep_A_Cloperastine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202505087-1878407 10H04_rep_A_Cloperastine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100344173-1868943 06G11_rep_D_Ceforanidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100344173-1868943 06G11_rep_D_Ceforanidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_030EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/db/b6330466ec147877b93add2dca7aa2/input_file/QC_20170209_030EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30169 - GI-18-779.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150812053-1924597 2_C7_RGT2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150812053-1924597 2_C7_RGT2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122923156-1867653 05G09_rep_B_Dequalinium_dichlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122923156-1867653 05G09_rep_B_Dequalinium_dichlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113554769-1874574 11B11_rep_C_Aminophyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113554769-1874574 11B11_rep_C_Aminophyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiK_#1_P4C12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (thiK_#1_P4C12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150728870-1924560 2_A2_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150728870-1924560 2_A2_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121837194-1879660 15C06_rep_B_Celecoxiba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121837194-1879660 15C06_rep_B_Celecoxiba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_N14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151510385-1576449 Batch7_CORL88_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200623272-1881557 16E03_rep_A_Anagrelidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200623272-1881557 16E03_rep_A_Anagrelidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091220/peak/TYSZL36.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_phospho_HFD31_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ6_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ4_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B16_id_MSn_negative.mzML at line 21
index 299 is out of bounds for axis 0 with size 299
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092744/ccms_peak/WT_veh_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000088054/ccms_peak/Cohort_2/Cohort_2_Plate_92_85.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col2_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153253955-1868529 06E11_rep_B_Dicloxacillin_sodium_salt_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153253955-1868529 06E11_rep_B_Dicloxacillin_sodium_salt_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093230529-1879205 14G02_rep_C_Perindoprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093230529-1879205 14G02_rep_C_Perindoprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092759238-1878994 14E11_rep_B_Homosalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092759238-1878994 14E11_rep_B_Homosalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike3_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/381.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152953614-1577173 Batch3_MIAPACA2_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hybB_P3B10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (hybB_P3B10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc009_pos.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc009_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/629.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150913348-1865023 02D07_rep_D_Naltrexone hydrochloride dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150913348-1865023 02D07_rep_D_Naltrexone hydrochloride dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_E5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8H12_160605165013.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/brnQ_P3A8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (brnQ_P3A8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151148252-1576281 Batch5_LUDLU1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_63_AC+_40.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165901779-2227566 Healthy2.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121508533-1879501 15G09_rep_A_Cilnidipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121508533-1879501 15G09_rep_A_Cilnidipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124121390-1876429 08G09_rep_D_Benazepril_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124121390-1876429 08G09_rep_D_Benazepril_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C1_id.mzML at line 21
index 579 is out of bounds for axis 0 with size 579
Error processing file: /data/datasets/server/MassIVE/MSV000083395/peak/mzML/Fecal1_SPE_95H2O-5MeOH.mzML at line 689
AttValue: ' expected, line 370736, column 52 (Fecal1_SPE_95H2O-5MeOH.mzML, line 370736)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/NEC1_30EV_RA7_01_22604.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_104.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB4G02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lptD_P4G5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (lptD_P4G5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_C5_id_positive.mzML at line 21
index 276 is out of bounds for axis 0 with size 276
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A22_id_MSn_negative.mzML at line 21
index 222 is out of bounds for axis 0 with size 222
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_6_Dorsal_skin_HO_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_6_Dorsal_skin_HO_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153548849-1577457 Batch5_HCT15_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125418825-1876996 12F02_rep_D_Propofolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125418825-1876996 12F02_rep_D_Propofolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_70_NOR_50.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_70_NOR_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Bosea_sp__LYD011.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folA_P4F7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (folA_P4F7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A6_id_MSn_positive.mzML at line 21
index 672 is out of bounds for axis 0 with size 672
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_69_NOR_15.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_69_NOR_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093231787-1879206 14D10_rep_C_Methicillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093231787-1879206 14D10_rep_C_Methicillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/315.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224355129-1870566 01G08_rep_D_Miconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224355129-1870566 01G08_rep_D_Miconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_C7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124437388-1862370 03B09_rep_A_Mephenesinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124437388-1862370 03B09_rep_A_Mephenesinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pMIBSDR13h2a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202444501-1878391 10C02_rep_A_Nadideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202444501-1878391 10C02_rep_A_Nadideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yrfG_P3C6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (yrfG_P3C6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111737979-1921609 1_H3_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111737979-1921609 1_H3_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STY2_MS_RA4_01_22500.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case221_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case221_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Naringenin_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4C01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_89.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151044633-1865094 02A08_rep_D_Diazoxidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151044633-1865094 02A08_rep_D_Diazoxidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120951463-1879264 14E05_rep_D_Levalbuterol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120951463-1879264 14E05_rep_D_Levalbuterol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_91.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P16_id_negative.mzML at line 21
index 247 is out of bounds for axis 0 with size 247
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ompG_P5A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (ompG_P5A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180411_ES_H3K_batch7_repA_85.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_QC_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152948085-1868388 06B03_rep_A_Amifostinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152948085-1868388 06B03_rep_A_Amifostinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_G11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_149.mzXML at line 689
Premature end of data in tag peaks line 23567, line 23571, column 15939 (20121114_149.mzXML, line 23571)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152603434-1868213 05F11_rep_D_Clebopride_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152603434-1868213 05F11_rep_D_Clebopride_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person1_RBC_NEG.mzXML at line 689
attributes construct error, line 38, column 71 (Person1_RBC_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170127_057ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ce/345cb242b20c33c0cf24a2256ca9f7/input_file/SH8_20170127_057ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125244955-1862875 03D03_rep_C_Thalidomideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125244955-1862875 03D03_rep_C_Thalidomideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1E12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_125.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D13_id_MSn_positive.mzML at line 21
index 726 is out of bounds for axis 0 with size 726
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151949612-1867923 05E08_rep_C_Benfluorexb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151949612-1867923 05E08_rep_C_Benfluorexb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153853863-1577612 Batch6_NCIH1299_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD4_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124735371-1862627 03C11_rep_B_Tolbutamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124735371-1862627 03C11_rep_B_Tolbutamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222758068-1869833 01A11_rep_A_Sulfaguanidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222758068-1869833 01A11_rep_A_Sulfaguanidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OW2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092435/raw/Group_I_mzML/I61.mzML at line 689
Invalid character: Char 0x0 out of allowed range
, line 76, column 1 (I61.mzML, line 76)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glnQ_P4C5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (glnQ_P4C5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_05_leg_muscle_RESV_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_05_leg_muscle_RESV_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3D08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100642085-1869085 07H06_rep_A_Nifuroxazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100642085-1869085 07H06_rep_A_Nifuroxazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8E08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alr_#1_P4G9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (alr_#1_P4G9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_3_RESV_20uM_NEG.mzXML at line 689
attributes construct error, line 38, column 82 (HepG2_3_RESV_20uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/otsA_P3C11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (otsA_P3C11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/269.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argD_#3_P5F12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (argD_#3_P5F12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample012_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET126.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET126.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150249990-1864727 02D08_rep_B_Chlorpheniramine maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150249990-1864727 02D08_rep_B_Chlorpheniramine maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121348486-1866911 04B06_rep_B_Niflumic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121348486-1866911 04B06_rep_B_Niflumic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112817691-1922165 4_H7_GPR1_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112817691-1922165 4_H7_GPR1_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J3_id_MSn_positive.mzML at line 21
index 474 is out of bounds for axis 0 with size 474
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078784/ccms_peak/Ecoliexpression/pACR08/withcoumaricacidandKBr/140311noTaddedC.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1365.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1365.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET128.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET128.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/777.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30234 - GI-17-445.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LIM1_MS_RA6_01_22672.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152737895-1577058 Batch1_NCIH1299_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_M3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L80cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L80cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152615432-1576989 Batch1_CALU6_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ribB_P3F10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (ribB_P3F10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113248248-1874462 11H09_rep_B_Ioversola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113248248-1874462 11H09_rep_B_Ioversola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009515_IBD200_E10_A11.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130059489-1863281 04G02_rep_A_Lisinoprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130059489-1863281 04G02_rep_A_Lisinoprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_53_RIN_48.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_53_RIN_48.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/raw/raw/MTBLS661/isatab file/MTBLS3/Cecilia_AA_rerun16.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000082781/raw/raw/MTBLS661/isatab file/MTBLS3/Cecilia_AA_rerun16.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_217.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/csn_codA_P3H3_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 634, column 10011250 (csn_codA_P3H3_Aquity_pos.mzXML, line 634)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091903011-1878577 13B02_rep_D_Remoxipride_Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091903011-1878577 13B02_rep_D_Remoxipride_Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152143112-1576770 Batch2_BT20_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122050450-1867240 04G01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122050450-1867240 04G01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K12_id_MSn_negative.mzML at line 21
index 322 is out of bounds for axis 0 with size 322
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sufB_P3G8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (sufB_P3G8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125842998-1877199 13B01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125842998-1877199 13B01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_D7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_66.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112419498-1921956 3_D10_GPR1_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112419498-1921956 3_D10_GPR1_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151150642-1576283 Batch5_LUDLU1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std c 100a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8D02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111618991-1921541 1_E1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111618991-1921541 1_E1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091812316-1878536 13F04_rep_D_Deptropine_citratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091812316-1878536 13F04_rep_D_Deptropine_citratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151803146-1576592 Batch4_HS578T_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case93_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case93_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/216-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223927134-2227711 Healthy2.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112455666-1921987 3_G2_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112455666-1921987 3_G2_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130044337-1863268 04G08_rep_A_Oxytetracycline_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130044337-1863268 04G08_rep_A_Oxytetracycline_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111811733-1921638 2_B10_GAP1_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111811733-1921638 2_B10_GAP1_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132912157-1733893 1pool Skin 2 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075114.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD5_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_33.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112656251-1922093 4_H5_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112656251-1922093 4_H5_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165742442-2227493 PAT35.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_E3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C9_id_negative.mzML at line 21
index 278 is out of bounds for axis 0 with size 278
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_F6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_H4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152950116-1577170 Batch3_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/ccms_peak/ZZ_Primary_metabolites/Corn_AW1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM4AG010.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100837702-1869178 07B01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100837702-1869178 07B01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095328/peak/MS_RAW_data/230811_BBT301_control_TPP_HighPH_6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_E9_id_positive.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122005416-1867204 04E07_rep_C_Perhexiline_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122005416-1867204 04E07_rep_C_Perhexiline_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125918736-1863198 04G09_rep_A_Pimozidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125918736-1863198 04G09_rep_A_Pimozidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OW5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/puuB_P3A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (puuB_P3A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202035117-1882196 16B03_rep_D_Ezetimibeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202035117-1882196 16B03_rep_D_Ezetimibeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113304543-1874475 11B05_rep_B_Cefsulodin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113304543-1874475 11B05_rep_B_Cefsulodin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151357717-1576389 Batch6_CALU3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E10_id_MSn_negative.mzML at line 21
index 341 is out of bounds for axis 0 with size 341
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3E13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNT371_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/20221212_carryover_test_noISTD_PLASMA_sample08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153026397-1577198 Batch3_BTFC905_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_B8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/044_48.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113001447-1874336 11H04_rep_B_Theophylline_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113001447-1874336 11H04_rep_B_Theophylline_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S05_dilute_190201002509.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125721677-1863100 03B09_rep_D_Mephenesina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125721677-1863100 03B09_rep_D_Mephenesina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30107 - GI-14-450.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ6_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sdaC_P3C5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (sdaC_P3C5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_66.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112943586-1874322 11H03_rep_A_Iopromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112943586-1874322 11H03_rep_A_Iopromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_104.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/918.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121620282-1867027 04H07_rep_B_Glibenclamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121620282-1867027 04H07_rep_B_Glibenclamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150047731-1864152 02E09_rep_B_Spironolactoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150047731-1864152 02E09_rep_B_Spironolactoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C21_id_MSn_positive.mzML at line 21
index 624 is out of bounds for axis 0 with size 624
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K17_id_MSn_positive.mzML at line 21
index 567 is out of bounds for axis 0 with size 567
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6G07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD2_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/598.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yrfG_P3C6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (yrfG_P3C6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170125_016EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ad/2bcc4701f2ac476120f19abd14c350/input_file/SH8_20170125_016EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4C06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1144.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_25.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_25.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151554285-1924989 4_E9_SNF3_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151554285-1924989 4_E9_SNF3_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ispF_#3_P3E11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (ispF_#3_P3E11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007571_031718-5CRP3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092744/ccms_peak/WT_veh_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cdd_#5_P5F12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (cdd_#5_P5F12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112150794-1873562 10E01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112150794-1873562 10E01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150850152-1865005 02E06_rep_D_Perphenazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150850152-1865005 02E06_rep_D_Perphenazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/napB_P3F6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (napB_P3F6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I16_id_MSn_negative.mzML at line 21
index 356 is out of bounds for axis 0 with size 356
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124202943-1862247 03A06_rep_A_Ethosuximidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124202943-1862247 03A06_rep_A_Ethosuximidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-cc6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093149417-1879172 14B10_rep_C_Propoxycaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093149417-1879172 14B10_rep_C_Propoxycaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111506423-1871514 10E02_rep_B_Butambenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111506423-1871514 10E02_rep_B_Butambenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_low.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150756229-1864963 02H02_rep_D_Erythromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150756229-1864963 02H02_rep_D_Erythromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glcE_#2_P4C4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (glcE_#2_P4C4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_A5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153017919-1577192 Batch3_647V_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/849.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125035251-1862771 03G02_rep_C_Norfloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125035251-1862771 03G02_rep_C_Norfloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165701182-2227455 Healthy1.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dacB_P4F9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (dacB_P4F9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_70.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_135.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_135.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150446499-1864816 02D04_rep_C_Ciprofloxacin hydrochloride monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150446499-1864816 02D04_rep_C_Ciprofloxacin hydrochloride monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085357/peak/Peak_List_Files/Lipidomics_Samples/TAM_IMS_negvel_653_06Feb17_Lola-WCSH7905.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (TAM_IMS_negvel_653_06Feb17_Lola-WCSH7905.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/960.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD5_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I3_id_MSn_positive.mzML at line 21
index 658 is out of bounds for axis 0 with size 658
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_113b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124145175-1876448 08D06_rep_D_Exemestanea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124145175-1876448 08D06_rep_D_Exemestanea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_HT_048_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092438389-1878838 14C06_rep_B_Milrinonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092438389-1878838 14C06_rep_B_Milrinonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112354950-1921934 3_H7_GPR1_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112354950-1921934 3_H7_GPR1_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine68.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine68.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180625_ES_H3K_bacth8_repA_110.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_152.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_152.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hD2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hD2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113606965-1922532 2_E9_IZH2_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113606965-1922532 2_E9_IZH2_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152401705-1868120 05E01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152401705-1868120 05E01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153545950-1868665 06B02_rep_C_Androsteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153545950-1868665 06B02_rep_C_Androsteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sgbH_P3C6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (sgbH_P3C6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/moaC_P4G1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (moaC_P4G1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202143988-1878248 09C03_rep_D_D,L-Penicillaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202143988-1878248 09C03_rep_D_D,L-Penicillaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mepA_P5H9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (mepA_P5H9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075394.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202347307-1878346 10E05_rep_A_Furaltadone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202347307-1878346 10E05_rep_A_Furaltadone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S59.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S59.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gnd_P3D12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (gnd_P3D12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample167_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130855933-1877676 13A02_rep_C_Denatonium_benzoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130855933-1877676 13A02_rep_C_Denatonium_benzoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202145658-1882251 16C11_rep_D_Azatadine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202145658-1882251 16C11_rep_D_Azatadine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170209_020ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/0f/9d4646be73f95a7e3a774704beef90/input_file/SH8_20170209_020ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_53.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpE_P4F11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (glpE_P4F11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/030_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case238_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case238_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_E4_id_positive.mzML at line 21
index 384 is out of bounds for axis 0 with size 384
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152734340-1577055 Batch2_NCIH838_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroD_#1_P5D7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (aroD_#1_P5D7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083383/updates/2019-10-30_allegraaron_e0b9cac9/other/allegraaron/Samples/raw/S_YBT-2_Zn.mzML at line 689
Premature end of data in tag index line 348485, line 348486, column 1 (S_YBT-2_Zn.mzML, line 348486)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNB091_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_1_B_rep_2_B-A3_1_5507.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/352.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlB1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlB1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/chbA_P3G6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (chbA_P3G6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125642453-1877106 12H11_rep_D_Aminocaproic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125642453-1877106 12H11_rep_D_Aminocaproic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_80.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_80.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1095-B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150448449-1924422 1_C9_RGT2_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150448449-1924422 1_C9_RGT2_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101809927-1869636 07A06_rep_D_Cefaclor_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101809927-1869636 07A06_rep_D_Cefaclor_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121747778-1867096 04B03_rep_C_Diphenidol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121747778-1867096 04B03_rep_C_Diphenidol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152749867-1577068 Batch2_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_G11_id_negative.mzML at line 21
index 238 is out of bounds for axis 0 with size 238
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_B_pos_IMS1_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M4_id_MSn_positive.mzML at line 21
index 583 is out of bounds for axis 0 with size 583
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/preA_P3G6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (preA_P3G6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-099_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112848639-1922193 4_A4_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112848639-1922193 4_A4_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_E11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/316.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151957956-1576687 Batch1_NCIH2073_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1558.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1558.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114128639-1922814 4_A1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114128639-1922814 4_A1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28022021_Batch02_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_84.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153332680-1577346 Batch4_CAKI1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112601244-1874147 11F07_rep_A_Tolmetin_sodium_salt_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112601244-1874147 11F07_rep_A_Tolmetin_sodium_salt_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pntB_#3_P4G2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (pntB_#3_P4G2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130010236-1863241 04H09_rep_A_Quinacrine_dihydrochloride_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130010236-1863241 04H09_rep_A_Quinacrine_dihydrochloride_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_C5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152638099-1577008 Batch1_7860_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M10_id.mzML at line 21
index 538 is out of bounds for axis 0 with size 538
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201407880-1881902 16C04_rep_B_1,8-Dihydroxyanthraquinoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201407880-1881902 16C04_rep_B_1,8-Dihydroxyanthraquinoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_sample07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00073378.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES115.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122734166-1867566 05F02_rep_A_Ketotifen_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122734166-1867566 05F02_rep_A_Ketotifen_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123314886-1876040 08G10_rep_B_Aniracetama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123314886-1876040 08G10_rep_B_Aniracetama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090922/raw/mzML_Files_Tesis_Pablo_C/mzML_Files_40eV_Pos-Tesis_Pablo_C/QC_iterative5_40pos_34.mzML at line 689
Specification mandates value for attribute nAlJ9aQ8zZPPtnjyyDZPHt3hyec7PWU, line 83220, column 85 (QC_iterative5_40pos_34.mzML, line 83220)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J15_id_negative.mzML at line 21
index 247 is out of bounds for axis 0 with size 247
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153731987-1577543 Batch4_DU145_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_F6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ1_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_E11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD2_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097739/peak/C10_1 MSMS pos.mzML at line 640
'selectedIonList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_M15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4E12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_73.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_E4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hD3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hD3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/260.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111614392-1921537 1_C8_GAP1_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111614392-1921537 1_C8_GAP1_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD4_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153122911-1868458 06G05_rep_B_Quetiapine_hemifumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153122911-1868458 06G05_rep_B_Quetiapine_hemifumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/47-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw4_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample017.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111633842-1921554 1_E5_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111633842-1921554 1_E5_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_04_NOR_25.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_04_NOR_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_C11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007656_032118-1Thr3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_27.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_27.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152946562-1577167 Batch3_T24_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121833639-1867132 04E05_rep_C_Diethylcarbamazine_citratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121833639-1867132 04E05_rep_C_Diethylcarbamazine_citratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/186-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_G5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD4_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2E02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202159667-1882262 16B02_rep_D_Ipriflavoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202159667-1882262 16B02_rep_D_Ipriflavoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hcaB_P3B10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (hcaB_P3B10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125405309-1876986 12E10_rep_D_Ketorolac_tromethamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125405309-1876986 12E10_rep_D_Ketorolac_tromethamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD3_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_G21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114133030-1874846 11D01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114133030-1874846 11D01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153647205-1868715 06H10_rep_C_Racloprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153647205-1868715 06H10_rep_C_Racloprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112855286-1874285 11H04_rep_A_Theophylline_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112855286-1874285 11H04_rep_A_Theophylline_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GG1_01_16978.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_224.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acs_P4G4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (acs_P4G4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152733088-1577054 Batch2_NCIH838_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET57.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET57.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114439709-1874998 12G04_rep_A_Pralidoxime_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114439709-1874998 12G04_rep_A_Pralidoxime_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiH_P3C4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (thiH_P3C4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201154651-1881802 16C03_rep_B_Donepezil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201154651-1881802 16C03_rep_B_Donepezil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_G9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_216.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151712773-1576551 Batch7_UMC11_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101303422-1869390 07A07_rep_B_Colistin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101303422-1869390 07A07_rep_B_Colistin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_G1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151649901-1576532 Batch7_CAL51_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150852842-1865007 02C10_rep_D_Dizocilpine maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150852842-1865007 02C10_rep_D_Dizocilpine maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH43.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091425/updates/2023-03-07_lhenson_8bd22570/ccms_parameters/params.xml at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_19071524_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201218_LKM_no_EtOH_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113942228-1922720 3_A11_STE2_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113942228-1922720 3_A11_STE2_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113504452-1874534 11F03_rep_C_Nylidrina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113504452-1874534 11F03_rep_C_Nylidrina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_92.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_51_CNR_25.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_51_CNR_25.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GG7_01_16984.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086441/raw/1283.2_SWBi_EtOAc_GD3_01_2647.mzML at line 689
Premature end of data in tag binary line 100, line 100, column 579820 (1283.2_SWBi_EtOAc_GD3_01_2647.mzML, line 100)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/002_Soil_10mMExtra_1_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095328/peak/MS_RAW_data/230811_BBT301_control_TPP_HighPH_4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_64.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121409214-1879457 15G06_rep_A_Racepinephrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121409214-1879457 15G06_rep_A_Racepinephrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD2_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/181-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124811111-1862656 03A01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124811111-1862656 03A01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111421516-1921055 1_F3_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111421516-1921055 1_F3_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET81.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET81.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100723149-1869119 07H07_rep_A_Mirtazapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100723149-1869119 07H07_rep_A_Mirtazapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153748851-1577557 Batch6_HCC1806_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_B8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G14_id.mzML at line 21
index 604 is out of bounds for axis 0 with size 604
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_rerun_H5_01_11784.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122252139-1879853 15B02_rep_C_Acetylcysteineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122252139-1879853 15B02_rep_C_Acetylcysteineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_G7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152306490-1576836 Batch1_HX147_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115027099-1875271 12H08_rep_B_Deoxycorticosteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115027099-1875271 12H08_rep_B_Deoxycorticosteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD1_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145634694-1863950 02H03_rep_A_Chloroxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145634694-1863950 02H03_rep_A_Chloroxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/Blank12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_39_CNR_30.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_39_CNR_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007653_032118-1Thr2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150812794-1864976 02F10_rep_D_Cefotaxime sodium salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150812794-1864976 02F10_rep_D_Cefotaxime sodium salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151351692-1576384 Batch6_CALU1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_L7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNT302_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_E9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151103778-1865109 02B03_rep_D_Zimelidine dihydrochloride monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151103778-1865109 02B03_rep_D_Zimelidine dihydrochloride monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111532605-1921501 1_A11_GAP1_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111532605-1921501 1_A11_GAP1_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092621789-1878919 14E04_rep_B_Isosorbide_mononitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092621789-1878919 14E04_rep_B_Isosorbide_mononitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124923615-1876774 12A08_rep_C_Oxybenzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124923615-1876774 12A08_rep_C_Oxybenzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike5_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D10_id_MSn_negative.mzML at line 21
index 272 is out of bounds for axis 0 with size 272
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150338682-1864764 02C09_rep_C_Nomifensine maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150338682-1864764 02C09_rep_C_Nomifensine maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_D16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28022021_Batch02_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151646441-1576529 Batch7_CAL51_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/alaE_P4F1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (alaE_P4F1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD3_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHL26.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBacsR13h2a.mzML at line 689
Specification mandates value for attribute accessi, line 105773, column 39 (pBacsR13h2a.mzML, line 105773)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I24_id.mzML at line 21
index 554 is out of bounds for axis 0 with size 554
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_B1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_G3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210325_AD_34.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151937500-1867913 05D05_rep_C_Clopamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151937500-1867913 05D05_rep_C_Clopamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_08P_A7_id_negative.mzML at line 21
index 220 is out of bounds for axis 0 with size 220
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/70-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121534805-1879520 15H01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121534805-1879520 15H01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E14_id_MSn_negative.mzML at line 21
index 361 is out of bounds for axis 0 with size 361
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121449108-1879487 15B03_rep_A_Melengestrol_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121449108-1879487 15B03_rep_A_Melengestrol_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124431158-1862365 03H09_rep_A_Lomefloxacin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124431158-1862365 03H09_rep_A_Lomefloxacin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153320418-1577336 Batch5_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/407.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/056_58.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121440920-1879481 15G11_rep_A_Fosinoprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121440920-1879481 15G11_rep_A_Fosinoprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample221.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000085760/raw/mzXML/6221.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample202_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152012930-1867942 05A05_rep_C_Phenylpropanolamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152012930-1867942 05A05_rep_C_Phenylpropanolamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101556473-1869526 07A11_rep_C_Iobenguane_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101556473-1869526 07A11_rep_C_Iobenguane_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_56.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2E08P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3C05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101145062-1869327 07H07_rep_B_Mirtazapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101145062-1869327 07H07_rep_B_Mirtazapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122742721-1880077 15A06_rep_D_Fleroxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122742721-1880077 15A06_rep_D_Fleroxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151152287-1865147 02D06_rep_D_Haloperidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151152287-1865147 02D06_rep_D_Haloperidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/899-B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_A45M_pos_IMS1_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153542314-1868662 06E05_rep_C_Oxcarbazepinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153542314-1868662 06E05_rep_C_Oxcarbazepinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_92.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_92.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nhoA_P4E11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (nhoA_P4E11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151648715-1576531 Batch7_NCIH441_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100716829-1869114 07F01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100716829-1869114 07F01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GD3_01_17054.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/R48_II_ESI+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125553501-1863028 03B04_rep_D_Tranylcypromine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125553501-1863028 03B04_rep_D_Tranylcypromine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8C10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152449762-1576918 Batch2_IGROV1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Column2_test_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_A6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/004_Nitrate_Day2_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B12_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152944305-1868385 06B11_rep_A_Erlotinibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152944305-1868385 06B11_rep_A_Erlotinibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151906573-1576645 Batch7_NCIH1993_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0032_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5G01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1558.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1558.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152013161-1576699 Batch1_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yfcG_#2_P4G3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (yfcG_#2_P4G3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GF9_01_16972.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2A09P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007642_032118-0.01Thr6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dosP_P3G5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (dosP_P3G5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202210059-1882270 16E05_rep_D_Benzoxiquineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202210059-1882270 16E05_rep_D_Benzoxiquineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130542880-1877522 13A06_rep_C_Floxuridineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130542880-1877522 13A06_rep_C_Floxuridineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120954090-1879266 14H01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120954090-1879266 14H01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A7_id_MSn_positive.mzML at line 21
index 674 is out of bounds for axis 0 with size 674
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_53.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100724454-1869120 07H07_rep_A_Mirtazapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100724454-1869120 07H07_rep_A_Mirtazapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_22_Dorsal_skin_EtOH_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_22_Dorsal_skin_EtOH_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153453834-1577412 Batch4_NCIH810_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153404799-1577372 Batch3_KU1919_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152730693-1577052 Batch3_MDAMB157_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_L21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095143/peak/Samples/Plate7/Plate_7_D2_Sample_402097426.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152352613-1868113 05H07_rep_D_Etoposideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152352613-1868113 05H07_rep_D_Etoposideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/PED2_40EV_RA7_01_22531.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152922985-1577147 Batch3_HT1376_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152628571-1577000 Batch2_NCIH647_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_E10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201050732-1877760 09B05_rep_B_Benfotiaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201050732-1877760 09B05_rep_B_Benfotiaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D12_id_MSn_positive.mzML at line 21
index 710 is out of bounds for axis 0 with size 710
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/blank_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc046_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc046_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine60.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine60.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111510463-1871517 10H06_rep_B_Isocarboxazida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111510463-1871517 10H06_rep_B_Isocarboxazida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Acido_24295.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007491_031618-Unst3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074322.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4D08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_179.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ1_3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085122/peak/100.mzXML at line 255
Error -3 while decompressing data: invalid distance too far back
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/989.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/444.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_D3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person2_WBC_NEG.mzXML at line 689
attributes construct error, line 38, column 71 (Person2_WBC_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190124032338.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124836221-1876739 12E06_rep_C_Thonzonium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124836221-1876739 12E06_rep_C_Thonzonium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_sample07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145530735-1863899 02F08_rep_A_Clindamycin hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145530735-1863899 02F08_rep_A_Clindamycin hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180630_ES_H3K_bacth9_repA_129.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_A11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C7_id.mzML at line 21
index 592 is out of bounds for axis 0 with size 592
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087805/ccms_peak/Media_C3_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100557465-1869049 07E02_rep_A_Lofexidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100557465-1869049 07E02_rep_A_Lofexidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_63.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150339131-1924364 1_B11_RGT2_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150339131-1924364 1_B11_RGT2_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/eutC_P4H10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (eutC_P4H10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purD_P3H1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (purD_P3H1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Baicalein_nopro_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1419.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1419.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112631344-1874171 11G06_rep_A_Simvastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112631344-1874171 11G06_rep_A_Simvastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151246979-1924834 3_D10_SNF3_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151246979-1924834 3_D10_SNF3_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ6_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Microbacterium_BM6G004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E20_id_MSn_positive.mzML at line 21
index 666 is out of bounds for axis 0 with size 666
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151632455-1576517 Batch7_HCC38_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_G6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153701866-1868727 06G10_rep_C_Niridazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153701866-1868727 06G10_rep_C_Niridazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/005_Urea_Day11_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G10_id_MSn_positive.mzML at line 21
index 511 is out of bounds for axis 0 with size 511
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153744019-1577553 Batch6_MDAMB435S_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165920166-2227583 PAT50.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_31_RIN_50.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_31_RIN_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101956532-1869722 99b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101956532-1869722 99b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_A5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122859231-1867634 05C01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122859231-1867634 05C01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151525556-1576461 Batch7_CORL88_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125702078-1877121 13G07_rep_A_Arbutina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125702078-1877121 13G07_rep_A_Arbutina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GG10_01_17106.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122128096-1879789 15H11_rep_B_Hexachloropheneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122128096-1879789 15H11_rep_B_Hexachloropheneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/402.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD1_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_F9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121612391-1879549 15H02_rep_A_Imatinibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121612391-1879549 15H02_rep_A_Imatinibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cobC_#3_P4F8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (cobC_#3_P4F8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075940.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/174_135.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4T3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/4T3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114719768-1875120 12G07_rep_B_Altretaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114719768-1875120 12G07_rep_B_Altretaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample112.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/231.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ4_4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153228997-1577294 Batch5_SW620_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHK01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100553802-1869046 07E08_rep_A_Tenoxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100553802-1869046 07E08_rep_A_Tenoxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145550658-1863915 02H07_rep_A_Ivermectina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145550658-1863915 02H07_rep_A_Ivermectina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpTen3_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170125_052EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/7f/9a5d21cacda6ba35fa23cf5f83d8fb/input_file/SH9_20170125_052EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/selB_P4G5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (selB_P4G5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125313519-1862898 03A06_rep_C_Ethosuximidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125313519-1862898 03A06_rep_C_Ethosuximidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151234149-1576319 Batch5_NCIH446_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000096286/raw/Lang_Feimei_EV_4.mzML at line 689
Premature end of data in tag binary line 378119, line 378119, column 4648 (Lang_Feimei_EV_4.mzML, line 378119)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_E3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J9_id_MSn_positive.mzML at line 21
index 555 is out of bounds for axis 0 with size 555
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153344049-1577355 Batch5_NCIH1650_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8F05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H15_id_MSn_negative.mzML at line 21
index 347 is out of bounds for axis 0 with size 347
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample054_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078568/ccms_peak/GNPS_Dorrestein_Gerwick_Cyanobacteria/GNPS_Dorrestein_Gerwick_Cyanobacteria/Plate4/msgs.txt at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151456363-1576438 Batch6_NCIH1838_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/618.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153918861-1577633 Batch7_UO31_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD4_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_G7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case208_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case208_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170127_029ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/15/0d1932d5ca36228a203d3990c534a3/input_file/MMW3_20170127_029ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114003678-1922739 3_F4_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114003678-1922739 3_F4_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ygeX_#2_P5D6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (ygeX_#2_P5D6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_18072701_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_0123.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202113170-1878224 09D08_rep_D_Thiamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202113170-1878224 09D08_rep_D_Thiamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111957192-1872607 10H06_rep_C_Isocarboxazida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111957192-1872607 10H06_rep_C_Isocarboxazida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mrcA_#1_P4D1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (mrcA_#1_P4D1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093121190-1879149 14C05_rep_C_Meprylcaine_hydrochloride_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093121190-1879149 14C05_rep_C_Meprylcaine_hydrochloride_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092229730-1878738 14H02_rep_A_Mecamylamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092229730-1878738 14H02_rep_A_Mecamylamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-088_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V8_LH_PSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124401309-1876559 09B03_rep_A_Picrotoxininb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124401309-1876559 09B03_rep_A_Picrotoxininb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S114.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S114.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_A8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/963.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152943050-1577164 Batch5_NCIH2347_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121549887-1867003 04E09_rep_B_Spiperoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121549887-1867003 04E09_rep_B_Spiperoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_115_3C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092156405-1878711 14A11_rep_A_Quinethazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092156405-1878711 14A11_rep_A_Quinethazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130203713-1877351 13E07_rep_B_Darunavira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130203713-1877351 13E07_rep_B_Darunavira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/078_76.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d8_279_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 40241, column 1 (SysVirol_IFT001_1918_d8_279_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 40241)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152546387-1576965 Batch1_CALU6_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P13_id_MSn_positive.mzML at line 21
index 678 is out of bounds for axis 0 with size 678
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153439273-1577400 Batch4_184A1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114823035-1875170 12D01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114823035-1875170 12D01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_A6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201704569-1878033 09H01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201704569-1878033 09H01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yiaY_P4H5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (yiaY_P4H5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125617125-1863047 03H05_rep_D_Chlorphensin_carbamateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125617125-1863047 03H05_rep_D_Chlorphensin_carbamateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8G08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cpdB_P3E7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (cpdB_P3E7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/41.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124816000-1862660 03B03_rep_B_Etofyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124816000-1862660 03B03_rep_B_Etofyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR324h1a.mzML at line 689
Opening and ending tag mismatch: binaryDataArray line 281952 and binary, line 281953, column 12558 (pBpumR324h1a.mzML, line 281953)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152205213-1868032 05A03_rep_D_Alfuzosin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152205213-1868032 05A03_rep_D_Alfuzosin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F19_id_negative.mzML at line 21
index 268 is out of bounds for axis 0 with size 268
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xdhC_P3C7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (xdhC_P3C7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ddpB_P3D5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (ddpB_P3D5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125315838-1862900 03E05_rep_C_Flumequinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125315838-1862900 03E05_rep_C_Flumequinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210119_LKM_yeast_nBut_5to1_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNP082_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111525929-1921495 1_F5_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111525929-1921495 1_F5_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114137533-1922822 4_C9_STE2_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114137533-1922822 4_C9_STE2_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_32_AC+_50.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/637.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpD_#1_P4B5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (glpD_#1_P4B5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD120_P1-F-4_03_2613.mzML at line 88
Invalid base64-encoded string: number of data characters (3351285) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_A10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample064_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153259173-1868533 06A02_rep_B_Testosterone_propionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153259173-1868533 06A02_rep_B_Testosterone_propionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD2_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GA10_01_16937.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7F05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121820887-1867122 04G09_rep_C_Pimozidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121820887-1867122 04G09_rep_C_Pimozidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B2_id.mzML at line 21
index 511 is out of bounds for axis 0 with size 511
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/182-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152640566-1577010 Batch2_NCIH838_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121638121-1879569 15A07_rep_A_Clavulanate_potassium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121638121-1879569 15A07_rep_A_Clavulanate_potassium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD6_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151903419-1867886 05F10_rep_C_Nefazodone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151903419-1867886 05F10_rep_C_Nefazodone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_101.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_101.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152007859-1867938 05E11_rep_C_Benzbromaronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152007859-1867938 05E11_rep_C_Benzbromaronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/asnA_P3E8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (asnA_P3E8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_N13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_29.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/203-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/29_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125549645-1863025 03E10_rep_D_Metoclopramide_monohydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125549645-1863025 03E10_rep_D_Metoclopramide_monohydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114350631-1922941 4_F4_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114350631-1922941 4_F4_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case34_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case34_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1348.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1348.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potI_P3D3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (potI_P3D3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/611.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1875.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1875.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12C13_Replicate3_Level1_MSMS_pos.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S2cells_2_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123021744-1867698 05E11_rep_B_Benzbromaronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123021744-1867698 05E11_rep_B_Benzbromaronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control38_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control38_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112127783-1873544 10C07_rep_C_Glycopyrrolateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112127783-1873544 10C07_rep_C_Glycopyrrolateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N14_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_J15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_82.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_15_RIN_47.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_15_RIN_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2G12_160527083939.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/napG_P3B7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (napG_P3B7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/006_Ammonia_Day17_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET67.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET67.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/DEX-plasma-S7.mzML at line 689
Premature end of data in tag indexedmzML line 2, line 162, column 1 (DEX-plasma-S7.mzML, line 162)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121020571-1879286 14A07_rep_D_Repaglinidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121020571-1879286 14A07_rep_D_Repaglinidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086335/raw/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Brancos/MeOH_14072.mzML at line 689
Extra content at the end of the document, line 46906, column 1 (MeOH_14072.mzML, line 46906)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112259565-1873617 10E05_rep_D_Furaltadone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112259565-1873617 10E05_rep_D_Furaltadone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007629_032118-0.01Thr1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_C5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152702955-1868259 06F02_rep_A_Alizapride_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152702955-1868259 06F02_rep_A_Alizapride_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C16_id_MSn_positive.mzML at line 21
index 694 is out of bounds for axis 0 with size 694
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_P7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112324642-1873637 10B07_rep_D_Cefazolin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112324642-1873637 10B07_rep_D_Cefazolin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111907722-1872568 10E11_rep_C_Isopropamide_iodideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111907722-1872568 10E11_rep_C_Isopropamide_iodideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114044714-1922775 3_H4_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114044714-1922775 3_H4_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-8-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_13_P4A1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024901 (ctrl_13_P4A1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_0124_190124231858.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121426307-1879470 15G07_rep_A_Montelukasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121426307-1879470 15G07_rep_A_Montelukasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample4n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113709731-1922586 2_D5_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113709731-1922586 2_D5_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124322205-1862310 03H11_rep_A_Proglumideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124322205-1862310 03H11_rep_A_Proglumideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_L3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201941134-1882154 16A01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201941134-1882154 16A01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009617_IBD200_E1_B8.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case241_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case241_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112718296-1874208 11C01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112718296-1874208 11C01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101609206-1869536 07E11_rep_C_Troloxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101609206-1869536 07E11_rep_C_Troloxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170209_065ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/29/92a4b3b88f7cad2d895800125c7d7d/input_file/MMW3_20170209_065ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114420926-1922968 4_A11_STE2_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114420926-1922968 4_A11_STE2_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ7_7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009573_IBD200_E14_A3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G20_id_MSn_positive.mzML at line 21
index 688 is out of bounds for axis 0 with size 688
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114247831-1922885 4_A4_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114247831-1922885 4_A4_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130037927-1877285 13C10_rep_A_Chlormadinone_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130037927-1877285 13C10_rep_A_Chlormadinone_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgi_#1_P6E4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (pgi_#1_P6E4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nupG_P4C12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (nupG_P4C12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125101371-1876847 12C11_rep_C_Nisoxetine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125101371-1876847 12C11_rep_C_Nisoxetine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170127_035ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/1e/fa6e2e4de6ed9fc7c3bfa00f42e790/input_file/MMW4_20170127_035ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_16061440_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_57.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_5_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153641116-1868710 06C03_rep_C_Zotepinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153641116-1868710 06C03_rep_C_Zotepinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GG2_01_17221.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122324779-1879878 15E01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122324779-1879878 15E01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093019762-1879104 14G11_rep_C_Parbendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093019762-1879104 14G11_rep_C_Parbendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_A5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/863.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_107a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/garL_P4B8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (garL_P4B8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113255033-1922365 1_E5_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113255033-1922365 1_E5_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_4_P_rep_1_B-C2_1_5525.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHJ04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_C6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ3_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_126b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1D04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_67.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113348181-1922412 2_B7_IZH2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113348181-1922412 2_B7_IZH2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4C07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/ccms_peak/Raw_Spectrum_Files/ALZ_FCX_P_E3E3_C_02Feb18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_A7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_B8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_H20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_381.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1052.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG003B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_3_B_rep_1_B-B1_1_5642.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113319481-1922386 1_F11_IZH2_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113319481-1922386 1_F11_IZH2_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201821293-1878091 09G01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201821293-1878091 09G01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123253755-1876023 08H09_rep_B_Dexfenfluramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123253755-1876023 08H09_rep_B_Dexfenfluramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E3_id_MSn_negative.mzML at line 21
index 339 is out of bounds for axis 0 with size 339
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122935295-1875865 08C09_rep_A_Galanthamine_hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122935295-1875865 08C09_rep_A_Galanthamine_hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201955321-1878163 09G08_rep_D_Diphenylpyraline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201955321-1878163 09G08_rep_D_Diphenylpyraline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgaC_P4C4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (pgaC_P4C4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121213872-1879371 14F10_rep_D_Nialamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121213872-1879371 14F10_rep_D_Nialamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD2_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD4_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR37_5h1b.mzML at line 689
Opening and ending tag mismatch: binary line 251596 and scanWindow, line 251597, column 30 (pBpumR37_5h1b.mzML, line 251597)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122338800-1867376 04E11_rep_D_Sulfinpyrazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122338800-1867376 04E11_rep_D_Sulfinpyrazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phoA_P4H8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (phoA_P4H8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123019100-1875899 08G01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123019100-1875899 08G01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L4_id_MSn_negative.mzML at line 21
index 370 is out of bounds for axis 0 with size 370
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1013.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201659275-1878029 09H04_rep_C_Dipyroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201659275-1878029 09H04_rep_C_Dipyroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6F03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121553340-1879534 15G04_rep_A_Gemcitabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121553340-1879534 15G04_rep_A_Gemcitabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/atpC_#4_P3C12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (atpC_#4_P3C12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123637514-1876203 08E01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123637514-1876203 08E01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124501529-1862389 03G02_rep_A_Norfloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124501529-1862389 03G02_rep_A_Norfloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_131_1B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aaeA_#1_P4C4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (aaeA_#1_P4C4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_115_2C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151811455-1576599 Batch7_UMC11_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH17.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122858417-1875836 08G10_rep_A_Aniracetama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122858417-1875836 08G10_rep_A_Aniracetama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152706851-1868262 06D01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152706851-1868262 06D01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223407990-1870112 01B09_rep_B_Idoxuridineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223407990-1870112 01B09_rep_B_Idoxuridineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_SERUM_V2_SSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hldD_#4_P4F12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (hldD_#4_P4F12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113427318-1922446 2_F2_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113427318-1922446 2_F2_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_08P_A12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_C6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_E19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112324210-1921907 3_E3_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112324210-1921907 3_E3_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151247195-1576330 Batch5_NCIH345_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_G12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GH5_01_17115.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_83.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087752/peak/210628_Lund_ColitisInulin_isotopetracing_ExportSpectra.mzML at line 689
Premature end of data in tag binary line 3074609, line 3074609, column 3694 (210628_Lund_ColitisInulin_isotopetracing_ExportSpectra.mzML, line 3074609)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GD7_01_16950.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2D05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201242786-1881838 16C10_rep_B_Ethoxzolamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201242786-1881838 16C10_rep_B_Ethoxzolamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD5_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_12_leg_skin_RESV_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_12_leg_skin_RESV_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123411299-1876086 08B07_rep_B_Acetopromazine_maleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123411299-1876086 08B07_rep_B_Acetopromazine_maleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/440.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_I14_id_MSn_negative.mzML at line 21
index 333 is out of bounds for axis 0 with size 333
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GC3_01_17040.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pbpC_P4C5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (pbpC_P4C5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/btuE_#1_P4E1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (btuE_#1_P4E1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150145815-1864678 02F03_rep_B_Loxapine succinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150145815-1864678 02F03_rep_B_Loxapine succinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122927887-1880160 15D02_rep_D_5-fluorouracila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122927887-1880160 15D02_rep_D_5-fluorouracila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C3_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GF5_01_11704.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHD11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybjE_#1_P4C5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (ybjE_#1_P4C5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092426731-1878829 14E04_rep_A_Isosorbide_mononitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092426731-1878829 14E04_rep_A_Isosorbide_mononitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_9_Dorsal_skin_Ma_control_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_9_Dorsal_skin_Ma_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_E5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114207657-1874874 11H10_rep_D_Rabeprazole_Sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114207657-1874874 11H10_rep_D_Rabeprazole_Sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200941156-1877709 09G08_rep_B_Diphenylpyraline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200941156-1877709 09G08_rep_B_Diphenylpyraline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_196.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD079_P1-A-8_02_2407.mzML at line 88
Invalid base64-encoded string: number of data characters (5327793) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124731379-1876723 09D01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124731379-1876723 09D01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P18_id_MSn_positive.mzML at line 21
index 386 is out of bounds for axis 0 with size 386
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_A2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD4_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223614322-1870209 01C08_rep_C_Doxylamine succinatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223614322-1870209 01C08_rep_C_Doxylamine succinatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123442085-1876111 08F03_rep_B_Fenipentolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123442085-1876111 08F03_rep_B_Fenipentolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092960/raw/HILIC_plusDDA/HILIC/20221111-JC-471_HILIC_086_01.mzML at line 689
Premature end of data in tag binary line 13721, line 13721, column 21963 (20221111-JC-471_HILIC_086_01.mzML, line 13721)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_63.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_63.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114627044-1875079 12C04_rep_A_Diloxanide_furoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114627044-1875079 12C04_rep_A_Diloxanide_furoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180912_ES_H3K_batch2_repA_19.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202440828-1878388 10H05_rep_A_Eucatropine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202440828-1878388 10H05_rep_A_Eucatropine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_23_Dorsal_skin_EtOH_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_23_Dorsal_skin_EtOH_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084884/ccms_peak/w50_Alg.mzML at line 689
Premature end of data in tag spectrumList line 68, line 187419, column 1 (w50_Alg.mzML, line 187419)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rpe_P4G3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (rpe_P4G3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130551533-1877529 13G01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130551533-1877529 13G01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_B12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_B12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121950075-1867192 04F09_rep_C_Fipexide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121950075-1867192 04F09_rep_C_Fipexide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_08_007_prot_59_IMS_14Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112951203-1874328 11E07_rep_B_Ethynylestradiol_3-methyl_ethera.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112951203-1874328 11E07_rep_B_Ethynylestradiol_3-methyl_ethera.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafControlD3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafControlD3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/236.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/011_CRa_H9M5_M470_C14_K2_high_pos.mzXML at line 689
Premature end of data in tag peaks line 18336, line 18340, column 15861 (011_CRa_H9M5_M470_C14_K2_high_pos.mzXML, line 18340)
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_A_pos_IMS1_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152854748-1577123 Batch3_RERFLCA1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/301.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152135654-1868009 05G03_rep_C_Betaxolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152135654-1868009 05G03_rep_C_Betaxolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_48_RIN_20.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_48_RIN_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121511582-1879503 15C09_rep_A_Cladribineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121511582-1879503 15C09_rep_A_Cladribineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/006_Ammonia_Day7_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_C8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR27_5h3b.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ4_5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lamB_P5G8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (lamB_P5G8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_125.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150251985-1924325 1_F9_RGT2_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150251985-1924325 1_F9_RGT2_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113839425-1922664 3_F11_STE2_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113839425-1922664 3_F11_STE2_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nikD_P4C6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (nikD_P4C6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30155 - GI-17-445.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100926920-1869217 07H11_rep_A_Prenylamine_lactatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100926920-1869217 07H11_rep_A_Prenylamine_lactatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122408080-1879911 15H09_rep_C_Sildenafilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122408080-1879911 15H09_rep_C_Sildenafilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_N5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121909443-1867160 04A04_rep_C_Bufexamaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121909443-1867160 04A04_rep_C_Bufexamaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_E12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125753757-1863127 04C06_rep_A_Dimenhydrinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125753757-1863127 04C06_rep_A_Dimenhydrinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/195-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/911.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/31_D25062013T0229_1399CBU_0014_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nikC_P3A3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (nikC_P3A3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ12041415.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201748987-1882066 16H07_rep_C_Milnacipran_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201748987-1882066 16H07_rep_C_Milnacipran_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_0124_190125045117.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152927708-1577151 Batch3_HT1376_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20211005_LKM_beads_mb_HPB_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1012.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_H9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/YnYn-16d.mzXML at line 689
Premature end of data in tag peaks line 1803, line 1807, column 7672 (YnYn-16d.mzXML, line 1807)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pheP_#1_P5A4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (pheP_#1_P5A4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G6_id_MSn_positive.mzML at line 21
index 570 is out of bounds for axis 0 with size 570
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075316.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_qc_elow (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arnF_P4F11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (arnF_P4F11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153401134-1577369 Batch4_NCIH1793_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_148.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_148.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123248670-1876019 08F09_rep_B_Acipimoxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123248670-1876019 08F09_rep_B_Acipimoxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152025881-1576709 Batch1_NCIH2073_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYD023A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124930247-1862719 03A04_rep_B_Chlorzoxazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124930247-1862719 03A04_rep_B_Chlorzoxazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample129.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152325968-1868093 05F07_rep_D_Clofazimineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152325968-1868093 05F07_rep_D_Clofazimineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_A4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hC1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hC1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_17121408_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2A06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OD5.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHD05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201914169-1882133 16G09_rep_D_Palonosetron_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201914169-1882133 16G09_rep_D_Palonosetron_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B03P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ2_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_B12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control220_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control220_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153914205-1577629 Batch6_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample101.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122235166-1879840 15H06_rep_C_Pravastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122235166-1879840 15H06_rep_C_Pravastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113331933-1922397 2_D10_IZH2_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113331933-1922397 2_D10_IZH2_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6F07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_115_2C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-013_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152052362-1576730 Batch1_NCIH1975_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122500697-1867442 04B03_rep_D_Diphenidol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122500697-1867442 04B03_rep_D_Diphenidol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201937210-1878149 09B08_rep_D_Benzamil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201937210-1878149 09B08_rep_D_Benzamil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person10_blood_elder_POS.mzXML at line 689
attributes construct error, line 41, column 101 (Person10_blood_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD5_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_100.mzXML at line 689
Premature end of data in tag peaks line 21442, line 21446, column 15940 (20121114_100.mzXML, line 21446)
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/PDI-flfl-plasma-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121435761-1879477 15C03_rep_A_Dopamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121435761-1879477 15C03_rep_A_Dopamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_79.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_05_1055_prot_02_IMS_12Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/blank_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122912313-1875847 08A10_rep_A_Entacaponeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122912313-1875847 08A10_rep_A_Entacaponeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130145798-1877337 13G06_rep_B_Letrozolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130145798-1877337 13G06_rep_B_Letrozolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_E10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C22_id_MSn_positive.mzML at line 21
index 727 is out of bounds for axis 0 with size 727
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_16092759_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201218_LKM_no_wash_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124721265-1876715 09G01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124721265-1876715 09G01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097739/peak/QC MSMS pos.mzML at line 640
'selectedIonList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092530117-1878879 14G05_rep_B_Clonixin_Lysinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092530117-1878879 14G05_rep_B_Clonixin_Lysinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153803391-1868776 06A01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153803391-1868776 06A01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081034.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/804.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_E12_id_positive.mzML at line 21
index 313 is out of bounds for axis 0 with size 313
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_sample08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153133646-1577250 Batch4_NCIH2126_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113209774-1874431 11D10_rep_B_Ganciclovirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113209774-1874431 11D10_rep_B_Ganciclovirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNS580_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET46.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET46.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112734515-1874221 11F08_rep_A_(+)_-Levobunolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112734515-1874221 11F08_rep_A_(+)_-Levobunolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_3_B_rep_3_B-A8_1_5512.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224128305-1870450 01G06_rep_D_Diphenhydramine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224128305-1870450 01G06_rep_D_Diphenhydramine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101358421-1869434 07D01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101358421-1869434 07D01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112709240-1922104 4_D4_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112709240-1922104 4_D4_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153016442-1577191 Batch3_PANC0403_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_1_RESV_20uM_NEG.mzXML at line 689
attributes construct error, line 38, column 82 (C2C12_1_RESV_20uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121733333-1879611 15A04_rep_B_Doxycycline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121733333-1879611 15A04_rep_B_Doxycycline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223810032-2227644 PAT39.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8E03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/16032021_Batch06_QC_ 7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153207558-1577277 Batch5_NCIH727_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130228479-1877370 13F08_rep_B_Etilefrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130228479-1877370 13F08_rep_B_Etilefrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/(-)-epigallocatechin_neg.mzXML at line 689
Premature end of data in tag peaks line 9687, line 9691, column 44524 ((-)-epigallocatechin_neg.mzXML, line 9691)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111657125-1871599 10H05_rep_B_Eucatropine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111657125-1871599 10H05_rep_B_Eucatropine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122616643-1880010 15F09_rep_D_Telmisartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122616643-1880010 15F09_rep_D_Telmisartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_C6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B5_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151436175-1576421 Batch7_SUM149PT_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201959162-1878166 09C02_rep_D_Pranlukasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201959162-1878166 09C02_rep_D_Pranlukasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I10_id_MSn_negative.mzML at line 21
index 338 is out of bounds for axis 0 with size 338
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/102-4_Ms_25min__GE3_01_4168.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hA3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hA3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAJ11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121456915-1879493 15A02_rep_A_Buspirone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121456915-1879493 15A02_rep_A_Buspirone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153751306-1577559 Batch6_OVCAR8_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111612955-1871565 10G10_rep_B_Drofenine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111612955-1871565 10G10_rep_B_Drofenine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170207_029EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/87/f5e2d8d875dd363c86e691d4eb6e1b/input_file/SH10_20170207_029EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/006_1022_2_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201810601-1878083 09E01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201810601-1878083 09E01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151649100-1925036 4_F9_SNF3_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151649100-1925036 4_F9_SNF3_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample119_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082718/ccms_peak/peak/ST000666/EX00376-lipidomics/Raw data/POS/20141119_Authentic.mzXML at line 689
Specification mandates value for attribute rete, line 31419, column 19 (20141119_Authentic.mzXML, line 31419)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224014708-1870394 01D01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224014708-1870394 01D01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B8_id_MSn_negative.mzML at line 21
index 234 is out of bounds for axis 0 with size 234
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_115_1C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210505_LKM_on_ctrl_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170125_010EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/67/69747bf8e2b8c7ca7b24feb372d303/input_file/QC_20170125_010EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152450950-1576919 Batch2_IGROV1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152548758-1576967 Batch1_NCIH1838_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113136598-1874405 11G08_rep_B_Paromomycin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113136598-1874405 11G08_rep_B_Paromomycin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ppk_P5C2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (ppk_P5C2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ5_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152638099-1577008 Batch1_7860_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD1_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3G09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151412395-1576401 Batch6_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150711344-1864928 02F01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150711344-1864928 02F01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_115b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121558481-1879538 15B07_rep_A_Caffeinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121558481-1879538 15B07_rep_A_Caffeinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223845166-1870325 01G04_rep_C_Nifedipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223845166-1870325 01G04_rep_C_Nifedipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S01_0124_190125043441.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28022021_Batch02_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125442154-1862970 03B05_rep_D_Alverine_citrate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125442154-1862970 03B05_rep_D_Alverine_citrate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnG_P3E11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (phnG_P3E11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_86.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/53-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151209961-1576299 Batch5_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151130381-1924768 3_F1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151130381-1924768 3_F1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E8_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GE9_01_16892.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2F09P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_3_B_rep_1_B-B1_1_5514.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GC11_01_16814.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gmd_#2_P5F8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (gmd_#2_P5F8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170209_021ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/1f/6782ce829d00983b13eefaba0055f0/input_file/MMW3_20170209_021ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223755140-1870286 01G09_rep_C_Isoxsuprine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223755140-1870286 01G09_rep_C_Isoxsuprine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_E1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_11P_A1_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125449401-1862976 03G04_rep_D_Xylometazoline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125449401-1862976 03G04_rep_D_Xylometazoline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_19080521_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample116.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ5_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153239868-1577303 Batch4_DMS114_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124718759-1876713 09C07_rep_A_Nisoldipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124718759-1876713 09C07_rep_A_Nisoldipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153920092-1577634 Batch6_K562_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/796.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092820/raw/083123_Matthaei_Herbarium_lowmz/2020_Matthaei_nBuOH_150-450mz/Morinda-citrifolia-Flower-nBuOH-2020.mzML at line 689
Premature end of data in tag binary line 302345, line 302345, column 2934 (Morinda-citrifolia-Flower-nBuOH-2020.mzML, line 302345)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083383/updates/2019-10-30_allegraaron_e0b9cac9/other/allegraaron/Samples/mzXML_1/S_YBT-2_Zn.mzML at line 689
Premature end of data in tag index line 348485, line 348486, column 1 (S_YBT-2_Zn.mzML, line 348486)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B03P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample070_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-014.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-014.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125818399-1877180 13A08_rep_A_Gestrinoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125818399-1877180 13A08_rep_A_Gestrinoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152907700-1577134 Batch5_NCIH3255_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 Column1_test_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_120_2A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083183.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR37_5h1a.mzML at line 88
Invalid base64-encoded string: number of data characters (4141) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp2/20180309173113100-1989061 skin 5da.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GB10_01_16799.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_131_2B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ccmC_P3B1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (ccmC_P3B1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7A06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V1_LH.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150603231-1924486 1_F7_RGT2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150603231-1924486 1_F7_RGT2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114338542-1874948 12C02_rep_A_Hymecromonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114338542-1874948 12C02_rep_A_Hymecromonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201343747-1881884 16H04_rep_B_Raltitrexedb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201343747-1881884 16H04_rep_B_Raltitrexedb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122719464-1867554 05A11_rep_A_Bisoprolol_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122719464-1867554 05A11_rep_A_Bisoprolol_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12onlyDiluted_Replicate2_Level1_MSMS_pos.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/431.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Mag_02062001_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_G8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hldD_#4_P4F12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (hldD_#4_P4F12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GG4_01_16981.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (10).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101342055-1869421 07D09_rep_C_Budesonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101342055-1869421 07D09_rep_C_Budesonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009638_IBD200_E18_B4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095029/raw/DonahueData/MauiMCapitataBatch1/._PBQC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/006_Ammonia_Day11_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD6_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122931750-1867660 05G02_rep_B_Lidoflazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122931750-1867660 05G02_rep_B_Lidoflazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150816861-1924601 2_F7_RGT2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150816861-1924601 2_F7_RGT2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170125_018EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/5b/73243d3fb1b61d15176a32fd9a8b77/input_file/QC_20170125_018EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201420109-1877913 09F04_rep_C_Promazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201420109-1877913 09F04_rep_C_Promazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR224h1a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112525926-1874119 10B02_rep_D_Sulfaquinoxaline_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112525926-1874119 10B02_rep_D_Sulfaquinoxaline_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D20_id_MSn_positive.mzML at line 21
index 405 is out of bounds for axis 0 with size 405
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153650023-1577508 Batch4_SW1573_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/009_5uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150417225346.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007631_032118-0.01Thr1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_169.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GB5_01_11827.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091354/raw/130_50_01_2077.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_faux (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150608781-1864880 02F08_rep_C_Clindamycin hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150608781-1864880 02F08_rep_C_Clindamycin hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122805902-1875795 08A07_rep_A_Eserine_hemisulfate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122805902-1875795 08A07_rep_A_Eserine_hemisulfate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD1_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201425087-1881915 16H03_rep_C_Pemetrexed_disodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201425087-1881915 16H03_rep_C_Pemetrexed_disodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_A11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150645552-1864908 02E07_rep_C_Mefloquine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150645552-1864908 02E07_rep_C_Mefloquine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121752827-1879626 15H01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121752827-1879626 15H01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHF02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124655069-1876694 09E02_rep_A_Pranoprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124655069-1876694 09E02_rep_A_Pranoprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD5_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/160-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113655745-1874623 11D06_rep_C_Zolmitriptanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113655745-1874623 11D06_rep_C_Zolmitriptanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2A02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121840069-1879662 15D07_rep_B_Enoxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121840069-1879662 15D07_rep_B_Enoxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C9_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person04_plasma_youth_POS.mzXML at line 689
attributes construct error, line 41, column 91 (Person04_plasma_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD4_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GA5_01_12063.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124352780-1876552 09B01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124352780-1876552 09B01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std a 030a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fruK_P3G12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (fruK_P3G12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112233953-1921863 3_B10_GPR1_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112233953-1921863 3_B10_GPR1_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165927751-2227590 PAT42.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_17111316_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_H3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125155380-1862835 03C05_rep_C_Methocarbamolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125155380-1862835 03C05_rep_C_Methocarbamolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gpmA_P5H1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (gpmA_P5H1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_231.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153057215-1868438 06F10_rep_B_Butalbitala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153057215-1868438 06F10_rep_B_Butalbitala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/91.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081119/ccms_peak/Beers19_ms2ldaPLUS/NEGmode/Beer_multibeers_9_fullscan2.mzXML at line 689
Premature end of data in tag peaks line 25346, line 25350, column 665 (Beer_multibeers_9_fullscan2.mzXML, line 25350)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100220135-1868877 06C06_rep_D_Chicago_sky_blue_6Ba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100220135-1868877 06C06_rep_D_Chicago_sky_blue_6Ba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_15_RIN_47.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_15_RIN_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_10_leg_muscle_RESV_skin_POS.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_10_leg_muscle_RESV_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/leuC_P5A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (leuC_P5A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122635821-1867519 05G03_rep_A_Betaxolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122635821-1867519 05G03_rep_A_Betaxolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153333888-1577347 Batch4_CAKI1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124059069-1876411 08E01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124059069-1876411 08E01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113518090-1922490 2_E7_IZH2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113518090-1922490 2_E7_IZH2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_13_AC+_47.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-028.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-028.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B11_id.mzML at line 21
index 575 is out of bounds for axis 0 with size 575
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_O14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample217_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/D-fructose_1-phosphate_neg.mzXML at line 689
Premature end of data in tag peaks line 7047, line 7051, column 40428 (D-fructose_1-phosphate_neg.mzXML, line 7051)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.alb_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_13.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_13.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-4-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_72_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_72_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5T5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/5T5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114348413-1922939 4_D4_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114348413-1922939 4_D4_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_100.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_100.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6E12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124939601-1876786 12C09_rep_C_Ethynodiol_diacetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124939601-1876786 12C09_rep_C_Ethynodiol_diacetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample091_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151719968-1576557 Batch4_DU145_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H2_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153134867-1577251 Batch4_NCIH2126_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100612378-1869061 07C01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100612378-1869061 07C01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_A2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yihU_P3H7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (yihU_P3H7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152329178-1576854 Batch1_LK2_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224130940-1870452 01E01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224130940-1870452 01E01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150703672-1864922 02C01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150703672-1864922 02C01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170209_014ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/0c/9fe742fd75df3c282c17c0192e1ae5/input_file/SH7_20170209_014ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Blank_3_B-A1_1_5505.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_C5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GD12_01_12126.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_024ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c5/3a61e6f31709fc3385b5d72097fc68/input_file/QC_20170209_024ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124926234-1876776 12C03_rep_C_Abacavir_Sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124926234-1876776 12C03_rep_C_Abacavir_Sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172653910-1889910 NNa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/livM_P3A2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (livM_P3A2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rhaB_P3F8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (rhaB_P3F8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153736746-1577547 Batch6_NCIH146_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_A12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130825971-1877652 13A05_rep_C_Methacycline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130825971-1877652 13A05_rep_C_Methacycline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121826062-1867126 04A05_rep_C_Glutethimide,_para-aminoa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121826062-1867126 04A05_rep_C_Glutethimide,_para-aminoa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201531418-1881962 16F01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201531418-1881962 16F01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_plasma_0h_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Volunteer2_plasma_0h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (5).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_male_2022_1017_Michael_neg-0009.mzML at line 689
Premature end of data in tag binary line 5803, line 5803, column 938145 (pooled_male_2022_1017_Michael_neg-0009.mzML, line 5803)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_G9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123509317-1876133 08D06_rep_B_Exemestaneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123509317-1876133 08D06_rep_B_Exemestaneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA18.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-5-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_dilute_190201050734.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mtlA_#1_P4B7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (mtlA_#1_P4B7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130432889-1877467 13A04_rep_B_Enilconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130432889-1877467 13A04_rep_B_Enilconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114851042-1875193 12F08_rep_B_Dehydroisoandosterone_3-acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114851042-1875193 12F08_rep_B_Dehydroisoandosterone_3-acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_144.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_144.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET108.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET108.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nikB_P3D8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (nikB_P3D8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007553_031618-1CRP3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122109266-1867255 04E10_rep_C_Pyrilamine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122109266-1867255 04E10_rep_C_Pyrilamine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201214909-1877821 09F03_rep_B_Citalopram_Hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201214909-1877821 09F03_rep_B_Citalopram_Hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112058301-1873040 10F04_rep_C_Norgestrel-(-)-Da.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112058301-1873040 10F04_rep_C_Norgestrel-(-)-Da.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080389/peak/Peak_List_Files/mLm_CC_Tmem111_E18-5_AT2_Ctl_3_P_15Sep16_Arwen_16-08-17.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_92.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD5_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D22_id.mzML at line 21
index 540 is out of bounds for axis 0 with size 540
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/606.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_96.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/16FEB2021 Column3_test_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122615292-1880009 15C04_rep_D_Cefdinirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122615292-1880009 15C04_rep_D_Cefdinirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_G2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153730834-1577542 Batch4_DU145_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223813474-2227647 PAT40.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201433848-1877923 09G05_rep_C_Bromoprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201433848-1877923 09G05_rep_C_Bromoprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_SERUM_V5_SSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_G9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009373_IBD200_E2_B4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165721582-2227474 PAT38.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_L5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEE1_30EV_RA4_01_22729.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153241119-1577304 Batch4_SW780_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201608537-1881990 16B11_rep_C_Estramustineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201608537-1881990 16B11_rep_C_Estramustineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124945475-1862731 03F07_rep_C_Tiapride_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124945475-1862731 03F07_rep_C_Tiapride_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150226205-1924304 1_H8_RGT2_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150226205-1924304 1_H8_RGT2_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V2_EDTAk2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_134.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_134.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1202.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1202.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GD3_01_16820.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L4_id_MSn_negative.mzML at line 21
index 311 is out of bounds for axis 0 with size 311
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_100AGC_pluskal_mce_1D1_A8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100510906-1869012 06B06_rep_D_Modafinilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100510906-1869012 06B06_rep_D_Modafinilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/A1/CNS654_A1_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrdB_P4E10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (nrdB_P4E10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_3153_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_136.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122622454-1867508 05B10_rep_A_Guanfacine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122622454-1867508 05B10_rep_A_Guanfacine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111330729-1871441 10H08_rep_B_Methotrimeprazine_maleat_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111330729-1871441 10H08_rep_B_Methotrimeprazine_maleat_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_F16_id_MSn_negative.mzML at line 21
index 297 is out of bounds for axis 0 with size 297
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113108939-1922273 1_D1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113108939-1922273 1_D1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_M17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Methylobacterium_LYH001B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083383/updates/2019-10-30_allegraaron_e0b9cac9/other/allegraaron/Hui_N1_fe.mzXML at line 689
Premature end of data in tag peaks line 60859, line 60863, column 22987 (Hui_N1_fe.mzXML, line 60863)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike0_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/688.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_AW3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6C03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007702_032218-5CRP6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114318979-1922913 4_C5_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114318979-1922913 4_C5_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Citrobacter_braakii_EB1I002A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121344459-1879438 15G08_rep_A_Docetaxela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121344459-1879438 15G08_rep_A_Docetaxela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_C3_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A24_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/003_Ammonia_Day0_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170125_011EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/24/6f4296b961607944035f49ad96bd98/input_file/QC_20170125_011EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrfC_P3G7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (nrfC_P3G7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I17_id_MSn_positive.mzML at line 21
index 423 is out of bounds for axis 0 with size 423
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170127_016ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e2/91dae5ea8e56c36e2d07e6a5c62e60/input_file/SH7_20170127_016ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130039403-1877286 13C10_rep_A_Chlormadinone_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130039403-1877286 13C10_rep_A_Chlormadinone_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151133117-1865132 02E11_rep_D_Dexamethasone acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151133117-1865132 02E11_rep_D_Dexamethasone acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_194.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_17121406_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/448.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130510180-1877496 13G04_rep_C_Isometheptene_mucateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130510180-1877496 13G04_rep_C_Isometheptene_mucateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C9_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/405.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210115_AD_41.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7A02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/xanP_#1_P4G3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (xanP_#1_P4G3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_G1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hdhA_P3A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (hdhA_P3A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082793/ccms_peak/raw/MTBLS227/37382-B12-1.mzXML at line 88
Invalid base64-encoded string: number of data characters (258817) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_122b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_375.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H5_id.mzML at line 21
index 520 is out of bounds for axis 0 with size 520
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_A8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123641371-1876206 08G04_rep_C_Pyridoxine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123641371-1876206 08G04_rep_C_Pyridoxine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223835028-2227666 PAT46.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_C1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101737576-1869609 07D10_rep_C_Imipenema.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101737576-1869609 07D10_rep_C_Imipenema.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBacsR33h1a.mzML at line 689
Opening and ending tag mismatch: binary line 100144 and spectrum, line 100185, column 20 (pBacsR33h1a.mzML, line 100185)
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person23_plasma_elder_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person23_plasma_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113231096-1874448 11E10_rep_B_Clinafloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113231096-1874448 11E10_rep_B_Clinafloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007611_032118-Unst1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample140_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L65cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L65cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201103772-1881764 16A11_rep_B_Troxipideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201103772-1881764 16A11_rep_B_Troxipideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw6_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089385/raw/TOF_T3_pos_MS1/TOF_T3_Pos-JC-1058-37_01.mzML at line 689
Premature end of data in tag binary line 39224, line 39224, column 64629 (TOF_T3_Pos-JC-1058-37_01.mzML, line 39224)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_C7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ribE_P5B4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ribE_P5B4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_D9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/001_FC_2_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122315494-1867357 04C07_rep_D_Disopyramideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122315494-1867357 04C07_rep_D_Disopyramideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085693/ccms_peak/MRM-validation cohort/BC MRM 10th batch.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124858987-1862694 03D10_rep_B_Prilocaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124858987-1862694 03D10_rep_B_Prilocaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-8-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113501716-1874532 11B06_rep_C_Fosfosala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113501716-1874532 11B06_rep_C_Fosfosala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_19080521_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123210199-1867782 05A02_rep_B_Streptomycin_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123210199-1867782 05A02_rep_B_Streptomycin_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/238.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4A07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124707794-1862605 03G06_rep_B_Nifenazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124707794-1862605 03G06_rep_B_Nifenazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124216205-1876473 08C09_rep_D_Galanthamine_hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124216205-1876473 08C09_rep_D_Galanthamine_hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172716666-1889927 Wb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113546274-1922514 2_D4_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113546274-1922514 2_D4_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130113998-1863293 04C01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130113998-1863293 04C01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/80.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_A7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_17091608_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-076_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8B01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153820881-1577584 Batch6_K562_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gapA_P5A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (gapA_P5A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091749613-1878518 13E02_rep_D_Alfadolone_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091749613-1878518 13E02_rep_D_Alfadolone_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phoE_P3B12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (phoE_P3B12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112330971-1873642 10G11_rep_D_Cycloheximideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112330971-1873642 10G11_rep_D_Cycloheximideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/153-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_elow (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/chrR_P3F7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (chrR_P3F7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123054261-1875927 08H07_rep_A_Penciclovirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123054261-1875927 08H07_rep_A_Penciclovirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210120_AD_31.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121204621-1879364 14C10_rep_D_Mesalaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121204621-1879364 14C10_rep_D_Mesalaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111741553-1871634 10F08_rep_C_Alexidine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111741553-1871634 10F08_rep_C_Alexidine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101757750-1869626 07C01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101757750-1869626 07C01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151245958-1576329 Batch5_HCC1187_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114750613-1875144 12E10_rep_B_Ketorolac_tromethaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114750613-1875144 12E10_rep_B_Ketorolac_tromethaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122956853-1867680 05B03_rep_B_Practolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122956853-1867680 05B03_rep_B_Practolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hA1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hA1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190112_ES_H3K_batch13_repA_189.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/002_CRa_H9M5_M470_Pool_01_high_pos.mzXML at line 689
Premature end of data in tag peaks line 14156, line 14160, column 60920 (002_CRa_H9M5_M470_Pool_01_high_pos.mzXML, line 14160)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170209_058ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/53/686821b85db922d43fc4b107960dd1/input_file/SH7_20170209_058ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM4AG004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6G03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_1_B_rep_4_B-E2_1_5860.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYB009A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121507136-1866970 04D09_rep_B_Cinnarizinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121507136-1866970 04D09_rep_B_Cinnarizinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_78.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A9Bs5mm_black_P1-A-9_01_23060.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100725709-1869121 07F03_rep_A_Grepafloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100725709-1869121 07F03_rep_A_Grepafloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113315966-1922383 1_G1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113315966-1922383 1_G1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MSB06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD4_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096669/ccms_peak/3_30_2022_1003_Michael_leming_liver_neg-0.0056.mzML at line 689
Premature end of data in tag binary line 3510, line 3510, column 3345726 (3_30_2022_1003_Michael_leming_liver_neg-0.0056.mzML, line 3510)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B10_id_MSn_negative.mzML at line 21
index 288 is out of bounds for axis 0 with size 288
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_rerun_D12_BD8_01_12040.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151611066-1576499 Batch7_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170125_061EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/6b/c57953f7858af88d177574980d0eb4/input_file/SH8_20170125_061EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_F10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114013508-1922748 3_G11_STE2_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114013508-1922748 3_G11_STE2_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_33_CNR_50.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_33_CNR_50.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_CABIN_PLASMA_longterm_storage_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095819/raw/202312_205_Piperine_10uM_1uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_110.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fpr_#1_P4D8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (fpr_#1_P4D8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_10_NOR_30.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_10_NOR_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG010A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-022_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D3_postFOS_2_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHL18.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hB2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hB2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130100555-1877302 13E09_rep_B_Gabexate_mesilateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130100555-1877302 13E09_rep_B_Gabexate_mesilateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153557278-1577464 Batch4_NCIH2342_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/696.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202158713-1878260 10G02_rep_A_Clobetasol_propionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202158713-1878260 10G02_rep_A_Clobetasol_propionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151519677-1576456 Batch7_CORL23_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD5_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111831944-1872059 10C11_rep_C_Mevalonic-D,_L_acid_lactoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111831944-1872059 10C11_rep_C_Mevalonic-D,_L_acid_lactoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152350315-1576871 Batch1_NCIH1993_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/956.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_64.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/851.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_05_RIN_53.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_05_RIN_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7D07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112044279-1873029 10A04_rep_C_Phenethicillin_potassium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112044279-1873029 10A04_rep_C_Phenethicillin_potassium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/R48_III_ESI+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ugpE_#3_P4C7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (ugpE_#3_P4C7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cobC_#3_P4F8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (cobC_#3_P4F8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121849307-1879669 15A01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121849307-1879669 15A01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I4_id_MSn_positive.mzML at line 21
index 658 is out of bounds for axis 0 with size 658
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/131-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151034874-1924720 3_E7_SNF3_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151034874-1924720 3_E7_SNF3_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_A2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121606221-1867016 04H11_rep_B_Fluphenazine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121606221-1867016 04H11_rep_B_Fluphenazine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_D11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNR698_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152517426-1576941 Batch1_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152321619-1576848 Batch2_NCIH2444_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ4_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180904_ES_H3K_batch1_repD_7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130326040-1877415 13G11_rep_B_Torsemidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130326040-1877415 13G11_rep_B_Torsemidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike3_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM6G003Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122413312-1879915 15H04_rep_C_Formoterol_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122413312-1879915 15H04_rep_C_Formoterol_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_4_Liver_HO_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 86 (Mouse_4_Liver_HO_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151220804-1576308 Batch5_NCIH2135_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122120293-1867264 04A08_rep_D_Albendazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122120293-1867264 04A08_rep_D_Albendazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1082.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B13P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N18_id_MSn_negative.mzML at line 21
index 314 is out of bounds for axis 0 with size 314
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153520900-1577434 Batch4_ASPC1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/slt_P3F7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (slt_P3F7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8F07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082735/ccms_peak/ST000664/EX00347-lipidomics/Raw data/NEG/BATCH1/20150318_Authentic.mzXML at line 689
Extra content at the end of the document, line 58185, column 2 (20150318_Authentic.mzXML, line 58185)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101654953-1869574 07E08_rep_C_Tenoxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101654953-1869574 07E08_rep_C_Tenoxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151753273-1576584 Batch4_DMS53_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152729471-1577051 Batch1_HCC15_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101359695-1869435 07B04_rep_C_Omeprazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101359695-1869435 07B04_rep_C_Omeprazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_cc7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/4_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_A13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arsB_P4A2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024988 (arsB_P4A2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d8_278_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 41139, column 1 (SysVirol_IFT001_1918_d8_278_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 41139)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case224_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case224_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153143634-1577258 Batch4_NCIH2126_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153739149-1577549 Batch6_HL60_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD1_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R17_5h1a.mzML at line 689
Opening and ending tag mismatch: isolationWindow line 171967 and binary, line 171968, column 242 (pBlichMO17R17_5h1a.mzML, line 171968)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123935578-1876345 08A05_rep_D_Pentobarbitalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123935578-1876345 08A05_rep_D_Pentobarbitalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ1_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_E7_id_negative.mzML at line 21
index 246 is out of bounds for axis 0 with size 246
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_174.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092605220-1878906 14D03_rep_B_Lansoprazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092605220-1878906 14D03_rep_B_Lansoprazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111820706-1921646 2_H2_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111820706-1921646 2_H2_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151418539-1924913 4_B11_SNF3_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151418539-1924913 4_B11_SNF3_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/655.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person29_plasma_elder_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person29_plasma_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A13_id_MSn_negative.mzML at line 21
index 219 is out of bounds for axis 0 with size 219
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_2_P_rep_2_B-B5_1_5834.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_dilute_190131165641.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/141-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_262.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112032718-1873020 10H11_rep_C_Amrinonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112032718-1873020 10H11_rep_C_Amrinonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092554693-1878898 14A08_rep_B_Piretanidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092554693-1878898 14A08_rep_B_Piretanidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S102.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S102.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_083a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/adiA_P3C10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (adiA_P3C10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/garL_P4B8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (garL_P4B8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glxR_#1_P5A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (glxR_#1_P5A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000096497/peak/20211008_ProgressCurveAnalysis-repeat_Acs_set8_eff8_t9_rep1.mzML at line 689
Premature end of data in tag binary line 265, line 265, column 30770 (20211008_ProgressCurveAnalysis-repeat_Acs_set8_eff8_t9_rep1.mzML, line 265)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_04_leg_skin_RESV_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_04_leg_skin_RESV_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121916891-1867166 04A06_rep_C_Dropropizine_(R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121916891-1867166 04A06_rep_C_Dropropizine_(R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122121389-1879784 15A11_rep_B_Estradiol_Valeratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122121389-1879784 15A11_rep_B_Estradiol_Valeratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pdxB_P3C9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (pdxB_P3C9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5A05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087354/raw/190814_Serin_WP2.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/442.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223201299-1870016 01B04_rep_B_Hydroflumethiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223201299-1870016 01B04_rep_B_Hydroflumethiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD4_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_G4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNS580_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpTen3_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092339822-1878793 14G04_rep_A_4-aminosalicylic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092339822-1878793 14G04_rep_A_4-aminosalicylic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_48_NOR_54.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_48_NOR_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_B13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111726318-1921599 1_B1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111726318-1921599 1_B1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_13_AC+_47.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124842642-1862681 03F11_rep_B_Indapamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124842642-1862681 03F11_rep_B_Indapamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121333982-1879430 15D11_rep_A_Lamotriginea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121333982-1879430 15D11_rep_A_Lamotriginea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD2_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007551_031618-1CRP3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_O6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgsA_P4G11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (pgsA_P4G11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_102b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/029_CRa_H9M5_M470_L01_K3_low_pos.mzXML at line 689
Premature end of data in tag msRun line 5, line 15245, column 1 (029_CRa_H9M5_M470_L01_K3_low_pos.mzXML, line 15245)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D3_id_MSn_positive.mzML at line 21
index 616 is out of bounds for axis 0 with size 616
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-041_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095029/raw/DonahueData/MauiMCapitataBatch1/._WM_Methanol_7.mzML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (._WM_Methanol_7.mzML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093526/peak/mzML/DIA/Blk_Water_POS_DIA_20mz.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/24 Sept 2021 - Copy/convert/210924_04.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/XYT-10d.mzXML at line 689
Premature end of data in tag peaks line 25344, line 25348, column 7670 (XYT-10d.mzXML, line 25348)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122704625-1867542 05D01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122704625-1867542 05D01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1447.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1447.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223509587-1870159 01G05_rep_B_Chlorpromazine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223509587-1870159 01G05_rep_B_Chlorpromazine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075352.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G4_id_MSn_negative.mzML at line 21
index 334 is out of bounds for axis 0 with size 334
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_A7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_A7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rbsA_#1_P5B5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (rbsA_#1_P5B5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_030EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/8a/5e51d5311d23a974e0242479e38b09/input_file/QC_20170207_030EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trpE_#4_P5H2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (trpE_#4_P5H2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202310921-1878317 10F04_rep_A_Norgestrel-(-)-Db.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202310921-1878317 10F04_rep_A_Norgestrel-(-)-Db.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165728013-2227480 PAT36.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_blank_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/temp/SYL-TSQ-13-06-21_L80.mzXML at line 689
Premature end of data in tag msRun line 5, line 491320, column 1 (SYL-TSQ-13-06-21_L80.mzXML, line 491320)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152414554-1576890 Batch2_NCIH596_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4B12_160531104535.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/423.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case161_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case161_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/grxB_P3B3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (grxB_P3B3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tehB_P4G1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (tehB_P4G1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/347.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151917229-1576654 Batch5_COLO205_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ldcA_P3D5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (ldcA_P3D5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100501161-1869004 06B11_rep_D_Erlotinibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100501161-1869004 06B11_rep_D_Erlotinibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152053635-1867975 05C02_rep_C_Furosemideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152053635-1867975 05C02_rep_C_Furosemideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201715117-1882040 16G08_rep_C_Risedronic_acid_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201715117-1882040 16G08_rep_C_Risedronic_acid_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151606012-1924999 4_D3_WT_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151606012-1924999 4_D3_WT_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Pseudomonas_libanensis_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_109.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_B5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-faux (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/puuA_P3H12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (puuA_P3H12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094943/raw/MS2/Moustafa_AT_1st.mzML at line 689
Premature end of data in tag indexedmzML line 2, line 23972, column 1 (Moustafa_AT_1st.mzML, line 23972)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100322715-1868926 06B02_rep_D_Androsteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100322715-1868926 06B02_rep_D_Androsteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Acido_24295.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125924521-1863203 04F03_rep_A_Trazodone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125924521-1863203 04F03_rep_A_Trazodone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150234507-1924311 1_A11_RGT2_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150234507-1924311 1_A11_RGT2_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091845462-1878563 13D06_rep_D_Fluvoxamine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091845462-1878563 13D06_rep_D_Fluvoxamine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ddpA_P3A3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (ddpA_P3A3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125430867-1862961 03F07_rep_D_Tiapride_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125430867-1862961 03F07_rep_D_Tiapride_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/896.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafTreatedA2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafTreatedA2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200942535-1881704 16E06_rep_A_Phenothiazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200942535-1881704 16E06_rep_A_Phenothiazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/605.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121747653-1879622 15A05_rep_B_Sulbactama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121747653-1879622 15A05_rep_B_Sulbactama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GB3_01_16919.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114330262-1922923 4_A2_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114330262-1922923 4_A2_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152244892-1576819 Batch1_LK2_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121658682-1879585 15D06_rep_A_Triclosanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121658682-1879585 15D06_rep_A_Triclosanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_C10_id_positive.mzML at line 21
index 417 is out of bounds for axis 0 with size 417
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_CABIN_sample04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082793/raw/raw/MTBLS227/37382-A04-2 CaCo2_05 MS3 interrupted after 20min.mzML at line 642
Multiple selected ions lists for a precursor violates mzML schema.
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_12_Dorsal_skin_Ma_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 93 (Mouse_12_Dorsal_skin_Ma_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152810094-1577085 Batch3_RERFLCA1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100555014-1869047 07G02_rep_A_Ciclopirox_ethanolaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100555014-1869047 07G02_rep_A_Ciclopirox_ethanolaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1554.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1554.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201654058-1882024 16C08_rep_C_Algestone_acetophenideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201654058-1882024 16C08_rep_C_Algestone_acetophenideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201046607-1877757 09F06_rep_B_Venlafaxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201046607-1877757 09F06_rep_B_Venlafaxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170209_064ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/96/4c1740289276eb78e563293d100b3c/input_file/MMW3_20170209_064ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114104999-1922793 4_A5_WT_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114104999-1922793 4_A5_WT_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_F2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sufB_P3G8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (sufB_P3G8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111739048-1871632 10A08_rep_C_Liranaftateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111739048-1871632 10A08_rep_C_Liranaftateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_344.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_C4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150345551-1864769 02F07_rep_C_Astemizoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150345551-1864769 02F07_rep_C_Astemizoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_15102011_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113825351-1922652 3_B2_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113825351-1922652 3_B2_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/dhap-g3p_tpiA_P4B12_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024900 (dhap-g3p_tpiA_P4B12_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_69_NOR_15.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_69_NOR_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_11_blood_RESV_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_11_blood_RESV_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153257027-1577317 Batch4_NCIH1793_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNP082_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_dilute_190201070349.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/684.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152818404-1577092 Batch3_HT1376_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093526/peak/mzML/DIA/Sa02_Water_POS_DIA_40mz.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6C01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170207_049EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e1/cc2ac9727335c464447896f44d4025/input_file/SH9_20170207_049EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/zupT_#1_P5G5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (zupT_#1_P5G5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike3_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Pos/P9.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_234_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_142.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-faux (6).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165729179-2227481 PAT36.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_ 20170209_016ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/17/1d63901e8acd7e4c364f90ebe86b71/input_file/SH8_ 20170209_016ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gshA_#3_P5G3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (gshA_#3_P5G3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113821176-1874691 11A01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113821176-1874691 11A01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114357518-1922947 4_E9_STE2_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114357518-1922947 4_E9_STE2_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_B19_id_MSn_negative.mzML at line 21
index 313 is out of bounds for axis 0 with size 313
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152114261-1867992 05G10_rep_C_Ketoconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152114261-1867992 05G10_rep_C_Ketoconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125039375-1876831 12H07_rep_C_Megestrol_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125039375-1876831 12H07_rep_C_Megestrol_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_18092931_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_C3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200955749-1877720 09G11_rep_B_Doxofyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200955749-1877720 09G11_rep_B_Doxofyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170127_015ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/7e/dc07d649f81fe1896f2c6e2a10f92d/input_file/MMW6_20170127_015ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F10_id_MSn_negative.mzML at line 21
index 338 is out of bounds for axis 0 with size 338
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ghrA_#1_P6B6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (ghrA_#1_P6B6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_C7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083395/peak/mzML/Fecal1_SPE_60H2O-40MeOH.mzML at line 689
AttValue: ' expected, line 358227, column 36 (Fecal1_SPE_60H2O-40MeOH.mzML, line 358227)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112953823-1874330 11H06_rep_B_Reserpinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112953823-1874330 11H06_rep_B_Reserpinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S16_0126_190128192638.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/008_CRa_H9M5_M470_H14_K1_low_pos.mzXML at line 689
Premature end of data in tag peaks line 11743, line 11747, column 28151 (008_CRa_H9M5_M470_H14_K1_low_pos.mzXML, line 11747)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I24_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152048752-1867971 05E02_rep_C_Bambuterol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152048752-1867971 05E02_rep_C_Bambuterol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/5.1_ITA_VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150544316-1864861 02F05_rep_C_Diltiazem hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150544316-1864861 02F05_rep_C_Diltiazem hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case41_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case41_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD1_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_19032112_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100345385-1868944 06G11_rep_D_Ceforanideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100345385-1868944 06G11_rep_D_Ceforanideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201158543-1881805 16B05_rep_B_Tegaserod_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201158543-1881805 16B05_rep_B_Tegaserod_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/260.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152307776-1576837 Batch1_HX147_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD6_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_A8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/1-8-diaminooctane.mzXML at line 689
Premature end of data in tag peaks line 8607, line 8611, column 19952 (1-8-diaminooctane.mzXML, line 8611)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD2_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D3_postFOS_1_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_C9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_P10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165723755-2227476 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125737780-1877149 13C05_rep_A_Oxfendazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125737780-1877149 13C05_rep_A_Oxfendazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223114739-1869981 01D03_rep_A_Epirizolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223114739-1869981 01D03_rep_A_Epirizolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170209_019ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c4/7b666bed535dce76609bac6bb238cc/input_file/SH9_20170209_019ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100645845-1869088 07E05_rep_A_Tiabendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100645845-1869088 07E05_rep_A_Tiabendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101914888-1869688 07C05_rep_D_Etifeninb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101914888-1869688 07C05_rep_D_Etifeninb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD4_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD4_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112425769-1874071 10F07_rep_D_Guaifenesinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112425769-1874071 10F07_rep_D_Guaifenesinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130633770-1877562 13E10_rep_C_Pivampicillinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130633770-1877562 13E10_rep_C_Pivampicillinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample14n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_A2_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088606/peak/210116_AR_03_AGE016_D04_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114355256-1922945 4_C2_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114355256-1922945 4_C2_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101420902-1869452 07G09_rep_C_Chloroquine_diphosphateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101420902-1869452 07G09_rep_C_Chloroquine_diphosphateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V1_LH.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D22_id_negative.mzML at line 21
index 262 is out of bounds for axis 0 with size 262
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8H12_160605182053.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170127_039ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/64/e5f9586cf7cebe2cb5e472bbc5d9cf/input_file/SH10_20170127_039ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125237400-1862869 03A01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125237400-1862869 03A01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GD8_01_11970.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000083351/ccms_peak/BAs Animals one group/Desktop/.localized at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114644735-1875093 12G08_rep_B_Prazosin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114644735-1875093 12G08_rep_B_Prazosin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122242915-1879846 15A09_rep_C_Mepivacaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122242915-1879846 15A09_rep_C_Mepivacaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/20221212_carryover_test_noISTD_PLASMA_sample02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152529531-1868187 05A06_rep_D_Ascorbic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152529531-1868187 05A06_rep_D_Ascorbic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123203993-1867777 05B08_rep_B_Procainamide_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123203993-1867777 05B08_rep_B_Procainamide_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_G7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7H03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082736/ccms_peak/ST000779/EX00375-lipidomics/Raw data/POS/20141113_Pooled.mzXML at line 689
Specification mandates value for attribute msLevel, line 1481, column 22 (20141113_Pooled.mzXML, line 1481)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124339505-1862324 03G07_rep_A_Griseofulvinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124339505-1862324 03G07_rep_A_Griseofulvinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/MS2/MC_1_2_3_4 Pos Reps/DataMC_MF_Pos_1_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082789/ccms_peak/raw/MTBLS309/MS2/MC_1_2_3_4 Pos Reps/DataMC_MF_Pos_1_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092908470-1879049 14A02_rep_C_Etomidateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092908470-1879049 14A02_rep_C_Etomidateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092139493-1878698 14B08_rep_A_Oxprenolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092139493-1878698 14B08_rep_A_Oxprenolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_190.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_C12_id_MSn_positive.mzML at line 21
index 418 is out of bounds for axis 0 with size 418
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H7_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Spombe_cell_sample1_NEG.mzXML at line 689
attributes construct error, line 38, column 79 (Spombe_cell_sample1_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD4_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_183.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080705/ccms_peak/RAW/6h_lysC_BA.mzML at line 648
Multiple activations for a single precursor is not yet implemented. 
                                                         File: input_file/6h_lysC_BA.mzML 
                                                         Scan: 770
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152336766-1576860 Batch2_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GC7_01_17168.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0036_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0036_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ribC_P3F1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ribC_P3F1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_42.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_42.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092744/ccms_peak/WT_veh_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165657873-2227452 PAT51.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_D16_id_MSn_negative.mzML at line 21
index 335 is out of bounds for axis 0 with size 335
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GE6_01_16837.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Blank_pesticide_170403032725.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G19_id_MSn_positive.mzML at line 21
index 692 is out of bounds for axis 0 with size 692
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_A8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3C11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/541-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151927895-1576663 Batch7_NCIH2444_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ubiE_P4C5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ubiE_P4C5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124847328-1876747 12H04_rep_C_(R)-(+)-Atenololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124847328-1876747 12H04_rep_C_(R)-(+)-Atenololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125123384-1862809 03D05_rep_C_Nimesulideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125123384-1862809 03D05_rep_C_Nimesulideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_12_leg_muscle_RESV_skin_POS.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_12_leg_muscle_RESV_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202120575-1882231 16D07_rep_D_Fenoldopama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202120575-1882231 16D07_rep_D_Fenoldopama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_33_CNR_15.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_33_CNR_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145554542-1863918 02B06_rep_A_Lynestrenolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145554542-1863918 02B06_rep_A_Lynestrenolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121608560-1879546 15B10_rep_A_Phentermine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121608560-1879546 15B10_rep_A_Phentermine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_elow (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample153_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_122.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnC_P4D4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (phnC_P4D4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F24_id_negative.mzML at line 21
index 262 is out of bounds for axis 0 with size 262
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114102299-1874821 11F06_rep_D_Beclomethasone_dipropionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114102299-1874821 11F06_rep_D_Beclomethasone_dipropionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_08_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_08_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET40.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET40.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_19071524_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122642156-1880030 15C03_rep_D_Dopamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122642156-1880030 15C03_rep_D_Dopamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V4_EDTAk3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD4_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GG4_01_16864.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202015514-1878179 09D10_rep_D_Ibandronate_sodium_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202015514-1878179 09D10_rep_D_Ibandronate_sodium_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_111.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/23.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151911337-1576649 Batch7_NCIH1693_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_098a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_E8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC10.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113927864-1922707 3_B7_STE2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113927864-1922707 3_B7_STE2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223719484-2227600 Healthy1.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GD6_01_17057.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fsaA_P4D2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (fsaA_P4D2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_A1_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD3_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114630790-1875082 12C01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114630790-1875082 12C01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123400179-1876077 08F06_rep_B_(-)-Emtricitabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123400179-1876077 08F06_rep_B_(-)-Emtricitabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_44_RIN_51.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_44_RIN_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152037641-1867962 05E01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152037641-1867962 05E01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR324h2a.mzML at line 689
expected '>', line 210089, column 19 (pBlateR324h2a.mzML, line 210089)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nirD_P3E5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (nirD_P3E5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111815378-1872046 10B04_rep_C_Metoprolol-(+,-)_(+)-tartrate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111815378-1872046 10B04_rep_C_Metoprolol-(+,-)_(+)-tartrate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/FIL2_40EV_RA3_01_22497.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_A6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/124-4_MsMs_25min_30eV_GE5_01_4133.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165930858-2227593 Healthy6.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/103.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD1_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7E11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_G12_id_positive.mzML at line 21
index 321 is out of bounds for axis 0 with size 321
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_B12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085515/ccms_peak/X2-14.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125433476-1877007 12E05_rep_D_Roliprama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125433476-1877007 12E05_rep_D_Roliprama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201105823-1877771 09D07_rep_B_Beta-Escinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201105823-1877771 09D07_rep_B_Beta-Escinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153725536-1868746 06H09_rep_C_Felodipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153725536-1868746 06H09_rep_C_Felodipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_BUME_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153241126-1868519 06A11_rep_B_Amphotericin_Bb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153241126-1868519 06A11_rep_B_Amphotericin_Bb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person09_RBC_elder_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Person09_RBC_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_114.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122430804-1879928 15A06_rep_C_Fleroxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122430804-1879928 15A06_rep_C_Fleroxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152547574-1576966 Batch1_NCIH1838_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114206427-1874873 11B06_rep_D_Fosfosalb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114206427-1874873 11B06_rep_D_Fosfosalb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/002_Soil_10mMExtra_1_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/001_FC_3_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/ade_deoD_P3E7_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024913 (ade_deoD_P3E7_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153623683-1577486 Batch4_SKOV3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD2_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121144361-1879349 14G01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121144361-1879349 14G01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087069/raw/BRB Liquid Convert pos/BBR_R17500_N40_I10e6_E60_pos_06292020.mzML at line 689
Premature end of data in tag binary line 44317, line 44317, column 111293 (BBR_R17500_N40_I10e6_E60_pos_06292020.mzML, line 44317)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151513152-1576451 Batch6_SR8714_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123921672-1876334 08D03_rep_C_Etofenamatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123921672-1876334 08D03_rep_C_Etofenamatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125756231-1877163 13B08_rep_A_Zardaverinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125756231-1877163 13B08_rep_A_Zardaverinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082735/ccms_peak/ST000664/EX00347-lipidomics/Raw data/POS/BATCH2/20150323_Test.mzXML at line 689
Extra content at the end of the document, line 67636, column 1 (20150323_Test.mzXML, line 67636)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_PLASMA_baseline_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007677_032118-1CRP3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113451571-1874524 11A05_rep_C_Spectinomycin_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113451571-1874524 11A05_rep_C_Spectinomycin_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125243577-1862874 03D03_rep_C_Thalidomidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125243577-1862874 03D03_rep_C_Thalidomidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113448270-1922464 2_H2_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113448270-1922464 2_H2_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/419.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_B5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220312_LKM_adipocytes_31C_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_53.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223730969-2227610 PAT35.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_J3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD3_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD3_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123157774-1867772 05E10_rep_B_Meloxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123157774-1867772 05E10_rep_B_Meloxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/betB_P3B8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (betB_P3B8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/patA_#2_P4E9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (patA_#2_P4E9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_D20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/006_Soil_500mMIntra_3_Col1_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/g6p_otsA_P3C11_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 634, column 10024826 (g6p_otsA_P3C11_Aquity_neg.mzXML, line 634)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample163.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/5.4_ITA _VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GD7_01_11674.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151301810-1576342 Batch6_NCIH2171_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C15_id_MSn_positive.mzML at line 21
index 581 is out of bounds for axis 0 with size 581
Error processing file: /data/datasets/server/MassIVE/MSV000079506/raw/XZ_131231_A5,M2,gluc_bMSMS.mzML at line 689
Specification mandates value for attribute acc, line 3548, column 34 (XZ_131231_A5,M2,gluc_bMSMS.mzML, line 3548)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201233959-1877835 09G06_rep_B_Methyl_benzethonium_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201233959-1877835 09G06_rep_B_Methyl_benzethonium_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_D1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_H4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201246007-1877844 09D01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201246007-1877844 09D01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gntU_P4E3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (gntU_P4E3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_243.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fhuA_#2_P4B8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (fhuA_#2_P4B8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/002_Urea_Day9_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122758061-1880089 15F02_rep_D_Topotecanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122758061-1880089 15F02_rep_D_Topotecanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_45.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR17_5h3b.mzML at line 88
Invalid base64-encoded string: number of data characters (5721) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc1_T0_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121058129-1879314 14D08_rep_D_Formestanea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121058129-1879314 14D08_rep_D_Formestanea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G22_id_negative.mzML at line 21
index 251 is out of bounds for axis 0 with size 251
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD3_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222814805-1869846 01G02_rep_A_Morantel tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222814805-1869846 01G02_rep_A_Morantel tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153010110-1868404 06E05_rep_A_Oxcarbazepinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153010110-1868404 06E05_rep_A_Oxcarbazepinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/-ve_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_M13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mntP_P3A8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (mntP_P3A8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNS654_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/006_Ammonia_Day11_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case191_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case191_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ilvN_P5A4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (ilvN_P5A4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_A16_id_MSn_negative.mzML at line 21
index 285 is out of bounds for axis 0 with size 285
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170127_032ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e6/48227d16aad1f44b1e76620e4d3bb4/input_file/SH8_20170127_032ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0022_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0022_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD6_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_E5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/33-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_A10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_D5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_blood_0h_NEG.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer2_blood_0h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case120_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case120_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHL25.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151436175-1576421 Batch7_SUM149PT_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151547051-1924983 4_F7_SNF3_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151547051-1924983 4_F7_SNF3_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_E8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132914817-1733895 1pool Wound5D 2 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_P22_id_MSn_positive.mzML at line 21
index 563 is out of bounds for axis 0 with size 563
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1101-A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112305805-1873622 10G05_rep_D_Bendroflumethiazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112305805-1873622 10G05_rep_D_Bendroflumethiazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/437.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/fdp-tagdpD_pfkA_P6D7_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024897 (fdp-tagdpD_pfkA_P6D7_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/livM_P3A2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (livM_P3A2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D21_id_MSn_positive.mzML at line 21
index 619 is out of bounds for axis 0 with size 619
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153838442-1577599 Batch7_NCIH441_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153348554-1868572 06A01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153348554-1868572 06A01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111933290-1872588 10D04_rep_C_Demeclocycline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111933290-1872588 10D04_rep_C_Demeclocycline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30102 - GI-14-071.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112211186-1873578 10A03_rep_D_Isopyrin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112211186-1873578 10A03_rep_D_Isopyrin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130101767-1863283 04E05_rep_A_Diethylcarbamazine_citrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130101767-1863283 04E05_rep_A_Diethylcarbamazine_citrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111515633-1921101 1_C7_GAP1_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111515633-1921101 1_C7_GAP1_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112426918-1874072 10E04_rep_D_Meclofenoxate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112426918-1874072 10E04_rep_D_Meclofenoxate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180824_ES_H3K_batch10_repC_139.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150613591-1924495 2_G3_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150613591-1924495 2_G3_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_19_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_19_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-139_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_17121408_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hC1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hC1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165744630-2227495 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/acrB_P6H5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (acrB_P6H5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180903_ES_H3K_batch1_repC_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfE_P3B9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (hyfE_P3B9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB1B11.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2G07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S84.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S84.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F10_id_MSn_positive.mzML at line 21
index 410 is out of bounds for axis 0 with size 410
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125228723-1862862 03E04_rep_C_Flufenamic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125228723-1862862 03E04_rep_C_Flufenamic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_BD3_01_17267.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_B_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/950.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112443973-1921977 3_C7_GPR1_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112443973-1921977 3_C7_GPR1_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_G11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180915_ES_H3K_batch2_repD_21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_G7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150722212-1924554 2_A10_RGT2_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150722212-1924554 2_A10_RGT2_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113718728-1874641 11G04_rep_C_Ciclesonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113718728-1874641 11G04_rep_C_Ciclesonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123827265-1876290 08A09_rep_C_Acarbosea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123827265-1876290 08A09_rep_C_Acarbosea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_133.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102002796-1869727 07A11_rep_D_Iobenguane_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102002796-1869727 07A11_rep_D_Iobenguane_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114301175-1922897 4_H5_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114301175-1922897 4_H5_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_CABIN_sample05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113057194-1922263 1_F2_WT_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113057194-1922263 1_F2_WT_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/420.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_102a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD1_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ygaH_P5D4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ygaH_P5D4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202406394-1878361 10G07_rep_A_Methimazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202406394-1878361 10G07_rep_A_Methimazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150445955-1924420 1_E1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150445955-1924420 1_E1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_E6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153934191-1577646 Batch6_SF268_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control166_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control166_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_04_leg_skin_RESV_oral_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_04_leg_skin_RESV_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR33h3aT2.mzML at line 689
Unescaped '<' not allowed in attributes values, line 27794, column 2406 (pBlateR33h3aT2.mzML, line 27794)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/45-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094491/raw/MpTen2_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_11P_A10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079466/peak/Adenocalymma imperatoris/AIS-NEG.mgf at line 1048
'str' object cannot be interpreted as an integer
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150932184-1924666 2_D9_RGT2_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150932184-1924666 2_D9_RGT2_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113723408-1922598 3_H3_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113723408-1922598 3_H3_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125145700-1862827 03H07_rep_C_Dilazep_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125145700-1862827 03H07_rep_C_Dilazep_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1138.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152455766-1576923 Batch1_CALU3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_204.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/227.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHK014.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/Alb-PDI-plasma-VLDL-30-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pdxH_P6A5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (pdxH_P6A5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample152.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdgK_#1_P4B3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (kdgK_#1_P4B3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152452132-1576920 Batch2_IGROV1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125915285-1877224 13H04_rep_A_Nomegestrol_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125915285-1877224 13H04_rep_A_Nomegestrol_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111953606-1921725 2_C5_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111953606-1921725 2_C5_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_D7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124229863-1876484 08A09_rep_D_Acarbosea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124229863-1876484 08A09_rep_D_Acarbosea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00080286.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Heart_raw files/Lumos_ISAS_heart_labeled_3.mzML at line 689
Premature end of data in tag spectrumList line 92, line 34324, column 1 (Lumos_ISAS_heart_labeled_3.mzML, line 34324)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MSA06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085122/peak/19.mzXML at line 689
Specification mandates value for attribute compressed2Qu0ckGtI, line 27797, column 33 (19.mzXML, line 27797)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091708877-1878486 13H08_rep_D_Zalcitabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091708877-1878486 13H08_rep_D_Zalcitabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_D7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rbsK_#1_P3F11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (rbsK_#1_P3F11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_C8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET55.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET55.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112327635-1921910 3_A1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112327635-1921910 3_A1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_E1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GC12_01_11661.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_116b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_J3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS305Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125743061-1863118 04B04_rep_A_Norethindronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125743061-1863118 04B04_rep_A_Norethindronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G4_id_MSn_positive.mzML at line 21
index 403 is out of bounds for axis 0 with size 403
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122531193-1867467 05H04_rep_A_Hemicholinium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122531193-1867467 05H04_rep_A_Hemicholinium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4E02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/976.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123148976-1867765 05A06_rep_B_Ascorbic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123148976-1867765 05A06_rep_B_Ascorbic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB1H12.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130001413-1877260 13D02_rep_A_Gliquidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130001413-1877260 13D02_rep_A_Gliquidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113936661-1922715 3_C7_STE2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113936661-1922715 3_C7_STE2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_H8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124615781-1876663 09B02_rep_A_Glimepirideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124615781-1876663 09B02_rep_A_Glimepirideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0039_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0039_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170209_062ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c8/8f8c7902562642e927b0d047f5c786/input_file/SH8_20170209_062ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_42.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124326117-1876530 08D10_rep_D_Celiprolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124326117-1876530 08D10_rep_D_Celiprolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mrcB_#2_P6F10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (mrcB_#2_P6F10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153232560-1577297 Batch4_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/003_Ammonia_Day4_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_E2_id_positive.mzML at line 21
index 315 is out of bounds for axis 0 with size 315
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GH2_01_16995.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112027445-1921754 2_B2_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112027445-1921754 2_B2_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223340499-1870091 01E07_rep_B_Naphazoline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223340499-1870091 01E07_rep_B_Naphazoline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223329986-1870083 01F06_rep_B_Acetohexamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223329986-1870083 01F06_rep_B_Acetohexamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxB_#1_P4A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (lpxB_#1_P4A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132924572-1733903 1pool Skin 3 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_25_2022_1003_Michael_leming_liver_neg-0.0049.mzML at line 689
Premature end of data in tag binary line 17798, line 17798, column 1401532 (3_25_2022_1003_Michael_leming_liver_neg-0.0049.mzML, line 17798)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122623623-1867509 05B10_rep_A_Guanfacine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122623623-1867509 05B10_rep_A_Guanfacine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122857137-1875835 08G06_rep_A_Cytarabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122857137-1875835 08G06_rep_A_Cytarabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087069/raw/BRB Liquid Convert pos/BBR_R17500_N40_I10e6_E30_pos_06292020.mzML at line 689
Premature end of data in tag binary line 117896, line 117896, column 166825 (BBR_R17500_N40_I10e6_E30_pos_06292020.mzML, line 117896)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124411033-1876567 09H08_rep_A_Finasterideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124411033-1876567 09H08_rep_A_Finasterideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007618_032118-Unst4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122557426-1879995 15E01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122557426-1879995 15E01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/366.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130706402-1877588 13D10_rep_C_Proguanil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130706402-1877588 13D10_rep_C_Proguanil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153440436-1577401 Batch4_184A1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD2_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person23_blood_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 83 (Person23_blood_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A22_id.mzML at line 21
index 584 is out of bounds for axis 0 with size 584
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/23_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case183_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case183_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/384.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_3_P_rep_1_B-A4_1_5636.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_sample09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD3_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_B4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/16032021_Batch06_QC_ 3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroC_P6C12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (aroC_P6C12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152859395-1577127 Batch5_HOP92_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metL_P4H1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (metL_P4H1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD5_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121509871-1866972 04D07_rep_B_Bumetanidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121509871-1866972 04D07_rep_B_Bumetanidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113648645-1874617 11H10_rep_C_Rabeprazole_Sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113648645-1874617 11H10_rep_C_Rabeprazole_Sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hD1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hD1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GE3_01_16960.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_0126.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1084.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_E8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V8_LH.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cydB_#2_P5G1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (cydB_#2_P5G1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113331769-1874497 11G05_rep_B_Methylhydantoin-5-(D)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113331769-1874497 11G05_rep_B_Methylhydantoin-5-(D)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170125_025EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/c4/75efed371909683746d5661d6db8fc/input_file/MMW4_20170125_025EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_10_leg_skin_RESV_skin_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_10_leg_skin_RESV_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202037664-1882198 16H11_rep_D_Cefprozilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202037664-1882198 16H11_rep_D_Cefprozilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201337981-1877882 09E04_rep_C_Pempidine_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201337981-1877882 09E04_rep_C_Pempidine_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112140638-1873554 10D01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112140638-1873554 10D01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HepG2_2_RESV_20uM_NEG.mzXML at line 689
attributes construct error, line 38, column 82 (HepG2_2_RESV_20uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G13_id.mzML at line 21
index 618 is out of bounds for axis 0 with size 618
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130631202-1877560 13G09_rep_C_Benzathine_benzylpenicillinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130631202-1877560 13G09_rep_C_Benzathine_benzylpenicillinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GB11_01_17034.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180417_ES_H3K_batch6_repA_89.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_E9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_F17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LEA2_30EV_RA2_01_22555.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ulaG_P3D1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (ulaG_P3D1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/210924_02.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_E12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122931741-1880163 15H06_rep_D_Pravastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122931741-1880163 15H06_rep_D_Pravastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/deoC_#2_P4D4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (deoC_#2_P4D4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ubiH_#1_P4H9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (ubiH_#1_P4H9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113414613-1922435 2_H3_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113414613-1922435 2_H3_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_D7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4C12_160531152132.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1I002C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GC6_01_11484.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000097681/peak/amino acids/030521-b1-RN-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201139811-1881791 16F05_rep_B_Histamine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201139811-1881791 16F05_rep_B_Histamine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yieH_#3_P4H2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (yieH_#3_P4H2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152242429-1576817 Batch2_NCIH2172_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/106-3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S20_0126_190128160730.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/008_CRa_H9M5_M470_H14_K1_high_pos.mzXML at line 689
Premature end of data in tag peaks line 15904, line 15908, column 15853 (008_CRa_H9M5_M470_H14_K1_high_pos.mzXML, line 15908)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101509315-1869490 07G06_rep_C_Tetramisole_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101509315-1869490 07G06_rep_C_Tetramisole_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153456306-1577414 Batch4_NCIH2342_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122505524-1867446 04B02_rep_D_Chlorothiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122505524-1867446 04B02_rep_D_Chlorothiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153602090-1577468 Batch4_NCIH1666_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_30.mzXML at line 689
Premature end of data in tag peaks line 19453, line 19457, column 3654 (20121114_30.mzXML, line 19457)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210324_AD_23.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_P16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_B9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_B9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/456.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150603641-1864876 02A07_rep_C_Acyclovira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150603641-1864876 02A07_rep_C_Acyclovira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150515861-1864839 02F11_rep_C_Tetracycline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150515861-1864839 02F11_rep_C_Tetracycline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ4_1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223012501-1869934 01F01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223012501-1869934 01F01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Hymenobacter_LYG005A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GD11_01_16954.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_2_B_rep_4_B-B6_1_5648.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_D4_01_12206.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122949448-1875876 08D09_rep_A_Xylazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122949448-1875876 08D09_rep_A_Xylazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122051706-1867241 04G01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122051706-1867241 04G01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152754274-1868299 06C04_rep_A_Carisoprodolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152754274-1868299 06C04_rep_A_Carisoprodolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col2_JX_04102015_150413142135.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mobB_#1_P4G10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (mobB_#1_P4G10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/433.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130045421-1863269 04G08_rep_A_Oxytetracycline_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130045421-1863269 04G08_rep_A_Oxytetracycline_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_E10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1218.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1218.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/cal_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-8-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007636_032118-0.01Thr3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case157_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case157_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H12_id_MSn_positive.mzML at line 21
index 583 is out of bounds for axis 0 with size 583
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G2_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152933607-1577156 Batch3_PANC0327_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093025561-1879108 14A10_rep_C_Oxyphenbutazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093025561-1879108 14A10_rep_C_Oxyphenbutazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_56.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101943178-1869711 07G07_rep_D_Pregnenolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101943178-1869711 07G07_rep_D_Pregnenolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ispH_P3B8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (ispH_P3B8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153158690-1577270 Batch3_KU1919_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_D9_id.mzML at line 21
index 560 is out of bounds for axis 0 with size 560
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075693.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100558733-1869050 07E02_rep_A_Lofexidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100558733-1869050 07E02_rep_A_Lofexidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088017/ccms_peak/12308-gsnor5-15_Treffon-001.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114659147-1875104 12F11_rep_B_Allopurinola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114659147-1875104 12F11_rep_B_Allopurinola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153203781-1577274 Batch4_NCIH1869_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/471.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125944467-1863220 04E04_rep_A_Homochlorcyclizine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125944467-1863220 04E04_rep_A_Homochlorcyclizine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/305.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114106131-1922794 4_C7_STE2_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114106131-1922794 4_C7_STE2_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092051603-1878661 14G08_rep_A_Ramiprilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092051603-1878661 14G08_rep_A_Ramiprilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD5_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_QC_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case199_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case199_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113833331-1874701 11A08_rep_C_Chloropyramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113833331-1874701 11A08_rep_C_Chloropyramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150946942-1865049 02B06_rep_D_Lynestrenolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150946942-1865049 02B06_rep_D_Lynestrenolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153301691-1868535 06H08_rep_B_Progesteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153301691-1868535 06H08_rep_B_Progesteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_413_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_sample07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153541072-1868661 06H06_rep_C_Brompheniramine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153541072-1868661 06H06_rep_C_Brompheniramine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike0_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/572-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_F8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_D3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D20_id_MSn_positive.mzML at line 21
index 608 is out of bounds for axis 0 with size 608
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111524770-1921494 1_F5_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111524770-1921494 1_F5_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case207_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case207_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123244791-1876016 08B02_rep_B_Tetracaine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123244791-1876016 08B02_rep_B_Tetracaine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V7_EDTAk3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113732330-1874652 11B04_rep_C_Bucladesine_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113732330-1874652 11B04_rep_C_Bucladesine_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091748360-1878517 13G10_rep_D_Risperidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091748360-1878517 13G10_rep_D_Risperidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/16FEB2021 Column3_test_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121701096-1867059 04C07_rep_B_Disopyramideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121701096-1867059 04C07_rep_B_Disopyramideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202028508-1878189 09F06_rep_D_Venlafaxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202028508-1878189 09F06_rep_D_Venlafaxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D3_preFOS_3_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GH9_01_17002.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD3_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152757117-1577074 Batch2_PC3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/673.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_227.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_C6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113712341-1874636 11D04_rep_C_Ifosfamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113712341-1874636 11D04_rep_C_Ifosfamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4D12_160531182310.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_K5_id.mzML at line 21
index 478 is out of bounds for axis 0 with size 478
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Blank_pesticide_Swabs_170403195336.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201456758-1881939 16A05_rep_C_Nevirapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201456758-1881939 16A05_rep_C_Nevirapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150123545-1864180 02E08_rep_B_Isoconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150123545-1864180 02E08_rep_B_Isoconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_120.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GD2_01_11962.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nhoA_P4E11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (nhoA_P4E11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152048584-1576727 Batch1_UMUC3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_A12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_007EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e9/761f9b059f0437eb1cf16be9e5875d/input_file/QC_20170209_007EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_E9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153745199-1577554 Batch7_MIAPACA2_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHJ04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GG3_01_11546.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100830315-1869172 07G09_rep_A_Chloroquine_diphosphateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100830315-1869172 07G09_rep_A_Chloroquine_diphosphateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113734953-1922608 3_D8_STE2_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113734953-1922608 3_D8_STE2_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_41_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_41_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nirD_P3E5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (nirD_P3E5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_152.mzXML at line 689
Premature end of data in tag msRun line 5, line 24015, column 1 (20121114_152.mzXML, line 24015)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_44_RIN_51.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_44_RIN_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113306682-1922375 1_A1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113306682-1922375 1_A1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_181.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_181.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165919077-2227582 PAT50.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/icd_P5G12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (icd_P5G12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151521433-1924965 4_H7_SNF3_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151521433-1924965 4_H7_SNF3_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR13h2b.mzML at line 689
Opening and ending tag mismatch: binary line 174904 and spectrum, line 174935, column 20 (pBpumR13h2b.mzML, line 174935)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114735541-1875132 12G04_rep_B_Pralidoxime_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114735541-1875132 12G04_rep_B_Pralidoxime_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124313372-1862303 03D02_rep_A_Midodrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124313372-1862303 03D02_rep_A_Midodrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091840462-1878559 13F01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091840462-1878559 13F01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200908696-1881679 16F01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200908696-1881679 16F01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125715780-1863095 03E11_rep_D_Fenbendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125715780-1863095 03E11_rep_D_Fenbendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202248087-1878299 10D02_rep_A_Terazosin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202248087-1878299 10D02_rep_A_Terazosin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152224310-1868046 05H10_rep_D_Prochlorperazine_dimaleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152224310-1868046 05H10_rep_D_Prochlorperazine_dimaleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD2_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8F02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M19_id_negative.mzML at line 21
index 251 is out of bounds for axis 0 with size 251
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_A9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD3_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152408182-1868125 05E07_rep_D_Ambroxol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152408182-1868125 05E07_rep_D_Ambroxol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092088/updates/2023-07-17_ste_labbioquimi_05cfd127/peak/Branco_S_6.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD4_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD4_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GH12_01_17005.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_K6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_55.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190109_ES_H3K_batch12_repB_177.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123517937-1876140 08E06_rep_B_Carbadoxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123517937-1876140 08E06_rep_B_Carbadoxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_E4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230424 - 1-JHU39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG015A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009568_IBD200_E13_B12.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092747404-1878985 14H09_rep_B_Cefepime_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092747404-1878985 14H09_rep_B_Cefepime_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113601275-1922527 2_B8_IZH2_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113601275-1922527 2_B8_IZH2_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arnE_P3A4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (arnE_P3A4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_10_B-A2_1_5862.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_C10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113350626-1874512 11F06_rep_B_Beclomethasone_dipropionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113350626-1874512 11F06_rep_B_Beclomethasone_dipropionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113151881-1874417 11B07_rep_B_Suprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113151881-1874417 11B07_rep_B_Suprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F8_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152817201-1577091 Batch3_A498_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hA1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hA1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151811455-1576599 Batch7_UMC11_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092003159-1878624 13A06_rep_D_Floxuridinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092003159-1878624 13A06_rep_D_Floxuridinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_35_AC+_15.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111352255-1871457 10F10_rep_B_Zomepirac_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111352255-1871457 10F10_rep_B_Zomepirac_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153923641-1577637 Batch6_NCIH146_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100825206-1869168 07H08_rep_A_Dirithromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100825206-1869168 07H08_rep_A_Dirithromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124413465-1862351 03B11_rep_A_Flutamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124413465-1862351 03B11_rep_A_Flutamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080128/ccms_peak/20100309_Ctherm_SWG_PU4_T05_96hr_SCX_LTQ3_Run1/20100309_Ctherm_SWG_PU4_T05_96hr_SCX_LTQ3_Run1_08.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122550120-1867482 05D09_rep_A_Pemirolast_potassiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122550120-1867482 05D09_rep_A_Pemirolast_potassiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1334.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1334.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111410300-1871471 10D01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111410300-1871471 10D01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125109762-1876853 12H08_rep_C_Deoxycorticosteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125109762-1876853 12H08_rep_C_Deoxycorticosteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/004_1018_1_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET50.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET50.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113845640-1874711 11F09_rep_D_Doxazosin_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113845640-1874711 11F09_rep_D_Doxazosin_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_19040307_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153333888-1577347 Batch4_CAKI1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD4_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_94.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP02_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132956072-1733928 1fb Wound5D 3 1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/213-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153611644-1577476 Batch4_NCIH1666_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_59.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123833607-1876295 08H04_rep_C_Thiorphanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123833607-1876295 08H04_rep_C_Thiorphanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153451478-1577410 Batch5_A704_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153830235-1577592 Batch6_NCIH526_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152033735-1867959 05F04_rep_C_Amethopterin_(R,S)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152033735-1867959 05F04_rep_C_Amethopterin_(R,S)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_18_AC+_30.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person02_plasma_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person02_plasma_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_60.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150012182-1864125 02B07_rep_B_Guanabenz acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150012182-1864125 02B07_rep_B_Guanabenz acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_A15M_pos_IMS1_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgaD_#4_P5A4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (pgaD_#4_P5A4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H22_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_018EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/d9/8f3a144e2b0d3e2351b1001385dd40/input_file/QC_20170207_018EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114647294-1875095 12A06_rep_B_Dolasetron_mesilateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114647294-1875095 12A06_rep_B_Dolasetron_mesilateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD4_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093015365-1879101 14H04_rep_C_Viomycin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093015365-1879101 14H04_rep_C_Viomycin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224301480-1870523 01B02_rep_D_Meticranea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224301480-1870523 01B02_rep_D_Meticranea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD1_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/btuF_P3A9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (btuF_P3A9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_09_leg_muscle_control_skin_POS.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_09_leg_muscle_control_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113619708-1922543 2_G9_IZH2_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113619708-1922543 2_G9_IZH2_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223238615-1870044 01D01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223238615-1870044 01D01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152429777-1576902 Batch2_NCIH2170_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nikE_P4A8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (nikE_P4A8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151421988-1576409 Batch7_NCIH1734_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1768.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1768.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_PY79.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007613_032118-Unst2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151526005-1924968 4_B8_SNF3_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151526005-1924968 4_B8_SNF3_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153728081-1868748 06E07_rep_C_Carteolol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153728081-1868748 06E07_rep_C_Carteolol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_74.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082777/ccms_peak/raw/MTBLS461/mtab_grazing_tsq_74.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201056115-1877764 09F10_rep_B_Hexestrola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201056115-1877764 09F10_rep_B_Hexestrola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/239.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/allE_P3E5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (allE_P3E5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/865.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHD01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113551065-1922518 2_A1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113551065-1922518 2_A1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113357547-1922420 2_E1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113357547-1922420 2_E1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075708.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col1_JX_04152015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112444292-1874086 10C09_rep_D_Monensin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112444292-1874086 10C09_rep_D_Monensin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223230785-1870038 01A05_rep_B_Metformin hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223230785-1870038 01A05_rep_B_Metformin hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ROO2_20EV_RA3_01_22563.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_65_NOR_40.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_65_NOR_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aceA_P3F2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (aceA_P3F2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153037524-1577206 Batch3_NCIH661_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_H11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L18_id_MSn_positive.mzML at line 21
index 533 is out of bounds for axis 0 with size 533
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E11_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093136057-1879161 14E08_rep_C_Nelarabineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093136057-1879161 14E08_rep_C_Nelarabineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glxR_#1_P5A11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (glxR_#1_P5A11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101818665-1869643 07G05_rep_D_Tobramycina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101818665-1869643 07G05_rep_D_Tobramycina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113338086-1874502 11A02_rep_B_Carbinoxamine_maleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113338086-1874502 11A02_rep_B_Carbinoxamine_maleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152442737-1868151 05A01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152442737-1868151 05A01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D1_postFOS_1_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122157065-1867294 04A07_rep_D_Pinacidila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122157065-1867294 04A07_rep_D_Pinacidila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121415784-1879462 15C06_rep_A_Celecoxiba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121415784-1879462 15C06_rep_A_Celecoxiba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223315804-1870072 01A04_rep_B_Acetazolamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223315804-1870072 01A04_rep_B_Acetazolamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150412094-1924392 1_E5_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150412094-1924392 1_E5_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150418055345.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113329643-1922395 1_B1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113329643-1922395 1_B1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_C4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_K11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170207_051EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ab/375d46b84a7538dbb140e467d9b05c/input_file/SH9_20170207_051EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2E01P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/600.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_C16_id_MSn_negative.mzML at line 21
index 330 is out of bounds for axis 0 with size 330
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G4_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124111719-1876421 08B03_rep_D_Mometasone_furoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124111719-1876421 08B03_rep_D_Mometasone_furoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088790/raw/AFN12.mzXML at line 689
Opening and ending tag mismatch: peaks line 66458 and scan, line 66472, column 12 (AFN12.mzXML, line 66472)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_175.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C11_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151807354-1867842 05B10_rep_C_Guanfacine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151807354-1867842 05B10_rep_C_Guanfacine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/016_100uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150418103346.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H24_id_negative.mzML at line 21
index 279 is out of bounds for axis 0 with size 279
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_N11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153553660-1868671 06C10_rep_C_Valacyclovir_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153553660-1868671 06C10_rep_C_Valacyclovir_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150418268-1864794 02B11_rep_C_Nocodazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150418268-1864794 02B11_rep_C_Nocodazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224331437-1870547 01C11_rep_D_Antipyrine, 4-hydroxya.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224331437-1870547 01C11_rep_D_Antipyrine, 4-hydroxya.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B12_id_MSn_positive.mzML at line 21
index 514 is out of bounds for axis 0 with size 514
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_134.mzXML at line 689
Premature end of data in tag peaks line 21867, line 21871, column 15939 (20121114_134.mzXML, line 21871)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151901548-1576641 Batch5_HCC1187_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_H7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_B17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150335608-1924361 1_A10_RGT2_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150335608-1924361 1_A10_RGT2_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hB1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hB1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152112688-1576746 Batch1_MDAMB436_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/57-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_84.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD6_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_A9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123954298-1876360 08F06_rep_D_(-)-Emtricitabinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123954298-1876360 08F06_rep_D_(-)-Emtricitabinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113311860-1874481 11F03_rep_B_Nylidrinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113311860-1874481 11F03_rep_B_Nylidrinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/shiA_P3E1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (shiA_P3E1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113700812-1922578 2_C4_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113700812-1922578 2_C4_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111853672-1872076 10G03_rep_C_Podophyllotoxina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111853672-1872076 10G03_rep_C_Podophyllotoxina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_08P_C4_id_positive.mzML at line 21
index 358 is out of bounds for axis 0 with size 358
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100321460-1868925 06B02_rep_D_Androsteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100321460-1868925 06B02_rep_D_Androsteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112855246-1922199 4_F8_GPR1_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112855246-1922199 4_F8_GPR1_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MIXEE_20170127_006ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e2/f74109233d7ffca344f6929c43feab/input_file/MIXEE_20170127_006ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD5_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130440772-1877473 13E04_rep_B_Azapropazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130440772-1877473 13E04_rep_B_Azapropazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/abgT_P3E8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (abgT_P3E8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112652953-1874188 11G03_rep_A_Raloxifene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112652953-1874188 11G03_rep_A_Raloxifene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H17_id_MSn_positive.mzML at line 21
index 681 is out of bounds for axis 0 with size 681
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152359051-1868118 05C08_rep_D_Thioguanosinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152359051-1868118 05C08_rep_D_Thioguanosinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120859881-1879225 14E03_rep_D_(-)-Eseroline_fumarate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120859881-1879225 14E03_rep_D_(-)-Eseroline_fumarate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GG7_01_16867.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_25_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (20100920_25_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111945337-1921718 2_A7_GAP1_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111945337-1921718 2_A7_GAP1_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_20_Dorsal_skin_EtOH_control_NEG.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_20_Dorsal_skin_EtOH_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_A4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H4_id_MSn_positive.mzML at line 21
index 358 is out of bounds for axis 0 with size 358
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBacsR324h2a.mzML at line 689
Opening and ending tag mismatch: spectrum line 40902 and binary, line 40907, column 242 (pBacsR324h2a.mzML, line 40907)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C1_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/805.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101901369-1869677 07C10_rep_D_Bromperidola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101901369-1869677 07C10_rep_D_Bromperidola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151523202-1576459 Batch6_NCIH1838_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112017642-1873008 10D10_rep_C_Methacholine_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112017642-1873008 10D10_rep_C_Methacholine_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201729678-1878052 09B11_rep_C_Avermectin_B1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201729678-1878052 09B11_rep_C_Avermectin_B1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121347107-1879440 15F05_rep_A_Ibudilasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121347107-1879440 15F05_rep_A_Ibudilasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/197-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_N3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_D3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125354989-1876978 12D06_rep_D_Lorglumide_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125354989-1876978 12D06_rep_D_Lorglumide_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125322108-1862905 03E09_rep_C_Trimethoprim_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125322108-1862905 03E09_rep_C_Trimethoprim_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152109573-1867988 05A01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152109573-1867988 05A01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_D7_id_MSn_positive.mzML at line 21
index 714 is out of bounds for axis 0 with size 714
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoM_#5_P4H5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (nuoM_#5_P4H5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_251.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N16_id_MSn_negative.mzML at line 21
index 304 is out of bounds for axis 0 with size 304
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122225264-1867316 04D07_rep_D_Bumetanidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122225264-1867316 04D07_rep_D_Bumetanidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091038/metadata/miltonsilva/Negative_samples/SM-Fo-D1_Neg.mzML at line 689
Unescaped '<' not allowed in attributes values, line 2989, column 429 (SM-Fo-D1_Neg.mzML, line 2989)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wecB_P4F11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (wecB_P4F11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000088606/ccms_peak/210116_AR_14_HB_09_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_153.mzXML at line 689
Premature end of data in tag peaks line 23550, line 23554, column 3654 (20121114_153.mzXML, line 23554)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_blank_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151126699-1576264 Batch5_PC9_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_A18_id_MSn_positive_2.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col2_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_D3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202148259-1882253 16B08_rep_D_Tolcaponea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202148259-1882253 16B08_rep_D_Tolcaponea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_054ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ab/f595b188eeff981b5f5c42f8f42c5b/input_file/QC_20170209_054ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122007899-1867206 04G03_rep_C_Lincomycin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122007899-1867206 04G03_rep_C_Lincomycin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_J8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111651485-1921569 1_B7_GAP1_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111651485-1921569 1_B7_GAP1_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/Alb-PDI-plasma-5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pdxJ_P3C9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (pdxJ_P3C9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_042EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/52/190632268890526ec080ba69d74893/input_file/QC_20170207_042EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_191.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_K17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GC8_01_11959.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_B9_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cyoC_P3D6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (cyoC_P3D6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_N11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_B10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_115.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223504265-1870155 01C10_rep_B_Antipyrinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223504265-1870155 01C10_rep_B_Antipyrinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_05_1037_prot_49_IMS_12Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007523_031618-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113314816-1922382 1_G1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113314816-1922382 1_G1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHE03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1450.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1450.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fepG_P4B6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (fepG_P4B6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151125789-1924764 3_B11_SNF3_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151125789-1924764 3_B11_SNF3_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111916639-1872575 10B09_rep_C_Folinic_acid_calcium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111916639-1872575 10B09_rep_C_Folinic_acid_calcium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124146488-1876449 08D06_rep_D_Exemestaneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124146488-1876449 08D06_rep_D_Exemestaneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8C05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122939399-1880169 15C11_rep_D_Fluconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122939399-1880169 15C11_rep_D_Fluconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_J10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153504966-1577421 Batch4_SW1573_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1005.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/blank_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD5_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_54_RIN_54.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_54_RIN_54.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088423/raw/Massive/Xesto/ss10.mzXML at line 689
Start tag expected, '<' not found, line 1, column 1 (ss10.mzXML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130017159-1877271 13C07_rep_A_Proscillaridin_Aa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130017159-1877271 13C07_rep_A_Proscillaridin_Aa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlichMO17R331_5h1a.mzML at line 689
Unescaped '<' not allowed in attributes values, line 251330, column 312 (pBlichMO17R331_5h1a.mzML, line 251330)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/garR_#1_P3A10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (garR_#1_P3A10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD1_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD1_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A9_id_negative.mzML at line 21
index 256 is out of bounds for axis 0 with size 256
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113829697-1874698 11E11_rep_C_Equilina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113829697-1874698 11E11_rep_C_Equilina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD4_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111944086-1921717 2_H4_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111944086-1921717 2_H4_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/623.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122632307-1867516 05A01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122632307-1867516 05A01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD6_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092216812-1878728 14B04_rep_A_Pivmecillinam_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092216812-1878728 14B04_rep_A_Pivmecillinam_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GG12_01_17108.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD6_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090775/peak/converties targeted/SAD8a-t.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/276.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nanE_#3_P4F6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (nanE_#3_P4F6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125621998-1863051 03C11_rep_D_Tolbutamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125621998-1863051 03C11_rep_D_Tolbutamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/003_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121246108-1879395 14H05_rep_D_Saquinavir_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121246108-1879395 14H05_rep_D_Saquinavir_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210308_AD_12.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_A_pos_IMS1_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/127-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_C5_id_MSn_negative.mzML at line 21
index 320 is out of bounds for axis 0 with size 320
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113854012-1922677 3_E5_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113854012-1922677 3_E5_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_F_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_B7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8B07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/4c2me_ispE_P3E1_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (4c2me_ispE_P3E1_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/panC_P4D12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (panC_P4D12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145749728-1864011 02A05_rep_A_Moroxidine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145749728-1864011 02A05_rep_A_Moroxidine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_172.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_172.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/421.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_H8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD6_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165713075-2227466 PAT35.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/-ve_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tam_P3D11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (tam_P3D11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122205986-1867301 04G06_rep_D_Bupivacaine_hydrochloride_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122205986-1867301 04G06_rep_D_Bupivacaine_hydrochloride_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD2_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084275/peak/00073_pipeca-T4.mzXML at line 689
Premature end of data in tag peaks line 134, line 134, column 59526 (00073_pipeca-T4.mzXML, line 134)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ2_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_02062001_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_E_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152042403-1576722 Batch1_NCIH2030_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_B9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_B9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100932005-1869221 07E10_rep_A_Mesoridazine_besylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100932005-1869221 07E10_rep_A_Mesoridazine_besylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_D1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD3_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/016_1000uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/10 Sept 2021/converted/210916_tanaka06.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/258.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B5_id_MSn_positive.mzML at line 21
index 482 is out of bounds for axis 0 with size 482
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122749225-1880082 15E07_rep_D_Sparfloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122749225-1880082 15E07_rep_D_Sparfloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200935842-1877705 09C11_rep_B_Irsogladine_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200935842-1877705 09C11_rep_B_Irsogladine_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/854.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092350219-1878801 14B03_rep_A_Iopanoic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092350219-1878801 14B03_rep_A_Iopanoic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H5_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113049069-1874368 11F11_rep_B_Methylhydantoin-5-(L)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113049069-1874368 11F11_rep_B_Methylhydantoin-5-(L)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3C5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3C5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaempferol_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_E10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082728/ccms_peak/ST000661/EX00264-lipidomics/Raw data/POS/20140730_Authentic.mzXML at line 689
error parsing attribute name, line 15906, column 16 (20140730_Authentic.mzXML, line 15906)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111735201-1871629 10D10_rep_B_Methacholine_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111735201-1871629 10D10_rep_B_Methacholine_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc6 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121611149-1879548 15H02_rep_A_Imatiniba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121611149-1879548 15H02_rep_A_Imatiniba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/chbB_#1_P4G1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (chbB_#1_P4G1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GE11_01_11695.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125750162-1863124 04E08_rep_A_Oxybutynin_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125750162-1863124 04E08_rep_A_Oxybutynin_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/298.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007689_032218-5CRP1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNQ766_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_G7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3D07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2C04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V3_LH_PSTII.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152701871-1577028 Batch2_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-qc_elow.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD5_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHF13.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gpt_P3C9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (gpt_P3C9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113324207-1874491 11D04_rep_B_Ifosfamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113324207-1874491 11D04_rep_B_Ifosfamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153538203-1577448 Batch5_HT29_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_E21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GB10_01_17033.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151842658-1576625 Batch7_NCIH209_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/005_CRa_H9M5_M470_Blank_02_low_pos.mzXML at line 689
Premature end of data in tag msRun line 5, line 13649, column 1 (005_CRa_H9M5_M470_Blank_02_low_pos.mzXML, line 13649)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_L7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121252916-1879400 14G02_rep_D_Perindoprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121252916-1879400 14G02_rep_D_Perindoprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152131739-1576761 Batch1_MDAMB436_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpMat1_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ggt_#1_P5C12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (ggt_#1_P5C12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_239.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nikA_P4D9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (nikA_P4D9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/cal_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/833.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1317.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1317.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fabF_P3B4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (fabF_P3B4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_1918_d3_280_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 42380, column 1 (SysVirol_IFT001_1918_d3_280_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 42380)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114635958-1875086 12A09_rep_A_Promethazine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114635958-1875086 12A09_rep_A_Promethazine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GH1_01_16884.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122210448-1879821 15C07_rep_C_Candesartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122210448-1879821 15C07_rep_C_Candesartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yjhH_P3A12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (yjhH_P3A12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153108723-1868447 06D11_rep_B_Epiandrosteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153108723-1868447 06D11_rep_B_Epiandrosteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100752246-1869142 07A02_rep_A_Serotonin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100752246-1869142 07A02_rep_A_Serotonin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113835672-1874703 11B01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113835672-1874703 11B01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L18_id_MSn_negative.mzML at line 21
index 314 is out of bounds for axis 0 with size 314
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-039_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125947399-1877249 13F06_rep_A_Ethamsylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125947399-1877249 13F06_rep_A_Ethamsylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNH099_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114316759-1922911 4_B4_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114316759-1922911 4_B4_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00077322.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J11_id_negative.mzML at line 21
index 268 is out of bounds for axis 0 with size 268
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_B7_id_negative.mzML at line 21
index 256 is out of bounds for axis 0 with size 256
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 2-30191 - GI-17-123.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165845992-2227551 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122944261-1875872 08A09_rep_A_Acarbosea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122944261-1875872 08A09_rep_A_Acarbosea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1H002C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P16_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7A08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Positive_FGF1_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB1B03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Rizobium_sp_OS308Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/citrulline.mzXML at line 689
Premature end of data in tag peaks line 5367, line 5371, column 40428 (citrulline.mzXML, line 5371)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130628723-1877558 13F07_rep_C_Moxonidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130628723-1877558 13F07_rep_C_Moxonidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/735.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200924933-1881691 16G06_rep_A_Ampiroxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200924933-1881691 16G06_rep_A_Ampiroxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/429.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E10_id_MSn_positive.mzML at line 21
index 558 is out of bounds for axis 0 with size 558
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Mycolicibacterium_sp_LYG016B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125451814-1862978 03E07_rep_D_Meclofenamic_acid_sodium_salt_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125451814-1862978 03E07_rep_D_Meclofenamic_acid_sodium_salt_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD4_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L12_id_MSn_positive.mzML at line 21
index 401 is out of bounds for axis 0 with size 401
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150633915-1864899 02C04_rep_C_Cyproheptadine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150633915-1864899 02C04_rep_C_Cyproheptadine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151943423-1867918 05B02_rep_C_Tremorine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151943423-1867918 05B02_rep_C_Tremorine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112044260-1921768 2_E2_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112044260-1921768 2_E2_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_ES118.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/776.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L12_id.mzML at line 21
index 578 is out of bounds for axis 0 with size 578
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125503583-1877030 12D07_rep_D_Nitrendipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125503583-1877030 12D07_rep_D_Nitrendipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_03_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_03_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_C11_id_MSn_positive.mzML at line 21
index 602 is out of bounds for axis 0 with size 602
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150534886-1864854 02B03_rep_C_Zimelidine dihydrochloride monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150534886-1864854 02B03_rep_C_Zimelidine dihydrochloride monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD4_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-007_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/entF_#1_P5H5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (entF_#1_P5H5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/003_Ammonia_Day9_1_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200951943-1881711 16G02_rep_A_Epirubicin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200951943-1881711 16G02_rep_A_Epirubicin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E9_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153600895-1577467 Batch5_HCT116_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170125_024EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ff/2129d2df6c4590fb984896c9b0dca6/input_file/QC_20170125_024EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wecE_#1_P5E11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (wecE_#1_P5E11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112157951-1921832 3_D5_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112157951-1921832 3_D5_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122743049-1875777 08C02_rep_A_Reboxetine_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122743049-1875777 08C02_rep_A_Reboxetine_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084450/raw/Golden-GNPS.mzXML at line 689
AttValue: ' expected, line 22260, column 36 (Golden-GNPS.mzXML, line 22260)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114928032-1875223 12D09_rep_B_Nimodipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114928032-1875223 12D09_rep_B_Nimodipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O9_id_MSn_negative.mzML at line 21
index 280 is out of bounds for axis 0 with size 280
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/BAT_raw files/Lumos_ISAS_BAT_QC3.mzML at line 689
Premature end of data in tag spectrumList line 92, line 91425, column 1 (Lumos_ISAS_BAT_QC3.mzML, line 91425)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mazG_P5F6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (mazG_P5F6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A4_id_MSn_positive.mzML at line 21
index 657 is out of bounds for axis 0 with size 657
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_A15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150956233-1924687 3_E4_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150956233-1924687 3_E4_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD3_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d3_295_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 42786, column 1 (SysVirol_IFT001_Cal04RG_d3_295_lipid_Pos_Gimli_11Sep13_13-07-01.mzXML, line 42786)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092315760-1878774 14G09_rep_A_Mephenytoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092315760-1878774 14G09_rep_A_Mephenytoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113137916-1874406 11F09_rep_B_Doxazosin_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113137916-1874406 11F09_rep_B_Doxazosin_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111806991-1921634 2_G10_GAP1_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111806991-1921634 2_G10_GAP1_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA26.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-qc_low (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample232.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrdA_P4B12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (nrdA_P4B12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1020.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MSA04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHD03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153732013-1868751 06B09_rep_C_Biotinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153732013-1868751 06B09_rep_C_Biotinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc063_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc063_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/202-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100913942-1869207 07D05_rep_A_Pyrazinamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100913942-1869207 07D05_rep_A_Pyrazinamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30133 - GI-16-370.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C9_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dtpC_P3D7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (dtpC_P3D7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_O8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165756705-2227506 PAT48.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_ehigh.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152222413-1576801 Batch2_NCIH441_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111627362-1871576 10B01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111627362-1871576 10B01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_A3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180824_ES_H3K_batch10_repC_146.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153818219-1868788 06H02_rep_C_Vatalaniba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153818219-1868788 06H02_rep_C_Vatalaniba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165849120-2227554 PAT43.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088606/ccms_peak/210116_AR_01_DMSO_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153623194-1868695 06D09_rep_C_Doxorubicin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153623194-1868695 06D09_rep_C_Doxorubicin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_E1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_QC_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092739575-1878979 14D05_rep_B_Cyproterone_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092739575-1878979 14D05_rep_B_Cyproterone_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092615569-1878914 14H06_rep_B_Ronidazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092615569-1878914 14H06_rep_B_Ronidazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/tre_treF_P4A4_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024911 (tre_treF_P4A4_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123735698-1876249 08G07_rep_C_Racecadotrilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123735698-1876249 08G07_rep_C_Racecadotrilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_3mM_L_AC_AS.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_3mM_L_AC_AS.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_F_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_G4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114159676-1922842 4_D9_STE2_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114159676-1922842 4_D9_STE2_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH24.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102001542-1869726 07A05_rep_D_Benperidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102001542-1869726 07A05_rep_D_Benperidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_64_CNR_47.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_64_CNR_47.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122539036-1879981 15G06_rep_C_Racepinephrine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122539036-1879981 15G06_rep_C_Racepinephrine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152621431-1576994 Batch1_CALU3_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_B5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202114510-1878225 09D08_rep_D_Thiamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202114510-1878225 09D08_rep_D_Thiamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124307999-1862299 03C05_rep_A_Methocarbamola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124307999-1862299 03C05_rep_A_Methocarbamola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B01P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD3_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/entB_P5G8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (entB_P5G8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_0126_190128105150.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112832455-1874267 11C09_rep_A_Viloxazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112832455-1874267 11C09_rep_A_Viloxazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_G12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_70.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_70.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151421988-1576409 Batch7_NCIH1734_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/384.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125257346-1862885 03C01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125257346-1862885 03C01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092836308-1879023 14B10_rep_B_Propoxycaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092836308-1879023 14B10_rep_B_Propoxycaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_115_1A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Pos/P4.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223748612-1870281 01E07_rep_C_Naphazoline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223748612-1870281 01E07_rep_C_Naphazoline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD4_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_H6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125914025-1877223 13H04_rep_A_Nomegestrol_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125914025-1877223 13H04_rep_A_Nomegestrol_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112828971-1922175 4_C3_WT_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112828971-1922175 4_C3_WT_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152223612-1576802 Batch2_T47D_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/31-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089617/ccms_peak/HR_Control_Replicate1_20210102033054.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202201147-1878262 10C03_rep_A_Sulfamethizolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202201147-1878262 10C03_rep_A_Sulfamethizolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094443/raw/All Egg Mass/1B1E_MSMS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_E8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M22_id_MSn_positive_20240503132422.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C3_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_67_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_67_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_107a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114330127-1874941 12D02_rep_A_(+)-Isoproterenol_(+)-bitartrate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114330127-1874941 12D02_rep_A_(+)-Isoproterenol_(+)-bitartrate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112606174-1922049 4_H9_GPR1_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112606174-1922049 4_H9_GPR1_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130018225-1863247 04B01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130018225-1863247 04B01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124705241-1876702 09H01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124705241-1876702 09H01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151450180-1924940 4_G9_SNF3_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151450180-1924940 4_G9_SNF3_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101501331-1869484 07D07_rep_C_Lovastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101501331-1869484 07D07_rep_C_Lovastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_86.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_86.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col1_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH69.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153745969-1868762 06H04_rep_C_Cefotetana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153745969-1868762 06H04_rep_C_Cefotetana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170125_067EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/de/a3916c0ddca9aaa2df70bcf7729b4c/input_file/SH7_20170125_067EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130130179-1877325 13G08_rep_B_Tocainide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130130179-1877325 13G08_rep_B_Tocainide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C3_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_01_blood_control_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_01_blood_control_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124327075-1862314 03D09_rep_A_Salbutamolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124327075-1862314 03D09_rep_A_Salbutamolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/36-4_MsMs_25min_30eV_GE4_01_4129.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201753404-1878070 09E11_rep_D_Irinotecan_hydrochloride_trihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201753404-1878070 09E11_rep_D_Irinotecan_hydrochloride_trihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113259750-1922369 1_B10_IZH2_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113259750-1922369 1_B10_IZH2_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_58.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085507/ccms_peak/raw/F20200315sunr_COVID_b4_4.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (F20200315sunr_COVID_b4_4.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081750.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1E05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_89.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090775/peak/converties targeted/SAE6c-t.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151439734-1576424 Batch6_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/25_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J7_id_MSn_positive.mzML at line 21
index 670 is out of bounds for axis 0 with size 670
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/puuC_P5C11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (puuC_P5C11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130042305-1877288 13A10_rep_A_Darifenacin_hydrobromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130042305-1877288 13A10_rep_A_Darifenacin_hydrobromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152228615-1576806 Batch2_T47D_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/026_CRa_H9M5_M470_H03_K2_high_pos.mzXML at line 689
Premature end of data in tag peaks line 18659, line 18663, column 11765 (026_CRa_H9M5_M470_H03_K2_high_pos.mzXML, line 18663)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_157.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ccmB_P3F8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (ccmB_P3F8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_A4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C11_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082718/ccms_peak/peak/ST000666/EX00376-lipidomics/Raw data/NEG/20141119_Authentic.mzXML at line 689
Unescaped '<' not allowed in attributes values, line 762, column 1977 (20141119_Authentic.mzXML, line 762)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125045470-1862779 03D04_rep_C_Oxolinic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125045470-1862779 03D04_rep_C_Oxolinic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B5_id_MSn_positive.mzML at line 21
index 465 is out of bounds for axis 0 with size 465
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152527042-1576949 Batch1_NCIH1838_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_12_RIN_30.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_12_RIN_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190128_ES_H3K_batch15_repB_217.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_98.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B21_id_MSn_negative.mzML at line 21
index 264 is out of bounds for axis 0 with size 264
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125942022-1863218 04D06_rep_A_Fenofibratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125942022-1863218 04D06_rep_A_Fenofibratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114156585-1874865 11D10_rep_D_Ganciclovirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114156585-1874865 11D10_rep_D_Ganciclovirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153417029-1577382 Batch4_MDAMB435S_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_061_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1T3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1T3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_19040322_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101741184-1869612 07F11_rep_C_Clorsulonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101741184-1869612 07F11_rep_C_Clorsulonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113649830-1874618 11E04_rep_C_Nafcillin_sodium_salt_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113649830-1874618 11E04_rep_C_Nafcillin_sodium_salt_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201220_LKM_10to1_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_67.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_E9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089114/peak/mzxml/pooled_QC_20220221221029.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_12_Dorsal_skin_Ma_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 93 (Mouse_12_Dorsal_skin_Ma_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_84.mzXML at line 689
Premature end of data in tag peaks line 30928, line 30932, column 15939 (20121114_84.mzXML, line 30932)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_O7_id_MSn_negative.mzML at line 21
index 335 is out of bounds for axis 0 with size 335
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tonB_P4B5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (tonB_P4B5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152009141-1867939 05E11_rep_C_Benzbromaroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152009141-1867939 05E11_rep_C_Benzbromaroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/guanine_neg.mzXML at line 689
Premature end of data in tag peaks line 7327, line 7331, column 28138 (guanine_neg.mzXML, line 7331)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GB7_01_17154.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113757138-1922627 3_E3_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113757138-1922627 3_E3_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S89.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S89.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122601320-1867491 05C06_rep_A_Clenbuterol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122601320-1867491 05C06_rep_A_Clenbuterol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152041369-1867965 05C03_rep_C_Methapyrilene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152041369-1867965 05C03_rep_C_Methapyrilene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_O8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ4_5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112424533-1874070 10F07_rep_D_Guaifenesina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112424533-1874070 10F07_rep_D_Guaifenesina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123940455-1876349 08B04_rep_D_Troglitazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123940455-1876349 08B04_rep_D_Troglitazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124545892-1876640 09G10_rep_A_Trioxsalena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124545892-1876640 09G10_rep_A_Trioxsalena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_210.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152749255-1868295 06D11_rep_A_Epiandrosteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152749255-1868295 06D11_rep_A_Epiandrosteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc056_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc056_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/menI_#2_P4B3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (menI_#2_P4B3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151845001-1576627 Batch7_NCIH2444_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/410.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person07_blood_elder_POS.mzXML at line 689
attributes construct error, line 41, column 101 (Person07_blood_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091743288-1878513 13A09_rep_D_Decamethonium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091743288-1878513 13A09_rep_D_Decamethonium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153057498-1577221 Batch3_SCABER_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Penicillium_roqueforti_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoG_P3C9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (nuoG_P3C9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112404420-1874054 10F04_rep_D_Norgestrel-(-)-Da.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112404420-1874054 10F04_rep_D_Norgestrel-(-)-Da.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180417_ES_H3K_batch6_repA_97.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wbbI_#1_P4C10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (wbbI_#1_P4C10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201207936-1877816 09E11_rep_B_Irinotecan_hydrochloride_trihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201207936-1877816 09E11_rep_B_Irinotecan_hydrochloride_trihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_J20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100650623-1869092 07B05_rep_A_Propylthiouracilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100650623-1869092 07B05_rep_A_Propylthiouracilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_male_2022_1017_Michael_neg-0011.mzML at line 689
Premature end of data in tag binary line 8079, line 8079, column 191362 (pooled_male_2022_1017_Michael_neg-0011.mzML, line 8079)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092433106-1878834 14G10_rep_A_Rifabutina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092433106-1878834 14G10_rep_A_Rifabutina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_C3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM5A018.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000088438/updates/2021-12-07_gbass_63710cd1/raw/timsconvert_test_2021DEC07/ms1/rs17e_1mgml_1_10_1_1206.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200920592-1877694 09E08_rep_B_Tramadol_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200920592-1877694 09E08_rep_B_Tramadol_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_J5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190128_ES_H3K_batch15_repB_219.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_D4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ytfQ_P4B11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (ytfQ_P4B11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mdh_P5G7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (mdh_P5G7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_D10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_D10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151526702-1576462 Batch7_HARA_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130008832-1863240 04H09_rep_A_Quinacrine_dihydrochloride_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130008832-1863240 04H09_rep_A_Quinacrine_dihydrochloride_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121643776-1867045 04G04_rep_B_Telenzepine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121643776-1867045 04G04_rep_B_Telenzepine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ6_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120906588-1879230 14F01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120906588-1879230 14F01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAJ08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_58.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153627177-1577489 Batch4_184A1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNX435_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hisB_P4E10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (hisB_P4E10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151311271-1924855 3_B5_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151311271-1924855 3_B5_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100138208-1868845 06C08_rep_D_Dibenzepine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100138208-1868845 06C08_rep_D_Dibenzepine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_65.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_03_leg_muscle_control_oral_POS.mzXML at line 689
attributes construct error, line 38, column 97 (Mouse_03_leg_muscle_control_oral_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124131480-1876437 08H04_rep_D_Thiorphanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124131480-1876437 08H04_rep_D_Thiorphanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD2_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ1_4 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150733026-1864945 02C03_rep_C_Amoxapineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150733026-1864945 02C03_rep_C_Amoxapineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113722289-1922597 3_F9_STE2_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113722289-1922597 3_F9_STE2_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ12121406.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223104363-1869973 01H01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223104363-1869973 01H01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121328962-1866896 04G08_rep_B_Oxytetracycline_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121328962-1866896 04G08_rep_B_Oxytetracycline_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD2_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151700357-1925045 4_A8_SNF3_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151700357-1925045 4_A8_SNF3_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D2_preFOS_1_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S3cells_2_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_P_E3E3_AD_02Feb18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_A5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087069/ccms_peak/BRB Liquid Convert pos/BBR_R17500_N40_I10e4_E30_pos_06292020.mzML at line 689
Premature end of data in tag binary line 288389, line 288389, column 190518 (BBR_R17500_N40_I10e4_E30_pos_06292020.mzML, line 288389)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201550407-1881976 16H06_rep_C_Valsartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201550407-1881976 16H06_rep_C_Valsartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124438660-1862371 03B10_rep_A_Phenformin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124438660-1862371 03B10_rep_A_Phenformin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200904631-1881676 16C08_rep_A_Algestone_acetophenideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200904631-1881676 16C08_rep_A_Algestone_acetophenideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121442247-1879482 15H03_rep_A_Moxifloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121442247-1879482 15H03_rep_A_Moxifloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153244844-1868522 06B05_rep_B_Amlodipinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153244844-1868522 06B05_rep_B_Amlodipinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123113693-1867737 05D10_rep_B_Dextromethorphan_hydrobromide_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123113693-1867737 05D10_rep_B_Dextromethorphan_hydrobromide_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121556097-1867008 04B02_rep_B_Chlorothiazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121556097-1867008 04B02_rep_B_Chlorothiazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyaA_#2_P4G5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (hyaA_#2_P4G5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092744/ccms_peak/WT_CoQ6_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112053266-1873036 10A11_rep_C_Balsalazide_Sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112053266-1873036 10A11_rep_C_Balsalazide_Sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150548172-1864864 02H07_rep_C_Ivermectina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150548172-1864864 02H07_rep_C_Ivermectina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dsbD_P3A2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (dsbD_P3A2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/023_CRa_H9M5_M470_Pool_04_high_pos.mzXML at line 689
Premature end of data in tag peaks line 19761, line 19765, column 15862 (023_CRa_H9M5_M470_Pool_04_high_pos.mzXML, line 19765)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145553274-1863917 02B06_rep_A_Lynestrenola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145553274-1863917 02B06_rep_A_Lynestrenola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P6_id.mzML at line 21
index 562 is out of bounds for axis 0 with size 562
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fucK_#3_P5D9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (fucK_#3_P5D9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_61.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151119817-1924759 3_G8_SNF3_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151119817-1924759 3_G8_SNF3_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample008_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202222778-1882280 16H10_rep_D_Desonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202222778-1882280 16H10_rep_D_Desonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_A4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2F03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysG_P4A2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (cysG_P4A2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086175/ccms_peak/peak/Lab2/Neg/N11.mzML at line 591
'scanList'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_1_P_rep_1_B-C9_1_5661.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/blank_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ldtC_#2_P4H1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (ldtC_#2_P4H1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151556592-1924991 4_B1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151556592-1924991 4_B1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_141.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210325_AD_94.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/f6p-tag6pD_pfkA_P6D7_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (f6p-tag6pD_pfkA_P6D7_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085122/peak/26.mzXML at line 689
Opening and ending tag mismatch: scan line 20021 and peaks, line 20036, column 137885 (26.mzXML, line 20036)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132936813-1733913 1fb Skin 1 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082768/ccms_peak/raw/MTBLS31/012511flubatch2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082768/ccms_peak/raw/MTBLS31/012511flubatch2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_C5_id_negative.mzML at line 21
index 168 is out of bounds for axis 0 with size 168
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153556104-1577463 Batch4_184A1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case120_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case120_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-119_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/Blank_80.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152622575-1576995 Batch1_CALU3_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1K008.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_G11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121955285-1867196 04H11_rep_C_Fluphenazine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121955285-1867196 04H11_rep_C_Fluphenazine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122423936-1879923 15D02_rep_C_5-fluorouracilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122423936-1879923 15D02_rep_C_5-fluorouracilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088872/raw/AFN12.mzXML at line 689
Opening and ending tag mismatch: peaks line 66458 and scan, line 66472, column 12 (AFN12.mzXML, line 66472)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR13h3a.mzML at line 689
Opening and ending tag mismatch: binary line 97342 and spectrum, line 97368, column 20 (pMIBSDR13h3a.mzML, line 97368)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170127_058ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/4d/8d09f4a80df516ab5c9c38d54b3979/input_file/MMW3_20170127_058ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_23.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_23.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170125_069EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/f5/6d8fc22a43c7dca72f63cdf06d6b1e/input_file/MMW6_20170125_069EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201023268-1881734 16A08_rep_B_Amorolfine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201023268-1881734 16A08_rep_B_Amorolfine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_74.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1005.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224210441-1870483 01A07_rep_D_Isoflupredone acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224210441-1870483 01A07_rep_D_Isoflupredone acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152752317-1577070 Batch2_PC3_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d8_278_lipid_Neg_Gimli_23Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 47210, column 1 (SysVirol_IFL001_1918_d8_278_lipid_Neg_Gimli_23Sep13_13-07-01.mzXML, line 47210)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223922598-2227707 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_109b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR124h1a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121202017-1879362 14H09_rep_D_Cefepime_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121202017-1879362 14H09_rep_D_Cefepime_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/294.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151140619-1576275 Batch5_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_104.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L79cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L79cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152120485-1576752 Batch1_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case99_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case99_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113206245-1922323 1_A9_IZH2_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113206245-1922323 1_A9_IZH2_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153509776-1577425 Batch4_NCIH1563_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151425574-1576412 Batch7_CORL88_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125754861-1863128 04F10_rep_A_Mifepristonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125754861-1863128 04F10_rep_A_Mifepristonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165903883-2227568 Healthy2.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_49_CNR_20.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_49_CNR_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113345578-1874508 11B09_rep_B_Nadolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113345578-1874508 11B09_rep_B_Nadolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125700794-1877120 13G09_rep_A_Benzathine_benzylpenicillinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125700794-1877120 13G09_rep_A_Benzathine_benzylpenicillinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine8cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine8cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case135_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case135_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201250524-1881844 16G11_rep_B_Latanoprostb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201250524-1881844 16G11_rep_B_Latanoprostb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mltF_#1_P4D12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (mltF_#1_P4D12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124354478-1862336 03H08_rep_A_Ofloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124354478-1862336 03H08_rep_A_Ofloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/caiT_P3E12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (caiT_P3E12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bglF_#1_P5B9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (bglF_#1_P5B9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_A12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_I8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087808/raw/RIGHT_SSL_EI_sleep_STER_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1629.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1629.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/cystL_metC_P3G9_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (cystL_metC_P3G9_Aquity_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130617302-1877549 13B10_rep_C_Ozagrel_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130617302-1877549 13B10_rep_C_Ozagrel_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_A4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_18092931_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153544706-1868664 06B02_rep_C_Androsteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153544706-1868664 06B02_rep_C_Androsteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152835948-1577107 Batch5_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170125_046EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/8a/4de820233590a3fe4a505ec4dfae05/input_file/SH8_20170125_046EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151904164-1576643 Batch7_NCIH1693_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2C10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_17121406_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rihA_P4H11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (rihA_P4H11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083383/updates/2019-10-30_allegraaron_e0b9cac9/other/allegraaron/Hui_N1.mzXML at line 689
Premature end of data in tag peaks line 64083, line 64087, column 66473 (Hui_N1.mzXML, line 64087)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Soil_Sample_MetFish/006_Soil_500mMIntra_1_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine71cbz.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine71cbz.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K3_id_negative.mzML at line 21
index 248 is out of bounds for axis 0 with size 248
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151224418-1576311 Batch5_HCC1187_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_313_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample089.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_QC_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009459_IBD200_E7_B10.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/643.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Kaem_18072701_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD6_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/norW_#1_P4F3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (norW_#1_P4F3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/166-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/619.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/477-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_084a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124152709-1876454 08G04_rep_D_Pyridoxine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124152709-1876454 08G04_rep_D_Pyridoxine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/039_43.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152320353-1576847 Batch2_NCIH226_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_19040322_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/033_CRa_H9M5_M470_Pool_05_high_pos.mzXML at line 689
Premature end of data in tag peaks line 19590, line 19594, column 48629 (033_CRa_H9M5_M470_Pool_05_high_pos.mzXML, line 19594)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101429672-1869459 07C09_rep_C_Acenocoumarola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101429672-1869459 07C09_rep_C_Acenocoumarola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_87.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D17_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125348466-1876973 12H04_rep_D_(R)-(+)-Atenolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125348466-1876973 12H04_rep_D_(R)-(+)-Atenolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/645.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080949/ccms_peak/peaks/3samples_sampl2_POS.mzXML at line 689
attributes construct error, line 41, column 77 (3samples_sampl2_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150303250-1924334 1_B10_RGT2_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150303250-1924334 1_B10_RGT2_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091753153-1878521 13B01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091753153-1878521 13B01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223931755-2227715 Healthy3.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHD07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_H8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101020910-1869260 07C01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101020910-1869260 07C01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151235323-1576320 Batch5_PC9_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_H13_id_MSn_negative.mzML at line 21
index 358 is out of bounds for axis 0 with size 358
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124632478-1862577 03C01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124632478-1862577 03C01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_C10_id_negative.mzML at line 21
index 172 is out of bounds for axis 0 with size 172
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/707.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_blank_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N22_id_MSn_negative.mzML at line 21
index 333 is out of bounds for axis 0 with size 333
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087048/updates/2021-03-16_trevorclark_f4d681a4/raw/Green_Tea_SFU_mzml/20200319_GreenTea24_R1.mzML at line 689
Premature end of data in tag binary line 84977, line 84977, column 61054 (20200319_GreenTea24_R1.mzML, line 84977)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130744331-1877618 13F11_rep_C_Rimexoloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130744331-1877618 13F11_rep_C_Rimexoloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d1_293_lipid__Po_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 31299, column 1 (SysVirol_IFL001_1918_d1_293_lipid__Po_Gimli_06Sep13_13-07-01.mzXML, line 31299)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113844362-1874710 11F09_rep_D_Doxazosin_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113844362-1874710 11F09_rep_D_Doxazosin_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalin_19080521_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152826917-1868324 06A05_rep_A_Idebenonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152826917-1868324 06A05_rep_A_Idebenonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091847850-1878565 13F06_rep_D_Ethamsylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091847850-1878565 13F06_rep_D_Ethamsylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_blood_4h_POS.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer4_blood_4h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM4M003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M17_id_MSn_negative.mzML at line 21
index 311 is out of bounds for axis 0 with size 311
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD5_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007557_031618-1CRP6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.gris_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gss_P3G5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (gss_P3G5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dhaM_#1_P5G8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (dhaM_#1_P5G8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD4_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_CABIN_sample02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112001724-1921732 2_B1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112001724-1921732 2_B1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_60.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101015956-1869256 07B07_rep_B_Tiaprofenic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101015956-1869256 07B07_rep_B_Tiaprofenic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153222623-1577289 Batch4_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114106043-1874824 11A04_rep_D_Pyrithyldionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114106043-1874824 11A04_rep_D_Pyrithyldionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_36.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082764/ccms_peak/MTBLS281/raw/MTBLS281/mtab_sponge_tsq_36.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/-ve_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_6_Dorsal_skin_HO_RESV_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_6_Dorsal_skin_HO_RESV_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ5_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112320673-1921904 3_B8_GPR1_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112320673-1921904 3_B8_GPR1_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/528-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlichMO17R224h1a.mzML at line 689
attributes construct error, line 91988, column 163 (pBlichMO17R224h1a.mzML, line 91988)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151015272-1865071 02H10_rep_D_Dihydrostreptomycin sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151015272-1865071 02H10_rep_D_Dihydrostreptomycin sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU47.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw2_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202426839-1878377 10D04_rep_A_Demeclocycline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202426839-1878377 10D04_rep_A_Demeclocycline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125545611-1877062 12B04_rep_D_Felbinacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125545611-1877062 12B04_rep_D_Felbinacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201533687-1877965 09E08_rep_C_Tramadol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201533687-1877965 09E08_rep_C_Tramadol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125917938-1877226 13F02_rep_A_Flucloxacillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125917938-1877226 13F02_rep_A_Flucloxacillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112507931-1921998 3_G9_GPR1_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112507931-1921998 3_G9_GPR1_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH10_20170127_068ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e3/dc2334e0c54fc146b43428f0fc8c72/input_file/SH10_20170127_068ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113100784-1922266 1_A10_IZH2_0_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113100784-1922266 1_A10_IZH2_0_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190127_ES_H3K_batch15_repA_218.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153634460-1577495 Batch4_ASPC1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101704596-1869582 07B08_rep_C_Vancomycin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101704596-1869582 07B08_rep_C_Vancomycin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201934700-1878147 09B10_rep_D_6-Furfurylaminopurineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201934700-1878147 09B10_rep_D_6-Furfurylaminopurineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_131_1A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_I7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151059124-1924741 3_E10_SNF3_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151059124-1924741 3_E10_SNF3_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_L14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210115_AD_6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101505349-1869487 07E04_rep_C_Miglitola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101505349-1869487 07E04_rep_C_Miglitola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153128723-1577246 Batch4_MDAMB435S_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201307742-1877860 09A08_rep_B_Rebamipidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201307742-1877860 09A08_rep_B_Rebamipidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tdcE_P3A5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (tdcE_P3A5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/194-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124155052-1862241 03H07_rep_A_Dilazep_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124155052-1862241 03H07_rep_A_Dilazep_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_N4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092249748-1878754 14B06_rep_A_Piperidolate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092249748-1878754 14B06_rep_A_Piperidolate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F7_id_MSn_negative.mzML at line 21
index 304 is out of bounds for axis 0 with size 304
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIAG06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_H5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/851.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124623561-1876669 09H04_rep_A_Dipyroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124623561-1876669 09H04_rep_A_Dipyroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ7_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111959430-1921730 2_D11_GAP1_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111959430-1921730 2_D11_GAP1_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125051801-1862784 03G07_rep_C_Griseofulvina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125051801-1862784 03G07_rep_C_Griseofulvina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122011525-1879731 15E03_rep_B_Cyclophosphamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122011525-1879731 15E03_rep_B_Cyclophosphamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-elow14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/galE_P4A5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (galE_P4A5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_C5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0023_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125952905-1863227 04B07_rep_A_Isotretinoinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125952905-1863227 04B07_rep_A_Isotretinoinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093140999-1879165 14A03_rep_C_Tridihexethyl_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093140999-1879165 14A03_rep_C_Tridihexethyl_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnL_P4E8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (phnL_P4E8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_E3_id_negative.mzML at line 21
index 254 is out of bounds for axis 0 with size 254
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B14_id_MSn_negative.mzML at line 21
index 298 is out of bounds for axis 0 with size 298
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer2_RBC_0h_POS.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer2_RBC_0h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STY1_40EV_RA2_01_22640.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ1_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130225799-1877368 13E06_rep_B_Apramycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130225799-1877368 13E06_rep_B_Apramycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201928346-1878142 09F11_rep_D_Cefmetazole_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201928346-1878142 09F11_rep_D_Cefmetazole_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121823561-1867124 04C07_rep_C_Disopyramidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121823561-1867124 04C07_rep_C_Disopyramidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153825687-1868794 06C08_rep_C_Dibenzepine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153825687-1868794 06C08_rep_C_Dibenzepine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125623213-1877091 12G03_rep_D_Bretylium_tosylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125623213-1877091 12G03_rep_D_Bretylium_tosylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/20_D24062013T2111_1399CBU_0003_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092921257-1879059 14H05_rep_C_Saquinavir_mesylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092921257-1879059 14H05_rep_C_Saquinavir_mesylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_C3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_G21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093224154-1879200 14E10_rep_C_(S)-(-)-Cycloserinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093224154-1879200 14E10_rep_C_(S)-(-)-Cycloserinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V3_LH.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5H04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_84.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD5_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00077439.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130837083-1877661 13D01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130837083-1877661 13D01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_A5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_A8_id_positive.mzML at line 21
index 319 is out of bounds for axis 0 with size 319
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111615597-1871567 10A06_rep_B_Deferoxamine_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111615597-1871567 10A06_rep_B_Deferoxamine_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR13h1a.mzML at line 689
Opening and ending tag mismatch: binary line 52480 and scan, line 52489, column 20 (pBlateR13h1a.mzML, line 52489)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/A1/CNT371_A1_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153500412-1868629 06A06_rep_C_Pepstatin_Ab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153500412-1868629 06A06_rep_C_Pepstatin_Ab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124758740-1862646 03D09_rep_B_Salbutamola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124758740-1862646 03D09_rep_B_Salbutamola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potF_P3C5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (potF_P3C5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124600834-1862552 03F02_rep_B_Piroxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124600834-1862552 03F02_rep_B_Piroxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114712036-1875114 12G02_rep_B_Pentetic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114712036-1875114 12G02_rep_B_Pentetic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152259566-1868073 05A09_rep_D_Zoxazolamineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152259566-1868073 05A09_rep_D_Zoxazolamineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gatB_#1_P5E1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (gatB_#1_P5E1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086335/ccms_peak/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Diaporthe CarGL-23A/I-1_a.mzML at line 689
Extra content at the end of the document, line 65141, column 1 (I-1_a.mzML, line 65141)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111541643-1921509 1_A3_WT_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111541643-1921509 1_A3_WT_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201829771-1882098 16H01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201829771-1882098 16H01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_19032901_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_05_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Serratia_sp_EB1H004B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_M13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_2_Liver_HO_control_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_2_Liver_HO_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152652151-1868251 06D07_rep_A_Digitoxigeninb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152652151-1868251 06D07_rep_A_Digitoxigeninb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_A22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_81.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dxs_P3B9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (dxs_P3B9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190114_ES_H3K_batch13_repC_192.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD2_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/idnT_P5G5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (idnT_P5G5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD3_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165827332-2227534 PAT38.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123601874-1876175 08G05_rep_C_Mercaptopurineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123601874-1876175 08G05_rep_C_Mercaptopurineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/adeP_P3H2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (adeP_P3H2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202457454-1878401 10F02_rep_A_Alclometasone_dipropionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202457454-1878401 10F02_rep_A_Alclometasone_dipropionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152904125-1577131 Batch5_NCIH2347_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_01_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_01_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153537302-1868658 06D06_rep_C_Cyclosporin_Aa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153537302-1868658 06D06_rep_C_Cyclosporin_Aa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/uraA_P4B3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (uraA_P4B3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_CABIN_PLASMA_longterm_storage_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_H10_id_MSn_negative.mzML at line 21
index 297 is out of bounds for axis 0 with size 297
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153800841-1577567 Batch6_NCIH82_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/amtB_#2_P5A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (amtB_#2_P5A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121115213-1879327 14A03_rep_D_Tridihexethyl_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121115213-1879327 14A03_rep_D_Tridihexethyl_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153227735-1577293 Batch4_CAKI1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/003_Ammonia_Day0_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223819361-2227652 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122946746-1867672 05G06_rep_B_Mitoxantrone_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122946746-1867672 05G06_rep_B_Mitoxantrone_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_A5_id_negative.mzML at line 21
index 198 is out of bounds for axis 0 with size 198
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00072567.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C5_id_negative.mzML at line 21
index 250 is out of bounds for axis 0 with size 250
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30103 - GI-14-297.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151752132-1576583 Batch3_5637_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007653_032118-1Thr2_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2E08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GC11_01_17048.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114909822-1875208 12A10_rep_B_Diacereina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114909822-1875208 12A10_rep_B_Diacereina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dcuA_P3E5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (dcuA_P3E5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_G1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_G1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092826181-1879015 14H11_rep_B_Nadifloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092826181-1879015 14H11_rep_B_Nadifloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/055_57.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_34_RIN_15.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100923_34_RIN_15.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087805/ccms_peak/Media_R5_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_62_CNR_40.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100927_62_CNR_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.grif_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_C10_id_negative.mzML at line 21
index 291 is out of bounds for axis 0 with size 291
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165706504-2227460 Healthy7.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089340/raw/20200306_KBL-AK_GM_504788_Blumenol_Final_QE-HF_C18-CustMog_USDAY48854/raw_data/20200306_KBL-AK_GM_504788_Blumenol_Final_QE-HF_C18-CustMog_USDAY48854_NEG_MSMS_90_Hydro-HeatCop-Root_1_Rg100to800-CE102040-Brachy-S1_Run284.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000089340/raw/20200306_KBL-AK_GM_504788_Blumenol_Final_QE-HF_C18-CustMog_USDAY48854/raw_data/20200306_KBL-AK_GM_504788_Blumenol_Final_QE-HF_C18-CustMog_USDAY48854_NEG_MSMS_90_Hydro-HeatCop-Root_1_Rg100to800-CE102040-Brachy-S1_Run284.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_E4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/166-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111805848-1921633 2_F10_GAP1_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111805848-1921633 2_F10_GAP1_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092427979-1878830 14B09_rep_A_Ondansetron_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092427979-1878830 14B09_rep_A_Ondansetron_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1127.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1127.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100951263-1869236 07E01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100951263-1869236 07E01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glmU_P3A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (glmU_P3A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_92.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G1_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD073_P1-A-2_01_2381.mzML at line 689
Opening and ending tag mismatch: binary line 67986 and isolationWindow, line 67987, column 33 (CD073_P1-A-2_01_2381.mzML, line 67987)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/cystathionine_neg.mzXML at line 689
Premature end of data in tag peaks line 7407, line 7411, column 52717 (cystathionine_neg.mzXML, line 7411)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GH3_01_16996.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S85.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S85.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152227370-1576805 Batch1_HX147_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152516243-1576940 Batch1_MCF7_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151148914-1924784 3_G5_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151148914-1924784 3_G5_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG17.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C10_id_MSn_negative.mzML at line 21
index 285 is out of bounds for axis 0 with size 285
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nrfA_P3B11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (nrfA_P3B11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/015_CRa_H9M5_M470_H14_K2_low_pos.mzXML at line 689
Premature end of data in tag peaks line 17063, line 17067, column 36344 (015_CRa_H9M5_M470_H14_K2_low_pos.mzXML, line 17067)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_blank_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STE2_30EV_RA4_01_22573.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125230025-1876913 12F03_rep_C_S(-)Eticlopride_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125230025-1876913 12F03_rep_C_S(-)Eticlopride_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111528162-1921497 1_B8_GAP1_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111528162-1921497 1_B8_GAP1_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S80.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S80.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S01_0126_190128174705.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mhpC_P3H11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (mhpC_P3H11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/001_Nitrate_Day14_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNT318_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/420.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD1_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153054622-1868436 06H04_rep_B_Cefotetana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153054622-1868436 06H04_rep_B_Cefotetana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybbW_#2_P4C3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (ybbW_#2_P4C3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OW3.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007670_032118-1CRP1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case196_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case196_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112730536-1922123 4_G5_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112730536-1922123 4_G5_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_QC_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD6_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_73.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150902906-1865015 02G04_rep_D_Chlorhexidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150902906-1865015 02G04_rep_D_Chlorhexidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112051943-1873035 10C08_rep_C_Aprepitantb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112051943-1873035 10C08_rep_C_Aprepitantb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc037_neg.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc037_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121451709-1879489 15E09_rep_A_Clarithromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121451709-1879489 15E09_rep_A_Clarithromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C9_id_negative.mzML at line 21
index 254 is out of bounds for axis 0 with size 254
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152428544-1576901 Batch1_NCIH1437_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyfB_P3A6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (hyfB_P3A6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113011914-1874343 11G06_rep_B_Simvastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113011914-1874343 11G06_rep_B_Simvastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pgl_#2_P5D1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (pgl_#2_P5D1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101713415-1869589 07G10_rep_C_Trimetazidine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101713415-1869589 07G10_rep_C_Trimetazidine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122940488-1867667 05A11_rep_B_Bisoprolol_fumarateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122940488-1867667 05A11_rep_B_Bisoprolol_fumarateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100834048-1869175 07H05_rep_A_Tolazamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100834048-1869175 07H05_rep_A_Tolazamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_12_Liver_Ma_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 87 (Mouse_12_Liver_Ma_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-070_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/3_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125020982-1876817 12E03_rep_C_Thioperamide_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125020982-1876817 12E03_rep_C_Thioperamide_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GC12_01_16943.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_73.mzXML at line 689
Premature end of data in tag peaks line 19555, line 19559, column 3655 (20121114_73.mzXML, line 19559)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085103/updates/2020-03-14_allegraaron_d321bd98/peak/mzML/JB-182_100um.mzML at line 689
Premature end of data in tag binary line 220233, line 220233, column 10753 (JB-182_100um.mzML, line 220233)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-high4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080949/ccms_peak/peaks/3samples_sampl1_NEG.mzXML at line 689
attributes construct error, line 41, column 77 (3samples_sampl1_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_G_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151447825-1924938 4_A7_SNF3_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151447825-1924938 4_A7_SNF3_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180915_ES_H3K_batch2_repA_32.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_103.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_sp_WIAI04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sdaA_#2_P5F5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (sdaA_#2_P5F5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224004760-1870386 01G01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224004760-1870386 01G01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A14_id_MSn_positive.mzML at line 21
index 631 is out of bounds for axis 0 with size 631
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007663_032118-1Thr6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121327129-1879425 15C04_rep_A_Cefdinirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121327129-1879425 15C04_rep_A_Cefdinirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152011839-1576698 Batch1_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_15102011_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I10_id_negative.mzML at line 21
index 244 is out of bounds for axis 0 with size 244
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-008_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114544713-1875047 12H10_rep_A_Proparacaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114544713-1875047 12H10_rep_A_Proparacaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1769.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1769.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/307.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_139.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_139.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_89.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122602561-1867492 05F08_rep_A_Nafronyl_oxalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122602561-1867492 05F08_rep_A_Nafronyl_oxalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113014849-1874345 11G04_rep_B_Ciclesonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113014849-1874345 11G04_rep_B_Ciclesonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123843277-1876303 08D11_rep_C_Zopicloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123843277-1876303 08D11_rep_C_Zopicloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145911994-1864077 02A07_rep_A_Acyclovira.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145911994-1864077 02A07_rep_A_Acyclovira.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fdnH_P3H4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (fdnH_P3H4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_5_P_rep_2_B-F2_1_5555.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G8_id_MSn_positive.mzML at line 21
index 404 is out of bounds for axis 0 with size 404
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114434756-1874994 12D08_rep_A_Flurbiprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114434756-1874994 12D08_rep_A_Flurbiprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_41.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_41.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_G5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/CNS615_R5_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165709827-2227463 PAT51.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_L9_id_MSn_negative.mzML at line 21
index 336 is out of bounds for axis 0 with size 336
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_181.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6F02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIAI09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_C3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_186.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_186.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_60_CNR_40.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_60_CNR_40.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101824904-1869648 07H05_rep_D_Tolazamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101824904-1869648 07H05_rep_D_Tolazamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124716268-1876711 09H05_rep_A_Isosorbide_dinitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124716268-1876711 09H05_rep_A_Isosorbide_dinitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/424.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_I7_id_MSn_positive.mzML at line 21
index 508 is out of bounds for axis 0 with size 508
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EBM006C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201744382-1878063 09H08_rep_C_Finasterideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201744382-1878063 09H08_rep_C_Finasterideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092756626-1878992 14H05_rep_B_Saquinavir_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092756626-1878992 14H05_rep_B_Saquinavir_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_blank_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD4_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200736859-1881612 16G11_rep_A_Latanoprostb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200736859-1881612 16G11_rep_A_Latanoprostb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample014.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152512942-1868174 05H03_rep_D_Ketanserin_tartrate_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152512942-1868174 05H03_rep_D_Ketanserin_tartrate_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190338171-1889800 NNa.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_93.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095588/raw/Linearity_Publication/961_C12onlyDiluted_Replicate3_Level1_MSMS_neg.mzML at line 644
'selected ion m/z'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD1_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person3_Plasma_POS.mzXML at line 689
attributes construct error, line 38, column 74 (Person3_Plasma_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C5_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E19_id_MSn_negative.mzML at line 21
index 266 is out of bounds for axis 0 with size 266
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/panC_P4D12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (panC_P4D12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124125136-1876432 08F03_rep_D_Fenipentola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124125136-1876432 08F03_rep_D_Fenipentola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_G10_id_positive.mzML at line 21
index 347 is out of bounds for axis 0 with size 347
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112714879-1922109 4_D2_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112714879-1922109 4_D2_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnP_P4H8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (phnP_P4H8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201939783-1882153 16A01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201939783-1882153 16A01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/45-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170127_043ENLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/99/f74adf806433f458ffb938fe26f1b3/input_file/SH7_20170127_043ENLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223213195-1870025 01E04_rep_B_Betazole hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223213195-1870025 01E04_rep_B_Betazole hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130715022-1877595 13G06_rep_C_Letrozolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130715022-1877595 13G06_rep_C_Letrozolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130521832-1877505 13H02_rep_C_Halofantrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130521832-1877505 13H02_rep_C_Halofantrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_H1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_H1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093272/raw/20181217_KBL_TM_C18_Lakes_Geodes-Mendota_REDO/rawdata/20181217_KBL_TM_Lakes_Mendota_DepthDate_QE-HF_C18_USDAY46918_NEG_MSMS_6_ME-20170811-metabo-6_1_Rg80to1200-CE102040-10p3-S1_Run31.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000093272/raw/20181217_KBL_TM_C18_Lakes_Geodes-Mendota_REDO/rawdata/20181217_KBL_TM_Lakes_Mendota_DepthDate_QE-HF_C18_USDAY46918_NEG_MSMS_6_ME-20170811-metabo-6_1_Rg80to1200-CE102040-10p3-S1_Run31.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152048584-1576727 Batch1_UMUC3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glgX_P4H2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (glgX_P4H2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081770.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_I11_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3T2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3T2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike1_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007649_032118-1Thr1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.co_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122027255-1879743 15D11_rep_B_Lamotrigineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122027255-1879743 15D11_rep_B_Lamotrigineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_STD4_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223711017-1870252 01B01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223711017-1870252 01B01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N17_id_negative.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151324395-1576361 Batch7_SUM149PT_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_49.mzXML at line 689
Premature end of data in tag msRun line 5, line 18813, column 1 (20121114_49.mzXML, line 18813)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/-ve_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_C11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153753312-1868768 06F02_rep_C_Alizapride_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153753312-1868768 06F02_rep_C_Alizapride_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/435.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_high (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I12_id_MSn_negative.mzML at line 21
index 331 is out of bounds for axis 0 with size 331
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybbO_#1_P4G10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (ybbO_#1_P4G10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_E11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/368.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_15102101_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223331392-1870084 01F06_rep_B_Acetohexamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223331392-1870084 01F06_rep_B_Acetohexamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152724687-1577047 Batch2_OVCAR3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1100.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007570_031718-5CRP2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190129_ES_H3K_batch15_repA_187.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094756/peak/02_TO_mPlasma_CROT_main_TOP_pos_MidNorm.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_QC_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_A_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125730979-1863108 03D06_rep_D_Asenapine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125730979-1863108 03D06_rep_D_Asenapine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-4-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_D6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152736702-1577057 Batch2_IGROV1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152256314-1576828 Batch2_NCIH460_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090213/ccms_peak/9March2022_028_VH BK Trang 10x_neg 3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_119.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082795/ccms_peak/raw/MTBLS428/mtab_VentDOM_tsq_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082795/ccms_peak/raw/MTBLS428/mtab_VentDOM_tsq_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/006_Ammonia_Day7_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122906292-1880143 15A05_rep_D_Sulbactamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122906292-1880143 15A05_rep_D_Sulbactamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121328506-1879426 15D10_rep_A_Anthralina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121328506-1879426 15D10_rep_A_Anthralina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088741/ccms_peak/QLTMS2_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111713743-1871612 10E05_rep_B_Furaltadone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111713743-1871612 10E05_rep_B_Furaltadone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Rhodococcus_LYG002B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-7-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202556439-1878447 10D03_rep_A_Phenazopyridine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202556439-1878447 10D03_rep_A_Phenazopyridine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD1_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130657778-1877581 13H05_rep_C_Pancuronium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130657778-1877581 13H05_rep_C_Pancuronium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/gua_guaD_P4G6_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 634, column 10031515 (gua_guaD_P4G6_Aquity_pos.mzXML, line 634)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_E16_id_MSn_positive.mzML at line 21
index 396 is out of bounds for axis 0 with size 396
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223648661-1870235 01E02_rep_C_Procaine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223648661-1870235 01E02_rep_C_Procaine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165737938-2227489 PAT33.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8F05.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170207_019EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/51/ff11cf76a7a19d30f96dfc54868a95/input_file/MMW4_20170207_019EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086335/ccms_peak/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Arroz - MSConvert/12Apos.mzML at line 689
Unescaped '<' not allowed in attributes values, line 21604, column 8285 (12Apos.mzML, line 21604)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222938379-1869909 01A05_rep_A_Metformin hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222938379-1869909 01A05_rep_A_Metformin hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151057431-1865104 02D10_rep_D_Picotamide monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151057431-1865104 02D10_rep_D_Picotamide monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113911917-1874732 11H06_rep_D_Reserpinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113911917-1874732 11H06_rep_D_Reserpinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152859010-1868349 06B05_rep_A_Amlodipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152859010-1868349 06B05_rep_A_Amlodipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_G_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/oppB_P4B5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (oppB_P4B5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person21_plasma_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person21_plasma_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/004_Nitrate_Day17_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009467_IBD200_E8_B4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_5_B_rep_4_B-E9_1_5681.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201002773-1877725 09E03_rep_B_Secnidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201002773-1877725 09E03_rep_B_Secnidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/16FEB2021 Column3_test_006.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_A15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ7_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_B2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample151.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151652365-1576534 Batch7_SKMES1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_70_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_77.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person06_plasma_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person06_plasma_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095819/raw/202312_210_PA04_10ppb_1uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_P17_id_MSn_positive.mzML at line 21
index 682 is out of bounds for axis 0 with size 682
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092023871-1878640 13G09_rep_D_Benzathine_benzylpenicillina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092023871-1878640 13G09_rep_D_Benzathine_benzylpenicillina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_E4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_E4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample175.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hcaB_P3B10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (hcaB_P3B10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-cc3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_018ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/31/47101fd1a8693267a57214da07cb3a/input_file/QC_20170127_018ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165922361-2227585 PAT45.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_E7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132943354-1733918 blankb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150332174-1864759 02H08_rep_B_Gallamine triethiodideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150332174-1864759 02H08_rep_B_Gallamine triethiodideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165804140-2227513 pooled.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202111261-1882224 16C06_rep_D_Nateglinideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202111261-1882224 16C06_rep_D_Nateglinideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_D8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123527835-1876148 08G02_rep_C_Mizolastinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123527835-1876148 08G02_rep_C_Mizolastinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121542793-1879526 15D03_rep_A_Mesnaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121542793-1879526 15D03_rep_A_Mesnaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_D2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_E19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093216650-1879194 14D11_rep_C_Methiazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093216650-1879194 14D11_rep_C_Methiazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121319199-1879419 15B06_rep_A_Amcinonideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121319199-1879419 15B06_rep_A_Amcinonideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151731877-1576567 Batch4_HPAC_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_91.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/001_Nitrate_Day9_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114405394-1874970 12A03_rep_A_Bemegridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114405394-1874970 12A03_rep_A_Bemegridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8C16.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/020_CRa_H9M5_M470_C14_K3_high_pos.mzXML at line 689
Premature end of data in tag msRun line 5, line 19520, column 1 (020_CRa_H9M5_M470_C14_K3_high_pos.mzXML, line 19520)
Error processing file: /data/datasets/server/MassIVE/MSV000092221/ccms_peak/LuxWater_2019-2022/2020/May/LUX_SW_pos_03215.mzML at line 21
index 688 is out of bounds for axis 0 with size 688
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH56.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_134a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc6 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_80.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153336394-1577349 Batch4_NCIH1666_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112418301-1874065 10C01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112418301-1874065 10C01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121520112-1866980 04F06_rep_B_Pergolide_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121520112-1866980 04F06_rep_B_Pergolide_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080963/ccms_peak/peaks/Person4_RBC1_NEG.mzXML at line 689
attributes construct error, line 38, column 72 (Person4_RBC1_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_D8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101720521-1869595 07E06_rep_C_Rifampicina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101720521-1869595 07E06_rep_C_Rifampicina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlich1001R37_5h2a.mzML at line 689
Specification mandates value for attribute gT, line 268694, column 60 (pBlich1001R37_5h2a.mzML, line 268694)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150845526-1924626 2_D3_WT_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150845526-1924626 2_D3_WT_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GE4_01_16835.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_C5_id_MSn_positive.mzML at line 21
index 705 is out of bounds for axis 0 with size 705
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153629609-1577491 Batch4_PANC0813_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153642921-1577502 Batch5_NCIH1792_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124850159-1876749 12G08_rep_C_Prazosin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124850159-1876749 12G08_rep_C_Prazosin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ppa_P3B1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (ppa_P3B1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007658_032118-1Thr4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case138_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case138_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092642179-1878935 14A01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092642179-1878935 14A01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200604252-1881543 16B05_rep_A_Tegaserod_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200604252-1881543 16B05_rep_A_Tegaserod_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_71.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E13_id_MSn_positive.mzML at line 21
index 591 is out of bounds for axis 0 with size 591
Error processing file: /data/datasets/server/MassIVE/MSV000078552/ccms_peak/Bacillus/Bacillus_LS28_2.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151344658-1576378 Batch6_NCIH2171_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_blank_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223457748-1870150 01H09_rep_B_Thioridazine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223457748-1870150 01H09_rep_B_Thioridazine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_09_Blank.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_09_Blank.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C8_id_MSn_negative.mzML at line 21
index 293 is out of bounds for axis 0 with size 293
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092816089-1879007 14B05_rep_B_Levopropoxyphene_napsylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092816089-1879007 14B05_rep_B_Levopropoxyphene_napsylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2C05P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100809643-1869156 07D07_rep_A_Lovastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100809643-1869156 07D07_rep_A_Lovastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080916/ccms_peak/peaks/C48_III_ESI+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD2_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argK_#1_P4G11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (argK_#1_P4G11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1068.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/004_Nitrate_Day2_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_K12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007484_031618-STD ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M13_id_MSn_positive.mzML at line 21
index 552 is out of bounds for axis 0 with size 552
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1555.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1555.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNT302_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153349899-1868573 06A01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153349899-1868573 06A01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201853302-1878115 09H10_rep_D_Cephalothin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201853302-1878115 09H10_rep_D_Cephalothin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_190.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100142495-1868848 06D04_rep_D_Cyanocobalaminb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100142495-1868848 06D04_rep_D_Cyanocobalaminb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_G3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_F17_id_MSn_negative.mzML at line 21
index 313 is out of bounds for axis 0 with size 313
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_K6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_C5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_53.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cdh_P4B10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (cdh_P4B10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_E4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092754/peak/05082023-pos-philic-peaklist/pos_inf_prog_7974_male_30_192_B_E1.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/348.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_06_554_prot_55_IMS_26Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124914281-1876767 12G11_rep_C_Stavudineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124914281-1876767 12G11_rep_C_Stavudineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122258817-1879858 15E08_rep_C_Desloratadinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122258817-1879858 15E08_rep_C_Desloratadinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092720118-1878964 14A04_rep_B_Penbutolol_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092720118-1878964 14A04_rep_B_Penbutolol_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-151_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151452793-1576435 Batch6_NCIH1155_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_127.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180424_ES_H3K_batch6_repA_46.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GF7_01_11535.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123405163-1876081 08H08_rep_B_Levetiracetamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123405163-1876081 08H08_rep_B_Levetiracetamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112142152-1921818 2_F3_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112142152-1921818 2_F3_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/raw/Validation Set 2 JHU/Lipidomics - 230418 - 1-JHU10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145850641-1864060 02D01_rep_A_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145850641-1864060 02D01_rep_A_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc045_neg.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc045_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GB12_01_16801.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_blank_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thrB_P5C10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024987 (thrB_P5C10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111329070-1871440 10A04_rep_B_Phenethicillin_potassium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111329070-1871440 10A04_rep_B_Phenethicillin_potassium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person21_RBC_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 81 (Person21_RBC_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123757211-1876266 08C05_rep_C_Yohimbine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123757211-1876266 08C05_rep_C_Yohimbine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/galP_P4A8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (galP_P4A8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_76.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_D9_id_MSn_positive.mzML at line 21
index 402 is out of bounds for axis 0 with size 402
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person18_blood_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 83 (Person18_blood_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078847/ccms_peak/Extra media/-ve_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150317971-1864748 02B11_rep_B_Nocodazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150317971-1864748 02B11_rep_B_Nocodazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152111489-1576745 Batch1_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113728242-1922602 3_A7_STE2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113728242-1922602 3_A7_STE2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_J9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151854439-1576635 Batch7_M14_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153822078-1577585 Batch6_K562_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C3_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112810984-1874250 11G09_rep_A_Acetaminophena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112810984-1874250 11G09_rep_A_Acetaminophena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_L15_id_MSn_positive.mzML at line 21
index 552 is out of bounds for axis 0 with size 552
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124648715-1876689 09G06_rep_A_Methyl_benzethonium_chlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124648715-1876689 09G06_rep_A_Methyl_benzethonium_chlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101544007-1869516 07G07_rep_C_Pregnenoloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101544007-1869516 07G07_rep_C_Pregnenoloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_H12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202038872-1882199 16A05_rep_D_Nevirapinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202038872-1882199 16A05_rep_D_Nevirapinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glnP_P3F8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (glnP_P3F8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_26_Mixed.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_26_Mixed.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121957829-1867198 04C02_rep_C_Ethisteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121957829-1867198 04C02_rep_C_Ethisteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122714510-1880055 15D05_rep_D_Ambrisentanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122714510-1880055 15D05_rep_D_Ambrisentanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S2cells_4_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_40.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121059480-1879315 14D08_rep_D_Formestaneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121059480-1879315 14D08_rep_D_Formestaneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET111.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET111.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093114906-1879144 14G03_rep_C_Fexofenadine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093114906-1879144 14G03_rep_C_Fexofenadine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yiaO_P3G4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (yiaO_P3G4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151820997-1576607 Batch7_UACC257_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223117499-1869983 01B01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223117499-1869983 01B01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD5_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/prs_P4E7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (prs_P4E7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD5_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD3_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C5_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125027861-1862765 03B09_rep_C_Mephenesinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125027861-1862765 03B09_rep_C_Mephenesinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153353881-1577363 Batch4_NCIH1869_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/maa_#2_P5C7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024966 (maa_#2_P5C7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153524616-1868648 06H01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153524616-1868648 06H01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A10_black_P1-A-10_01_22961.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C18_id_MSn_negative.mzML at line 21
index 311 is out of bounds for axis 0 with size 311
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/Blank14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_A9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145650640-1863963 02C10_rep_A_Dizocilpine maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145650640-1863963 02C10_rep_A_Dizocilpine maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122411435-1867402 04C03_rep_D_Triprolidine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122411435-1867402 04C03_rep_D_Triprolidine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087131/raw/negative-mode/neg-liver-10ev-3.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113008786-1874341 11F05_rep_B_Roxithromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113008786-1874341 11F05_rep_B_Roxithromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-cc1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Brain_raw files/Lumos_ISAS_Brain_Unlabeled_1.mzML at line 689
Premature end of data in tag spectrumList line 92, line 29671, column 1 (Lumos_ISAS_Brain_Unlabeled_1.mzML, line 29671)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123458097-1876124 08H04_rep_B_Thiorphana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123458097-1876124 08H04_rep_B_Thiorphana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0017_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123624595-1876193 08A02_rep_C_Ziprasidone__Hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123624595-1876193 08A02_rep_C_Ziprasidone__Hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130406133-1877446 13C09_rep_B_Norgestimateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130406133-1877446 13C09_rep_B_Norgestimateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152244970-1868062 05D04_rep_D_Moclobemidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152244970-1868062 05D04_rep_D_Moclobemidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_D22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151242587-1924830 3_B1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151242587-1924830 3_B1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130847260-1877669 13E04_rep_C_Azapropazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130847260-1877669 13E04_rep_C_Azapropazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124317201-1862306 03F10_rep_A_Ketoprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124317201-1862306 03F10_rep_A_Ketoprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150009402-1864123 02F07_rep_B_Astemizolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150009402-1864123 02F07_rep_B_Astemizolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/922-A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-187_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151037166-1865088 02C11_rep_D_Oxandrolonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151037166-1865088 02C11_rep_D_Oxandrolonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_25_male_2022_1017_Michael_neg-0.0049.mzML at line 689
Premature end of data in tag binary line 18819, line 18819, column 891968 (4_25_male_2022_1017_Michael_neg-0.0049.mzML, line 18819)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample031_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_2_B_rep_3_B-B7_1_5836.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_D_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFT001_Cal04RG_d3_276_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 44332, column 1 (SysVirol_IFT001_Cal04RG_d3_276_lipid_Neg_Gimli_19Sep13_13-07-01.mzXML, line 44332)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_2958.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_2958.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person1_Plasma_POS.mzXML at line 689
attributes construct error, line 38, column 74 (Person1_Plasma_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114410859-1922959 4_G1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114410859-1922959 4_G1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_115_2C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2E07Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_095b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/881.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091834437-1878554 13G05_rep_D_Nifurtimoxa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091834437-1878554 13G05_rep_D_Nifurtimoxa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122548815-1867481 05D07_rep_A_Adenosine_5'-monophosphate_monohydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122548815-1867481 05D07_rep_A_Adenosine_5'-monophosphate_monohydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152950694-1868390 06F10_rep_A_Butalbitala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152950694-1868390 06F10_rep_A_Butalbitala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_19032112_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_B8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223953885-2227734 PAT42.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Mycobacterium_Mycolicibacterium_sp_MA3001.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111944787-1872597 10F05_rep_C_Fluocinonidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111944787-1872597 10F05_rep_C_Fluocinonidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150901701-1865014 02G04_rep_D_Chlorhexidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150901701-1865014 02G04_rep_D_Chlorhexidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_49.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_49.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009394_IBD200_E3_A9.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078551/ccms_peak/pseudoalteromonas_120713_04M1A_70-30_MeOH-H2O_FT-IT.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8D12_160605054848.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_I20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_D_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/676.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_57_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100923_57_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_29_CNR_53.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_29_CNR_53.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2G03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thrB_P5C10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (thrB_P5C10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151430303-1924923 4_E5_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151430303-1924923 4_E5_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_C9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/210924_10.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F12_id.mzML at line 21
index 586 is out of bounds for axis 0 with size 586
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/147_119.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_Extracellular/mzML/Ex_Baicalin_1_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124910197-1862703 03B06_rep_B_Aceclofenacb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124910197-1862703 03B06_rep_B_Aceclofenacb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case63_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case63_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000078551/ccms_peak/pseudoalteromonas_120718_PP_70-30_MeOH-H2O_500-1000mz_FT-IT.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/188_145.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007570_031718-5CRP2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case159_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case159_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152202025-1576785 Batch2_NCIH520_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_G3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C9_id_MSn_positive.mzML at line 21
index 406 is out of bounds for axis 0 with size 406
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_61.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201930762-1878144 09H02_rep_D_Sulfabenzamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201930762-1878144 09H02_rep_D_Sulfabenzamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_133_1A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201259814-1881851 16B03_rep_B_Ezetimibea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201259814-1881851 16B03_rep_B_Ezetimibea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111521374-1921491 1_G1_WT_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111521374-1921491 1_G1_WT_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_O11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101709651-1869586 07C06_rep_C_Metaproterenol_sulfate,_orciprenaline_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101709651-1869586 07C06_rep_C_Metaproterenol_sulfate,_orciprenaline_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151234320-1924823 3_B9_SNF3_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151234320-1924823 3_B9_SNF3_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150804000-1924590 2_F9_RGT2_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150804000-1924590 2_F9_RGT2_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152400437-1576879 Batch1_NCIH1993_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/panD_P4G2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (panD_P4G2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125332684-1876961 12E06_rep_D_Thonzonium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125332684-1876961 12E06_rep_D_Thonzonium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHG01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_82.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_82.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151803146-1576592 Batch4_HS578T_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122448378-1867432 04H10_rep_D_Clofilium_tosylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122448378-1867432 04H10_rep_D_Clofilium_tosylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1B11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111842431-1872067 10C04_rep_C_Medrysoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111842431-1872067 10C04_rep_C_Medrysoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_M21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_D4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1202.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1202.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.grif_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control45_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control45_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092452352-1878849 14E07_rep_B_D-cycloserineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092452352-1878849 14E07_rep_B_D-cycloserineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Rothia_mucilaginosa_RmFLR01_mix_PAnmFLR01_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201217442-1881819 16A03_rep_B_Silodosina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201217442-1881819 16A03_rep_B_Silodosina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153933002-1577645 Batch6_OVCAR8_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101419596-1869451 07G09_rep_C_Chloroquine_diphosphatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101419596-1869451 07G09_rep_C_Chloroquine_diphosphatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_sample10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/251.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224333855-1870549 01G10_rep_D_Acebutolol hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224333855-1870549 01G10_rep_D_Acebutolol hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151455161-1576437 Batch6_OVCAR3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112947843-1922208 1_D2_WT_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112947843-1922208 1_D2_WT_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_A_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222833635-1869860 01A07_rep_A_Isoflupredone acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222833635-1869860 01A07_rep_A_Isoflupredone acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM6W004.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094943/raw/MS2/Moustafa_ATB_1st.mzML at line 689
Premature end of data in tag indexedmzML line 2, line 28730, column 1 (Moustafa_ATB_1st.mzML, line 28730)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201155959-1881803 16C07_rep_B_Avobenzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201155959-1881803 16C07_rep_B_Avobenzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111914946-1921692 2_A5_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111914946-1921692 2_A5_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151925529-1576661 Batch7_NCIH209_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153449039-1577408 Batch4_PANC0813_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murF_P4H7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (murF_P4H7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fiu_P3C10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (fiu_P3C10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_14b.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_QC_14b.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_143.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/153-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121629182-1867034 04G06_rep_B_Bupivacaine_hydrochloride_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121629182-1867034 04G06_rep_B_Bupivacaine_hydrochloride_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200606918-1881545 16B11_rep_A_Estramustinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200606918-1881545 16B11_rep_A_Estramustinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165659983-2227454 PAT51.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/arnD_#2_P6E4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (arnD_#2_P6E4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153816165-1577580 Batch6_CCRFCEM_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O3_id_MSn_negative.mzML at line 21
index 311 is out of bounds for axis 0 with size 311
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_D18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100700259-1869100 07F07_rep_A_(S)-(-)-Atenololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100700259-1869100 07F07_rep_A_(S)-(-)-Atenololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/WBE_conc1_PBST0_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153216877-1868500 06H02_rep_B_Vatalaniba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153216877-1868500 06H02_rep_B_Vatalaniba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B14Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153517195-1577431 Batch4_977_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J16_id_MSn_positive.mzML at line 21
index 508 is out of bounds for axis 0 with size 508
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150626538-1924506 2_H2_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150626538-1924506 2_H2_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150417133345.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GG3_01_17099.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112716040-1922110 4_G11_GPR1_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112716040-1922110 4_G11_GPR1_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093055587-1879129 14H06_rep_C_Ronidazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093055587-1879129 14H06_rep_C_Ronidazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101600175-1869529 07B05_rep_C_Propylthiouracila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101600175-1869529 07B05_rep_C_Propylthiouracila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/175_136.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080948/ccms_peak/peaks/12_D24062013T1719_1399CBU_0005_A1.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007691_032218-5CRP1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123805958-1876273 08F05_rep_C_Carbidopab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123805958-1876273 08F05_rep_C_Carbidopab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-CCM-PA-QC-17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rihC_P3B10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (rihC_P3B10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_C3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151413585-1576402 Batch7_CHAGOK1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_C6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125837026-1863163 04H02_rep_A_Ifenprodil_tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125837026-1863163 04H02_rep_A_Ifenprodil_tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_128.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_E_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_E8_id_negative.mzML at line 21
index 206 is out of bounds for axis 0 with size 206
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample8n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093205333-1879185 14C04_rep_C_Naftifine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093205333-1879185 14C04_rep_C_Naftifine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nagK_#1_P4G12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (nagK_#1_P4G12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_E20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101227342-1869361 07G08_rep_B_Molsidominea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101227342-1869361 07G08_rep_B_Molsidominea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/QC_13_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYD015.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_I11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dppD_P4E4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (dppD_P4E4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_CABIN_sample06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122501906-1879952 15E05_rep_C_Ethinylestradiola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122501906-1879952 15E05_rep_C_Ethinylestradiola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202053656-1878209 09A11_rep_D_Pinaverium_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202053656-1878209 09A11_rep_D_Pinaverium_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1366.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1366.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151437404-1576422 Batch6_MOLT4_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180829_ES_H3K_batch11_repB_160.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/26dapLL-26dapM_dapF_P3D10_Aquity_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024891 (26dapLL-26dapM_dapF_P3D10_Aquity_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111605063-1871559 10D02_rep_B_Terazosin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111605063-1871559 10D02_rep_B_Terazosin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/folM_P3E10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (folM_P3E10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091928385-1878597 13C07_rep_D_Proscillaridin_Ab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091928385-1878597 13C07_rep_D_Proscillaridin_Ab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/For Tyas/GNPS/10 Sept 2021/converted/210916_tanaka09.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBmegR13h3b.mzML at line 689
Unescaped '<' not allowed in attributes values, line 187895, column 483 (pBmegR13h3b.mzML, line 187895)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiC_#2_P4A5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024965 (thiC_#2_P4A5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_D_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_E4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152026423-1867953 05C01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152026423-1867953 05C01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GA9_01_16910.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mngA_P4F3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (mngA_P4F3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_J9_id_MSn_positive.mzML at line 21
index 499 is out of bounds for axis 0 with size 499
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112754417-1874237 11C04_rep_A_Sulfamonomethoxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112754417-1874237 11C04_rep_A_Sulfamonomethoxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084060/ccms_peak/2DModels/KM0074.mzML at line 689
Premature end of data in tag binary line 58485, line 58485, column 5808 (KM0074.mzML, line 58485)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151210008-1924802 3_D5_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151210008-1924802 3_D5_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153419022-1868596 06A09_rep_B_Butoconazole_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153419022-1868596 06A09_rep_B_Butoconazole_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087069/ccms_peak/BRB Liquid Convert pos/BBR_R17500_N40_I10e6_E60_pos_06292020.mzML at line 689
Premature end of data in tag binary line 44317, line 44317, column 111293 (BBR_R17500_N40_I10e6_E60_pos_06292020.mzML, line 44317)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153606824-1577472 Batch4_NCIH2342_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murI_P3G2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (murI_P3G2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_G4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007619_032118-Unst4_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223821668-2227654 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114129371-1874843 11D11_rep_D_Ethopropazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114129371-1874843 11D11_rep_D_Ethopropazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151408822-1576398 Batch6_MOLT4_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1144.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1144.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190127_ES_H3K_batch15_repA_223.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/844.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151223203-1576310 Batch5_HCC1187_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GB7_01_17031.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-2-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152541217-1868196 05D09_rep_D_Pemirolast_potassiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152541217-1868196 05D09_rep_D_Pemirolast_potassiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153338982-1577351 Batch5_HDQP1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/H-4-1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122729155-1867562 05C09_rep_A_Chlorprothixene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122729155-1867562 05C09_rep_A_Chlorprothixene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151314833-1576353 Batch7_SNB75_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/6.2_4OI _VSV.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125141533-1876876 12B01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125141533-1876876 12B01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152354126-1576874 Batch1_HX147_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_STD5_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8C01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009408_20190701221659_IBD200_E4_A7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/menI_#2_P4B3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (menI_#2_P4B3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113837251-1922662 3_G9_STE2_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113837251-1922662 3_G9_STE2_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122831483-1875815 08B02_rep_A_Tetracaine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122831483-1875815 08B02_rep_A_Tetracaine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/accB_P5E4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (accB_P5E4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F4_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD3_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_STD3_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093212874-1879191 14B07_rep_C_Trifluridineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093212874-1879191 14B07_rep_C_Trifluridineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123033428-1867706 05F04_rep_B_Amethopterin_(R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123033428-1867706 05F04_rep_B_Amethopterin_(R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100143769-1868849 06B10_rep_D_Bisacodyla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100143769-1868849 06B10_rep_D_Bisacodyla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_G8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111628042-1921549 1_E3_WT_100_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111628042-1921549 1_E3_WT_100_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_19.mzXML at line 689
Premature end of data in tag peaks line 20286, line 20290, column 11843 (20121114_19.mzXML, line 20290)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125424585-1862956 03D02_rep_D_Midodrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125424585-1862956 03D02_rep_D_Midodrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_B_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081774.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153311788-1577329 Batch4_NCIH1666_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8H01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114748070-1875142 12H05_rep_B_Tyloxapola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114748070-1875142 12H05_rep_B_Tyloxapola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200823858-1881646 16H11_rep_A_Cefprozilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200823858-1881646 16H11_rep_A_Cefprozilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153629063-1868700 06B08_rep_C_Lamivudinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153629063-1868700 06B08_rep_C_Lamivudinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/blank_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0042_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_31_2022_1003_Michael_leming_liver_neg-0.0057.mzML at line 689
Premature end of data in tag binary line 13884, line 13884, column 1737644 (3_31_2022_1003_Michael_leming_liver_neg-0.0057.mzML, line 13884)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091915623-1878587 13A03_rep_D_Canrenoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091915623-1878587 13A03_rep_D_Canrenoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG019B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152349153-1576870 Batch1_NCIH1993_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201043849-1877755 09F01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201043849-1877755 09F01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD4_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/entS_P4F8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (entS_P4F8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151330245-1576366 Batch6_OVCAR3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_C10_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lldP_P5B12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (lldP_P5B12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_M10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091950407-1878614 13A11_rep_D_Indatraline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091950407-1878614 13A11_rep_D_Indatraline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_3153_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202149600-1882254 16B08_rep_D_Tolcaponeb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202149600-1882254 16B08_rep_D_Tolcaponeb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201127715-1877787 09D08_rep_B_Thiamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201127715-1877787 09D08_rep_B_Thiamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_92.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_C_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD4_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085105/peak/New directory FOR KWAKU/KK17_RD1_01_13706.mzXML at line 689
Specification mandates value for attribute tGRB10LwAABEZEvaQwwAAERkUgZDPwAARGRVuEK, line 12895, column 267 (KK17_RD1_01_13706.mzXML, line 12895)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_cc5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123041698-1875917 08H04_rep_A_Thiorphanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123041698-1875917 08H04_rep_A_Thiorphanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101126142-1869312 07A03_rep_B_Cefotiam_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101126142-1869312 07A03_rep_B_Cefotiam_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150931006-1924665 2_D9_RGT2_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150931006-1924665 2_D9_RGT2_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153537034-1577447 Batch5_NCIH1792_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201315865-1877866 09H02_rep_B_Sulfabenzamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201315865-1877866 09H02_rep_B_Sulfabenzamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2E08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_N8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yceG_#2_P4C3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (yceG_#2_P4C3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_F9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111838471-1872064 10H02_rep_C_(R)_-Naproxen_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111838471-1872064 10H02_rep_C_(R)_-Naproxen_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/eamB_P4G10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (eamB_P4G10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083595/ccms_peak/HD1.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (HD1.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K10_id_MSn_negative.mzML at line 21
index 362 is out of bounds for axis 0 with size 362
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_blank_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O17_id_MSn_positive.mzML at line 21
index 645 is out of bounds for axis 0 with size 645
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GF8_01_12155.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_A11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/581.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090651/raw/021722_SH_BW10_15-30eV.mzXML at line 689
Specification mandates value for attribute compresUh95jL4GPd0QXY8J48Y61RH, line 13363, column 44 (021722_SH_BW10_15-30eV.mzXML, line 13363)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101008591-1869250 07C08_rep_B_Sibutramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101008591-1869250 07C08_rep_B_Sibutramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28022021_Batch02_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112140984-1921817 2_B4_WT_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112140984-1921817 2_B4_WT_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114316494-1874930 12F04_rep_A_Primidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114316494-1874930 12F04_rep_A_Primidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Blank_MeOH_2_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101133720-1869318 07H08_rep_B_Dirithromycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101133720-1869318 07H08_rep_B_Dirithromycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170207_016EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/d3/6ad748e8c7546bd6772a1fdfdab7d8/input_file/SH9_20170207_016EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151350324-1924889 4_H1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151350324-1924889 4_H1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153931815-1577644 Batch6_OVCAR8_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150843146-1924624 2_D10_RGT2_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150843146-1924624 2_D10_RGT2_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_B6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152330453-1576855 Batch1_LK2_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124918904-1862710 03B11_rep_B_Flutamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124918904-1862710 03B11_rep_B_Flutamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_22_CNR_51.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_22_CNR_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bacA_P4A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (bacA_P4A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/361.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD3_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1204.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1204.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_O10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_95.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ4_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/172-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_148.mzXML at line 689
Premature end of data in tag peaks line 21459, line 21463, column 7749 (20121114_148.mzXML, line 21463)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/menE_#2_P5B1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (menE_#2_P5B1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153655991-1577513 Batch4_RT4_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151828164-1576613 Batch3_NCIH2228_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090213/ccms_peak/17March2022_025_VH BK Trang 10x_pos  2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_56.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_RBC_24h_POS.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer4_RBC_24h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000078960/ccms_peak/SoceGT47-Pmix_SPL-P124-6+5+4_RA4_01_20442.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224206556-1870480 01H03_rep_D_Imipramine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224206556-1870480 01H03_rep_D_Imipramine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_B6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150607437-1864879 02C11_rep_C_Oxandroloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150607437-1864879 02C11_rep_C_Oxandroloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD3_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnD_P3A12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (phnD_P3A12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GC2_01_11480.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150919447-1924655 2_H4_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150919447-1924655 2_H4_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR331_5h3a.mzML at line 689
Opening and ending tag mismatch: binary line 212884 and binaryDataArray, line 212888, column 31 (pBlateR331_5h3a.mzML, line 212888)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202327167-1878330 10G11_rep_A_Cycloheximidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202327167-1878330 10G11_rep_A_Cycloheximidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151009024-1865066 02B04_rep_D_Azacyclonola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151009024-1865066 02B04_rep_D_Azacyclonola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ12101440.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD3_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample137_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151716427-1576554 Batch7_SKMEL2_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152118133-1867995 05F11_rep_C_Clebopride_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152118133-1867995 05F11_rep_C_Clebopride_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B03Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/257.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiD_P3F10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (thiD_P3F10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_1918_d3_282_lipid_Neg_Gimli_23Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 43606, column 1 (SysVirol_IFL001_1918_d3_282_lipid_Neg_Gimli_23Sep13_13-07-01.mzXML, line 43606)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHF10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/008_1217_1_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152246347-1868063 05D04_rep_D_Moclobemideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152246347-1868063 05D04_rep_D_Moclobemideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_I13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101451152-1869476 07H09_rep_C_Gliclazideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101451152-1869476 07H09_rep_C_Gliclazideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122610193-1880005 15G07_rep_D_Montelukastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122610193-1880005 15G07_rep_D_Montelukastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_P8_id_MSn_negative.mzML at line 21
index 343 is out of bounds for axis 0 with size 343
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A1_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A13_id.mzML at line 21
index 583 is out of bounds for axis 0 with size 583
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152715076-1577039 Batch2_LOXIMVI_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_54.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153650990-1868718 06A05_rep_C_Idebenonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153650990-1868718 06A05_rep_C_Idebenonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152958359-1577177 Batch3_MCF7_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET134.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET134.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_158.mzXML at line 689
Premature end of data in tag msRun line 5, line 21805, column 1 (20121114_158.mzXML, line 21805)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C17_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_69.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122801684-1867589 05D03_rep_A_Dobutamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122801684-1867589 05D03_rep_A_Dobutamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_G4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG015A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201058987-1877766 09B01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201058987-1877766 09B01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122120024-1879783 15B05_rep_B_Anethole-trithioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122120024-1879783 15B05_rep_B_Anethole-trithioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control249_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control249_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_54.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mdtI_#4_P4D10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (mdtI_#4_P4D10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/483.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092243393-1878749 14F05_rep_A_Sulfadoxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092243393-1878749 14F05_rep_A_Sulfadoxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094957/peak/APOLAR_POSITIVE/A11_Apolar_Daph_C18_2_C30_LCMS_Pos_DIMSn_CIDIMSn_CIDonly.mzML at line 689
Premature end of data in tag index line 8225, line 8231, column 1 (A11_Apolar_Daph_C18_2_C30_LCMS_Pos_DIMSn_CIDIMSn_CIDonly.mzML, line 8231)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_018EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/12/4120877cfd1b5cf03fdc5d1881d992/input_file/QC_20170207_018EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I3_id_negative.mzML at line 21
index 263 is out of bounds for axis 0 with size 263
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_181_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person19_plasma_elder_POS.mzXML at line 689
attributes construct error, line 41, column 90 (Person19_plasma_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1211.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1211.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-3-4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_L5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G05P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165848099-2227553 PAT49.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112911594-1874298 11A03_rep_A_Methazolamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112911594-1874298 11A03_rep_A_Methazolamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_A11_id_positive.mzML at line 21
index 326 is out of bounds for axis 0 with size 326
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ulaD_#3_P3G8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (ulaD_#3_P3G8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151448969-1924939 4_G9_SNF3_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151448969-1924939 4_G9_SNF3_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151502740-1576443 Batch7_NCIH1734_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P2_H3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145737448-1864001 02D08_rep_A_Chlorpheniramine maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145737448-1864001 02D08_rep_A_Chlorpheniramine maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111356216-1871460 10F06_rep_B_Sulfamethazine_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111356216-1871460 10F06_rep_B_Sulfamethazine_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBsubR37_5h2b.mzML at line 689
Opening and ending tag mismatch: binary line 17476 and scanWindow, line 17478, column 30 (pBsubR37_5h2b.mzML, line 17478)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroH_P3F1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (aroH_P3F1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151500272-1576441 Batch6_CALU3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dppF_P5D1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (dppF_P5D1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_A6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_47_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124426072-1862361 03F03_rep_A_Pyrantel_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124426072-1862361 03F03_rep_A_Pyrantel_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153823318-1577586 Batch7_NCIH441_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_P15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_G2_id_negative.mzML at line 21
index 202 is out of bounds for axis 0 with size 202
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tdcB_P3A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (tdcB_P3A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D1_postFOS_1_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_B9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122945783-1880174 15B03_rep_D_Melengestrol_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122945783-1880174 15B03_rep_D_Melengestrol_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2B12Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151826954-1867857 05A03_rep_C_Alfuzosin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151826954-1867857 05A03_rep_C_Alfuzosin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/blank_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/frlB_P3A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (frlB_P3A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_G8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122145800-1867285 04D06_rep_D_Fenofibrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122145800-1867285 04D06_rep_D_Fenofibrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pdxJ_P3C9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (pdxJ_P3C9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122153311-1879808 15F08_rep_C_Vecuronium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122153311-1879808 15F08_rep_C_Vecuronium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/temp/SYL-TSQ-13-06-21_L80cbz.mzXML at line 689
Premature end of data in tag msRun line 5, line 514514, column 1 (SYL-TSQ-13-06-21_L80cbz.mzXML, line 514514)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_P6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007571_031718-5CRP3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222838831-1869864 01D02_rep_A_Chloramphenicolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222838831-1869864 01D02_rep_A_Chloramphenicolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113428507-1922447 2_F2_WT_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113428507-1922447 2_F2_WT_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153435524-1577397 Batch4_SW156_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/treB_P3A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (treB_P3A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I24_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_H2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD1_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/proB_P3C1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (proB_P3C1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_G10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111954777-1921726 2_H3_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111954777-1921726 2_H3_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170127_048ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/fc/8412ad871b61ca61144104c2d5a7b0/input_file/QC_20170127_048ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121626553-1879560 15H08_rep_A_Rivastigminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121626553-1879560 15H08_rep_A_Rivastigminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNS654_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1T5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1T5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P23_id.mzML at line 21
index 549 is out of bounds for axis 0 with size 549
Error processing file: /data/datasets/server/MassIVE/MSV000080705/ccms_peak/RAW/SILAC half.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_E21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_D22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152223612-1576802 Batch2_T47D_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113540971-1874563 11B09_rep_C_Nadololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113540971-1874563 11B09_rep_C_Nadololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_A3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113508303-1874537 11C02_rep_C_Azlocillin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113508303-1874537 11C02_rep_C_Azlocillin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092488/raw/CD073_P1-A-2_01_2383.mzML at line 689
Specification mandates value for attribute namFnbFY, line 84980, column 62 (CD073_P1-A-2_01_2383.mzML, line 84980)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153112712-1577233 Batch3_SU8686_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151507875-1924955 4_D8_SNF3_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151507875-1924955 4_D8_SNF3_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007559_031618-1CRP6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_blank_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Blank_1_B-A1_1_5626.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/957.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2F01P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088261/raw/210916_tanaka02.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112004743-1872613 10H10_rep_C_Pridinol_methanesulfonate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112004743-1872613 10H10_rep_C_Pridinol_methanesulfonate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hB3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hB3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_5_P_rep_1_B-E3_1_5674.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD3_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124433642-1862367 03E07_rep_A_Meclofenamic_acid_sodium_salt_monohydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124433642-1862367 03E07_rep_A_Meclofenamic_acid_sodium_salt_monohydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_sample12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007732_032318-1CRP6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124832200-1876736 12G09_rep_C_Timolol_maleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124832200-1876736 12G09_rep_C_Timolol_maleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/140-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S87.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S87.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101553974-1869524 07A07_rep_C_Colistin_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101553974-1869524 07A07_rep_C_Colistin_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200942307-1877710 09D05_rep_B_Nalidixic_acid_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200942307-1877710 09D05_rep_B_Nalidixic_acid_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C24_id_negative.mzML at line 21
index 235 is out of bounds for axis 0 with size 235
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223826217-1870310 01D05_rep_C_Triamtereneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223826217-1870310 01D05_rep_C_Triamtereneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152829525-1868326 06A06_rep_A_Pepstatin_Aa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152829525-1868326 06A06_rep_A_Pepstatin_Aa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112124739-1921803 2_A8_GAP1_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112124739-1921803 2_A8_GAP1_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD5_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009766_IBD200_E23_B6.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control237_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control237_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_C2_id_negative.mzML at line 21
index 274 is out of bounds for axis 0 with size 274
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122129442-1879790 15B08_rep_B_Carvedilola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122129442-1879790 15B08_rep_B_Carvedilola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_13_Blood_CMC_control_POS.mzXML at line 689
attributes construct error, line 38, column 91 (Mouse_13_Blood_CMC_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_I19_id_MSn_positive.mzML at line 21
index 537 is out of bounds for axis 0 with size 537
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095828/peak/Con3-LC-neg.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202118449-1878228 09H03_rep_D_Benzocainea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202118449-1878228 09H03_rep_D_Benzocainea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153535758-1577446 Batch5_NCIH1792_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/amyA_#1_P4E1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (amyA_#1_P4E1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_122a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/693.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD3_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBmegR224h2a.mzML at line 689
Opening and ending tag mismatch: binary line 210850 and spectrum, line 210882, column 20 (pBmegR224h2a.mzML, line 210882)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I21_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D2_preFOS_2_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_P7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/025_CRa_H9M5_M470_C03_K1_low_pos.mzXML at line 689
Premature end of data in tag msRun line 5, line 14827, column 1 (025_CRa_H9M5_M470_C03_K1_low_pos.mzXML, line 14827)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112046748-1873031 10H07_rep_C_Lithocholic_acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112046748-1873031 10H07_rep_C_Lithocholic_acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_E_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8C10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5F09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_D9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD5_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153503028-1868631 06G08_rep_C_Rifapentineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153503028-1868631 06G08_rep_C_Rifapentineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112717160-1922111 4_G11_GPR1_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112717160-1922111 4_G11_GPR1_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121924491-1879695 15B03_rep_B_Melengestrol_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121924491-1879695 15B03_rep_B_Melengestrol_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_C21_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112356101-1921935 3_H7_GPR1_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112356101-1921935 3_H7_GPR1_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_A18_id_negative.mzML at line 21
index 262 is out of bounds for axis 0 with size 262
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/269.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET127.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET127.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123419906-1876093 08E04_rep_B_Zafirlukastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123419906-1876093 08E04_rep_B_Zafirlukastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151157205-1924791 3_E2_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151157205-1924791 3_E2_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V6_EDTAk3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_F4_id_MSn_negative.mzML at line 21
index 347 is out of bounds for axis 0 with size 347
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_K12_id_MSn_negative.mzML at line 21
index 347 is out of bounds for axis 0 with size 347
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153659617-1577516 Batch4_DU145_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B19_id.mzML at line 21
index 541 is out of bounds for axis 0 with size 541
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_194.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_F22_id_MSn_negative.mzML at line 21
index 344 is out of bounds for axis 0 with size 344
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-001_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/grxD_P3F11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (grxD_P3F11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170209_064ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/6c/7afbf10c2361ef1249fe63ebe967bd/input_file/MMW3_20170209_064ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151441863-1924933 4_D10_SNF3_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151441863-1924933 4_D10_SNF3_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw_Baseline_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_STD3_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_G15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/zntA_P3G1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (zntA_P3G1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ7_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S94.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S94.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201911239-1878129 09B02_rep_D_Glimepirideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201911239-1878129 09B02_rep_D_Glimepirideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD3_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122942986-1867669 05G11_rep_B_Fusidic_acid_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122942986-1867669 05G11_rep_B_Fusidic_acid_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_13.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_13.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_G8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lsrG_#1_P4D4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (lsrG_#1_P4D4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114511347-1875023 12F02_rep_A_Propofolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114511347-1875023 12F02_rep_A_Propofolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_G5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_05P_G2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153529599-1577441 Batch4_SW1573_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124637273-1862581 03G05_rep_B_Oxymetazoline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124637273-1862581 03G05_rep_B_Oxymetazoline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112643995-1874181 11B09_rep_A_Nadololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112643995-1874181 11B09_rep_A_Nadololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7E09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I14_id.mzML at line 21
index 521 is out of bounds for axis 0 with size 521
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_38.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125307921-1876942 12F04_rep_D_Primidoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125307921-1876942 12F04_rep_D_Primidoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/479-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170125_065EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/03/85b1fac80c199be6808c98e3966fd1/input_file/MMW4_20170125_065EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GH4_01_16997.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114955425-1875245 12G10_rep_B_(+,-)-Octopamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114955425-1875245 12G10_rep_B_(+,-)-Octopamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223444681-1870140 01G10_rep_B_Acebutolol hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223444681-1870140 01G10_rep_B_Acebutolol hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/917.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_B8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_E22_id_negative.mzML at line 21
index 262 is out of bounds for axis 0 with size 262
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/011_20uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M19_id_MSn_positive_20240503131302.mzML at line 21
index 558 is out of bounds for axis 0 with size 558
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125207801-1862845 03E02_rep_C_Ranitidine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125207801-1862845 03E02_rep_C_Ranitidine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153419411-1577384 Batch4_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD4_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_G23_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121329991-1879427 15D10_rep_A_Anthralinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121329991-1879427 15D10_rep_A_Anthralinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_17091608_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EBM006B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_blank_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1142.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112046512-1921770 2_B11_GAP1_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112046512-1921770 2_B11_GAP1_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K4_id_MSn_positive.mzML at line 21
index 354 is out of bounds for axis 0 with size 354
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fruB_P3B8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (fruB_P3B8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124301857-1862294 03A04_rep_A_Chlorzoxazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124301857-1862294 03A04_rep_A_Chlorzoxazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5E13_160602085236.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152908848-1577135 Batch5_NCIH3255_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170125_052EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/19/605d53e67568c5944cfbbc29a795cc/input_file/SH9_20170125_052EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control151_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control151_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/792.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S005_dilute.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112116431-1921796 2_F4_WT_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112116431-1921796 2_F4_WT_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151125027-1576263 Batch5_SHP77_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201347521-1877889 09C02_rep_C_Pranlukastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201347521-1877889 09C02_rep_C_Pranlukastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/263.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control163_pos.mzXML at line 689
attributes construct error, line 37, column 72 (Control163_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122854211-1867630 05G07_rep_A_GBR_12909_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122854211-1867630 05G07_rep_A_GBR_12909_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_57_NOR_49.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_57_NOR_49.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB3A06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mtlA_#1_P4B7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (mtlA_#1_P4B7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/LYG019B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_66_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (20100917_66_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD5_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_blank_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/37-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00077192.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_Extracellular/mzML/NEx_Baicalin_1_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153126341-1577244 Batch4_SW156_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_74.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1453.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1453.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130100571-1863282 04E05_rep_A_Diethylcarbamazine_citratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130100571-1863282 04E05_rep_A_Diethylcarbamazine_citratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_66.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/CNB091_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BM5F002.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201141166-1881792 16F05_rep_B_Histamine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201141166-1881792 16F05_rep_B_Histamine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125125228-1876864 12F11_rep_C_Allopurinolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125125228-1876864 12F11_rep_C_Allopurinolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine64.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine64.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/478.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102007658-1869731 07F05_rep_D_Atovaquonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102007658-1869731 07F05_rep_D_Atovaquonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1373.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1373.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ4_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092922501-1879060 14F09_rep_C_Sarafloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092922501-1879060 14F09_rep_C_Sarafloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_D19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD4_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-low4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_C2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_G12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBmegR131_5h3b.mzML at line 689
Specification mandates value for attribute E, line 82347, column 133 (pBmegR131_5h3b.mzML, line 82347)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200545387-1881529 16E09_rep_A_Homoveratrylaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200545387-1881529 16E09_rep_A_Homoveratrylaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A8_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223535623-1870179 01F11_rep_B_Tolazoline hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223535623-1870179 01F11_rep_B_Tolazoline hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_2_P_rep_4_B-B2_1_5515.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074711.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113257354-1922367 1_F8_IZH2_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113257354-1922367 1_F8_IZH2_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124825958-1862668 03G01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124825958-1862668 03G01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130827240-1877653 13G11_rep_C_Torsemidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130827240-1877653 13G11_rep_C_Torsemidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB2J005.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/012_50uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150418033346.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153000722-1577179 Batch3_SCABER_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111802448-1921630 2_C1_WT_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111802448-1921630 2_C1_WT_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_blood_4h_NEG.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer4_blood_4h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/CVP_B_rep_1_B-D9_1_5671.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150740364-1924570 2_H5_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150740364-1924570 2_H5_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151404481-1924901 4_A3_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151404481-1924901 4_A3_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170209_061ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/d9/14ae0ba723093c80afcc90a1ae4241/input_file/MMW4_20170209_061ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152349153-1576870 Batch1_NCIH1993_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ2_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_209.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_D8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190128164045.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GH6_01_17116.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152141821-1576769 Batch2_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125912876-1877222 13A03_rep_A_Canrenoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125912876-1877222 13A03_rep_A_Canrenoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100523572-1869022 06D03_rep_D_Corticosteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100523572-1869022 06D03_rep_D_Corticosteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122953135-1875879 08A03_rep_A_Mevastatinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122953135-1875879 08A03_rep_A_Mevastatinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_M12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_25_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151251941-1576334 Batch5_MALME3M_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_108.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ANT2_MS_RA5_01_22512.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122757090-1875788 08A05_rep_A_Pentobarbitala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122757090-1875788 08A05_rep_A_Pentobarbitala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/640.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_J23_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAJ08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/890.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092055573-1878664 14F10_rep_A_Nialamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092055573-1878664 14F10_rep_A_Nialamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/blank_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_37.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_37.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O1_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/blank_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH9_20170127_020ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/64/058e1cadac72b9d16fd1253f556107/input_file/SH9_20170127_020ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092149940-1878706 14A06_rep_A_Sertaconazole_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092149940-1878706 14A06_rep_A_Sertaconazole_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_D_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nudC_P3A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (nudC_P3A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153710336-1577525 Batch4_ASPC1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202101377-1878215 09B01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202101377-1878215 09B01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_C8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111507488-1921094 1_F10_GAP1_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111507488-1921094 1_F10_GAP1_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_D_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152801792-1577078 Batch3_EPLC272H_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/095_85.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145718939-1863986 02D07_rep_A_Naltrexone hydrochloride dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145718939-1863986 02D07_rep_A_Naltrexone hydrochloride dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114957926-1875247 12G09_rep_B_Timolol_maleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114957926-1875247 12G09_rep_B_Timolol_maleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 2-30116 - GI-14-760.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_B17_id.mzML at line 21
index 544 is out of bounds for axis 0 with size 544
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153735529-1577546 Batch6_NCIH146_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hcaD_P3B11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024981 (hcaD_P3B11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151845284-1867872 05D09_rep_C_Pemirolast_potassiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151845284-1867872 05D09_rep_C_Pemirolast_potassiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123430952-1876102 08B01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123430952-1876102 08B01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101907443-1869682 07A04_rep_D_Rofecoxibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101907443-1869682 07A04_rep_D_Rofecoxibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087805/ccms_peak/Media_C4_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151228013-1576314 Batch5_MALME3M_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_C2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124134163-1876439 08A08_rep_D_Itraconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124134163-1876439 08A08_rep_D_Itraconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltA_P3F1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (gltA_P3F1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E5_id.mzML at line 21
index 528 is out of bounds for axis 0 with size 528
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153620083-1577483 Batch4_977_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET64.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET64.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224107666-1870434 01A04_rep_D_Acetazolamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224107666-1870434 01A04_rep_D_Acetazolamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_A12_id_positive.mzML at line 21
index 364 is out of bounds for axis 0 with size 364
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202220199-1882278 16D11_rep_D_Phenprobamateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202220199-1882278 16D11_rep_D_Phenprobamateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202401191-1878357 10G01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202401191-1878357 10G01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD5_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw6_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBpumR23h3a.mzML at line 689
Specification mandates value for attribute vaoE, line 156015, column 83 (pBpumR23h3a.mzML, line 156015)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/006_1022_1_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100201144-1868862 06E07_rep_D_Carteolol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100201144-1868862 06E07_rep_D_Carteolol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glcD_P4D3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (glcD_P4D3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210314_LKM_control_beads_2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_F12_id.mzML at line 21
index 529 is out of bounds for axis 0 with size 529
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_O2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145858045-1864066 02A09_rep_A_Amidopyrineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145858045-1864066 02A09_rep_A_Amidopyrineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201409308-1877905 09D01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201409308-1877905 09D01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123536552-1876155 08H02_rep_C_Alendronate_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123536552-1876155 08H02_rep_C_Alendronate_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101933450-1869703 07F11_rep_D_Clorsulona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101933450-1869703 07F11_rep_D_Clorsulona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G7_id_negative.mzML at line 21
index 247 is out of bounds for axis 0 with size 247
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/382.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224211747-1870484 01A07_rep_D_Isoflupredone acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224211747-1870484 01A07_rep_D_Isoflupredone acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/691.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GD11_01_11507.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151747338-1576579 Batch4_HS578T_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125137361-1876873 12B04_rep_C_Felbinaca.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125137361-1876873 12B04_rep_C_Felbinaca.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120904027-1879228 14F06_rep_D_Cyclopentolate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120904027-1879228 14F06_rep_D_Cyclopentolate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152559553-1868210 05H11_rep_D_Hesperidin_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152559553-1868210 05H11_rep_D_Hesperidin_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E8_id_MSn_positive.mzML at line 21
index 623 is out of bounds for axis 0 with size 623
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130040794-1877287 13A10_rep_A_Darifenacin_hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130040794-1877287 13A10_rep_A_Darifenacin_hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_A12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trkG_P4C3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (trkG_P4C3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101848914-1869667 07H06_rep_D_Nifuroxazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101848914-1869667 07H06_rep_D_Nifuroxazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6F11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113840660-1874707 11A02_rep_C_Carbinoxamine_maleate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113840660-1874707 11A02_rep_C_Carbinoxamine_maleate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_QC_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123131409-1867751 05G08_rep_B_Carbetapentane_citrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123131409-1867751 05G08_rep_B_Carbetapentane_citrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170209_025ENMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/47/7c2bd65c043e10fdede16579c42af7/input_file/MMW4_20170209_025ENMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114744322-1875139 12F06_rep_B_(-)-MK_801_hydrogen_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114744322-1875139 12F06_rep_B_(-)-MK_801_hydrogen_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_89.mzXML at line 689
Premature end of data in tag peaks line 32305, line 32309, column 11842 (20121114_89.mzXML, line 32309)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GD5_01_17181.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_blank_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD5_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_B_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201756614-1882072 16F09_rep_C_Valdecoxibb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201756614-1882072 16F09_rep_C_Valdecoxibb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_111a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/604.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_46_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_QC_13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_C20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/008_2uMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180417_ES_H3K_batch6_repA_96.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD5_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/puuD_#2_P5D11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (puuD_#2_P5D11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control86_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control86_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000091586/peak/Corals/213_WH_S13_C15_PL.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_213.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person26_blood_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 83 (Person26_blood_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114500538-1875015 12F07_rep_A_Bephenium_hydroxynaphthoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114500538-1875015 12F07_rep_A_Bephenium_hydroxynaphthoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911200906972-1877684 09F08_rep_B_3-alpha-Hydroxy-5-beta-androstan-17-onea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911200906972-1877684 09F08_rep_B_3-alpha-Hydroxy-5-beta-androstan-17-onea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person23_blood_elder_POS.mzXML at line 689
attributes construct error, line 41, column 83 (Person23_blood_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-02-02_CABIN_EXTRACT_longterm_storage_sample05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_blank_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151217131-1576305 Batch5_NCIH345_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/D-arabinitol_neg.mzXML at line 689
Premature end of data in tag peaks line 7807, line 7811, column 40426 (D-arabinitol_neg.mzXML, line 7811)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ycaO_#3_P4H1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (ycaO_#3_P4H1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112521807-1922010 3_D9_GPR1_10_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112521807-1922010 3_D9_GPR1_10_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152846247-1868339 06B06_rep_A_Modafinilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152846247-1868339 06B06_rep_A_Modafinilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121800552-1867106 04F01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121800552-1867106 04F01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated12hA1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated12hA1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD1_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125413548-1876992 12E02_rep_D_Nizatidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125413548-1876992 12E02_rep_D_Nizatidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151335500-1924876 3_C5_WT_1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151335500-1924876 3_C5_WT_1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_C8_id_MSn_negative_2.mzML at line 21
index 268 is out of bounds for axis 0 with size 268
Error processing file: /data/datasets/server/MassIVE/MSV000082738/ccms_peak/ST000780/EX00361-lipidomics/Raw data/POS/20150304_Test.mzXML at line 689
Extra content at the end of the document, line 74445, column 1 (20150304_Test.mzXML, line 74445)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_G9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EB1K003.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125031363-1862768 03A09_rep_C_Nitrofurantoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125031363-1862768 03A09_rep_C_Nitrofurantoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210308_AD_60.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike2_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V8_EDTAk3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A10_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_MICU_367_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112514845-1922004 3_F2_WT_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112514845-1922004 3_F2_WT_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15102021_Batch11_QC_69.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/013_100uMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150418050705.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/PED1_30EV_RA5_01_22665.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151541084-1576474 Batch7_SN12C_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095538/raw/2mecdp_12C_CE20_msAG243_Aquity_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024762 (2mecdp_12C_CE20_msAG243_Aquity_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074706.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/003_50nMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GC7_01_11487.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_129.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150532340-1864852 02D01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150532340-1864852 02D01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_H17_id_MSn_positive.mzML at line 21
index 537 is out of bounds for axis 0 with size 537
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_119a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007603_031718-buffer ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_19_Liver_EtOH_control_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_19_Liver_EtOH_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1C05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114937727-1875231 12C01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114937727-1875231 12C01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1538.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1538.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/252.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_M22_id_MSn_positive.mzML at line 21
index 541 is out of bounds for axis 0 with size 541
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_G_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_4_Dorsal_skin_HO_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_4_Dorsal_skin_HO_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/356.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124222990-1862263 03E10_rep_A_Metoclopramide_monohydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124222990-1862263 03E10_rep_A_Metoclopramide_monohydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_C_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC07.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-073_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/GNF.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222907040-1869885 01B02_rep_A_Meticranea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222907040-1869885 01B02_rep_A_Meticranea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD3_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111710505-1921585 1_A10_GAP1_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111710505-1921585 1_A10_GAP1_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112034940-1921760 2_C11_GAP1_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112034940-1921760 2_C11_GAP1_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Pos_115_1C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151859126-1576639 Batch7_NCIH1993_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125548305-1877064 12B01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125548305-1877064 12B01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114101058-1874820 11F06_rep_D_Beclomethasone_dipropionatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114101058-1874820 11F06_rep_D_Beclomethasone_dipropionatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case171_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case171_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152902953-1577130 Batch5_NCIH2347_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_118.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_118.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/allC_P4D1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (allC_P4D1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100507306-1869009 06A04_rep_D_Thyroxine_(L)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100507306-1869009 06A04_rep_D_Thyroxine_(L)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/napH_P3C7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024986 (napH_P3C7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-109_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_D6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V5_LH.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNT302_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/blank_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201140186-1877796 09A05_rep_B_N-Acetyl-DL-homocysteine_Thiolactonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201140186-1877796 09A05_rep_B_N-Acetyl-DL-homocysteine_Thiolactonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121458219-1879494 15B11_rep_A_Diclazurila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121458219-1879494 15B11_rep_A_Diclazurila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2C07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152724687-1577047 Batch2_OVCAR3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_C8_id_negative.mzML at line 21
index 200 is out of bounds for axis 0 with size 200
Error processing file: /data/datasets/server/MassIVE/MSV000090213/raw/17March2022_025_VH BK Trang 10x_pos  2.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET15.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET15.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092031715-1878646 14A08_rep_A_Piretanidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092031715-1878646 14A08_rep_A_Piretanidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111934538-1872589 10D09_rep_C_Ribostamycin_sulfate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111934538-1872589 10D09_rep_C_Ribostamycin_sulfate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_74.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GD4_01_16947.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_174.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD1_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223556179-1870195 01E01_rep_C_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223556179-1870195 01E01_rep_C_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122358851-1879904 15F05_rep_C_Ibudilasta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122358851-1879904 15F05_rep_C_Ibudilasta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202402538-1878358 10C08_rep_A_Aprepitanta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202402538-1878358 10C08_rep_A_Aprepitanta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Soil_Sample_MetFish/003_Soil_500mMExtra_2_Col2_JX_12172015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lysC_P3D6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (lysC_P3D6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_A8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153650023-1577508 Batch4_SW1573_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/008_1217_3_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151955849-1867928 05A08_rep_C_Cefoperazone_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151955849-1867928 05A08_rep_C_Cefoperazone_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cpsB_P3A3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (cpsB_P3A3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6D06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152943050-1577164 Batch5_NCIH2347_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/125_106_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_43_AC+_15.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121913295-1867163 04G08_rep_C_Oxytetracycline_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121913295-1867163 04G08_rep_C_Oxytetracycline_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/644.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202531705-1878428 10G03_rep_A_Podophyllotoxina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202531705-1878428 10G03_rep_A_Podophyllotoxina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/21.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample191_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130241203-1877380 13C07_rep_B_Proscillaridin_Ab.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130241203-1877380 13C07_rep_B_Proscillaridin_Ab.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202225427-1882282 16C04_rep_D_1,8-Dihydroxyanthraquinoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202225427-1882282 16C04_rep_D_1,8-Dihydroxyanthraquinoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151005417-1924695 3_H3_WT_100000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151005417-1924695 3_H3_WT_100000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_automated_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088207/updates/2021-11-23_ncoffey_17c5cc15/peak/Boiteau_M_pos_IMS1_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153126985-1868461 06H01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153126985-1868461 06H01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_E10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_MICU_238_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122021404-1867217 04C09_rep_C_Vinpocetineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122021404-1867217 04C09_rep_C_Vinpocetineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5B04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_12_2022_1003_Michael_leming_liver_neg-0.0032.mzML at line 689
Premature end of data in tag binary line 26196, line 26196, column 598142 (1_12_2022_1003_Michael_leming_liver_neg-0.0032.mzML, line 26196)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150604391-1924487 1_E3_WT_100_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150604391-1924487 1_E3_WT_100_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007487_031618-Unst1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_72.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202200868-1882263 16G05_rep_D_Lomerizine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202200868-1882263 16G05_rep_D_Lomerizine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_G2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control250_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control250_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224249929-1870514 01D05_rep_D_Triamtereneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224249929-1870514 01D05_rep_D_Triamtereneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_42_C_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_D13_id_MSn_positive.mzML at line 21
index 395 is out of bounds for axis 0 with size 395
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153603342-1577469 Batch4_NCIH1666_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200949310-1881709 16F06_rep_A_Rasagilinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200949310-1881709 16F06_rep_A_Rasagilinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/pe161_cfa_P4B7_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024913 (pe161_cfa_P4B7_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pstS_P3G10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (pstS_P3G10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152051155-1576729 Batch1_MDAMB436_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD4_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14022022_QTRAP01_CABIN_sample06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_C2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082728/ccms_peak/ST000661/EX00264-lipidomics/Raw data/NEG/20140728_Authentic.mzXML at line 689
Extra content at the end of the document, line 28878, column 1 (20140728_Authentic.mzXML, line 28878)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153826930-1868795 06C08_rep_C_Dibenzepine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153826930-1868795 06C08_rep_C_Dibenzepine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2E08Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WIAJ04.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E20_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_L9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130626186-1877556 13A11_rep_C_Indatraline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130626186-1877556 13A11_rep_C_Indatraline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybdG_P4G8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (ybdG_P4G8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/PseudomonasUncultured_MADAA03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113242291-1874457 11C07_rep_B_Oxalamine_citrate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113242291-1874457 11C07_rep_B_Oxalamine_citrate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007558_031618-1CRP6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111940999-1872594 10F01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111940999-1872594 10F01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124446524-1862377 03A03_rep_A_Pentylenetetrazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124446524-1862377 03A03_rep_A_Pentylenetetrazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-050.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-050.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201328232-1877875 09A02_rep_B_Sulmazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201328232-1877875 09A02_rep_B_Sulmazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_blank_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114041227-1922772 3_F7_STE2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114041227-1922772 3_F7_STE2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_130.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hB2a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hB2a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145859326-1864067 02C06_rep_A_Danazola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145859326-1864067 02C06_rep_A_Danazola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dsbB_P6C5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (dsbB_P6C5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case200_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case200_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_D_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125232642-1876915 12E04_rep_D_Xamoterol_hemifumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125232642-1876915 12E04_rep_D_Xamoterol_hemifumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-JHU36.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151402193-1924899 4_G8_SNF3_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151402193-1924899 4_G8_SNF3_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101827476-1869650 07G11_rep_D_Parthenolideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101827476-1869650 07G11_rep_D_Parthenolideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F6_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/DEX-plasma-S9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_H14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150417956-1924397 1_A7_RGT2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150417956-1924397 1_A7_RGT2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-CCM-PA-QC-03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yeaE_P4C9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (yeaE_P4C9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3A11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152800625-1577077 Batch5_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112030111-1873018 10H04_rep_C_Cloperastine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112030111-1873018 10H04_rep_C_Cloperastine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092960/raw/DDA/DDA/20221111-JC-471_Control_Water_DDA_007_02.mzML at line 689
Invalid character: Char 0x0 out of allowed range
, line 163248, column 21 (20221111-JC-471_Control_Water_DDA_007_02.mzML, line 163248)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113838327-1922663 3_G9_STE2_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113838327-1922663 3_G9_STE2_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/ROO1_30EV_RA1_01_22701.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_F5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093204141-1879184 14C04_rep_C_Naftifine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093204141-1879184 14C04_rep_C_Naftifine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112428195-1874073 10E04_rep_D_Meclofenoxate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112428195-1874073 10E04_rep_D_Meclofenoxate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114057306-1874817 11D08_rep_D_Carbenoxolone_disodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114057306-1874817 11D08_rep_D_Carbenoxolone_disodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/366.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_E_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/004_Nitrate_Day73_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/38-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/NP_336.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111806606-1872039 10F07_rep_C_Guaifenesinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111806606-1872039 10F07_rep_C_Guaifenesinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Api_19090114_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/16032021_Batch06_QC_ 6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_E_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/26_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151136344-1924773 3_F10_SNF3_1000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151136344-1924773 3_F10_SNF3_1000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_F_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6D08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222919759-1869895 01A08_rep_A_Amiloride hydrochloride dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222919759-1869895 01A08_rep_A_Amiloride hydrochloride dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_B6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_B6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_E2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_M13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079949/ccms_peak/3D_Mouse_GF_SPF/SPF2/SPF2_Vagina1_GF12_01_22169.mzXML at line 689
Premature end of data in tag mzXML line 2, line 3, column 1 (SPF2_Vagina1_GF12_01_22169.mzXML, line 3)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD5_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124736618-1862628 03E05_rep_B_Flumequinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124736618-1862628 03E05_rep_B_Flumequinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101617747-1869543 07H05_rep_C_Tolazamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101617747-1869543 07H05_rep_C_Tolazamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223714709-2227596 pooled.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_31.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113457232-1922472 2_C10_IZH2_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113457232-1922472 2_C10_IZH2_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150641716-1864905 02A11_rep_C_Pindololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150641716-1864905 02A11_rep_C_Pindololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_J15_id_MSn_negative.mzML at line 21
index 370 is out of bounds for axis 0 with size 370
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F19_id_MSn_positive.mzML at line 21
index 367 is out of bounds for axis 0 with size 367
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_173.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw3_004.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_mock_d1_291_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML at line 689
Premature end of data in tag msRun line 5, line 29757, column 1 (SysVirol_IFL001_mock_d1_291_lipid__Pos_Gimli_06Sep13_13-07-01.mzXML, line 29757)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_D4_id_MSn_negative.mzML at line 21
index 279 is out of bounds for axis 0 with size 279
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/423.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101523080-1869500 07D02_rep_C_Fluoxetine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101523080-1869500 07D02_rep_C_Fluoxetine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101109572-1869299 07D02_rep_B_Fluoxetine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101109572-1869299 07D02_rep_B_Fluoxetine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_N11_id_MSn_negative.mzML at line 21
index 376 is out of bounds for axis 0 with size 376
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_C6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125019672-1876816 12E03_rep_C_Thioperamide_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125019672-1876816 12E03_rep_C_Thioperamide_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125950413-1863225 04G04_rep_A_Telenzepine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125950413-1863225 04G04_rep_A_Telenzepine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gsk_P3H10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (gsk_P3H10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-193_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152648818-1577017 Batch3_MDAMB157_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample134_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150742602-1924572 2_D1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150742602-1924572 2_D1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_C10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114300607-1874917 12E03_rep_A_Thioperamide_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114300607-1874917 12E03_rep_A_Thioperamide_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_03_leg_skin_control_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_03_leg_skin_control_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1200.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1200.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C8_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088741/ccms_peak/QLTMS2_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1360.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1360.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153122630-1577241 Batch3_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pnuC_P4E9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (pnuC_P4E9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/anhgm_nagZ_P4G4_pHILIC_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (anhgm_nagZ_P4G4_pHILIC_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201257166-1877852 09C06_rep_B_Tetraethylenepentamine_pentahydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201257166-1877852 09C06_rep_B_Tetraethylenepentamine_pentahydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_blood_24h_NEG.mzXML at line 689
attributes construct error, line 41, column 99 (Volunteer4_blood_24h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample038_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00074314.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153239868-1577303 Batch4_DMS114_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/991.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_C4_id_MSn_negative_2.mzML at line 21
index 289 is out of bounds for axis 0 with size 289
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123907162-1876322 08E08_rep_C_Eburnamonine_(-)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123907162-1876322 08E08_rep_C_Eburnamonine_(-)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murQ_P4G2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (murQ_P4G2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G07Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/004_100nMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_O6_id.mzML at line 21
index 507 is out of bounds for axis 0 with size 507
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_060EXLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/35/2fb8d21daf9e6166a20e9b3155fa4e/input_file/QC_20170209_060EXLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093111006-1879141 14A08_rep_C_Piretanideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093111006-1879141 14A08_rep_C_Piretanideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD2_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_03_dorsal_skin_control_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_03_dorsal_skin_control_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224158715-1870474 01C04_rep_D_Sulfadiazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224158715-1870474 01C04_rep_D_Sulfadiazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S005_dilute_190201052410.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_05.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD3_05.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nadC_P6A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (nadC_P6A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223701731-1870245 01D10_rep_C_Diflunisala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223701731-1870245 01D10_rep_C_Diflunisala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_F2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153721682-1868743 06F03_rep_C_Stanozololb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153721682-1868743 06F03_rep_C_Stanozololb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125001687-1862744 03B05_rep_C_Alverine_citrate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125001687-1862744 03B05_rep_C_Alverine_citrate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/038_CRa_H9M5_M470_L14_K3_low_pos.mzXML at line 689
Premature end of data in tag peaks line 15638, line 15642, column 32247 (038_CRa_H9M5_M470_L14_K3_low_pos.mzXML, line 15642)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_RBC_4h_NEG.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer4_RBC_4h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_C22_id_MSn_positive.mzML at line 21
index 508 is out of bounds for axis 0 with size 508
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Neg_131_2A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/499.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100920_36_Blank_.mzXML at line 689
attributes construct error, line 38, column 74 (20100920_36_Blank_.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132922118-1733901 1pool Wound5D 1 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_E18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113114938-1874388 11G03_rep_B_Raloxifene_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113114938-1874388 11G03_rep_B_Raloxifene_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100917_16_RIN_30.mzXML at line 689
attributes construct error, line 38, column 74 (20100917_16_RIN_30.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_D11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OAD1.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_G3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124258262-1862291 03G09_rep_A_Tropicamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124258262-1862291 03G09_rep_A_Tropicamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152759433-1577076 Batch5_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBpumR27_5h2a.mzML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152235840-1868055 05C01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152235840-1868055 05C01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample218_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Ralstonia_pickettii_MSL_336_2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike0_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114107301-1874825 11A04_rep_D_Pyrithyldioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114107301-1874825 11A04_rep_D_Pyrithyldioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/002_Urea_Day4_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_L7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD6_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150510677-1864835 02D02_rep_C_Naloxone hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150510677-1864835 02D02_rep_C_Naloxone hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/141-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dgoT_P3E10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (dgoT_P3E10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201911615-1882131 16A10_rep_D_Ubenimexa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201911615-1882131 16A10_rep_D_Ubenimexa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124340875-1876542 09C06_rep_A_Tetraethylenepentamine_pentahydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124340875-1876542 09C06_rep_A_Tetraethylenepentamine_pentahydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130638923-1877566 13H01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130638923-1877566 13H01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ1_7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J7_id_MSn_positive.mzML at line 21
index 754 is out of bounds for axis 0 with size 754
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121127031-1879336 14A06_rep_D_Sertaconazole_nitratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121127031-1879336 14A06_rep_D_Sertaconazole_nitratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201108574-1877773 09D09_rep_B_Tazobactamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201108574-1877773 09D09_rep_B_Tazobactamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAI03.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/FIL1_50EV_RA1_01_22632.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_55.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_18091336_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O21_id_MSn_negative.mzML at line 21
index 349 is out of bounds for axis 0 with size 349
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR124h2a.mzML at line 689
AttValue: " or ' expected, line 145382, column 115 (pMIBSDR124h2a.mzML, line 145382)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Res_18072701_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130128851-1877324 13A08_rep_B_Gestrinoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130128851-1877324 13A08_rep_B_Gestrinoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_03.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_QC_03.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_D12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_GF7_01_12154.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/627.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152616580-1576990 Batch1_HCC1143_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/125-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/464.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113347092-1922411 2_H1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113347092-1922411 2_H1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_133_2A.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007534_031618-1Thr4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152429777-1576902 Batch2_NCIH2170_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081755.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD3_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153043112-1868427 06D01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153043112-1868427 06D01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_D10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151311198-1576350 Batch7_SNB75_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_N9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_I4_id.mzML at line 21
index 559 is out of bounds for axis 0 with size 559
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_STD6_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092102208-1878669 14F01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092102208-1878669 14F01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_LbUGT_purifiedprotein/mzML/Quercetin_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/thiM_P4A5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (thiM_P4A5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ11131415.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223818345-1870304 01E08_rep_C_Ticlopidine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223818345-1870304 01E08_rep_C_Ticlopidine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_97.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/blank_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00075193.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0020_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0020_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201735867-1882056 16H08_rep_C_Triclabendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201735867-1882056 16H08_rep_C_Triclabendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample104.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152528286-1576950 Batch2_SW900_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hdhA_P3A7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (hdhA_P3A7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHI07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike0_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153819668-1577583 Batch6_HCC1806_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153519695-1577433 Batch4_977_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdpB_#1_P4B12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (kdpB_#1_P4B12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA19.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20201215_LKM_NoBeads_MeOH_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123858345-1876315 08F09_rep_C_Acipimoxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123858345-1876315 08F09_rep_C_Acipimoxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112952561-1874329 11E07_rep_B_Ethynylestradiol_3-methyl_etherb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112952561-1874329 11E07_rep_B_Ethynylestradiol_3-methyl_etherb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223744708-1870278 01H08_rep_C_Prednisoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223744708-1870278 01H08_rep_C_Prednisoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD6_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/203-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112808375-1874248 11A04_rep_A_Pyrithyldionea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112808375-1874248 11A04_rep_A_Pyrithyldionea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/758.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152957185-1577176 Batch3_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD3_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_G13_id_MSn_positive.mzML at line 21
index 575 is out of bounds for axis 0 with size 575
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113139761-1922300 1_C10_IZH2_1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113139761-1922300 1_C10_IZH2_1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/394.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_133.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_A9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H3_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP01_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ3_8 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112450886-1921983 3_G3_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112450886-1921983 3_G3_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_C17_id_MSn_negative.mzML at line 21
index 298 is out of bounds for axis 0 with size 298
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202512799-1878413 10B03_rep_A_Streptozotocinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202512799-1878413 10B03_rep_A_Streptozotocinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112513311-1874109 10D04_rep_D_Demeclocycline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112513311-1874109 10D04_rep_D_Demeclocycline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/265.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_G_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_A16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col2_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB8F10.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121741500-1867091 04F03_rep_C_Trazodone_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121741500-1867091 04F03_rep_C_Trazodone_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-126_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153116414-1868453 06C09_rep_B_Roxatidine_Acetate_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153116414-1868453 06C09_rep_B_Roxatidine_Acetate_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201406535-1877903 09H06_rep_C_Sulfachloropyridazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201406535-1877903 09H06_rep_C_Sulfachloropyridazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person23_RBC_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 81 (Person23_RBC_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample207_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cmoA_P4C7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (cmoA_P4C7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/13_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912120910526-1879233 14G11_rep_D_Parbendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912120910526-1879233 14G11_rep_D_Parbendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/830.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_H_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_H_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/-ve_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180414_ES_H3K_batch7_repC_72.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153537034-1577447 Batch5_NCIH1792_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control53_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Control53_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_D7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 1-PDAC01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysD_P4B12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (cysD_P4B12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mltB_P3H6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (mltB_P3H6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_F4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_E22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GH2_01_17112.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124554465-1862547 03C02_rep_B_Ampyroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124554465-1862547 03C02_rep_B_Ampyroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082793/ccms_peak/raw/MTBLS227/37382-A03-1.mzXML at line 689
Premature end of data in tag peaks line 1447, line 1451, column 97965 (37382-A03-1.mzXML, line 1451)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_QC_06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_H10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_H10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223500352-1870152 01F05_rep_B_Mefenamic acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223500352-1870152 01F05_rep_B_Mefenamic acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD3_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_QC_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165820032-2227527 PAT43.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151358903-1924896 4_A10_SNF3_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151358903-1924896 4_A10_SNF3_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-cc6 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111708294-1921583 1_G2_WT_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111708294-1921583 1_G2_WT_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130615_Pos_133_2B.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151024086-1924711 3_G3_WT_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151024086-1924711 3_G3_WT_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/anmK_#4_P3B1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (anmK_#4_P3B1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_N16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202506383-1878408 10D10_rep_A_Methacholine_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202506383-1878408 10D10_rep_A_Methacholine_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/488-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114706842-1875110 12A03_rep_B_Bemegridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114706842-1875110 12A03_rep_B_Bemegridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151551976-1924987 4_G11_SNF3_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151551976-1924987 4_G11_SNF3_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223945804-2227727 PAT50.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_F6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000088351/ccms_peak/Negative_Veh_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/43-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_F4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130003664-1863236 04G10_rep_A_Amodiaquin_dihydrochloride_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130003664-1863236 04G10_rep_A_Amodiaquin_dihydrochloride_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_P_E3E4_AD_02Feb18_Pippin_AQ-17-12-02.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111902692-1921682 2_A3_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111902692-1921682 2_A3_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample075.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_STD3_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153750795-1868766 06D01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153750795-1868766 06D01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_G8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_E22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06032021_Batch04_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092823554-1879013 14F11_rep_B_Toltrazurilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092823554-1879013 14F11_rep_B_Toltrazurilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153123869-1577242 Batch3_SU8686_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD2_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample033_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/solA_#3_P3H12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (solA_#3_P3H12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_69.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_69.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/grxC_#1_P3A3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (grxC_#1_P3A3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082757/ccms_peak/raw/MTBLS165/LiLi-3d.mzXML at line 689
Premature end of data in tag msRun line 5, line 1638, column 1 (LiLi-3d.mzXML, line 1638)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124745280-1862635 03C09_rep_B_Pentolinium_bitartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124745280-1862635 03C09_rep_B_Pentolinium_bitartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_66.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_D6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/rffG_P3H6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (rffG_P3H6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125647984-1863072 03D11_rep_D_Camptothecine_(S,+)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125647984-1863072 03D11_rep_D_Camptothecine_(S,+)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S46.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S46.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_78.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_78.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113341831-1922406 2_G5_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113341831-1922406 2_G5_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202226647-1882283 16E03_rep_D_Anagrelidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202226647-1882283 16E03_rep_D_Anagrelidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_D7_id_MSn_positive.mzML at line 21
index 491 is out of bounds for axis 0 with size 491
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case103_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case103_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpMat2_P.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lyxK_P4D5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (lyxK_P4D5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G14_id_MSn_negative.mzML at line 21
index 306 is out of bounds for axis 0 with size 306
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112730812-1874218 11H05_rep_A_Theobrominea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112730812-1874218 11H05_rep_A_Theobrominea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/538-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122930463-1880162 15H06_rep_D_Pravastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122930463-1880162 15H06_rep_D_Pravastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_D3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_102.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_102.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mltF_#1_P4D12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024962 (mltF_#1_P4D12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/491-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_96.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152837121-1577108 Batch3_SKLU1_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample215.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152833685-1577105 Batch3_ACHN_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person04_blood_youth_NEG.mzXML at line 689
attributes construct error, line 41, column 101 (Person04_blood_youth_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_I10_id.mzML at line 21
index 515 is out of bounds for axis 0 with size 515
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151151787-1576284 Batch5_MCF7_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114129761-1922815 4_A1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114129761-1922815 4_A1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_STD5_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/relA_P3A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (relA_P3A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STY2_20EV_RA4_01_22501.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_85.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_85.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091702753-1878481 13C06_rep_D_Guaiacolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091702753-1878481 13C06_rep_D_Guaiacolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_H8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E17_id_MSn_negative.mzML at line 21
index 293 is out of bounds for axis 0 with size 293
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_B9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153740336-1577550 Batch6_NCIH82_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122944297-1867670 05H01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122944297-1867670 05H01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224358911-1870569 01D10_rep_D_Diflunisala.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224358911-1870569 01D10_rep_D_Diflunisala.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/772.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A3_id_MSn_negative_20240503174803.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113729328-1922603 3_A7_STE2_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113729328-1922603 3_A7_STE2_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125253763-1876931 12A04_rep_D_Digoxigenina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125253763-1876931 12A04_rep_D_Digoxigenina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_elow.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_B_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_B_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153321623-1577337 Batch5_MCF7_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8G08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_A6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152548758-1576967 Batch1_NCIH1838_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpQ_P4H7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (glpQ_P4H7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201736274-1878057 09D11_rep_C_Warfarinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201736274-1878057 09D11_rep_C_Warfarinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp2/20180309173109163-1989057 skin 5da.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/422.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_17.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_17.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200755493-1881625 16D04_rep_A_Benidipine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200755493-1881625 16D04_rep_A_Benidipine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124235532-1862273 03D04_rep_A_Oxolinic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124235532-1862273 03D04_rep_A_Oxolinic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125317100-1862901 03E05_rep_C_Flumequineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125317100-1862901 03E05_rep_C_Flumequineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_C6_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_69.mzXML at line 689
Premature end of data in tag peaks line 18637, line 18641, column 15939 (20121114_69.mzXML, line 18641)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-cc2 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201629939-1878007 09E10_rep_C_Butylscopolammonium_(n-)_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201629939-1878007 09E10_rep_C_Butylscopolammonium_(n-)_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET131.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET131.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125212834-1876900 12F05_rep_C_Flucytosineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125212834-1876900 12F05_rep_C_Flucytosineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007651_032118-1Thr1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121930799-1867177 04G06_rep_C_Bupivacaine_hydrochloride_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121930799-1867177 04G06_rep_C_Bupivacaine_hydrochloride_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/016_100uMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_7_Liver_Ma_control_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_7_Liver_Ma_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091952837-1878616 13F03_rep_D_Trapidila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091952837-1878616 13F03_rep_D_Trapidila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/017_2500uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150418120705.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/pooled_MSMS_2022_1003_Michael_leming_liver_neg-0012.mzML at line 689
Premature end of data in tag binary line 10441, line 10441, column 895790 (pooled_MSMS_2022_1003_Michael_leming_liver_neg-0012.mzML, line 10441)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_H3_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124358203-1862339 03A11_rep_A_Phenelzine_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124358203-1862339 03A11_rep_A_Phenelzine_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mltA_#1_P4B8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (mltA_#1_P4B8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L9_id_MSn_negative.mzML at line 21
index 360 is out of bounds for axis 0 with size 360
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/LeafTreatedB3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (LeafTreatedB3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153444096-1577404 Batch4_SW780_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_E7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wecB_P4F11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (wecB_P4F11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_STD3_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095905/peak/Set5_mzML/MCMK_RTE2023_Exploris240_161_R1.mzML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (MCMK_RTE2023_Exploris240_161_R1.mzML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nhaB_#1_P4B3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (nhaB_#1_P4B3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101330837-1869412 07E05_rep_B_Tiabendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101330837-1869412 07E05_rep_B_Tiabendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_G12_id_negative.mzML at line 21
index 254 is out of bounds for axis 0 with size 254
Error processing file: /data/datasets/server/MassIVE/MSV000095828/peak/LD1-MS-pos.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aspA_#1_P3G10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (aspA_#1_P3G10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6B05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD3_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092649665-1878941 14D08_rep_B_Formestaneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092649665-1878941 14D08_rep_B_Formestaneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/329.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200710205-1881592 16D03_rep_A_Pidotimodb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200710205-1881592 16D03_rep_A_Pidotimodb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_G8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxL_P3B7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (lpxL_P3B7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_379.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_E_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/msbA_P4F3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (msbA_P4F3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_P7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/285.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084126/ccms_peak/GC_metabolomics_Raw/20160207_KAO_GC_B225A.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000084126/ccms_peak/GC_metabolomics_Raw/20160207_KAO_GC_B225A.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_E5_id_MSn_negative.mzML at line 21
index 335 is out of bounds for axis 0 with size 335
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/moeA_P5A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024982 (moeA_P5A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124241985-1876494 08A03_rep_D_Mevastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124241985-1876494 08A03_rep_D_Mevastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case103_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case103_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121548651-1867002 04E09_rep_B_Spiperonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121548651-1867002 04E09_rep_B_Spiperonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_D_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-std b 00.3a.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narI_P5H8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (narI_P5H8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C5_id_MSn_positive.mzML at line 21
index 663 is out of bounds for axis 0 with size 663
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112939674-1874319 11B05_rep_A_Cefsulodin_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112939674-1874319 11B05_rep_A_Cefsulodin_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124122746-1876430 08H11_rep_D_Sertindolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124122746-1876430 08H11_rep_D_Sertindolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_A_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_LD_411_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/EBM012A.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125411315-1862945 03G05_rep_D_Oxymetazoline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125411315-1862945 03G05_rep_D_Oxymetazoline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_C12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123329616-1876052 08F05_rep_B_Carbidopaa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123329616-1876052 08F05_rep_B_Carbidopaa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151414977-1924910 4_D9_SNF3_10_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151414977-1924910 4_D9_SNF3_10_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121610120-1867019 04G09_rep_B_Pimozideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121610120-1867019 04G09_rep_B_Pimozideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_J21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151703315-1576543 Batch7_SF295_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potA_P3B6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (potA_P3B6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095819/raw/202312_211_PA05_10ppb_1uL.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fecC_#4_P3G4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (fecC_#4_P3G4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E8_id_negative.mzML at line 21
index 231 is out of bounds for axis 0 with size 231
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_C12_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153733149-1577544 Batch6_NCIH526_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-5-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7H02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J16_id_MSn_negative.mzML at line 21
index 342 is out of bounds for axis 0 with size 342
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201732341-1878054 09G11_rep_C_Doxofyllinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201732341-1878054 09G11_rep_C_Doxofyllinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D17_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM5A008.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_E5_id_MSn_negative.mzML at line 21
index 350 is out of bounds for axis 0 with size 350
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_C4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/354.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine71.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-18_Urine71.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_04_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_G8_id_negative.mzML at line 21
index 284 is out of bounds for axis 0 with size 284
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151446892-1576430 Batch6_RPMI8226_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095706/peak/Sample_11_A.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_B_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_sample05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_C10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145659198-1863970 02F01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145659198-1863970 02F01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113605804-1922531 2_A10_IZH2_0_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113605804-1922531 2_A10_IZH2_0_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A20_id.mzML at line 21
index 573 is out of bounds for axis 0 with size 573
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_E3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201213546-1877820 09F03_rep_B_Citalopram_Hydrobromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201213546-1877820 09F03_rep_B_Citalopram_Hydrobromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200747125-1881619 16B03_rep_A_Ezetimibea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200747125-1881619 16B03_rep_A_Ezetimibea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glpC_#4_P5A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (glpC_#4_P5A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoH_P3H7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (nuoH_P3H7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150511937-1864836 02F02_rep_C_Glipizidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150511937-1864836 02F02_rep_C_Glipizidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/temp/SYL-TSQ-13-06-21_L79.mzXML at line 689
Premature end of data in tag msRun line 5, line 550158, column 1 (SYL-TSQ-13-06-21_L79.mzXML, line 550158)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/004_Nitrate_Day17_2_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_D7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096686/ccms_peak/Alb-PDI-plasma-VLDL-28-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aroD_#1_P5D7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (aroD_#1_P5D7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K3_id_MSn_positive.mzML at line 21
index 506 is out of bounds for axis 0 with size 506
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C7_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152139252-1576767 Batch2_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_F10_id_negative.mzML at line 21
index 262 is out of bounds for axis 0 with size 262
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD5_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123343001-1876063 08E08_rep_B_Eburnamonine_(-)b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123343001-1876063 08E08_rep_B_Eburnamonine_(-)b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_RBC_0h_NEG.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer4_RBC_0h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151831732-1576616 Batch7_RXF393_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102034578-1869753 07H09_rep_D_Gliclazidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102034578-1869753 07H09_rep_D_Gliclazidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100927_08_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100927_08_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A2_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD2_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ssuB_P3G3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (ssuB_P3G3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD3_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_B6_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151513152-1576451 Batch6_SR8714_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_71_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/003_1016_2_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082771/raw/raw/MTBLS32/100609fluexpSET1-11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD1_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_A4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130629895-1877559 13G09_rep_C_Benzathine_benzylpenicillina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130629895-1877559 13G09_rep_C_Benzathine_benzylpenicillina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112138093-1873552 10D08_rep_C_Chlorotrianiseneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112138093-1873552 10D08_rep_C_Chlorotrianiseneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_H_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201931950-1882147 16D09_rep_D_Diatrizoic_acid_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201931950-1882147 16D09_rep_D_Diatrizoic_acid_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_04P_A5_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151727105-1576563 Batch4_DU145_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150856853-1865010 02E01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150856853-1865010 02E01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/871.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091825796-1878547 13E01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091825796-1878547 13E01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_I9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/159-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153136117-1577252 Batch4_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201720313-1882044 16F05_rep_C_Histamine_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201720313-1882044 16F05_rep_C_Histamine_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122429469-1879927 15F01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122429469-1879927 15F01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_17111316_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_A6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_26_male_2022_1017_Michael_neg-0.0050.mzML at line 689
Premature end of data in tag binary line 20947, line 20947, column 6801 (4_26_male_2022_1017_Michael_neg-0.0050.mzML, line 20947)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_F10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095328/peak/MS_RAW_data/230811_BBT301_TPP_HighPH_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case251_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case251_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case256_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case256_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_K21_id_MSn_positive.mzML at line 21
index 711 is out of bounds for axis 0 with size 711
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/601.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009388_IBD200_E3_A3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHG12.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_72.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A4_id_negative_20230130215754.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ctrl_1_P4A1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (ctrl_1_P4A1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample019.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180427_ES_H3K_batch3_repA_35.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112721528-1922115 4_G1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112721528-1922115 4_G1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202511580-1878412 10B03_rep_A_Streptozotocina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202511580-1878412 10B03_rep_A_Streptozotocina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150135113-1864189 02B10_rep_B_Mianserine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150135113-1864189 02B10_rep_B_Mianserine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_blank_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201057505-1877765 09F10_rep_B_Hexestrolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201057505-1877765 09F10_rep_B_Hexestrolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_0123_190123201150.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/umpH_P3D4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (umpH_P3D4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_12P_E12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_G1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153138637-1577254 Batch4_NCIH2009_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153022444-1577195 Batch3_647V_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123136512-1867755 05E01_rep_B_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123136512-1867755 05E01_rep_B_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_F4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153346556-1577357 Batch4_NCIH2126_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153215063-1577283 Batch4_MDAMB231_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125308513-1862894 03H04_rep_C_Hyoscyamine_(L)_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125308513-1862894 03H04_rep_C_Hyoscyamine_(L)_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152810299-1868311 06H08_rep_A_Progesteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152810299-1868311 06H08_rep_A_Progesteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample138.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_D_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_E_D_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153155622-1868483 06G06_rep_B_Tosufloxacin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153155622-1868483 06G06_rep_B_Tosufloxacin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/argH_P5H4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (argH_P5H4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/817.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153540478-1577450 Batch4_DU145_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130702652-1877585 13D04_rep_C_Ribavirina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130702652-1877585 13D04_rep_C_Ribavirina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007730_032318-0.01Thr4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_204.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GE1_01_17068.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122304686-1867348 04H05_rep_D_Enalapril_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122304686-1867348 04H05_rep_D_Enalapril_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated8hC3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated8hC3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152931233-1577154 Batch5_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR17_5h1a.mzML at line 689
error parsing attribute name, line 228138, column 28 (pBlateR17_5h1a.mzML, line 228138)
Error processing file: /data/datasets/server/MassIVE/MSV000080948/raw/raw/MTBLS243/26_D25062013T0004_1399CBU_0019_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/search/MpTen2_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_A11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/830.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200910049-1881680 16F01_rep_A_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200910049-1881680 16F01_rep_A_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mepM_P3C7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (mepM_P3C7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Cate_18092931_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28022021_Batch02_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151916110-1576653 Batch5_COLO205_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180430_ES_H3K_batch4_repA_62.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_95.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113329144-1874495 11H10_rep_B_Rabeprazole_Sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113329144-1874495 11H10_rep_B_Rabeprazole_Sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153123869-1577242 Batch3_SU8686_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_337.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample067_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153552486-1577460 Batch5_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080962/ccms_peak/peaks/Person1_RBC_POS.mzXML at line 689
attributes construct error, line 38, column 71 (Person1_RBC_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_C_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222923754-1869898 01F07_rep_A_Sulpirideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222923754-1869898 01F07_rep_A_Sulpirideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHF12.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007499_031618-Unst6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD2_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_K5_id_MSn_positive.mzML at line 21
index 509 is out of bounds for axis 0 with size 509
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_46_B_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/2_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_sample12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/treC_P3G9_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024985 (treC_P3G9_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_N7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C1_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_F22_id_MSn_positive.mzML at line 21
index 419 is out of bounds for axis 0 with size 419
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_11_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152634617-1577005 Batch2_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_108.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S30.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S30.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087689/ccms_peak/Hela_bulk/OR11_20160122_PG_HeLa_CVB3_CT_C.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150618003-1864887 02G06_rep_C_Chlortetracycline hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150618003-1864887 02G06_rep_C_Chlortetracycline hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hycE_P3B11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (hycE_P3B11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089838/ccms_peak/S1cells_6_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100203664-1868864 06A03_rep_D_Haloproginb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100203664-1868864 06A03_rep_D_Haloproginb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_D18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130121056-1863299 04G05_rep_A_Econazole_nitrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130121056-1863299 04G05_rep_A_Econazole_nitrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/180-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080071/ccms_peak/Dataset 1/Positive2/NZ Lichen_P_1_lichen_12_F 1_GF7_01_24973.mzXML at line 103
The truth value of an array with more than one element is ambiguous. Use a.any() or a.all()
Error processing file: /data/datasets/server/MassIVE/MSV000097301/ccms_peak/skin_exp1/20170207132932039-1733909 1fb Wound5D 3 1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151818607-1576605 Batch4_HS578T_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_D_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_D_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125724930-1863103 03B01_rep_D_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125724930-1863103 03B01_rep_D_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/TestMix21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093119972-1879148 14C05_rep_C_Meprylcaine_hydrochloride_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093119972-1879148 14C05_rep_C_Meprylcaine_hydrochloride_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_F2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/phnM_#1_P5E10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (phnM_#1_P5E10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224118252-1870442 01H10_rep_D_Diphemanil methylsulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224118252-1870442 01H10_rep_D_Diphemanil methylsulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153704312-1577520 Batch4_977_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.hyg_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/005_200nMAAcali_30ugmLIS_SRM_Col1_JX_04152015_150417164023.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.MG1_MS_E.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/007_1uMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_L6_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD4_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murF_P4H7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (murF_P4H7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_I21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_73_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mhpE_P3G11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (mhpE_P3G11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_11P_A2_id_negative.mzML at line 21
index 166 is out of bounds for axis 0 with size 166
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101938255-1869707 07B08_rep_D_Vancomycin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101938255-1869707 07B08_rep_D_Vancomycin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fabI_P4F8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (fabI_P4F8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_aqueous_longstudy_230215_181.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_D22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2C05Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_A_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122242437-1867330 04E04_rep_D_Homochlorcyclizine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122242437-1867330 04E04_rep_D_Homochlorcyclizine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_E7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150144483-1864677 02B09_rep_B_Acetylsalicylsalicylic acidb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150144483-1864677 02B09_rep_B_Acetylsalicylsalicylic acidb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2E01Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095337/peak/8_1 TR.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/S.gris_MS_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_135b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-013.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-013.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/685.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_A15_id.mzML at line 21
index 514 is out of bounds for axis 0 with size 514
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8A09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201849286-1878112 09G02_rep_D_Trihexyphenidyl-D,L_Hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201849286-1878112 09G02_rep_D_Trihexyphenidyl-D,L_Hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007609_032118-Unst1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125242324-1862873 03B01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125242324-1862873 03B01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1207.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1207.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nuoK_P5A10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (nuoK_P5A10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyaB_P5C11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024903 (hyaB_P5C11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092239768-1878746 14H10_rep_A_Clocortolone_pivalatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092239768-1878746 14H10_rep_A_Clocortolone_pivalatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_G10_p.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095536/peak/LC-MS2_BigScreen/26dapLL_dapE_P5B12_pHILIC_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024901 (26dapLL_dapE_P5B12_pHILIC_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_04.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_04.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D3_postFOS_3_Neg.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control173_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control173_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_G6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_1_Blood_HO_control_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_1_Blood_HO_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_G_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091943797-1878609 13A02_rep_D_Denatonium_benzoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091943797-1878609 13A02_rep_D_Denatonium_benzoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082804/raw/TCH1516_All_Data/LC-MS_Data/TCH1516_RPMI_+Polarity/mzXML_Formatted_Data/COM5_TCH1516_RPMI_Samp03_T1o5_GC3_01_5651.mzXML at line 88
Incorrect padding
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/wzzE_#2_P5F11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (wzzE_#2_P5F11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7F12_160604123059.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD1_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151545784-1924982 4_H5_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151545784-1924982 4_H5_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153807826-1577573 Batch6_NCIH82_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_70.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/002_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/237.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/438.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180914_ES_H3K_batch2_repC_22.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_83.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_D7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_J15_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2B08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P10_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909102108601-1869781 07C06_rep_D_Metaproterenol_sulfate,_orciprenaline_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909102108601-1869781 07C06_rep_D_Metaproterenol_sulfate,_orciprenaline_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glk_P4B2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024908 (glk_P4B2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L60.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/SYL-TSQ-13-06-21_L60.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ09081438.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_E_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_1_B_rep_3_B-E7_1_5551.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_C_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike1_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_A7_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_H14_id_MSn_negative.mzML at line 21
index 293 is out of bounds for axis 0 with size 293
Error processing file: /data/datasets/server/MassIVE/MSV000080927/ccms_peak/peaks/130727_HILIC_Neg_120_1C.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082735/ccms_peak/ST000664/EX00347-lipidomics/Raw data/POS/BATCH3/20150406_Authentic.mzXML at line 689
Extra content at the end of the document, line 50730, column 1 (20150406_Authentic.mzXML, line 50730)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/OS2AA18.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202119813-1878229 09H03_rep_D_Benzocaineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202119813-1878229 09H03_rep_D_Benzocaineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125514983-1877039 12G09_rep_D_Timolol_maleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125514983-1877039 12G09_rep_D_Timolol_maleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_H4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_K15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223029964-1869947 01B07_rep_A_Sulfathiazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223029964-1869947 01B07_rep_A_Sulfathiazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082912/raw/15NEGMSMS20_25_30eV.mzML at line 689
Premature end of data in tag binary line 11084, line 11084, column 109671 (15NEGMSMS20_25_30eV.mzML, line 11084)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_M16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113033069-1922243 1_B8_IZH2_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113033069-1922243 1_B8_IZH2_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_E10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_H20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/968.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_D_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_29_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094355/raw/itaconate_mzML/Blank3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI4b_5_22_1_891.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151135737-1576271 Batch5_LUDLU1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GD2_01_11496.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_128.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GE5_01_17073.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000084449/raw/Golden-GNPS.mzXML at line 689
AttValue: ' expected, line 22260, column 36 (Golden-GNPS.mzXML, line 22260)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124126380-1876433 08F03_rep_D_Fenipentolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124126380-1876433 08F03_rep_D_Fenipentolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201611261-1881992 16E02_rep_C_Cefuroxime_axetilb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201611261-1881992 16E02_rep_C_Cefuroxime_axetilb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000091568/peak/mzML_4/QC-Mix_16.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000091568/peak/mzML_4/QC-Mix_16.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153620083-1577483 Batch4_977_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike5_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223828295-2227660 PAT45.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GB5_01_16921.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD2_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_15102011_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_D8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151855662-1576636 Batch5_HCC1187_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_10P_G7_id_negative.mzML at line 21
index 238 is out of bounds for axis 0 with size 238
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/340.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ybcF_P3A3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (ybcF_P3A3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_K17_id_MSn_negative.mzML at line 21
index 343 is out of bounds for axis 0 with size 343
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130019446-1863248 04G07_rep_A_Clemastine_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130019446-1863248 04G07_rep_A_Clemastine_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_E6_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_cc3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152513843-1576938 Batch2_OVCAR8_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person27_RBC_youth_POS.mzXML at line 689
attributes construct error, line 41, column 81 (Person27_RBC_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100907552-1869202 07B08_rep_A_Vancomycin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100907552-1869202 07B08_rep_A_Vancomycin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A2_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_14.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_QC_14.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc018_neg.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc018_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150402639-1924384 1_H10_RGT2_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150402639-1924384 1_H10_RGT2_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/maeA_P3B2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (maeA_P3B2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/artM_P3A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024980 (artM_P3A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092832662-1879020 14C08_rep_B_Ticarcillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092832662-1879020 14C08_rep_B_Ticarcillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151039725-1865090 02E09_rep_D_Spironolactonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151039725-1865090 02E09_rep_D_Spironolactonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152455766-1576923 Batch1_CALU3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/744.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Blank_pesticide_170403222027.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysC_P5B11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (cysC_P5B11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/raw/Bacillus_mzML/pBsubR13h3b.mzML at line 689
Unescaped '<' not allowed in attributes values, line 38198, column 179 (pBsubR13h3b.mzML, line 38198)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130144577-1877336 13F10_rep_B_Tribenosideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130144577-1877336 13F10_rep_B_Tribenosideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202046222-1878203 09C04_rep_D_Zileutonb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202046222-1878203 09C04_rep_D_Zileutonb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_F14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GA10_01_11624.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121914413-1867164 04H04_rep_C_Trifluoperazine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121914413-1867164 04H04_rep_C_Trifluoperazine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124612377-1862561 03H06_rep_B_Carmofurb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124612377-1862561 03H06_rep_B_Carmofurb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_394.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_H15_id_MSn_positive.mzML at line 21
index 479 is out of bounds for axis 0 with size 479
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_D21_id.mzML at line 21
index 517 is out of bounds for axis 0 with size 517
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130015680-1877270 13D08_rep_A_Fluticasone_propionateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130015680-1877270 13D08_rep_A_Fluticasone_propionateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114949217-1875240 12H07_rep_B_Megestrol_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114949217-1875240 12H07_rep_B_Megestrol_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_F16_id.mzML at line 21
index 497 is out of bounds for axis 0 with size 497
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_J22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151721158-1576558 Batch3_J82_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_SERUM_V5_CAT.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_85.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130116224-1877314 13C11_rep_B_Phenylbutazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130116224-1877314 13C11_rep_B_Phenylbutazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw6_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912202142984-1882249 16E08_rep_D_Pregabalina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912202142984-1882249 16E08_rep_D_Pregabalina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_A_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124437925-1876589 09G11_rep_A_Doxofyllineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124437925-1876589 09G11_rep_A_Doxofyllineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_H_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223638242-1870227 01E09_rep_C_Dicyclomine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223638242-1870227 01E09_rep_C_Dicyclomine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114103792-1922792 4_A5_WT_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114103792-1922792 4_A5_WT_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125820214-1863149 04F04_rep_A_Glafenine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125820214-1863149 04F04_rep_A_Glafenine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114512806-1875024 12D03_rep_A_Monobenzonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114512806-1875024 12D03_rep_A_Monobenzonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_F20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124552417-1876645 09E07_rep_A_Tigecyclineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124552417-1876645 09E07_rep_A_Tigecyclineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_D_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152454545-1576922 Batch1_CALU3_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_166.mzXML at line 689
Premature end of data in tag peaks line 19963, line 19967, column 3655 (20121114_166.mzXML, line 19967)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case84_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case84_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153852676-1577611 Batch6_NCIH1299_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122643256-1867525 05C03_rep_A_Methapyrilene_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122643256-1867525 05C03_rep_A_Methapyrilene_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125832399-1863159 04D08_rep_A_Labetalol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125832399-1863159 04D08_rep_A_Labetalol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S0_0123.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_C_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_05_F4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123116588-1875945 08D11_rep_A_Zopicloneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123116588-1875945 08D11_rep_A_Zopicloneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/870.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111841508-1921664 2_G5_WT_10000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111841508-1921664 2_G5_WT_10000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ6_5 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/SEE1_50EV_RA4_01_22732.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190128_ES_H3K_batch15_repB_218.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-064_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample005.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/146-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153922463-1577636 Batch6_NCIH146_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112133933-1921811 2_G9_GAP1_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112133933-1921811 2_G9_GAP1_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Nar_15102101_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_G4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw2_002.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_054EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/96/95b62217bcb4a2cb63dc4a60bd74d4/input_file/QC_20170207_054EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET96.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET96.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N15_id_MSn_positive.mzML at line 21
index 683 is out of bounds for axis 0 with size 683
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201427783-1881917 16G11_rep_C_Latanoprosta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201427783-1881917 16G11_rep_C_Latanoprosta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907130052473-1863275 04B05_rep_A_Nortriptyline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907130052473-1863275 04B05_rep_A_Nortriptyline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P1_B6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130244956-1877383 13B06_rep_B_Naftopidil_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130244956-1877383 13B06_rep_B_Naftopidil_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/445.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202019383-1878182 09C11_rep_D_Irsogladine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202019383-1878182 09C11_rep_D_Irsogladine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200744278-1881617 16G04_rep_A_Tolterodine_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200744278-1881617 16G04_rep_A_Tolterodine_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hyaC_P3A12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (hyaC_P3A12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/srlE_#1_P4B12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (srlE_#1_P4B12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_QC_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/A9_black_P1-A-9_01_22960.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_35.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR27_5h2a.mzML at line 689
Opening and ending tag mismatch: binaryDataArray line 280956 and spectrum, line 280991, column 20 (pBlateR27_5h2a.mzML, line 280991)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gshB_P4D9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (gshB_P4D9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_174.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_174.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_14_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_C18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAJ02.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_G_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124624664-1876670 09H11_rep_A_Cefuroxime_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124624664-1876670 09H11_rep_A_Cefuroxime_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/Serratia_sp_EB1H004B.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_L16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113132845-1874402 11A07_rep_B_Trimipramine_maleate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113132845-1874402 11A07_rep_B_Trimipramine_maleate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080285/ccms_peak/20150529_StrainVsBsPa_Black5&10mm_mzXML/Pa_black_P1-A-2_01_23052.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152434733-1868145 05B09_rep_D_N6-methyladenosineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152434733-1868145 05B09_rep_D_N6-methyladenosineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112536566-1922023 4_E2_WT_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112536566-1922023 4_E2_WT_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111835844-1872062 10D02_rep_C_Terazosin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111835844-1872062 10D02_rep_C_Terazosin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_G_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_J16_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/setB_P4C5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (setB_P4C5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_B11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201756105-1878072 09F07_rep_D_Ethotoina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201756105-1878072 09F07_rep_D_Ethotoina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/C2C12_3_RESV_0uM_NEG.mzXML at line 689
attributes construct error, line 38, column 81 (C2C12_3_RESV_0uM_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151954088-1576684 Batch1_MDAMB231_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_22_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201659285-1882028 16H09_rep_C_Brimonidine_L-Tartrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201659285-1882028 16H09_rep_C_Brimonidine_L-Tartrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_195.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_G_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_G_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152647595-1577016 Batch3_MDAMB157_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121155328-1879357 14H02_rep_D_Mecamylamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121155328-1879357 14H02_rep_D_Mecamylamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087805/ccms_peak/Media_R1_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 Column1_test_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_QC_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180501_ES_H3K_batch4_repD_62.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094792/raw/raw_files/Dicotella.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control96_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control96_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_75_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5H08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-cc7 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNQ329_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ7_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/glcB_#2_P4E2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (glcB_#2_P4E2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222950303-1869918 01B09_rep_A_Idoxuridineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222950303-1869918 01B09_rep_A_Idoxuridineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_171.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180902_ES_H3K_batch1_repB_7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121352396-1879444 15C01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121352396-1879444 15C01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ09031451.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153542898-1577452 Batch4_NCIH1563_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD3_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P4_id_MSn_negative.mzML at line 21
index 366 is out of bounds for axis 0 with size 366
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0036_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fadE_#1_P4H2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024963 (fadE_#1_P4H2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_F5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_C_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114332511-1922925 4_E8_STE2_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114332511-1922925 4_E8_STE2_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_E9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_64.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-faux (6).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc014_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Controlcc014_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111637501-1921557 1_H8_GAP1_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111637501-1921557 1_H8_GAP1_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0015_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0015_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Kideny_raw files/ISAS_Lumos_kidney_QC2.mzML at line 689
Premature end of data in tag spectrumList line 92, line 52190, column 1 (ISAS_Lumos_kidney_QC2.mzML, line 52190)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201851253-1882115 16F09_rep_D_Valdecoxiba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201851253-1882115 16F09_rep_D_Valdecoxiba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpxK_#4_P4A11_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024961 (lpxK_#4_P4A11_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K18_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_78.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/006_500nMAAcali_30ugmLIS_SRM_Col1_JX_04102015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GB3_01_17150.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI5_5_12_1_881.mzML at line 689
Premature end of data in tag binary line 6969147, line 6969147, column 262748 (50130_microPOTS_Rat_Brain_ROI5_5_12_1_881.mzML, line 6969147)
Error processing file: /data/datasets/server/MassIVE/MSV000086335/ccms_peak/Endophytic fungi CarGL/GNPS endophytic fungi CarGL/Arroz - MSConvert/22Apos.mzML at line 689
Extra content at the end of the document, line 51449, column 1 (22Apos.mzML, line 51449)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201833535-1882101 16E06_rep_D_Phenothiazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201833535-1882101 16E06_rep_D_Phenothiazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151455161-1576437 Batch6_OVCAR3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_K13_id_MSn_negative.mzML at line 21
index 326 is out of bounds for axis 0 with size 326
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gltK_#4_P3A12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (gltK_#4_P3A12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_B_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152954831-1577174 Batch3_SU8686_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_A3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_B17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_13_RIN_20.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_13_RIN_20.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_31_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152046086-1576725 Batch1_HCC1937_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092939833-1879074 14H02_rep_C_Mecamylamine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092939833-1879074 14H02_rep_C_Mecamylamine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130618569-1877550 13B10_rep_C_Ozagrel_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130618569-1877550 13B10_rep_C_Ozagrel_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1E03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097739/peak/C15_2 MSMS neg.mzML at line 640
'selectedIonList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112012630-1873004 10F03_rep_C_Leflunomidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112012630-1873004 10F03_rep_C_Leflunomidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-med19.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hA3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hA3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kdgT_P3A3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (kdgT_P3A3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/189-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A19_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw6_001.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/001_FC_1_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-079_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_C_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_H_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112333305-1921915 3_G8_GPR1_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112333305-1921915 3_G8_GPR1_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_STD4_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-qc_elow (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_74_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_B9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1G08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_78.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/642.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_62.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180418_ES_H3K_batch6_repB_95.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_94.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/MS/TAA486_MS_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_L8_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_N18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150814402-1924599 2_H10_RGT2_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150814402-1924599 2_H10_RGT2_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151740334-1576574 Batch3_NCIH2228_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_BD4_01_17269.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101415951-1869448 07C08_rep_C_Sibutramine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101415951-1869448 07C08_rep_C_Sibutramine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_D24_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H13_id.mzML at line 21
index 535 is out of bounds for axis 0 with size 535
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_B20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-052_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_57.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_A4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S115.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S115.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121807106-1879637 15G05_rep_B_Olmesartanb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121807106-1879637 15G05_rep_B_Olmesartanb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_15P_G2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080952/ccms_peak/peaks/Person10_plasma_elder_NEG.mzXML at line 689
attributes construct error, line 41, column 90 (Person10_plasma_elder_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087806/ccms_peak/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1586.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1586.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_sample11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gcvH_P3F12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (gcvH_P3F12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_F14_id_MSn_positive.mzML at line 21
index 430 is out of bounds for axis 0 with size 430
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151235436-1924824 3_B9_SNF3_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151235436-1924824 3_B9_SNF3_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/001_Nitrate_Day4_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092900817-1879043 14D03_rep_C_Lansoprazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092900817-1879043 14D03_rep_C_Lansoprazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C21_id_MSn_positive.mzML at line 21
index 723 is out of bounds for axis 0 with size 723
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_P10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_03P_A12_id_negative.mzML at line 21
index 258 is out of bounds for axis 0 with size 258
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_23_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210119_LKM_yeast_nBut_20to1_3.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_B_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_F8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153329021-1577343 Batch4_CAKI1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122724905-1880063 15F05_rep_D_Ibudilastb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122724905-1880063 15F05_rep_D_Ibudilastb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Baicalein_16061440_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_O20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/4_36_male_2022_1017_Michael_neg-0.0062.mzML at line 689
Premature end of data in tag binary line 22511, line 22511, column 298994 (4_36_male_2022_1017_Michael_neg-0.0062.mzML, line 22511)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/831.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_B18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_B_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094756/peak/02_TO_mPlasma_CROT_main_TOP_neg_HILIC.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/985.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122104221-1867251 04H09_rep_C_Quinacrine_dihydrochloride_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122104221-1867251 04H09_rep_C_Quinacrine_dihydrochloride_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089513/peak/ZZ_Primary_metabolites/Corn_Batch3_OD2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA21.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/znuA_#1_P4B10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (znuA_#1_P4B10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_C_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180412_ES_H3K_batch7_repB_81.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_F14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/490-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000096497/peak/20201208_ProgressCurveAnalysis_AceB_set6_eff12_t1_rep1.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000096497/peak/20201208_ProgressCurveAnalysis_AceB_set6_eff12_t1_rep1.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_G9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112139319-1873553 10D01_rep_C_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112139319-1873553 10D01_rep_C_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Acido_24297_M1+.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_30_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_QC_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (29).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GA9_01_11623.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR13h2a.mzML at line 689
Opening and ending tag mismatch: binary line 87562 and spectrum, line 87596, column 20 (pBlateR13h2a.mzML, line 87596)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_E_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-faux (4).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_J14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_STD2_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_D12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_C_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_H_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_H_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_F9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_P5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000092259/ccms_peak/Sample0002.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_46.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_0126_190127180454.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082797/ccms_peak/raw/MTBLS368/TQ09111403.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150251334-1864728 02H01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150251334-1864728 02H01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_A_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control149_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control149_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Casecc056_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Casecc056_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_C10_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C6_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121757891-1879630 15D10_rep_B_Anthralina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121757891-1879630 15D10_rep_B_Anthralina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170127_025ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/dd/009f33f5b9edb0e1460a631650a718/input_file/MMW6_20170127_025ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201824788-1882094 16G05_rep_C_Lomerizine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201824788-1882094 16G05_rep_C_Lomerizine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125722613-1877137 13G11_rep_A_Torsemidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125722613-1877137 13G11_rep_A_Torsemidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/006_CRa_H9M5_M470_H01_K1_low_pos.mzXML at line 689
Premature end of data in tag peaks line 13947, line 13951, column 15863 (006_CRa_H9M5_M470_H01_K1_low_pos.mzXML, line 13951)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125126556-1876865 12D10_rep_C_Bacitracina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125126556-1876865 12D10_rep_C_Bacitracina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD6_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_02_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/180-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C13_id_MSn_negative.mzML at line 21
index 271 is out of bounds for axis 0 with size 271
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5E13.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123508026-1876132 08D06_rep_B_Exemestanea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123508026-1876132 08D06_rep_B_Exemestanea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112040357-1873026 10E05_rep_C_Furaltadone_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112040357-1873026 10E05_rep_C_Furaltadone_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112515747-1874111 10G01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112515747-1874111 10G01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_POSITIVE_24MAY_23/Ref_1_B_rep_1_B-D2_1_5663.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152414934-1868130 05B03_rep_D_Practolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152414934-1868130 05B03_rep_D_Practolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151400461-1576391 Batch7_KM12_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_E2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_21.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_blank_21.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GD9_01_11505.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_02P_G9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_B12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_32_G_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/113.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_107.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD1_09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G10Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_50_B_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tnaB_P4D8_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (tnaB_P4D8_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_B13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200732890-1881609 16A10_rep_A_Ubenimexa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200732890-1881609 16A10_rep_A_Ubenimexa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113213543-1874434 11B03_rep_B_Cromolyn_disodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113213543-1874434 11B03_rep_B_Cromolyn_disodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153249726-1577311 Batch5_EBC1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201819881-1878090 09G01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201819881-1878090 09G01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100802134-1869150 07A08_rep_A_Daunorubicin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100802134-1869150 07A08_rep_A_Daunorubicin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_C_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD6_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007675_032118-1CRP3_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/raw/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_14.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_14.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_H17_id_MSn_positive.mzML at line 21
index 670 is out of bounds for axis 0 with size 670
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/795.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125225090-1862859 03G09_rep_C_Tropicamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125225090-1862859 03G09_rep_C_Tropicamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_QC_15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D1_preFOS_2_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093229236-1879204 14G02_rep_C_Perindoprila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093229236-1879204 14G02_rep_C_Perindoprila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_F_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_75.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/855.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151449273-1576432 Batch7_KM12_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_K15_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_35_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/purC_#1_P5B10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (purC_#1_P5B10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/191-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223820508-2227653 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/706.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122110529-1867256 04H02_rep_C_Ifenprodil_tartratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122110529-1867256 04H02_rep_C_Ifenprodil_tartratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_SERUM_V8_CAT.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201341048-1881882 16B04_rep_B_Rizatriptan_benzoateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201341048-1881882 16B04_rep_B_Rizatriptan_benzoateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fucP_P4E6_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (fucP_P4E6_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_FCX_05_728_prot_53_IMS_15Feb18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3H07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/STE1_40EV_RA2_01_22713.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170207_031EXMN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/e0/79dc964e375270264a4bf0b134340c/input_file/MMW6_20170207_031EXMN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_82.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample149.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH7_20170125_023EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/16/122ba950c8d0ff1ebcda8bd3c6b404/input_file/SH7_20170125_023EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152326645-1576852 Batch2_NCIH226_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223943275-2227725 PAT40.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153329458-1868557 06B02_rep_B_Androsteroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153329458-1868557 06B02_rep_B_Androsteroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_8_Blood_Ma_control_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_8_Blood_Ma_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_C19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_192.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_H12_id_MSn_positive.mzML at line 21
index 428 is out of bounds for axis 0 with size 428
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125011330-1876810 12D08_rep_C_Flurbiprofena.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125011330-1876810 12D08_rep_C_Flurbiprofena.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223727493-2227607 PAT51.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_E4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151832912-1576617 Batch7_RXF393_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150533986-1924461 1_F1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150533986-1924461 1_F1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_B12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_B_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7H12_160604182107.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000081119/ccms_peak/Beers19_ms2ldaPLUS/NEGmode/Beer_multibeers_9_fullscan1.mzXML at line 689
Premature end of data in tag peaks line 24491, line 24495, column 13711 (Beer_multibeers_9_fullscan1.mzXML, line 24495)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lacZ_P3E10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (lacZ_P3E10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_F4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_O7_id_MSn_negative.mzML at line 21
index 306 is out of bounds for axis 0 with size 306
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_03_F8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152541462-1576961 Batch1_CALU3_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085783/ccms_peak/raw/CCWB_oxidativestress_180315_24.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085927/peak/Pos_Ctrl_123_Cage-1_3.mzXML at line 835
list index out of range
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_I20_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Pool_8_B-A2_1_5840.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180915_ES_H3K_batch2_repA_29.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201326761-1877874 09A02_rep_B_Sulmazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201326761-1877874 09A02_rep_B_Sulmazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091760/raw/TC5_pellet.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_H_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_H_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_B22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/CVP_B_rep_1_B-D9_1_5858.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_73_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_125a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124309493-1862300 03C05_rep_A_Methocarbamolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124309493-1862300 03C05_rep_A_Methocarbamolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153151190-1577264 Batch4_A427_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_G3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_K7_id_MSn_positive.mzML at line 21
index 543 is out of bounds for axis 0 with size 543
Error processing file: /data/datasets/server/MassIVE/MSV000087806/raw/RIGHT_SSL_EI_WO_sleep_10dg_min_35-290_as_needle_split50/04_05_2012_1708.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1708.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151207221-1576297 Batch5_NCIH345_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/003_Ammonia_Day14_3_Col1_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_E5_id_positive.mzML at line 21
index 370 is out of bounds for axis 0 with size 370
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD5_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_F2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD4_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122941760-1867668 05G11_rep_B_Fusidic_acid_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122941760-1867668 05G11_rep_B_Fusidic_acid_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_rep3-L11 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009736_IBD200_E20_B4.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_02_C9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125940843-1877244 13H10_rep_A_Levocabastine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125940843-1877244 13H10_rep_A_Levocabastine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111811589-1872043 10B03_rep_C_Streptozotocinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111811589-1872043 10B03_rep_C_Streptozotocinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GE3_01_11685.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_J18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBsubR23h3b.mzML at line 689
Opening and ending tag mismatch: binary line 10474 and binaryDataArray, line 10477, column 31 (pBsubR23h3b.mzML, line 10477)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/nhaA_P4A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (nhaA_P4A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_16.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD5_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/07JAN2021_PLASMA_Extraction_Compare_IPA_24hr_exposure_reinject_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223525069-1870171 01E09_rep_B_Dicyclomine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223525069-1870171 01E09_rep_B_Dicyclomine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_D9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malQ_#1_P5E5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024975 (malQ_#1_P5E5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151703315-1576543 Batch7_SF295_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-21.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170209_044ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/20/0c022b19ad46959ad64eb354f1fbac/input_file/MMW3_20170209_044ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2E07P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_QC_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Liver_raw files/Lumos_ISAS_liver_unLabeled_1.mzML at line 689
Premature end of data in tag spectrumList line 92, line 42103, column 1 (Lumos_ISAS_liver_unLabeled_1.mzML, line 42103)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152045069-1867968 05H04_rep_C_Hemicholinium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152045069-1867968 05H04_rep_C_Hemicholinium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_RBC_0h_POS.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer3_RBC_0h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_A9_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_A_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_F6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151914903-1576652 Batch5_COLO205_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case195_neg.mzXML at line 689
attributes construct error, line 37, column 69 (Case195_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000080946/ccms_peak/peaks/60-4_idMsMs_25min_30eV_GE5_01_4256.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/60-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_E7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151929045-1576664 Batch7_NCIH510_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ilvA_#1_P4G12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (ilvA_#1_P4G12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000088068/raw/AH009_Phaeo_Cont_R2.mzML at line 689
Specification mandates value for attribute 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, line 134590, column 846 (AH009_Phaeo_Cont_R2.mzML, line 134590)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_19_Dorsal_skin_EtOH_control_NEG.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_19_Dorsal_skin_EtOH_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GG1_01_17097.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223846481-2227676 Healthy4.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201500879-1881942 16H01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201500879-1881942 16H01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH49.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114935390-1875229 12H03_rep_B_Toremifeneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114935390-1875229 12H03_rep_B_Toremifeneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113903180-1922685 3_A9_STE2_0_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113903180-1922685 3_A9_STE2_0_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111939509-1921713 2_G8_GAP1_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111939509-1921713 2_G8_GAP1_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095362/raw/MS2_VcR_1_18_1_7789.mzML at line 689
Premature end of data in tag chromatogramList line 683090, line 683091, column 1 (MS2_VcR_1_18_1_7789.mzML, line 683091)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224315488-1870534 01E08_rep_D_Ticlopidine hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224315488-1870534 01E08_rep_D_Ticlopidine hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_F_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121229730-1879383 14D10_rep_D_Methicillin_sodiumb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121229730-1879383 14D10_rep_D_Methicillin_sodiumb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152332447-1868098 05D02_rep_D_Chlorthalidonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152332447-1868098 05D02_rep_D_Chlorthalidonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153407196-1577374 Batch3_KNS62_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_C3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201829151-1878097 09G03_rep_D_Succinylsulfathiazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201829151-1878097 09G03_rep_D_Succinylsulfathiazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201152972-1877805 09G10_rep_B_Trioxsalenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201152972-1877805 09G10_rep_B_Trioxsalenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S37.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S37.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_81.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_B12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_41_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113408986-1922430 2_C3_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113408986-1922430 2_C3_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125956373-1863230 04D02_rep_A_Vincaminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125956373-1863230 04D02_rep_A_Vincaminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111655024-1921572 1_B4_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111655024-1921572 1_B4_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_D10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_G8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150737938-1864949 02E06_rep_C_Perphenazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150737938-1864949 02E06_rep_C_Perphenazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150556175-1924480 1_G10_RGT2_10000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150556175-1924480 1_G10_RGT2_10000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_10P_A11_id_positive.mzML at line 21
index 367 is out of bounds for axis 0 with size 367
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_G22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091911617-1878584 13E03_rep_D_Alfaxalonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091911617-1878584 13E03_rep_D_Alfaxalonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample136.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_C5_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113549826-1922517 2_H4_WT_100000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113549826-1922517 2_H4_WT_100000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121847970-1879668 15A01_rep_B_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121847970-1879668 15A01_rep_B_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/NEC2_50EV_RA1_01_22486.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_366.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5F08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/267.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_127.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082759/ccms_peak/raw/MTBLS196/SysVirol_IFL001_mock_d1_291_lipid__Neg_17Sep13_13-07-01.mzXML at line 689
Premature end of data in tag peaks line 35160, line 35164, column 7660 (SysVirol_IFL001_mock_d1_291_lipid__Neg_17Sep13_13-07-01.mzXML, line 35164)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample072.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/Blank_190125070413.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_D_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_03_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170125_039EXLP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/3c/55cb67db3f5044756d61e79ea2a974/input_file/MMW4_20170125_039EXLP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000081288/raw/Ecoli_Study2/Fragmentation/NegativeMode/EcoliB2_Pooled_cT10_NEG.mzXML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_G22_id_MSn_negative.mzML at line 21
index 330 is out of bounds for axis 0 with size 330
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_H_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_H_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153145253-1868475 06H10_rep_B_Racloprideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153145253-1868475 06H10_rep_B_Racloprideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153007928-1577185 Batch3_BTFC905_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_2_Liver_HO_control_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_2_Liver_HO_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_E4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090093/raw/pBlateR37_5h3a.mzML at line 689
Opening and ending tag mismatch: binary line 18802 and binaryDataArray, line 18804, column 31 (pBlateR37_5h3a.mzML, line 18804)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091638311-1878462 13F02_rep_D_Flucloxacillin_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091638311-1878462 13F02_rep_D_Flucloxacillin_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153627177-1577489 Batch4_184A1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ansP_P4E5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (ansP_P4E5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Blank_pesticide_170404103432.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190112_ES_H3K_batch13_repA_191.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222816/20190314223839550-2227670 PAT46.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_10_C_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092129283-1878690 14B01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092129283-1878690 14B01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125349207-1862927 03A06_rep_D_Ethosuximideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125349207-1862927 03A06_rep_D_Ethosuximideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_M22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case225_pos.mzXML at line 689
attributes construct error, line 37, column 69 (Case225_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GG12_01_11737.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hybO_P3F2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (hybO_P3F2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_F_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/fadJ_#2_P5A3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024977 (fadJ_#2_P5A3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_20_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_B_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_A_B_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180417_ES_H3K_batch6_repA_98.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100829010-1869171 07G09_rep_A_Chloroquine_diphosphatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100829010-1869171 07G09_rep_A_Chloroquine_diphosphatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_F22_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180505_ES_H3K_batch4_repC_51.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223948660-1870374 01B02_rep_C_Meticraneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223948660-1870374 01B02_rep_C_Meticraneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ribD_P3B10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (ribD_P3B10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_0123_190123233112.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/028_CRa_H9M5_M470_Blank_07_low_pos.mzXML at line 689
Premature end of data in tag peaks line 15448, line 15452, column 11768 (028_CRa_H9M5_M470_Blank_07_low_pos.mzXML, line 15452)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153830235-1577592 Batch6_NCIH526_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_02_dorsal_skin_control_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 98 (Mouse_02_dorsal_skin_control_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095362/raw/MS2_VcR_3_18_1_7791.mzML at line 689
Premature end of data in tag chromatogramList line 662976, line 662977, column 1 (MS2_VcR_3_18_1_7791.mzML, line 662977)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/167-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100856520-1869193 07A06_rep_A_Cefaclor_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100856520-1869193 07A06_rep_A_Cefaclor_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_A_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080128/ccms_peak/20100520_Ctherm_SWG_PU1_T05_96hr_SCX_LTQ3_Run3/20100520_Ctherm_SWG_PU1_T05_96hr_SCX_LTQ3_Run3_05.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_C8_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153031868-1577202 Batch3_MIAPACA2_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202137611-1878243 09E05_rep_D_Mirabegronb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202137611-1878243 09E05_rep_D_Mirabegronb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112811981-1922160 4_B2_WT_0a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112811981-1922160 4_B2_WT_0a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007532_031618-1Thr3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151333877-1576369 Batch6_MDAMB231_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_74_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/QC_1_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_N18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_E7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202329693-1878332 10H01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202329693-1878332 10H01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151931104-1867908 05C04_rep_C_Desipramine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151931104-1867908 05C04_rep_C_Desipramine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201225530-1881825 16E10_rep_B_Zoledronic_acid_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201225530-1881825 16E10_rep_B_Zoledronic_acid_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_dilute_190131210552.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/CNT371_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/murA_P5D8_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (murA_P5D8_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/bioC_P3E5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (bioC_P3E5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_247.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B12_id_MSn_positive.mzML at line 21
index 765 is out of bounds for axis 0 with size 765
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121707893-1879592 15G10_rep_A_Imiquimoda.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121707893-1879592 15G10_rep_A_Imiquimoda.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092903283-1879045 14A09_rep_C_Piperacetazineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092903283-1879045 14A09_rep_C_Piperacetazineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150939142-1924672 2_G7_RGT2_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150939142-1924672 2_G7_RGT2_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ2_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152752991-1868298 06C04_rep_A_Carisoprodola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152752991-1868298 06C04_rep_A_Carisoprodola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_B9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_A5_160424181145.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_blank_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_H13_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pabA_P3G1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (pabA_P3G1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/BTMB1H12.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_1_40x_2022_1006_Michael_pos-0.0019.mzML at line 689
Premature end of data in tag binary line 5593, line 5593, column 165576 (1_1_40x_2022_1006_Michael_pos-0.0019.mzML, line 5593)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_G_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080030/ccms_peak/Forensic_study_80_volunteers/Forensic_Hands_mzXML/.DS_Store at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/136-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_E7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114250053-1922887 4_B8_STE2_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114250053-1922887 4_B8_STE2_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_I12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P8A04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152130528-1576760 Batch1_MDAMB436_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1200.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1200.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150204095-1864692 02C08_rep_B_Pioglitazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150204095-1864692 02C08_rep_B_Pioglitazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092453650-1878850 14F03_rep_B_Ranolazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092453650-1878850 14F03_rep_B_Ranolazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007610_032118-Unst1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20180427_ES_batch3B_pWT_a.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/2_5_male_2022_1017_Michael_neg-0.0023.mzML at line 689
Premature end of data in tag binary line 21517, line 21517, column 1525196 (2_5_male_2022_1017_Michael_neg-0.0023.mzML, line 21517)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113724607-1922599 3_H3_WT_100000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113724607-1922599 3_H3_WT_100000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_I3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_00.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_STD2_00.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/dacC_P3A12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024904 (dacC_P3A12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_blank_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_22.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_22.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_G_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer1_RBC_0h_NEG.mzXML at line 689
attributes construct error, line 41, column 97 (Volunteer1_RBC_0h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200554607-1881536 16F11_rep_A_Ritonavirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200554607-1881536 16F11_rep_A_Ritonavirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101858821-1869675 07G01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101858821-1869675 07G01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/METABOLOMICS_NEGATIVE_4JUNE_23/Ref_5_B_rep_4_B-E1_1_5859.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_G4_id_MSn_negative.mzML at line 21
index 291 is out of bounds for axis 0 with size 291
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P2F12_160528162312.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_E18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200836069-1881655 16B10_rep_A_Felbamatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200836069-1881655 16B10_rep_A_Felbamatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5004_C11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 2-32.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_C19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153143951-1868474 06H10_rep_B_Raclopridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153143951-1868474 06H10_rep_B_Raclopridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091729153-1878502 13H04_rep_D_Nomegestrol_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091729153-1878502 13H04_rep_D_Nomegestrol_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_C8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125600866-1863034 03D04_rep_D_Oxolinic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125600866-1863034 03D04_rep_D_Oxolinic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122619816-1867506 05A10_rep_A_Tacrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122619816-1867506 05A10_rep_A_Tacrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114141867-1874853 11B07_rep_D_Suprofenb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114141867-1874853 11B07_rep_D_Suprofenb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112432152-1921967 3_F7_GPR1_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112432152-1921967 3_F7_GPR1_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087101/ccms_peak/20210228_PWS_EC-PMB-CLB-META_3152_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152737895-1577058 Batch1_NCIH1299_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S134.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S134.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_125b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Quer_17121406_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_F_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113341872-1874505 11C01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113341872-1874505 11C01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/WTHA07.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_B9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5000_H22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_02P_E7_id_positive.mzML at line 21
index 347 is out of bounds for axis 0 with size 347
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150915977-1924652 2_E10_RGT2_100_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150915977-1924652 2_E10_RGT2_100_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124823553-1862666 03A02_rep_B_Isoniazida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124823553-1862666 03A02_rep_B_Isoniazida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_F5_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_D_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153035202-1868421 06B03_rep_B_Amifostineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153035202-1868421 06B03_rep_B_Amifostineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_H10_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated24hC3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated24hC3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907151003746-1865062 02E10_rep_D_Pirenzepine dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907151003746-1865062 02E10_rep_D_Pirenzepine dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EB1K018.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc032_pos.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc032_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101152671-1869333 07A06_rep_B_Cefaclor_hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101152671-1869333 07A06_rep_B_Cefaclor_hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_BUME_37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample212_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_19032901_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121630492-1867035 04G06_rep_B_Bupivacaine_hydrochloride_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121630492-1867035 04G06_rep_B_Bupivacaine_hydrochloride_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_18_C_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111637628-1871584 10A09_rep_B_Sulfadimethoxineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111637628-1871584 10A09_rep_B_Sulfadimethoxineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125859845-1863182 04E06_rep_A_Chenodiola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125859845-1863182 04E06_rep_A_Chenodiola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group2/group2_P1_H3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5006_A1_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/malP_P6B1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (malP_P6B1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114241838-1874902 12A07_rep_A_Clioquinola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114241838-1874902 12A07_rep_A_Clioquinola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223841311-1870322 01G08_rep_C_Miconazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223841311-1870322 01G08_rep_C_Miconazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153005529-1577183 Batch3_MGHU3_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087795/ccms_peak/Phosphomutants_metabolome/ES_phmut_116a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_C14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_SERUM_V2_CAT.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080558/ccms_peak/400 mice RR/SS396_RB12_01_7831.mzXML at line 689
Premature end of data in tag index line 25299, line 31186, column 1 (SS396_RB12_01_7831.mzXML, line 31186)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222759421-1869834 01A11_rep_A_Sulfaguanidineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222759421-1869834 01A11_rep_A_Sulfaguanidineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cusB_#3_P4G2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024964 (cusB_#3_P4G2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/006_1022_1_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_N8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114315254-1874929 12A06_rep_A_Dolasetron_mesilateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114315254-1874929 12A06_rep_A_Dolasetron_mesilateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col1_JX_04122015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092324359-1878781 14C02_rep_A_Phensuximideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092324359-1878781 14C02_rep_A_Phensuximideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person13_blood_youth_POS.mzXML at line 689
attributes construct error, line 41, column 100 (Person13_blood_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/LYG010C.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_17.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control26_pos.mzXML at line 689
attributes construct error, line 37, column 71 (Control26_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_G8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_E12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150042812-1864148 02H05_rep_B_Josamycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150042812-1864148 02H05_rep_B_Josamycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123007506-1875890 08B03_rep_A_Mometasone_furoatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123007506-1875890 08B03_rep_A_Mometasone_furoatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111448974-1871501 10F07_rep_B_Guaifenesina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111448974-1871501 10F07_rep_B_Guaifenesina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_118.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_A15_id_MSn_negative.mzML at line 21
index 262 is out of bounds for axis 0 with size 262
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_12_leg_muscle_RESV_skin_NEG.mzXML at line 689
attributes construct error, line 38, column 94 (Mouse_12_leg_muscle_RESV_skin_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/002_1010_3_Col1_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_F_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_K5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/015_27.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201502327-1877944 09B04_rep_C_Mepenzolate_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201502327-1877944 09B04_rep_C_Mepenzolate_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD3_00.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223358812-1870105 01E11_rep_B_Lidocaine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223358812-1870105 01E11_rep_B_Lidocaine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_A3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_E_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/OS2AA09.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082761/ccms_peak/MTBLS210/raw/MTBLS210/L_A_7.mzXML at line 689
Premature end of data in tag peaks line 2590, line 2594, column 19945 (L_A_7.mzXML, line 2594)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150416930-1864793 02G03_rep_C_Dipyridamoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150416930-1864793 02G03_rep_C_Dipyridamoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100316198-1868921 06D11_rep_D_Epiandrosteronea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100316198-1868921 06D11_rep_D_Epiandrosteronea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087808/raw/RIGHT_SSL_EI_sleep_STER_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2013_3023.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2013_3023.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/LEA2_20EV_RA2_01_22554.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_K21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_16.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_blank_16.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (20).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111817759-1872048 10B06_rep_C_Flecainide_acetatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111817759-1872048 10B06_rep_C_Flecainide_acetatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152606021-1868215 05E10_rep_D_Meloxicamb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152606021-1868215 05E10_rep_D_Meloxicamb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_47_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222856301-1869877 01B05_rep_A_Sulfacetamide sodic hydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222856301-1869877 01B05_rep_A_Sulfacetamide sodic hydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_H_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122850761-1875830 08D05_rep_A_Diclofenac_sodiuma.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122850761-1875830 08D05_rep_A_Diclofenac_sodiuma.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092811046-1879003 14A10_rep_B_Oxyphenbutazoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092811046-1879003 14A10_rep_B_Oxyphenbutazoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101141289-1869324 07F03_rep_B_Grepafloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101141289-1869324 07F03_rep_B_Grepafloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091742035-1878512 13A09_rep_D_Decamethonium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091742035-1878512 13A09_rep_D_Decamethonium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_1_P_rep_1_B-D3_1_5536.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121801873-1867107 04F01_rep_C_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121801873-1867107 04F01_rep_C_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_13_B_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125850184-1863174 04D03_rep_A_Indomethacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125850184-1863174 04D03_rep_A_Indomethacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D2_preFOS_3_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202148994-1878252 09E06_rep_D_Ibutilide_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202148994-1878252 09E06_rep_D_Ibutilide_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V6_EDTAk3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_H_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113042240-1922250 1_B2_WT_0.1_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113042240-1922250 1_B2_WT_0.1_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_01_TomQC.mzXML at line 689
attributes construct error, line 38, column 73 (neg_20100924_01_TomQC.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124915377-1862707 03B05_rep_B_Alverine_citrate_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124915377-1862707 03B05_rep_B_Alverine_citrate_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yecC_P4B9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (yecC_P4B9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151809064-1576597 Batch7_UMC11_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/78.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P3A02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121929790-1879699 15C02_rep_B_Famciclovirb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121929790-1879699 15C02_rep_B_Famciclovirb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123341789-1876062 08E08_rep_B_Eburnamonine_(-)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123341789-1876062 08E08_rep_B_Eburnamonine_(-)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_M20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_I20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_P20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210308_AD_96.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pBlateR231_5h1a.mzML at line 88
Invalid base64-encoded string: number of data characters (1517) cannot be 1 more than a multiple of 4
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151359243-1576390 Batch7_KM12_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113612713-1922537 2_B10_IZH2_0b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113612713-1922537 2_B10_IZH2_0b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113043419-1874364 11D02_rep_B_Butacainea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113043419-1874364 11D02_rep_B_Butacainea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101627036-1869551 07C02_rep_C_Vigabatrin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101627036-1869551 07C02_rep_C_Vigabatrin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_27_C_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_61.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BM5A020.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD5_02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_31_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_I3_id_MSn_positive.mzML at line 21
index 357 is out of bounds for axis 0 with size 357
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_41_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152023366-1576707 Batch1_BT549_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/10112021_Batch13_QC_50.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/376.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152119178-1576751 Batch1_MDAMB231_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-045_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111520210-1921105 1_G1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111520210-1921105 1_G1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ydiO_P5E1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (ydiO_P5E1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092919988-1879058 14H05_rep_C_Saquinavir_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092919988-1879058 14H05_rep_C_Saquinavir_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_STD6_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151214362-1924806 3_H7_SNF3_10000_nM_CA_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151214362-1924806 3_H7_SNF3_10000_nM_CA_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample192.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_B7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_18.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_QC_18.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150348105-1864771 02G05_rep_C_Loperamide hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150348105-1864771 02G05_rep_C_Loperamide hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122426196-1867414 04H04_rep_D_Trifluoperazine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122426196-1867414 04H04_rep_D_Trifluoperazine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-093_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_A4_id_MSn_negative.mzML at line 21
index 184 is out of bounds for axis 0 with size 184
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20121114_83.mzXML at line 689
Premature end of data in tag peaks line 25743, line 25747, column 3653 (20121114_83.mzXML, line 25747)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153154932-1577267 Batch5_NCIH23_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101017176-1869257 07D07_rep_B_Lovastatina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101017176-1869257 07D07_rep_B_Lovastatina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Table1_Sciex-QTRAP-6500-RapidScreen_intraday-precision/RapidScreen_Intraday_Precision-ehigh14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1375.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1375.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082791/ccms_peak/raw/MTBLS38/L-alanyl-L-alanine.mzXML at line 689
Premature end of data in tag peaks line 5607, line 5611, column 85484 (L-alanyl-L-alanine.mzXML, line 5611)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151859126-1576639 Batch7_NCIH1993_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007574_031718-5CRP4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_blank_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_blank_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_14P_G4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125634618-1877100 12B09_rep_D_Dioxybenzoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125634618-1877100 12B09_rep_D_Dioxybenzoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089627/ccms_peak/Bacillus_mzML/pBsubR231_5h2b.mzML at line 689
Opening and ending tag mismatch: binary line 175300 and spectrum, line 175335, column 20 (pBsubR231_5h2b.mzML, line 175335)
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_17_Blood_CMC_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 88 (Mouse_17_Blood_CMC_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/28102021_Batch12_QC_70.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201632533-1882008 16E04_rep_C_Clopidogrelb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201632533-1882008 16E04_rep_C_Clopidogrelb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_F_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_11P_A2_id_positive.mzML at line 21
index 283 is out of bounds for axis 0 with size 283
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/mhpB_P4D7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (mhpB_P4D7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/451.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_M14_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample185.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190113_ES_H3K_batch13_repB_198.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124812458-1862657 03A01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124812458-1862657 03A01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152739131-1577059 Batch1_NCIH1299_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_D1_id_negative.mzML at line 21
index 272 is out of bounds for axis 0 with size 272
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151313626-1576352 Batch7_SNB75_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case30_pos.mzXML at line 689
attributes construct error, line 37, column 68 (Case30_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H6_id_MSn_negative.mzML at line 21
index 299 is out of bounds for axis 0 with size 299
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_09_blood_control_skin_POS.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_09_blood_control_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124611065-1862560 03H06_rep_B_Carmofura.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124611065-1862560 03H06_rep_B_Carmofura.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_E_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Wogo_18091336_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample13n.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145849395-1864059 02D01_rep_A_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145849395-1864059 02D01_rep_A_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151544710-1576477 Batch7_UACC62_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_39_H_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_1_Blood_HO_control_POS.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_1_Blood_HO_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Pseudoalteromonas_ruthenica_S2756_02.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_A10_id_MSn_positive.mzML at line 21
index 531 is out of bounds for axis 0 with size 531
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007647_032118-Blank ext.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_L7_id_MSn_negative.mzML at line 21
index 318 is out of bounds for axis 0 with size 318
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc3 (3).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085887/ccms_peak/raw/HFS_vehicle_T0_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113520812-1874547 11C10_rep_C_Dimethadioneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113520812-1874547 11C10_rep_C_Dimethadioneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151924554-1867903 05G09_rep_C_Dequalinium_dichlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151924554-1867903 05G09_rep_C_Dequalinium_dichlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123055560-1875928 08H03_rep_A_Dipivefrin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123055560-1875928 08H03_rep_A_Dipivefrin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yfdE_P4C9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024970 (yfdE_P4C9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_E11_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_A4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130137996-1877331 13D03_rep_B_Pizotifen_malatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130137996-1877331 13D03_rep_B_Pizotifen_malatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15JAN2021 Batch01_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GE1_01_11976.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122948000-1867673 05G06_rep_B_Mitoxantrone_dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122948000-1867673 05G06_rep_B_Mitoxantrone_dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5H07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_H_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M9_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Controlcc049_pos.mzXML at line 689
attributes construct error, line 37, column 74 (Controlcc049_pos.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223506981-1870157 01C05_rep_B_Norethynodrela.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223506981-1870157 01C05_rep_B_Norethynodrela.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_D_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_A4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153146504-1868476 06D07_rep_B_Digitoxigenina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153146504-1868476 06D07_rep_B_Digitoxigenina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145808051-1864026 02B11_rep_A_Nocodazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145808051-1864026 02B11_rep_A_Nocodazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_WIAJ01.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_E9_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/araH_P4H7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (araH_P4H7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_34_E_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K4_id_MSn_negative.mzML at line 21
index 328 is out of bounds for axis 0 with size 328
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/PureMixture/Pesticide_Mix12345_C2_repl1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111423312-1871481 10E10_rep_B_Sulfametera.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111423312-1871481 10E10_rep_B_Sulfametera.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/268.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_40_C_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223157245-1870013 01H10_rep_B_Diphemanil methylsulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223157245-1870013 01H10_rep_B_Diphemanil methylsulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S08_0126_190128185332.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/419.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_N20_id_MSn_negative.mzML at line 21
index 347 is out of bounds for axis 0 with size 347
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P2_D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080951/ccms_peak/peaks/Person30_blood_elder_POS.mzXML at line 689
attributes construct error, line 41, column 83 (Person30_blood_elder_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125156198-1876887 12E11_rep_C_Protriptyline_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125156198-1876887 12E11_rep_C_Protriptyline_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152426029-1576899 Batch2_NCIH596_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908123137749-1867756 05B09_rep_B_N6-methyladenosinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908123137749-1867756 05B09_rep_B_N6-methyladenosinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_49_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101950574-1869717 07C03_rep_D_Biperiden_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101950574-1869717 07C03_rep_D_Biperiden_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_C1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_blank_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/appA_#2_P5F10_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024974 (appA_#2_P5F10_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_C12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/091_83.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate8/Plate8_V4_GC1_01_17162.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_13P_C4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_QC_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0026_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0026_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.ros_R5_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_03_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125501500-1862986 03B11_rep_D_Flutamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125501500-1862986 03B11_rep_D_Flutamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_D5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_A_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125305283-1876940 12E09_rep_D_Nilutamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125305283-1876940 12E09_rep_D_Nilutamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_sample02.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/002_20nMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150417124705.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202428115-1878378 10C05_rep_A_Flunixin_megluminea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202428115-1878378 10C05_rep_A_Flunixin_megluminea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124451396-1876600 09E06_rep_A_Ibutilide_fumaratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124451396-1876600 09E06_rep_A_Ibutilide_fumaratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101314641-1869399 07H01_rep_B_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101314641-1869399 07H01_rep_B_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_G7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_P11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210330_AD_20.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230201_pluskal_mce_1D3_K16_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_L18_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_H12_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152722275-1868274 06A04_rep_A_Thyroxine_(L)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152722275-1868274 06A04_rep_A_Thyroxine_(L)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12092021_Batch08_QC_28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100924_21_RIN_51.mzXML at line 689
attributes construct error, line 38, column 74 (neg_20100924_21_RIN_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_STD6_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_197.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130312276-1877404 13G05_rep_B_Nifurtimoxb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130312276-1877404 13G05_rep_B_Nifurtimoxb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095665/peak/Peak_List_Files/50130_microPOTS_Rat_Brain_ROI1b_3_25_1_894.mzML at line 689
Premature end of data in tag binary line 4805929, line 4805929, column 512161 (50130_microPOTS_Rat_Brain_ROI1b_3_25_1_894.mzML, line 4805929)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/EBM009.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150644253-1864907 02A01_rep_C_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150644253-1864907 02A01_rep_C_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122054169-1867243 04B04_rep_C_Norethindroneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122054169-1867243 04B04_rep_C_Norethindroneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153227735-1577293 Batch4_CAKI1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD5_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_E2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_21_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122108028-1867254 04E10_rep_C_Pyrilamine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122108028-1867254 04E10_rep_C_Pyrilamine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201332376-1877878 09F05_rep_C_Sulfamerazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201332376-1877878 09F05_rep_C_Sulfamerazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Daid_15102011_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/PureMixture/Pesticide_Mix678910_C2_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_A_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_A_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114858888-1875199 12A09_rep_B_Promethazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114858888-1875199 12A09_rep_B_Promethazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_43_G_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hD1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hD1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153729650-1577541 Batch4_NCIH1048_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yidA_P3F9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024983 (yidA_P3F9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111747824-1871639 10D05_rep_C_Fenoprofen_calcium_salt_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111747824-1871639 10D05_rep_C_Fenoprofen_calcium_salt_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-15.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080606/ccms_peak/11.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_E_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/PED2_20EV_RA7_01_22529.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603154002763-1577670 Batch6_MCF7_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_20.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_QC_20.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151445717-1576429 Batch6_MOLT4_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150841925-1924623 2_D10_RGT2_10_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150841925-1924623 2_D10_RGT2_10_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_12_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210112_AD_28.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_G_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/putA_P4A6_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024909 (putA_P4A6_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_M3_id_MSn_positive.mzML at line 21
index 420 is out of bounds for axis 0 with size 420
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_C_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093050581-1879125 14H03_rep_C_Procarbazine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093050581-1879125 14H03_rep_C_Procarbazine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate7/Plate7_V4_GH3_01_17113.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/MS2G01Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223707026-1870249 01G03_rep_C_Homatropine hydrobromide (R,S)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223707026-1870249 01G03_rep_C_Homatropine hydrobromide (R,S)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230408 - 1-34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lplT_P4B1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (lplT_P4B1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/23092021_Batch09_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_H_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_24_H_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GG7_01_11552.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_N4_id_MSn_positive.mzML at line 21
index 530 is out of bounds for axis 0 with size 530
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_E_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202221584-1878278 10A10_rep_A_Sulfanilamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202221584-1878278 10A10_rep_A_Sulfanilamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/001_Nitrate_Day0_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample048.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P5B09.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Batch14_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_K15_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_19_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007513_031618-0.01Thr3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_E8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152431035-1576903 Batch2_NCIH2170_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer3_blood_4h_POS.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer3_blood_4h_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/002_1010_2_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_B_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_B_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_151.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_151.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125209085-1862846 03F06_rep_C_Mefexamide_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125209085-1862846 03F06_rep_C_Mefexamide_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_50_F_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201353093-1881891 16E07_rep_B_Enalaprilat_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201353093-1881891 16E07_rep_B_Enalaprilat_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201005586-1881721 16H11_rep_B_Cefprozila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201005586-1881721 16H11_rep_B_Cefprozila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150453235-1924426 1_D4_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150453235-1924426 1_D4_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111536149-1871537 10A08_rep_B_Liranaftatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111536149-1871537 10A08_rep_B_Liranaftatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_72_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_C21_id_MSn_negative.mzML at line 21
index 304 is out of bounds for axis 0 with size 304
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122557711-1867488 05H07_rep_A_Etoposidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122557711-1867488 05H07_rep_A_Etoposidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222815/20190314165759925-2227509 PAT44.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150552703-1924477 1_G11_RGT2_10000_nM_estra_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150552703-1924477 1_G11_RGT2_10000_nM_estra_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ7_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sdhB_P3F1_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024911 (sdhB_P3F1_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_H10_id_MSn_positive.mzML at line 21
index 569 is out of bounds for axis 0 with size 569
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101549118-1869520 07H03_rep_C_Selegiline_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101549118-1869520 07H03_rep_C_Selegiline_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GB11_01_16800.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_238.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD3_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_38_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_A_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201908678-1878127 09G07_rep_D_Chlorcyclizine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201908678-1878127 09G07_rep_D_Chlorcyclizine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092960/raw/HILIC_plusDDA/HILIC/20221111-JC-471_HILIC_217_01.mzML at line 689
Invalid character: Char 0x0 out of allowed range
, line 20788, column 59776 (20221111-JC-471_HILIC_217_01.mzML, line 20788)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12032021_Batch05_QC_26.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_13_G_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121725301-1879605 15E07_rep_B_Sparfloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121725301-1879605 15E07_rep_B_Sparfloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_07_leg_skin_control_skin_POS.mzXML at line 689
attributes construct error, line 38, column 95 (Mouse_07_leg_skin_control_skin_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/14JAN2021 LTR_FreezeThaw3_003.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlD1b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlD1b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET52.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/DataSET52.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153741524-1577551 Batch6_NCIH82_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample197_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case12_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case12_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_26_B_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/neg_20100923_43_AC+_49.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087731/ccms_peak/RIGHT_SSL_EI_sleep_4_min_40_15dg_min_210_5dg_min_280_as_Center_1mkl_split10/04_05_2012_1219.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1219.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_126.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_126.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Fracking_Fluid_MetFish/002_1010_2_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_C_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603153757330-1577564 Batch7_MDAMB231_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000093951/raw/HAH19.mzXML at line 375
int() argument must be a string, a bytes-like object or a real number, not 'NoneType'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150748514-1924577 2_H3_WT_100000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150748514-1924577 2_H3_WT_100000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GA8_01_16909.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_D_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW3_20170207_028EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/ba/8f715573a78dd45cdfadf1cb5156d1/input_file/MMW3_20170207_028EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122904332-1867638 05B09_rep_A_N6-methyladenosinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122904332-1867638 05B09_rep_A_N6-methyladenosinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_08.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_08.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_STD2_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124055320-1876408 08A01_rep_D_DMSOa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124055320-1876408 08A01_rep_D_DMSOa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD6_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151806681-1576595 Batch3_PANC1_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080950/ccms_peak/peaks/Volunteer4_blood_0h_NEG.mzXML at line 689
attributes construct error, line 41, column 98 (Volunteer4_blood_0h_NEG.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151542282-1576475 Batch7_SN12C_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1D11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_E_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15JAN2021 Batch01_QC_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_STD5_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_F_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_PLASMA_baseline_sample03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153221975-1868504 06C05_rep_B_Cephalosporanic_acid,_7-aminoa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153221975-1868504 06C05_rep_B_Cephalosporanic_acid,_7-aminoa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix12345/Swabs/Pesticide_Mix12345_swabs_C7_repl3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0009_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ2_2 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151427962-1576414 Batch6_CORL279_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223626283-1870218 01D07_rep_C_Troleandomycinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223626283-1870218 01D07_rep_C_Troleandomycinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_B_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_N11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_94.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082766/ccms_peak/raw/MTBLS295/mtab_tsq_cara_020615_94.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121532187-1879518 15F06_rep_A_Losartana.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121532187-1879518 15F06_rep_A_Losartana.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/MISC/P2_wrong/P2D10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GF4_01_16849.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-LLOQ6_3 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_43_AC+_49.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_G3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20210119_LKM_yeast_MeOH_control_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_01_F5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/1024.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123620624-1876190 08F07_rep_C_Demecarium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123620624-1876190 08F07_rep_C_Demecarium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223354821-1870102 01A02_rep_B_Azaguanine-8b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223354821-1870102 01A02_rep_B_Azaguanine-8b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_A21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130005564-1877263 13C09_rep_A_Norgestimatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130005564-1877263 13C09_rep_A_Norgestimatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150513301-1864837 02F02_rep_C_Glipizideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150513301-1864837 02F02_rep_C_Glipizideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121517470-1866978 04F05_rep_B_Pimethixene_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121517470-1866978 04F05_rep_B_Pimethixene_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152300082-1576831 Batch2_NCIH358_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_15P_G9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_G9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_P3_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150426019-1864800 02G04_rep_C_Chlorhexidinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150426019-1864800 02G04_rep_C_Chlorhexidinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_G_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_13P_C9_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_O5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081454/ccms_peak/1704_Linear_calibration/RAW/Mix678910/Swabs/Pesticide_Mix678910_swabs_C10_repl2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_E21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_E12_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113342903-1922407 2_G5_WT_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113342903-1922407 2_G5_WT_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/tauB_P3D4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (tauB_P3D4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraTreated24hB3a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraTreated24hB3a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202418061-1878370 10B04_rep_A_Metoprolol-(+,-)_(+)-tartrate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202418061-1878370 10B04_rep_A_Metoprolol-(+,-)_(+)-tartrate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150545675-1924471 1_C7_RGT2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150545675-1924471 1_C7_RGT2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_F12_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_J5_id.mzML at line 21
index 576 is out of bounds for axis 0 with size 576
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200538623-1881524 16G03_rep_A_Loteprednol_etabonateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200538623-1881524 16G03_rep_A_Loteprednol_etabonateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087795/raw/Phosphomutants_metabolome/ES_phmut_127a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125830111-1877189 13B07_rep_A_Tracazolate_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125830111-1877189 13B07_rep_A_Tracazolate_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_G11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/23092021_Batch09_QC_34.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_F_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_37_F_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/808.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_C8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125715134-1877131 13B06_rep_A_Naftopidil_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125715134-1877131 13B06_rep_A_Naftopidil_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092259/peak/Sample0012.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/218.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_A19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603154001557-1577669 Batch6_SF539_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_07_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151157741-1576289 Batch5_NCIH446_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114309216-1874924 12F11_rep_A_Allopurinola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114309216-1874924 12F11_rep_A_Allopurinola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P1H06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_L16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114727587-1875126 12F02_rep_B_Propofola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114727587-1875126 12F02_rep_B_Propofola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200704549-1881588 16A08_rep_A_Amorolfine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200704549-1881588 16A08_rep_A_Amorolfine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101644091-1869565 07F07_rep_C_(S)-(-)-Atenolola.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101644091-1869565 07F07_rep_C_(S)-(-)-Atenolola.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Validation_Experiment_MetFish/014_200uMAAcali_30ugmLIS_SRM_Col2_JX_04152015_150418072705.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130812361-1877641 13F08_rep_C_Etilefrine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130812361-1877641 13F08_rep_C_Etilefrine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112817295-1874255 11E09_rep_A_Iodixanolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112817295-1874255 11E09_rep_A_Iodixanolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_49_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/ExtraTreated12hB1a.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (ExtraTreated12hB1a.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_C8_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW6_20170207_013EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/35/7f878c46dd57b2964ea0401c473df9/input_file/MMW6_20170207_013EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009580_IBD200_E14_B10.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095192/peak/20210120_AD_53.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113542800-1922511 2_C1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113542800-1922511 2_C1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_239.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_36_D_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample055_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224248632-1870513 01D05_rep_D_Triamterenea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224248632-1870513 01D05_rep_D_Triamterenea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079922/ccms_peak/D1_postFOS_3_Pos.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_14_Liver_CMC_control_NEG.mzXML at line 689
attributes construct error, line 38, column 91 (Mouse_14_Liver_CMC_control_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122105150-1879772 15D09_rep_B_Granisetrona.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122105150-1879772 15D09_rep_B_Granisetrona.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_H_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_A19_id_MSn_positive.mzML at line 21
index 617 is out of bounds for axis 0 with size 617
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153153014-1868481 06E04_rep_B_Gabazine_bromideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153153014-1868481 06E04_rep_B_Gabazine_bromideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group3/group3_P1_B4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_P12_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_01P_C4_id_positive.mzML at line 21
index 320 is out of bounds for axis 0 with size 320
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_G1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121132439-1879340 14D11_rep_D_Methiazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121132439-1879340 14D11_rep_D_Methiazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L0 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111457971-1871508 10A01_rep_B_DMSOb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111457971-1871508 10A01_rep_B_DMSOb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_G6_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/gudD_#1_P3D1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024979 (gudD_#1_P3D1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_STD6_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S108.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S108.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150706267-1864924 02H03_rep_C_Chloroxinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150706267-1864924 02H03_rep_C_Chloroxinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_QC_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_G12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112021517-1921749 2_A1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112021517-1921749 2_A1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087807/ccms_peak/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1371.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1371.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/pta_P3C2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024910 (pta_P3C2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/678.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152341672-1576864 Batch1_HCC70_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_D22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153810222-1577575 Batch7_MCF7_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_03_blood_control_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 92 (Mouse_03_blood_control_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/metA_#1_P4D11_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (metA_#1_P4D11_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_H3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_06_H3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/Hono_18091336_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/araE_P3A4_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (araE_P3A4_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911125438672-1877011 12C10_rep_D_Nabumetonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911125438672-1877011 12C10_rep_D_Nabumetonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_N3_id_negative.mzML at line 21
index 263 is out of bounds for axis 0 with size 263
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223804027-1870293 01A06_rep_C_Atracurium besylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223804027-1870293 01A06_rep_C_Atracurium besylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00083172.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1C2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/1C2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03-2_B_H_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/308.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30256 - GI-19-081.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082658/ccms_peak/AmyPlate1.mzML at line 817
No scans found in file /data/datasets/server/MassIVE/MSV000082658/ccms_peak/AmyPlate1.mzML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114140819-1922825 4_B1_WT_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114140819-1922825 4_B1_WT_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L20_id_MSn_negative.mzML at line 21
index 319 is out of bounds for axis 0 with size 319
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A10_id.mzML at line 21
index 584 is out of bounds for axis 0 with size 584
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_B9_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_K3_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D7_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_35_B_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_O20_id_MSn_negative.mzML at line 21
index 321 is out of bounds for axis 0 with size 321
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_13_Liver_CMC_control_POS.mzXML at line 689
attributes construct error, line 38, column 91 (Mouse_13_Liver_CMC_control_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912093139760-1879164 14A03_rep_C_Tridihexethyl_chloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912093139760-1879164 14A03_rep_C_Tridihexethyl_chloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/12032021_Batch05_QC_22.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_I21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_240.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112447342-1921980 3_G1_WT_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112447342-1921980 3_G1_WT_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_A_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/UCC_Oscar_MetFish/004_Nitrate_Day17_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_H7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_I14_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-108_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000088017/ccms_peak/12306-gsnor3-15_Treffon-002.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_09P_G8_id_positive.mzML at line 21
index 379 is out of bounds for axis 0 with size 379
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911113933991-1874750 11B05_rep_D_Cefsulodin_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911113933991-1874750 11B05_rep_D_Cefsulodin_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_E_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_STD1_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_O17_id_MSn_positive.mzML at line 21
index 391 is out of bounds for axis 0 with size 391
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230130_pluskal_mce_1D1_A3_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_25_D_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_94.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_tsq_94.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_03P_A11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_P17_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_E17_id_MSn_negative.mzML at line 21
index 355 is out of bounds for axis 0 with size 355
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_E15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/aqpZ_P3C12_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (aqpZ_P3C12_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_72_A_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090841/raw/2022_Woodbiotransformation_screening(Phytochemical x Fungi)/mzml/DMSO_19040307_neg_Cent.mzML at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111450349-1871502 10F07_rep_B_Guaifenesinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111450349-1871502 10F07_rep_B_Guaifenesinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_09_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100924295-1869215 07B06_rep_A_Terconazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100924295-1869215 07B06_rep_A_Terconazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-qc_elow.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151633556-1576518 Batch7_MIAPACA2_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224056018-1870425 01G05_rep_D_Chlorpromazine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224056018-1870425 01G05_rep_D_Chlorpromazine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092627/peak/Peak_List_Files/ALZ_CBM_05_425_prot_36_IMS_15Jan18_Fir_17-10-21.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ghxQ_#1_P5G10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024973 (ghxQ_#1_P5G10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_30_C_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123443306-1876112 08D08_rep_B_Temozolomidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123443306-1876112 08D08_rep_B_Temozolomidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_M5_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000081039/ccms_peak/raw/MTBLS293/mtab_R1_Dyhram_2014_1017_25.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_45_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/549-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_11_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121603713-1867014 04H04_rep_B_Trifluoperazine_dihydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121603713-1867014 04H04_rep_B_Trifluoperazine_dihydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080030/ccms_peak/Forensic_study_80_volunteers/Forensic_Hands_mzXML/Forensic_Hands_plate_4_mzXML/.DS_Store at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_K20_id_negative.mzML at line 21
index 266 is out of bounds for axis 0 with size 266
Error processing file: /data/datasets/server/MassIVE/MSV000088835/ccms_peak/liver_phospho_LFD39_1_A.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00072583.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/ilvC_P3H5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (ilvC_P3H5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_156.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151939848-1867915 05D11_rep_C_Droperidolb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151939848-1867915 05D11_rep_C_Droperidolb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_M22_id_negative.mzML at line 21
index 253 is out of bounds for axis 0 with size 253
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_09P_A4_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_39_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_37_G_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/819.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_5.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_F_5.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153334494-1868561 06F04_rep_B_Calcipotrieneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153334494-1868561 06F04_rep_B_Calcipotrieneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_F19_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145729896-1863995 02G03_rep_A_Dipyridamolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145729896-1863995 02G03_rep_A_Dipyridamolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_H_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_48_H_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201443304-1881929 16B05_rep_C_Tegaserod_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201443304-1881929 16B05_rep_C_Tegaserod_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_A8_id_MSn_negative_20240503180816.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_E21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample200.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14JAN2021 LTR_FreezeThaw5_005.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_22_F_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/BTMB8H06.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5005_O10_id_MSn_negative.mzML at line 21
index 345 is out of bounds for axis 0 with size 345
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/OVA2_MS_RA2_01_22488.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000091099/peak/pos_20/DN-164_positive_20eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_O13_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P2_D9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD1_04.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_L11_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_P18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/404.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_H_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_27_H_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_10_A_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_D4_id_MSn_negative.mzML at line 21
index 357 is out of bounds for axis 0 with size 357
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/12092021_Batch08_QC_30.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080389/peak/Peak_List_Files/mLm_CC_Tmem111_E18-5_AT2_Mut_4_P_15Sep16_Arwen_16-08-17.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_positive/20240408_pluskal_fda_drugs_5005_E16_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222943700-1869913 01E05_rep_A_Isoxicama.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222943700-1869913 01E05_rep_A_Isoxicama.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123946724-1876354 08E08_rep_D_Eburnamonine_(-)a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123946724-1876354 08E08_rep_D_Eburnamonine_(-)a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/peak/Peak_List_Files/Fracking_Fluid_MetFish/001_FC_2_Col2_JX_03262016.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/MMW4_20170127_062ENLN.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/8b/62dff294620f66a8d54b99ff5b5eae/input_file/MMW4_20170127_062ENLN.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000097448/ccms_peak/001__20221003__GC1410F__50%MeOH__dil.mzML at line 689
Premature end of data in tag binary line 11779, line 11779, column 1056103 (001__20221003__GC1410F__50%MeOH__dil.mzML, line 11779)
Error processing file: /data/datasets/server/MassIVE/MSV000084888/ccms_peak/L-5-2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_I18_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample203.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_01P_A12_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125916393-1863196 04G06_rep_A_Bupivacaine_hydrochloride_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125916393-1863196 04G06_rep_A_Bupivacaine_hydrochloride_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_C_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_H_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121200646-1879361 14D03_rep_D_Lansoprazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121200646-1879361 14D03_rep_D_Lansoprazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150631281-1864897 02G09_rep_C_Canrenoic acid potassium saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150631281-1864897 02G09_rep_C_Canrenoic acid potassium saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yeaV_P3A2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (yeaV_P3A2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Case46_neg.mzXML at line 689
attributes construct error, line 37, column 68 (Case46_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000097681/peak/amino acids/030521-b1-RN-3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_QC_03.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_P3_id_negative.mzML at line 21
index 252 is out of bounds for axis 0 with size 252
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909223154620-1870011 01B11_rep_B_Minoxidila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909223154620-1870011 01B11_rep_B_Minoxidila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_03_F6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000091100/peak/pos_40/DN-048_positive_40eV+.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_B_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_38_B_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_E_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_E_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_blank_23.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/03_16_E_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/paaK_P3E5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (paaK_P3E5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_44_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6H10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122834755-1880118 15F08_rep_D_Vecuronium_bromidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122834755-1880118 15F08_rep_D_Vecuronium_bromidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080957/ccms_peak/peaks/Control118_neg.mzXML at line 689
attributes construct error, line 37, column 72 (Control118_neg.mzXML, line 37)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152347899-1576869 Batch1_NCIH1437_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2B09P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_B_E_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123652620-1876215 08D07_rep_C_Fomepizoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123652620-1876215 08D07_rep_C_Fomepizoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151605147-1576494 Batch7_NCIH226_2a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150554695-1864869 02E10_rep_C_Pirenzepine dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150554695-1864869 02E10_rep_C_Pirenzepine dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hldE_P4D5_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (hldE_P4D5_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_F22_id_MSn_positive.mzML at line 21
index 634 is out of bounds for axis 0 with size 634
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911124617208-1876664 09F11_rep_A_Cefmetazole_sodium_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911124617208-1876664 09F11_rep_A_Cefmetazole_sodium_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201332998-1881876 16H08_rep_B_Triclabendazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201332998-1881876 16H08_rep_B_Triclabendazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122149393-1879805 15H11_rep_C_Hexachloropheneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122149393-1879805 15H11_rep_C_Hexachloropheneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_blank_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/06012021_CABIN_EXTRACT_baseline_sample01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_02.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_STD1_02.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202403851-1878359 10C08_rep_A_Aprepitantb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202403851-1878359 10C08_rep_A_Aprepitantb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_positive/20231124_pluskal_iocb_peptide_Peptide01_B8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/010_CRa_H9M5_M470_L03_K3_low_pos.mzXML at line 689
Premature end of data in tag peaks line 15220, line 15224, column 3577 (010_CRa_H9M5_M470_L03_K3_low_pos.mzXML, line 15224)
Error processing file: /data/datasets/server/MassIVE/MSV000080958/ccms_peak/peaks/20100921_08_CNR_51.mzXML at line 689
attributes construct error, line 38, column 74 (20100921_08_CNR_51.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_40_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/3_22_2022_1003_Michael_leming_liver_neg-0.0046.mzML at line 689
Premature end of data in tag binary line 16132, line 16132, column 241658 (3_22_2022_1003_Michael_leming_liver_neg-0.0046.mzML, line 16132)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145651797-1863964 02C10_rep_A_Dizocilpine maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145651797-1863964 02C10_rep_A_Dizocilpine maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121919008-1879691 15H03_rep_B_Moxifloxacinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121919008-1879691 15H03_rep_B_Moxifloxacinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080197/peak/peak/Jackelin_04-07-2016_sample37.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_16_E_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S10_0126_190128115814.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_H_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15102021_Batch11_QC_68.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121738896-1867089 04H05_rep_C_Enalapril_maleateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121738896-1867089 04H05_rep_C_Enalapril_maleateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201317112-1877867 09H02_rep_B_Sulfabenzamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201317112-1877867 09H02_rep_B_Sulfabenzamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/15072022_Batch15_QC_93.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094445/raw/2023-PA-S14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_L19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092959776-1879090 14H09_rep_C_Cefepime_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092959776-1879090 14H09_rep_C_Cefepime_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201633881-1882009 16F03_rep_C_Indinavir_sulfatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201633881-1882009 16F03_rep_C_Indinavir_sulfatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_F_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_36_H_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_A4_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113657438-1922575 2_C11_IZH2_1_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113657438-1922575 2_C11_IZH2_1_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5003_H22_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111649305-1871593 10A03_rep_B_Isopyrin_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111649305-1871593 10A03_rep_B_Isopyrin_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145804428-1864023 02E01_rep_A_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145804428-1864023 02E01_rep_A_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Pseudomonas_sp_WTHI08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/TableS4_Sciex-QTRAP-6500-RapidScreen_patient-data/RapidScreen_PatientFecal_qc_ehigh.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S117.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082781/ccms_peak/raw/MTBLS661/S117.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125555978-1863030 03E04_rep_D_Flufenamic_acida.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125555978-1863030 03E04_rep_D_Flufenamic_acida.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201552126-1877979 09C07_rep_C_Nisoldipineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201552126-1877979 09C07_rep_C_Nisoldipineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112640391-1922079 4_D7_GPR1_10000_nM_CA_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112640391-1922079 4_D7_GPR1_10000_nM_CA_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152534178-1576955 Batch2_RERFLCSQ1_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112252225-1921879 3_F11_GPR1_1000_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112252225-1921879 3_F11_GPR1_1000_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_39.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30163 - GI-17-567.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sucD_P3F2_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (sucD_P3F2_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_04P_G4_id_negative.mzML at line 21
index 254 is out of bounds for axis 0 with size 254
Error processing file: /data/datasets/server/MassIVE/MSV000080030/ccms_peak/Forensic_study_80_volunteers/Forensic_Objects_mzXML/Forensic_Objects_plate_A_mzXML/.DS_Store at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201707408-1882034 16C03_rep_C_Donepezil_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201707408-1882034 16C03_rep_C_Donepezil_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112059580-1873041 10F04_rep_C_Norgestrel-(-)-Db.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112059580-1873041 10F04_rep_C_Norgestrel-(-)-Db.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122643419-1880031 15C03_rep_D_Dopamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122643419-1880031 15C03_rep_D_Dopamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_28.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082758/ccms_peak/raw/MTBLS173/20120821_28.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150450772-1924424 1_B5_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150450772-1924424 1_B5_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2C10Y.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125223867-1862858 03G09_rep_C_Tropicamidea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125223867-1862858 03G09_rep_C_Tropicamidea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysD_P4B12_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024968 (cysD_P4B12_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092325704-1878782 14D03_rep_A_Lansoprazolea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092325704-1878782 14D03_rep_A_Lansoprazolea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122340381-1879890 15H02_rep_C_Imatiniba.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122340381-1879890 15H02_rep_C_Imatiniba.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S04_0123_190123231433.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_L19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/05032021_BLOOD TUBES_PLASMA_V5_LH.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_F_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group5/group5_P1_C3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152410689-1576887 Batch2_NCIH2172_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150911274-1924648 2_F8_RGT2_1000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150911274-1924648 2_F8_RGT2_1000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_G_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_STD4_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_06_H8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_71_C_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_09.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_STD4_09.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/Kocuria_palustris_MER_TA_14.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000094968/raw/MALDI_paper_BTM_NK_AH_2024/WTHD08.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/25112021_Haemolysis_test_spike6_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/SH8_20170207_062EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/7c/a96a9effc322d242096c537042debb/input_file/SH8_20170207_062EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200947962-1881708 16E10_rep_A_Zoledronic_acid_hydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200947962-1881708 16E10_rep_A_Zoledronic_acid_hydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114215162-1874880 11C11_rep_D_Ethaverine_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114215162-1874880 11C11_rep_D_Ethaverine_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124757450-1862645 03B08_rep_B_Sulfamethoxazoleb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124757450-1862645 03B08_rep_B_Sulfamethoxazoleb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/BAT_raw files/Lumos_ISAS_BAT_QC4.mzML at line 689
Premature end of data in tag spectrumList line 92, line 30258, column 1 (Lumos_ISAS_BAT_QC4.mzML, line 30258)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_sample05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_L22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate6/Plate6_V4_GF6_01_16969.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151615796-1576503 Batch7_SN12C_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151832962-1867862 05B04_rep_C_Zidovudine,_AZTa.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151832962-1867862 05B04_rep_C_Zidovudine,_AZTa.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_01.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD1_01.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD5_08.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000097228/raw/lowinput_metabolomics2024/00081035.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210113140733 - 1-30166 - GI-18-114.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_B18_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101328414-1869410 07C06_rep_B_Metaproterenol_sulfate,_orciprenaline_sulfateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101328414-1869410 07C06_rep_B_Metaproterenol_sulfate,_orciprenaline_sulfateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/136-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224302829-1870524 01B02_rep_D_Meticraneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224302829-1870524 01B02_rep_D_Meticraneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GB12_01_11644.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/yeaE_P4C9_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (yeaE_P4C9_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201114243270-1922881 4_G10_STE2_10000_nM_estra_3hb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201114243270-1922881 4_G10_STE2_10000_nM_estra_3hb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate2/Plate2_V3_GF8_01_11536.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_12P_G8_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/sufS_P3D3_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024906 (sufS_P3D3_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/074_72.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_15_H_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125624476-1863053 03E09_rep_D_Trimethoprim_b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125624476-1863053 03E09_rep_D_Trimethoprim_b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909224144866-1870463 01F01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909224144866-1870463 01F01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122428770-1867416 04F02_rep_D_Dantrolene_sodium_salt_a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122428770-1867416 04F02_rep_D_Dantrolene_sodium_salt_a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_28_E_11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908151853059-1867878 05G02_rep_C_Lidoflazinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908151853059-1867878 05G02_rep_C_Lidoflazinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122603787-1867493 05F08_rep_A_Nafronyl_oxalateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122603787-1867493 05F08_rep_A_Nafronyl_oxalateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231124_negative/20231124_pluskal_iocb_peptide_Peptide01_B15_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210111152410 - 1-30097 - GI-16-444.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_STD2_07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/227.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/accD_#3_P5E2_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024976 (accD_#3_P5E2_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152808891-1577084 Batch3_RERFLCA1_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000096669/raw/1_14_40x_2022_1006_Michael_pos-0.0034.mzML at line 689
Premature end of data in tag binary line 1179, line 1179, column 1624291 (1_14_40x_2022_1006_Michael_pos-0.0034.mzML, line 1179)
Error processing file: /data/datasets/server/MassIVE/MSV000078850/ccms_peak/S.cattleya/S.cat_LB_M.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170209_011ENMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/54/44f76138e0ae28a5f36ae57e6c5ee2/input_file/QC_20170209_011ENMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000089241/ccms_peak/20220312_LKM_adipocytes_37C_1.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-internal.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082771/ccms_peak/raw/MTBLS32/100609fluexpSET1-internal.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidyzer Batch - 20210114130130 - 1-30259 - GI-19-234.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ6_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5001_C13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153144889-1577259 Batch4_NCIH2126_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087807/raw/RIGHT_SSL_EI_sleep_5_3_min_60_15dg_min_290_as_Center_1mkl_spli50_40min/04_05_2012_1334.mzML at line 689
Start tag expected, '<' not found, line 1, column 1 (04_05_2012_1334.mzML, line 1)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_D_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912121724020-1879604 15E07_rep_B_Sparfloxacina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912121724020-1879604 15E07_rep_B_Sparfloxacina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_G_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/2022-08-23_Batch16_QC_44.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_21_F_2.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112206315-1921839 3_B4_WT_0.1_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112206315-1921839 3_B4_WT_0.1_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/allB_#1_P4A4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024978 (allB_#1_P4A4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092337156-1878791 14G05_rep_A_Clonixin_Lysinateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092337156-1878791 14G05_rep_A_Clonixin_Lysinateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222178/20170920190318479-1889785 Nb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_45_A_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_C7_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_06P_C6_id_positive.mzML at line 21
index 416 is out of bounds for axis 0 with size 416
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5007_H20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907124625033-1862571 03F04_rep_B_Fenspiride_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907124625033-1862571 03F04_rep_B_Fenspiride_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908153539774-1868660 06H06_rep_C_Brompheniramine_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908153539774-1868660 06H06_rep_C_Brompheniramine_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03-2_24_H_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080930/ccms_peak/peaks/Mouse_24_Liver_EtOH_RESV_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_24_Liver_EtOH_RESV_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_positive/20230404_pluskal_nih_05P_A11_id_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_A_8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/05_06_A_8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_H6_id_MSn_positive.mzML at line 21
index 724 is out of bounds for axis 0 with size 724
Error processing file: /data/datasets/server/MassIVE/MSV000082756/ccms_peak/raw/MTBLS140/023_CRa_H9M5_M470_Pool_04_low_pos.mzXML at line 689
Premature end of data in tag peaks line 15638, line 15642, column 19959 (023_CRa_H9M5_M470_Pool_04_low_pos.mzXML, line 15642)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_C_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample115.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_B_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD1_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092113815-1878678 14H05_rep_A_Saquinavir_mesylatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092113815-1878678 14H05_rep_A_Saquinavir_mesylatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114532155-1875038 12A04_rep_A_Digoxigenina.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114532155-1875038 12A04_rep_A_Digoxigenina.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5004_B19_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150736859-1924567 2_E2_WT_100_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150736859-1924567 2_E2_WT_100_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911130201200-1877349 13F03_rep_B_Trapidila.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911130201200-1877349 13F03_rep_B_Trapidila.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/03_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000084493/raw/raw/GNPS00004_D3_n.raw at line 1197
Unknown filetype
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_A13_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D3_B10_id.mzML at line 21
index 530 is out of bounds for axis 0 with size 530
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_G_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000093144/raw/2023Jan_BSH_IGARM_BBAAs/389.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_E_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_12_D_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112153321-1873564 10H03_rep_D_Propidium_iodideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112153321-1873564 10H03_rep_D_Propidium_iodideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_07.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_STD4_07.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/06_29_H_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094968/ccms_peak/MALDI_paper_BTM_NK_AH_2024/MS2G01P.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000080931/ccms_peak/peaks/HaCaT_1_RESV_0uM_POS.mzXML at line 689
attributes construct error, line 38, column 81 (HaCaT_1_RESV_0uM_POS.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121638368-1867041 04E02_rep_B_Fludrocortisone_acetateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121638368-1867041 04E02_rep_B_Fludrocortisone_acetateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101721808-1869596 07E06_rep_C_Rifampicinb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101721808-1869596 07E06_rep_C_Rifampicinb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_34_F_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/potG_P4D10_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024967 (potG_P4D10_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/19072021_Batch07_QC_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_C_E_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082735/ccms_peak/ST000664/EX00347-lipidomics/Raw data/POS/BATCH3/20150406_Pooled.mzXML at line 689
Extra content at the end of the document, line 66937, column 1 (20150406_Pooled.mzXML, line 66937)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5003_G4_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_A_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_26_A_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121737654-1867088 04H05_rep_C_Enalapril_maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121737654-1867088 04H05_rep_C_Enalapril_maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_54.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912200539988-1881525 16E07_rep_A_Enalaprilat_dihydratea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912200539988-1881525 16E07_rep_A_Enalaprilat_dihydratea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_01_A_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220601_pluskal_mce_1D1_A2_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113233261-1922346 1_G7_IZH2_10000_nM_CA_1a.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113233261-1922346 1_G7_IZH2_10000_nM_CA_1a.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907150445191-1864815 02F04_rep_C_Hydroxyzine dihydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907150445191-1864815 02F04_rep_C_Hydroxyzine dihydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_33_C_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000089107/updates/2022-06-08_LeratoP_c8ff308c/raw/MSV000089107_mzML/pMIBSDR33h2a.mzML at line 689
error parsing attribute name, line 158656, column 16 (pMIBSDR33h2a.mzML, line 158656)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/hcaC_P6A7_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (hcaC_P6A7_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204151357784-1924895 4_A10_SNF3_0_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204151357784-1924895 4_A10_SNF3_0_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/2022-08-23_Batch16_QC_41.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/Ref_1_P_rep_3_B-B7_1_5521.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/399.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_09_C_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/15072022_Batch15_QC_145.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_STD5_01.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P4G06.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082763/ccms_peak/MTBLS272/raw/MTBLS272/IntraControlC3b.mzXML at line 689
Premature end of data in tag msRun line 5, line 703, column 1 (IntraControlC3b.mzXML, line 703)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_C_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098923/peak/LIPIDOMICS_NEGATIVE_16_MAY_23/CPV_P_rep_1_B-C5_1_5529.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Rothia_mucilaginosa_RmFLR01_mix_PAnmFLR01_02.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909222912128-1869889 01E08_rep_A_Ticlopidine hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909222912128-1869889 01E08_rep_A_Ticlopidine hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_negative/20231123_pluskal_nencka_mce_5001_E14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_F8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911122804763-1875794 08A07_rep_A_Eserine_hemisulfate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911122804763-1875794 08A07_rep_A_Eserine_hemisulfate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/Validation_Experiment_MetFish/001_10nMAAcali_30ugmLIS_SRM_Col2_JX_04082015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082785/raw/raw/MTBLS283/1358BZU_0012_A1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/11_75_A_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_Group4/group4_P1_G10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_C23_id.mzML at line 21
index 548 is out of bounds for axis 0 with size 548
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_04_C4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/04102021_Batch10_QC_64.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5009_I4_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/cysU_P6F3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024972 (cysU_P6F3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152717373-1577041 Batch2_RERFLCSQ1_2b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000094491/peak/MpTen3_N.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/BUD2_40EV_RA5_01_22587.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_F_2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603151651117-1576533 Batch7_CAL51_1b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-cc5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171204150636929-1924515 2_C2_WT_1_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171204150636929-1924515 2_C2_WT_1_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_02_D_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P6A07.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Haemolysis_test_spike2_1.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907125445861-1862973 03E01_rep_D_Chloramphenicol_ctrlb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907125445861-1862973 03E01_rep_D_Chloramphenicol_ctrlb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201111909898-1921688 2_F7_GAP1_10000_nM_CA_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201111909898-1921688 2_F7_GAP1_10000_nM_CA_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000083829/ccms_peak/QC_20170207_048EXMP.mzML at line 687
Error reading file '/data/gscratch/workdirs/per_scan_summarizer/6d/92022088b89c01211e1dc94478a208/input_file/QC_20170207_048EXMP.mzML': Invalid bytes in character encoding
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/10_42_D_4.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/07_19_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ7_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B20_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_07_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201435592-1881923 16D02_rep_C_Aminacrinea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201435592-1881923 16D02_rep_C_Aminacrinea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_A14_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06012021_CABIN_EXTRACT_baseline_QC_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078960/ccms_peak/Soce38-Hmix_SPL-6+5+4_RA1_01_20467.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912092943724-1879077 14G07_rep_C_Meropenemb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912092943724-1879077 14G07_rep_C_Meropenemb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_manual_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078839/ccms_peak/R5/S.TU6071_R5_B.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/25112021_Batch14_QC_51.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_6.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/08_08_B_6.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_10.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_01_A_10.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample231.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_17_B_7.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_GF3_01_11735.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_33_A_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000092046/peak/DM_HCC/E222179/20170921172719417-1889929 NNb.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/S02_0126_190128180343.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_08_D_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/07_QC_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/28102021_Batch12_QC_108.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000085743/ccms_peak/peak/QTrap007689_032218-5CRP1_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_164.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082784/ccms_peak/raw/MTBLS157/mtab_rpom3_filters_tsq_164.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5010_B10_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909101736303-1869608 07F02_rep_C_Pirenperoneb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909101736303-1869608 07F02_rep_C_Pirenperoneb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_04_A5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201113845039-1922669 3_D3_WT_10_nM_estra_1b.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201113845039-1922669 3_D3_WT_10_nM_estra_1b.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0010_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0010_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep4-5-LLOQ6_1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086509/ccms_peak/DG009376_IBD200_E2_A7.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/1060.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000081288/raw/Ecoli_Study2/Fragmentation/NegativeMode/EcoliB2_CFT073_SN_cT10_NEG.mzXML at line 689
Opening and ending tag mismatch: peaks line 133457 and scan, line 133469, column 12 (EcoliB2_CFT073_SN_cT10_NEG.mzXML, line 133469)
Error processing file: /data/datasets/server/MassIVE/MSV000080928/ccms_peak/peaks/Mouse_06_blood_RESV_oral_NEG.mzXML at line 689
attributes construct error, line 38, column 89 (Mouse_06_blood_RESV_oral_NEG.mzXML, line 38)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_4.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_B_4.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111419375-1871478 10F04_rep_B_Norgestrel-(-)-Db.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111419375-1871478 10F04_rep_B_Norgestrel-(-)-Db.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_3.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/09_17_A_3.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep2-3-meoh (9).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091910376-1878583 13H10_rep_D_Levocabastine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091910376-1878583 13H10_rep_D_Levocabastine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-057.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082762/ccms_peak/MTBLS225/raw/MTBLS225/TQS-RLN-20140623-057.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_06.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_STD4_06.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5007_L22_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/132-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/narW_P3D1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024984 (narW_P3D1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_L11_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240408_MSn_negative/20240408_pluskal_fda_drugs_5006_A1_id_MSn_negative_20240410175516.mzML at line 21
index 260 is out of bounds for axis 0 with size 260
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_H_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H8.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_01_H8.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_28_E_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20231123_positive/20231123_pluskal_nencka_mce_5000_P8_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/192-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L0.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_7.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/04_20_F_7.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample134.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/10_32_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111902497-1872564 10F09_rep_C_Proadifen_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111902497-1872564 10F09_rep_C_Proadifen_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/trpD_P4H5_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024905 (trpD_P4H5_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/01_STD4_05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_J7_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5009_J9_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_14_F_11.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230404_negative/20230404_pluskal_nih_14P_E2_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/183-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911115005291-1875253 12B07_rep_B_N-Acetyl-L-leucineb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911115005291-1875253 12B07_rep_B_N-Acetyl-L-leucineb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#4_Woman/Human_Swabs/Plate5/Plate5_V4_GH6_01_16882.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908152220377-1868043 05E02_rep_D_Bambuterol_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908152220377-1868043 05E02_rep_D_Bambuterol_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911123149736-1875972 08B04_rep_B_Troglitazonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911123149736-1875972 08B04_rep_B_Troglitazonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603153733149-1577544 Batch6_NCIH526_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_LLOQ/RapidScreen_LLOQ_Rep1_2-LLOQ1_8.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/lpd_P3B1_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (lpd_P3B1_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_12.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/02_44_F_12.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_STD5_10.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20230130_negative/20230131_pluskal_mce_1D2_C13_id_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_F_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_C_12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/06_70_G_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_1mM_D_AC_AS_Neg.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082769/ccms_peak/raw/MTBLS311/MS2/Athal_Susp_1mM_D_AC_AS_Neg.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152742742-1577062 Batch2_OVCAR4_1a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/ccms_peak/New_mzMLFinal/20160603152556060-1576973 Batch1_7860_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000078597/ccms_peak/flowprobe_2013_Anal_Chem/Streptomyces_roseosporus_NRRL15998_01.mzXML at line 472
Pyteomics error, message: 'Error when converting types: ("invalid literal for int() with base 10: \'IC1\'",)\nTry reading the file with read_schema=True'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_positive/20240405_pluskal_enammol_5002_O21_id_MSn_positive.mzML at line 21
index 553 is out of bounds for axis 0 with size 553
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151351692-1576384 Batch6_CALU1_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/04102021_Batch10_QC_20.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088459/raw/berliansaf28/ka viqqi/converted coba2/200609_sample_07.mzXML at line 883
'polarity'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_15_A_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_9.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/01_43_B_9.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080170/ccms_peak/TSQ_Data/RawFiles/P7C05.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/coaA_P3D7_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024969 (coaA_P3D7_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000096852/ccms_peak/Raw files/Liver_raw files/Lumos_ISAS_liver_unLabeled_3.mzML at line 689
Premature end of data in tag spectrumList line 92, line 47720, column 1 (Lumos_ISAS_liver_unLabeled_3.mzML, line 47720)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/07JAN2021_PLASMA_Extraction_Compare_IPA_6.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate1/Plate1_V3_H11_01_12191.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912122323514-1879877 15C03_rep_C_Dopamine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912122323514-1879877 15C03_rep_C_Dopamine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000085743/peak/peak/QTrap007702_032218-5CRP6_SN.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087941/raw/two_sponge_mzml/817.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603151933992-1576668 Batch1A_MDAMB231_3a.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/plaP_P3A4_neg.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024907 (plaP_P3A4_neg.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D2_H21_id.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/02_23_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912091824566-1878546 13E01_rep_D_Chloramphenicol_ctrla.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912091824566-1878546 13E01_rep_D_Chloramphenicol_ctrla.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M7_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202452319-1878397 10D05_rep_A_Fenoprofen_calcium_salt_dihydrateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202452319-1878397 10D05_rep_A_Fenoprofen_calcium_salt_dihydrateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170907145742295-1864005 02C09_rep_A_Nomifensine maleatea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170907145742295-1864005 02C09_rep_A_Nomifensine maleatea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911114608781-1875065 12D06_rep_A_Lorglumide_sodium_saltb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911114608781-1875065 12D06_rep_A_Lorglumide_sodium_saltb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911201402531-1877900 09A05_rep_C_N-Acetyl-DL-homocysteine_Thiolactonea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911201402531-1877900 09A05_rep_C_N-Acetyl-DL-homocysteine_Thiolactonea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000080953/ccms_peak/peaks/Person04_RBC_youth_POS.mzXML at line 689
attributes construct error, line 41, column 99 (Person04_RBC_youth_POS.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_05_G_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122011594-1867209 04A02_rep_C_Mexiletine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122011594-1867209 04A02_rep_C_Mexiletine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_positive/20240502_pluskal_enamine_5008_M21_id_MSn_positive.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000089746/ccms_peak/220627 AST prognosis/Raw spectrum/quantification/190123 ST prognosis quant/P_402.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/11_04_D_1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911111338917-1871447 10B04_rep_B_Metoprolol-(+,-)_(+)-tartrate_salta.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911111338917-1871447 10B04_rep_B_Metoprolol-(+,-)_(+)-tartrate_salta.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/12_05_F12.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911112912917-1874299 11A03_rep_A_Methazolamideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911112912917-1874299 11A03_rep_A_Methazolamideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/QC05_ne.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122449670-1867433 04H10_rep_D_Clofilium_tosylateb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122449670-1867433 04H10_rep_D_Clofilium_tosylateb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B11.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082783/ccms_peak/raw/MTBLS434/12_02_B11.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000087941/ccms_peak/two_sponge_mzml/190-2.mzML at line 810
cannot access local variable 'software_list' where it is not associated with a value
Error processing file: /data/datasets/server/MassIVE/MSV000093118/search/Lipidomics - 230418 - 2-JHU28.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908121427026-1866939 04G03_rep_B_Lincomycin_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908121427026-1866939 04G03_rep_B_Lincomycin_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170909100327812-1868930 06E08_rep_D_Hydrocortisone_baseb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170909100327812-1868930 06E08_rep_D_Hydrocortisone_baseb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0003_A1.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082785/ccms_peak/raw/MTBLS283/1358BZU_0003_A1.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000080956/ccms_peak/peaks/COR1_MS_RA7_01_22681.mzXML at line 889
Unknown polarity
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170912201649941-1882021 16B08_rep_C_Tolcaponea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170912201649941-1882021 16B08_rep_C_Tolcaponea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20171201112551372-1922036 4_F9_GPR1_1000_nM_estra_3ha.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20171201112551372-1922036 4_F9_GPR1_1000_nM_estra_3ha.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/14022022_QTRAP02_QC_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086685/ccms_peak/MITOMICS/Proteomics/20190114_ES_H3K_batch13_repC_pWT.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000098238/ccms_peak/Figure5_Sciex-QTRAP-6500-RapidScreen_AMR/RapidScreen_AMR_Lin-L1 (2).mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170908122248752-1867335 04G11_rep_D_Mebeverine_hydrochlorideb.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170908122248752-1867335 04G11_rep_D_Mebeverine_hydrochlorideb.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate3/Plate3_V3_rerun_H7_01_11786.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000086351/peak/Sample174.mzml at line 621
'precursorList'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/05032021_BLOOD TUBES_PLASMA_V4_LH.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/peak/mzml_20220601_positive/20220613_100AGC_60000Res_pluskal_mce_1D1_P1_id.mzML at line 21
index 581 is out of bounds for axis 0 with size 581
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5010_O5_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000079699/ccms_peak/QQQ_group1/group1_P2_G5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000095534/raw/FI-MS_BigScreen/kup_P3E3_pos.mzXML at line 689
Resource limit exceeded: Text node too long, try XML_PARSE_HUGE, line 41, column 10024971 (kup_P3E3_pos.mzXML, line 41)
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240405_MSn_negative/20240405_pluskal_enammol_5002_A19_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size
Error processing file: /data/datasets/server/MassIVE/MSV000078622/ccms_peak/Volunteer#3_Man/Human swabs/Plate4/Plate4_V3_GB6_01_11916.mzXML at line 1497
no element found (line 0)
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/05_06_F_9.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/08_48_B_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000088606/peak/210116_AR_13_23A_D05_1_POS.mzML at line 210
unknown error
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/04_blank_14.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082783/raw/raw/MTBLS434/09_18_D_3.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3C2.mzXML at line 1031
No scans found in file /data/datasets/server/MassIVE/MSV000082786/ccms_peak/raw/MTBLS312/MS2/3C2.mzXML
Error processing file: /data/datasets/server/MassIVE/MSV000086451/ccms_peak/20201110_rawdata/20170911202529072-1878426 10F09_rep_A_Proadifen_hydrochloridea.mzML at line 689
xmlns: '"http://psi.hupo.org/ms/mzml"' is not a valid URI, line 5, column 55 (20170911202529072-1878426 10F09_rep_A_Proadifen_hydrochloridea.mzML, line 5)
Error processing file: /data/datasets/server/MassIVE/MSV000090952/peak/06032021_Batch04_QC_5.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000090952/ccms_peak/10112021_Batch13_QC_18.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000087155/peak/New_mzMLFinal/20160603152015722-1576701 Batch1_HCC1395_3b.mzML at line 591
'scan'
Error processing file: /data/datasets/server/MassIVE/MSV000085713/ccms_peak/Raw_Spectrum_Files/UCC_Oscar_MetFish/005_Urea_Day7_1_Col2_JX_07062015.mzML at line 113
'NoneType' object has no attribute 'get'
Error processing file: /data/datasets/server/MassIVE/MSV000094528/updates/2024-10-07_corinnabrungs_594d7cf4/peak/mzml_20240502_MSn_negative/20240502_pluskal_enamine_5008_A20_id_MSn_negative.mzML at line 261
buffer size must be a multiple of element size